LOCUS       DASRBJ010000001         7205 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_197,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000001 DASRBJ010000000
VERSION     DASRBJ010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7205
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..695
                     /locus_tag="VE968_00005"
     CDS             <1..695
                     /locus_tag="VE968_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HZU50233.1"
                     /translation="GHHKPEYRGWIEAAGYTKAKDLLTYEVDIAHWDDPKITRLIKMG
                     ESNPHVRIRMVDKSKFNEEARIILNLLNDAWSNNWGYVPLTEAEIAYAGKKLKPIIYN
                     ELVRVAELDGEPVAFMITIPDINELTRDLNGELFPFNFIKLLWRLRNPRTSRARVPLM
                     GVARKLHQSRMASMLAFMMIEYSRREAVKKFGIGIGEFGWILEDNKGMLSIAELPGAR
                     VNHRYRIYEKAL"
     gene            complement(761..1534)
                     /gene="xth"
                     /locus_tag="VE968_00010"
     CDS             complement(761..1534)
                     /gene="xth"
                     /locus_tag="VE968_00010"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008311 - double-stranded DNA 3'-5' DNA
                     exonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HZU50234.1"
                     /translation="MKLATYNLNGIRARLPRLVEWLDREQPDIVCLQELKCADEALPI
                     GDIEAAGYGAVWHGQKGFNGVAILARGDTPELRRVGLPGDPDDTHSRYIEAEVRSVVV
                     ASLYLPNGNPAGTEKFDYKIRWMGRLCTHAADLLKEERPAVLAGDWNVVPEDRDVFSV
                     RATEHDAVMRPEARQQWRRLLYQGWTDALRSLHPSEEKLYTFWDYTAGCWQRDLGFRL
                     DHLLCSPELTDRLDGAGVDKWARGQEKASDHAPTWITFS"
     gene            complement(1559..2296)
                     /locus_tag="VE968_00015"
     CDS             complement(1559..2296)
                     /locus_tag="VE968_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008995850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HZU50235.1"
                     /translation="MNAELSVEGSESVALVVREELARRRLSRQWLADEAKVSLSTLEK
                     ALAGRRSFTLATVVRLEEALGIRLRARGSLNAEARLFAPESMGAYSRPAVQWLEGTYL
                     TLRPSFSEKRAIFAYLTSIGWDDTEGHLVFSEAERTDAEYAQKGFVSFPNISGAIYLV
                     TVWQGQYRIALLNRPSGRWLSGILLTLAAGEGAQLTPASLPIVLLPTNAAENKPVGLI
                     RPGDTSYDEYRGCVDRVTQQGYARFPS"
     gene            complement(2730..3062)
                     /gene="erpA"
                     /locus_tag="VE968_00020"
     CDS             complement(2730..3062)
                     /gene="erpA"
                     /locus_tag="VE968_00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HZU50236.1"
                     /translation="MSEPAINLTERAATRVAWIAERQQKPAVLRLSVDGGGCAGFTYR
                     FELADGPTGDDEVAETSGVKLLVDPISLELLRGSSVDFVEDLGGAQFRVTNPNAQSGC
                     GCGSSFSV"
     gene            complement(3109..4167)
                     /locus_tag="VE968_00025"
     CDS             complement(3109..4167)
                     /locus_tag="VE968_00025"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HZU50237.1"
                     /translation="MTQVLAATTALFRDRDLFVHDGSKLRRFRISAPLQAVFFVGLLA
                     ILGWASYATARLIARPRPAAATVSLPAATEARARQIEQRQAIIEAALAGQKIDPQFLA
                     AAGRDGRLAQDGPLARVEQAQLAQAALVAKALDVRYEVTTAELKRLGISPARVGGHTG
                     VGGPFESAGNSTFKALFDSWKKLDQLQDGVIAIPSDKPVKTNVEFTSGFGVRSDPFEH
                     GAAMHPGIDLAGAYGTPIYATADGTVLRAGWNSGGYGNMVELDHGRGIVTRYGHMSAV
                     LVHAGEHVTRGEQIGRMGSTGRSTGNHLHYEVRIDGRPVNPIPFMKSTDYVLAMQRRA
                     GAASMDAVAMGGPAGGQH"
     gene            4557..5726
                     /locus_tag="VE968_00030"
     CDS             4557..5726
                     /locus_tag="VE968_00030"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020820251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HZU50238.1"
                     /translation="MTETAVAGAELRRAKPINRPARPYFSSGPCAKPPGWSPDKLETV
                     ALGRSHRGSVGKSRLQDAIDRTSVLLQLPSDYRLGIVPASDTGAMEMALWSLLGPRPV
                     TMLAWESFGQGWVTDVAKQLKIDAEIRTADYGEIADLERIDADSDVVFTWNGTTSGVR
                     VPNADWIAETRTGLTICDATSAAFAQDIDWAKLDVATFSWQKALGGEAAHGMLVLSPR
                     AIERLEKEPAARALPKIFRLTKGGQLIDGIFRGETINTPSMLCVEDWLFALDWAERIG
                     GLNALIARADANAAMLDGWVTQADWIEHLAKDPRTRSNTSVCLQFTDRSDEKANRARQ
                     KAIGTLLEREGVAFDVSAYRDAPPGLRIWCGATVEAADIKALGPWLEWAWDETRT"
     gene            5823..>7205
                     /gene="serA"
                     /locus_tag="VE968_00035"
     CDS             5823..>7205
                     /gene="serA"
                     /locus_tag="VE968_00035"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004617 - phosphoglycerate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HZU50239.1"
                     /translation="MTEQVHVLIADKMDPRAAAIFRERGIHVDERPGLTPDELKSIIG
                     DYDGVAVRSSTKINAAAMDAGLPRLKVIGRAGIGVDTIDVPAASARGIVVMNTPFGNS
                     ITTAEHAIAMLFALAREIPQADQSTQAGRWEKNRFMGVELAGKTLGLVGCGNIGSIVA
                     DRAHGIKMKVLAYDPFLSPARAVELGVDKVELDELLSRADFITLHTPLTDQTRGILGR
                     AAIAKTKKGVRIVNCARGGLIDEEALKDALDSGHVAGAALDVFAEEPAKANPLFGTPG
                     LICTPHLGASTTEAQVNVAIQVAEQMSDFLLLGGITNAVNVPSLSAEEAPRLRPYMSL
                     AEQLGRLVGQTSGSEIDSIDIEVEGAAAELNIKPISGAVLAGVMRTWSDTVNMVNAPY
                     LAKERGIAVREIRNDGEGDYHTLVAVTVRSEKGARRVEGTLFGNRAPRLVKIFDIPVE
                     AELTGQMIYIV"
BASE COUNT         1512 a         2161 c         2146 g         1386 t
ORIGIN      
        1 tggggcacca caagcccgag tatcgcggct ggattgaggc cgccggctat acgaaggcca
       61 aggatctcct cacctatgag gtcgacatcg cccactggga cgatccgaag atcactcgcc
      121 tgatcaaaat gggcgaaagt aatccccacg tccgaatccg gatggtggac aagtcgaagt
      181 tcaatgagga agcgcgcatc atcctcaatc tgctgaacga cgcctggtcg aacaattggg
      241 ggtatgtgcc gcttaccgag gcggaaattg cctatgccgg gaaaaagctc aagccgatta
      301 tctacaacga gcttgtccgc gttgcagagc tcgacggcga acccgtcgcc ttcatgatca
      361 ctataccgga catcaacgag ctcacgagag acctcaacgg tgagctgttt cccttcaatt
      421 tcatcaagct gctgtggcgc ttgcgcaatc cgcgcaccag ccgcgcacgc gtcccactga
      481 tgggtgttgc acggaagctt caccaatcgc gaatggcaag catgctcgcg ttcatgatga
      541 tcgagtacag ccgccgagag gccgtgaaga agttcgggat cgggatcggc gagttcggct
      601 ggatacttga agataacaag ggcatgttat caatcgccga acttcccggc gcacgcgtca
      661 atcatcgtta ccgcatttac gagaaggcgc tttgatcatt gcctcttgca aacggttccg
      721 tgctgcgggg ctgaccaccc caccgaggca aagtcgcgga tcatgaaaaa gtgatccacg
      781 ttggtgcgtg atccgatgct ttctcttggc cgcgagccca cttatcaaca cctgctccgt
      841 cgagacgatc ggtgagctcg ggcgagcaaa gaaggtggtc gagccgaaac cctagatcgc
      901 gctgccaaca gccagcggta taatcccaga aggtatagag cttttcctct gaagggtgga
      961 gcgaacgaag cgcatcggtc caaccctggt aaagcaaccg acgccattgc tgccgtgctt
     1021 ccggccgcat gaccgcatca tgctccgttg ctcgaacaga gaacacgtcg cggtcttctg
     1081 gaacgacgtt ccagtcgccg gcgagtaccg ccggccgctc ctctttcagc aagtccgcgg
     1141 cgtgagtgca gagccgcccc atccagcgaa tcttataatc gaatttttcc gttccggcag
     1201 gatttccatt ggggagataa agggaagcaa caacgacgct tcgaacctct gcttcgatgt
     1261 agcgactgtg cgtgtcgtcg ggatcgccag gaaggccaac gcgacgcagt tctggtgtgt
     1321 cgccccgcgc aagtattgct acaccgttga accctttctg gccgtgccaa acggctccat
     1381 atccagcagc ctcgatgtca ccaatcggaa gcgcttcgtc ggcgcatttg agctcctgca
     1441 ggcagacaat gtccggttgc tcgcgatcaa gccattcaac gagacgggga aggcgcgctc
     1501 gaattccatt gagattgtaa gttgcaagtt tcacgaggca ccgcttagcg gccgtcgttc
     1561 aactcggaaa gcgcgcgtaa ccttgctggg ttacgcggtc gacacagcct cgatactcgt
     1621 catagctagt atcaccgggc ctgatcagtc cgacgggctt gttctcagcc gcgttggttg
     1681 gcagcagcac gatcggcaat gatgcaggcg ttaattgcgc gccttcgcca gcagcaaggg
     1741 tgagcaagat tccgctcaac catcggcccg acggtcggtt gaggagcgca attcggtact
     1801 gtccctgcca aaccgtgacg aggtaaatcg cgcccgagat gttggggaat gaaacgaagc
     1861 ctttctgcgc atactctgcg tcggttcgct cagcctcgga aaagacgaga tgcccttccg
     1921 tgtcgtccca gccgatggag gtcagatagg cgaagatcgc gcgcttttcg ctgaaggacg
     1981 gacgaagggt cagatatgtc ccttcaagcc attgaactgc cggacgcgaa taagctccca
     2041 ttgactccgg cgcgaacagc cgcgcttcgg cgttgaggct cccccgcgcg cgcagcctta
     2101 tgccaagcgc ttcttcaagc cggacgactg ttgcaagagt gaaggagcgt cgtcccgcaa
     2161 gagccttttc gagcgtcgaa aggctgactt ttgcctcgtc agcaagccac tgtcgcgaaa
     2221 gccttcgccg ggcaagctcc tcgcggacca caagcgctac cgattcgctg ccttcgacac
     2281 tgagttccgc gttcatggac tcgcccccac ttggcacgca catctccgca catttccgca
     2341 catttcgtca actgcggaca tcgcccgtgc cgcccgaagc gtcgttttcc agcactttct
     2401 cgtggtcgtt cagaccgtgc gggccgataa gaaggcaagc ttcgaactga gaagcaaggg
     2461 acgatgaacg tgctcagcac tcgtgtaaaa acaggacttg gcggcatgat cagtgttagc
     2521 gtgctgcttt tagctgttca gttcatcagt ggtgtgcagg ccttcccgct gtgagtcact
     2581 ccggtgggaa atcgcacctg ctccgcgcgg gccaagactg acgaaccgtc ggtcgggggc
     2641 aaggcgctac cgctgaaggc cacggctttc ggcggttcgc cgcccgtcgc ggcgcggatg
     2701 aaagccagtt gaacgtggcg ggttccggat cagacagaaa aactggagcc gcaaccgcaa
     2761 ccggattggg cattgggatt cgttactcga aactgggctc cgccaagatc ttcaacgaag
     2821 tcgaccgagg atcctcttaa gagctcgagg ctaatcggat cgacgaggag cttcacgccg
     2881 ctggtctcgg caacttcgtc atcgcccgtc ggcccatcag caagttcgaa ccggtaggtg
     2941 aacccggcgc atccgccacc gtcgacagat aggcgcagca cagccggctt ttgctgccgc
     3001 tcggcaatcc aggcgacgcg tgtcgcagcc ctctcggtta aattgatcgc cggttcgctc
     3061 acgacggaaa gatagggacg gagcaatgtc cctgcaatca gggccggctt agtgctgacc
     3121 gcctgctggt ccacccatcg cgactgcatc catcgatgca gcgcctgctc gacgctgcat
     3181 tgcaaggacg tagtcggtcg acttcatgaa cggtattggg ttcaccggcc gtccatcgat
     3241 ccgcacttca tagtggaggt gattgcccgt cgagcgcccg gtcgagccca tccgcccgat
     3301 ctgctcgccg cgcgtaacat gctcaccagc gtggaccagc actgccgaca tgtgaccata
     3361 tcgagtgaca atgccgcgac catgatcgag ctcgaccatg ttgccgtagc cgccgctgtt
     3421 ccaacccgcc cgaagcacgg ttccgtcggc cgtcgcgtag attggcgttc cgtaggcgcc
     3481 ggcaagatca atgccgggat gcatcgccgc tccgtgctcg aagggatctg aacggacccc
     3541 aaagccgctc gtaaactcga cgttcgtctt caccggcttg tccgacggaa tggcgatgac
     3601 gccatcctga agctgatcaa gctttttcca gctatcgaag agcgccttga acgtcgagtt
     3661 gcccgcgctt tcgaacggac cgccgacgcc ggtgtgacca ccgacccttg ccgggctgat
     3721 gcccaagcgc ttcagttcgg cagtcgtaac ctcgtaacgg acatcgagcg ccttggcgac
     3781 gagagcggcc tgtgcaagct gcgcctgctc gacgcgcgcc agcggcccat cctgggcgag
     3841 gcgtccgtca cgtcctgccg cggcaaggaa ttgaggatcg attttctgtc ccgcgagtgc
     3901 cgcctcgata atcgcttggc gctgttcgat ctgccgcgct cgagcttcgg ttgctgcggg
     3961 tagactgacc gtggcagcag cgggacgcgg acgggcgatc aatcgagcgg tcgcgtaact
     4021 cgcccaacca aggatcgcta gaagtccaac gaaaaacacc gcctgaagcg gtgctgaaat
     4081 gcggaagcgg cgaagctttg atccgtcgtg gacaaagaga tcgcgatctc gaaagagcgc
     4141 cgttgtcgcc gctaatactt gcgtcatctt aaacccgctc cacacgaagc acgcgcatca
     4201 agcacgtggc cttgtcccaa tcgtgaaagg agctccccag cccctcgcca tactcgcgga
     4261 ttgccccccc cgcgcatcgg ctgacggcac actgctttcg gatggttaac aatttcaacc
     4321 ttcgggacga acaaccggga cgagtcgtct gctccttacg gtgaaccgat gaatccgcgg
     4381 agataaggcg gctgactcga gcaatttcaa tctgttgtgc gtcgcaacat tcacggttga
     4441 acaaaggatt gcgtgcgaat ctctcgcgcc cacttgcggc ttccacaatc gctcttaaaa
     4501 gcggctccgg gccacgccgt cccaacgcgg cgcgagctct ctggaaggag agtcacatga
     4561 ctgaaactgc cgttgccggc gccgaattgc gccgcgctaa accgatcaac cgtcccgcac
     4621 gaccctattt ttcttccggc ccctgcgcga agccgccggg ctggagtcct gacaagctcg
     4681 aaacggtcgc ccttggccgc tcacaccgcg gaagcgtggg caaaagcaga ctgcaagacg
     4741 cgatcgacag gacaagcgtg cttttgcagc ttccgagcga ctaccggctc ggaatagttc
     4801 cggcttccga caccggcgca atggaaatgg ccttgtggtc gttgctcggg ccaaggccgg
     4861 tcaccatgct ggcatgggag agcttcggcc aaggttgggt gacggatgtc gccaaacagc
     4921 tgaagatcga cgcggaaatt cgtaccgccg actatggcga gatcgctgac ctcgagagga
     4981 tcgacgccga cagcgacgtc gtattcactt ggaatggcac gacgagtggc gtgcgcgtgc
     5041 cgaacgccga ctggattgcc gagacccgca cgggtcttac gatttgcgat gcgacatcgg
     5101 cggcatttgc tcaggatatc gactgggcca agctcgacgt tgctacgttc agctggcaga
     5161 aggcgcttgg tggcgaggct gcgcatggca tgctcgtcct gtcgccgcgc gcgatcgaga
     5221 ggctcgagaa agaaccggcg gcgcgagcgc tcccgaagat attccgcctg acgaagggtg
     5281 gacagcttat cgacgggatc ttccggggag agacaatcaa cacaccgtcc atgctttgtg
     5341 tcgaggactg gctttttgcg ctggactggg cggagcgcat cggcggcctt aatgcattga
     5401 ttgcgcgagc cgatgccaac gcggcgatgc ttgatggctg ggtgacgcag gccgactgga
     5461 tcgaacatct cgcaaaggat ccgaggacgc ggtcgaatac gtcggtttgc ctgcagttca
     5521 ccgatcgatc cgatgaaaaa gccaatcgtg cccgacaaaa ggcgattggc actctgcttg
     5581 agcgcgaagg tgtcgcgttc gacgtcagtg cctaccgaga tgctccgcct ggccttcgga
     5641 tctggtgcgg cgcaacggtg gaagcggccg atatcaaggc actcggcccc tggcttgaat
     5701 gggcttggga cgagacgaga acataggtct cgcgcgatgc aagcacagcc ctgccgcctt
     5761 ggatcaatga ttgccgaaga actgagcagc cgccagttct tcgagaaatt cgaaagagaa
     5821 acatgactga acaagtgcac gtcctcatcg cggacaagat ggacccgcgc gcagcagcga
     5881 tcttccgcga gcgcggaatc catgttgatg aaagaccggg acttactccc gacgagctaa
     5941 agagcatcat tggcgactat gatggcgtcg ccgttcgaag ctccaccaag attaatgccg
     6001 cggcaatgga cgctggcctc ccccgattaa aggttattgg ccgagctggt atcggggtcg
     6061 atacgattga cgtgccggcc gccagtgcac gcggtatcgt cgtcatgaac acgccttttg
     6121 gaaactcgat cactacggca gaacatgcga tcgcgatgct tttcgcgctc gcccgcgaga
     6181 tcccgcaggc ggatcagtca acccaggcgg gccgctggga gaagaaccgc ttcatgggag
     6241 tggaactggc gggaaagacc cttgggcttg tcggctgcgg caacatcggc tcgatcgttg
     6301 ccgatcgcgc ccatgggata aaaatgaagg tccttgccta tgacccgttc ctctcgccgg
     6361 ctcgtgccgt cgagctaggc gtcgacaagg tagaactgga cgaactactt tcgcgcgcag
     6421 atttcatcac gctgcacacg ccgctcaccg accaaacgcg cgggatcctc gggcgcgcgg
     6481 caatcgcgaa aacgaaaaag ggcgttcgca tcgtgaattg cgcccgcggc ggcctcattg
     6541 acgaagaggc gctgaaagat gcgcttgact cgggtcatgt tgcaggagcc gctctcgacg
     6601 tcttcgccga ggagccggcc aaggcgaatc ccctattcgg gacgccgggc ctcatttgca
     6661 cgccgcacct tggagcttca acgaccgagg cgcaggtgaa cgtcgccatc caagtcgccg
     6721 agcaaatgag cgacttcctg ctgctcggcg gcatcacgaa tgcggtaaat gtgccgtcct
     6781 tgtctgccga ggaagcacct cgcctcaggc cctatatgtc gctggccgag cagctcggac
     6841 gtcttgtcgg ccagacgagc ggctccgaga tcgattcgat cgacatagag gtcgagggag
     6901 cggcagctga gctaaacatc aagccgatct ccggagcggt gcttgccggc gtgatgcgga
     6961 catggtccga cacggtgaac atggtcaatg ctccctatct cgcaaaggag cgcggcatcg
     7021 ccgttcgaga aatccgcaat gatggagaag gcgattacca tacgctcgtt gccgtgacgg
     7081 ttcggagcga gaaaggagcg cggcgggttg aagggacgtt gttcggcaac cgagcgccgc
     7141 gcttggtcaa gattttcgat attcccgttg aggcggaact caccggccag atgatttaca
     7201 tcgtc
//
LOCUS       DASRBJ010000002         4017 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_608329,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000002 DASRBJ010000000
VERSION     DASRBJ010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4017
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_608329"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            134..472
                     /locus_tag="VE968_00040"
     CDS             134..472
                     /locus_tag="VE968_00040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50240.1"
                     /translation="MAAAIIVAALPLAVAPAQAAAKEPLIVTRMADPDPNFVPSSDDS
                     LRRKTHKTEAADENSRIDEAMMNFGRAIGQAALIEQRQIETKCRQGPGESSTPEQRFD
                     WAATCRYTRH"
     gene            563..2296
                     /gene="argS"
                     /locus_tag="VE968_00045"
     CDS             563..2296
                     /gene="argS"
                     /locus_tag="VE968_00045"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HZU50241.1"
                     /translation="MSLYAQYAALLDGVLDKLIADGALPSDLDRKNVTVEPPRDTAHG
                     DLATNAAMVLAKAANTNPRALAEIIKRELQAIPMVTSVEVAGPGFINIRLVSDAWRDE
                     LRTIIRRGDEYGLSTIGANERVNVEYVSANPTGPLHMGHCRGAVVGDSLARLLEAAGF
                     RVTKEYYVNDAGKQVDTLARSVHLRYREALGEEIGEIPEGMYPGDYLAPVGTILASKY
                     GDDYVGKPEAEWLPVFRRAAITAMLDLIRHDLSLLNIHHDKFSSEDELQKSGAVSEAL
                     EVLRSKGLVYAGTLERPKSLDEQDEWEPVELTLFRSMQFGDDQDRPIKKSDGSWTYFG
                     ADAAYHWQKARSADHLVNIWGADHAGTVKRVQAAVRALTDGRVDLDVKLVQMVRLFRG
                     GEPVKMSKRAGDFVTLAEVVNEVGRDVVRFMMLTRRADAPLDFDFVKVVEASKDNPVF
                     YVQYAHARISSLNRKAADVGVDRSQAADLSLLDEEELALVRRAAQYPRIVEGAALAHE
                     PHRIAFFLYDLAAEFHALWNRGNDDPQRRFLLEKNPQLSRARLELANGIAQIIRSGLE
                     LMGVAATEEMR"
     gene            2296..3054
                     /locus_tag="VE968_00050"
     CDS             2296..3054
                     /locus_tag="VE968_00050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50242.1"
                     /translation="MTIDAAAVDRLPWLADEPSGISRVERHPRRLLLGAAAALGLVAI
                     AGFWITVESANDSDVPAIRHEPASVTIPLPPARTVVSPQVQFPVEKEVRPVSVTKPNQ
                     GPASEATIASAAHGKASQHSRHGRQTLSRKSADRHSSNAAATSYSSRSRRVEAERKRP
                     VLAAAAGRQVQIGAFGSIAQARRGWQFMVRQYPAMAGLPIMVRPSRNSKGRVFYRFHL
                     ATGSQARSELICQRMEKIKFSCAVKGLPKPKVQP"
     gene            3051..3737
                     /locus_tag="VE968_00055"
     CDS             3051..3737
                     /locus_tag="VE968_00055"
                     /inference="COORDINATES: protein motif:HMM:NF016895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HZU50243.1"
                     /translation="MTDERTFEEPLPWLAPVEDEDEPQAFSARRMLTALAVVVVAILI
                     IAGTFFWLGRHRSNVGGPPQLIKAPARPYKVRPPNPGGLNISAESETAFETSAGEDKD
                     SRLNLSRLPETPIAKPPKRAPAAEPSVPAPNDKNTDAALDDKGTDEAPATGGAGSVVQ
                     LGAFANQAQAERAWTALSTRFPTVAALNKMIVPYSGGIRLRAAAASPAEAKQVCQALK
                     AAGENCFVAR"
     gene            3734..>4017
                     /locus_tag="VE968_00060"
     CDS             3734..>4017
                     /locus_tag="VE968_00060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006833817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-hexosaminidase"
                     /protein_id="HZU50244.1"
                     /translation="MRQAAIYGIEGPALTSSERRFFRDVEPAGFILFRRNCASPEQLV
                     RLTGSLRELTGRDELPILIDQEGGRVARMRPPEWPAFPAAEKFANLYRVSP"
BASE COUNT          835 a         1219 c         1187 g          776 t
ORIGIN      
        1 gcgccatggc acggctcttt cctgacagtc gcggcgaggc ctttcgtcaa tccatcgttc
       61 ttacctgatc gcccgcggca gtatttcctt aaccttgctc gccgatatct cttgcatggg
      121 attcgagcgg accatggctg cagcaatcat cgtagcggca cttccgctcg ccgtcgcacc
      181 tgctcaagcc gcggcaaagg aaccgctaat cgttacaagg atggcggatc ccgaccccaa
      241 tttcgtgccg tcctcggacg actcgctgcg ccggaaaacc cacaagactg aagcagccga
      301 tgagaattcg cgtatcgatg aggcaatgat gaactttggc cgcgccattg gtcaggctgc
      361 gttgatcgaa cagcggcaga tcgaaaccaa atgtcgccaa ggacccggcg aaagttccac
      421 tcccgagcaa cggttcgact gggcggccac ctgccgatac acgcggcact gaacattggc
      481 ctggcataag tactcgcgcc acgcgtgacg ttcggcaaag cgtgcgctag aggcgccgct
      541 ttccaccagc ggtgcaccgg aattgagcct ctacgcccaa tatgccgcac tcctcgacgg
      601 agtgcttgat aaactgatcg ccgatggcgc gctgccgtcg gatcttgacc gcaagaatgt
      661 cacggtcgag cctccacgcg acactgcgca cggcgatctt gcaaccaacg ctgcaatggt
      721 gctcgcgaag gccgcgaata ccaacccacg cgcccttgcg gagatcatca agcgcgaact
      781 gcaggcaata ccgatggtca cttctgtcga agtggcaggg ccagggttca tcaacattcg
      841 tctcgtctcg gatgcgtggc gcgacgagct ccggacgatc attcgccgag gcgacgaata
      901 tgggctttcg acgatcgggg cgaatgagcg cgttaacgtg gaatatgtct cggcaaatcc
      961 gacgggtcca ttgcacatgg gtcattgtcg tggcgcggtc gtcggtgaca gtcttgcccg
     1021 gttacttgaa gccgcgggct tcagggtcac caaagaatat tacgtcaacg acgcgggaaa
     1081 gcaggtcgac acgctcgcta ggtctgtcca cctccggtat cgcgaggcgc tcggcgaaga
     1141 gattggcgaa atcccggagg gaatgtaccc aggtgattat ctggcacccg tcggcaccat
     1201 tctcgcaagc aaatatggtg acgattatgt tggaaagcct gaagctgagt ggcttccggt
     1261 gttccgacga gcagcaatca ctgccatgct cgacctcatt cgccacgact tgtcgttgct
     1321 caacatccac catgataaat tctcatccga agacgagctc cagaagagcg gagcggtcag
     1381 cgaagcactc gaggtgcttc gctcaaaagg actggtttac gcgggaaccc tcgagcgtcc
     1441 caagagcctg gatgaacagg acgagtggga gcctgtcgag ctcacgttgt tccgctccat
     1501 gcaatttgga gacgatcagg accggccgat caagaagtcc gacggaagct ggacctattt
     1561 tggcgcggac gctgcctacc attggcagaa ggcacgctct gccgaccatc tcgtcaacat
     1621 ctggggtgcc gatcacgccg gcacggtgaa gcgcgttcag gcggcggtaa gggcgcttac
     1681 cgacggtcgc gtcgatctcg acgtgaagct cgtccaaatg gtgcgcctgt tccgtggtgg
     1741 cgaacccgtc aagatgtcca agcgcgcggg cgacttcgtc acgctcgccg aagtcgtcaa
     1801 cgaagtcgga cgagatgttg tccgtttcat gatgttgacc cgtcgcgcgg atgctccgct
     1861 cgatttcgat ttcgtaaagg tcgtcgaagc ctccaaggac aatcctgtat tctacgtcca
     1921 atatgcgcat gcgcgcatta gttcgctgaa ccgcaaagcg gccgatgtcg gcgttgatcg
     1981 ctcgcaggcc gcagacctct cgcttcttga tgaagaggaa cttgcacttg ttcgacgcgc
     2041 agcccagtac ccgcggatcg ttgagggcgc tgccctagcc catgaacctc accggattgc
     2101 ctttttcctc tacgatcttg ccgctgagtt ccacgcactg tggaatcgtg gcaacgacga
     2161 tccgcaacga cgctttctgc tggagaagaa tccacaactt tctcgcgcgc ggctggaact
     2221 cgcgaatgga atcgcgcaga tcattcgaag cgggctcgaa ctcatgggcg tcgccgcaac
     2281 cgaggagatg cgttgatgac catcgatgcg gccgccgttg accggctgcc gtggctggcc
     2341 gacgaaccgt caggcatctc ccgagttgag cgccaccccc ggcgcttgtt gctgggcgcg
     2401 gccgcagctc ttggattggt tgcaatagca ggattttgga tcacggttga aagcgccaat
     2461 gatagcgatg tgcccgccat tcgacatgag cccgcctcgg tgacaatccc gctgccgcca
     2521 gcgcgaacgg ttgtttcacc gcaagttcaa ttccccgttg aaaaagaagt aaggccggtt
     2581 tccgtcacga agccgaacca agggcccgcg agcgaagcga cgattgcgtc ggccgctcac
     2641 ggcaaagctt ctcagcactc gcgccatggt cgtcagacac tcagccgcaa gtccgccgat
     2701 cgccattctt caaatgccgc tgcaacaagc tactcttcaa gatcgcgacg cgtcgaagcg
     2761 gagcgcaagc ggcctgttct tgccgctgcc gcaggccgtc aggttcagat cggtgcattc
     2821 ggttcaattg cgcaagcaag gcgaggctgg cagttcatgg tgcgccaata tcctgcgatg
     2881 gccgggctcc cgatcatggt gaggccgagc cggaactcga aaggacgcgt cttctaccgc
     2941 ttccaccttg caacagggtc gcaggcgcgt tcggagctaa tttgccagcg catggagaag
     3001 attaagttca gctgcgccgt taaaggtctt ccaaaaccaa aggttcaacc gtgaccgacg
     3061 agcgcacatt cgaagagccg ctaccctggc ttgctccagt cgaggatgag gacgagccgc
     3121 aggcattttc cgcgcgccga atgctgaccg cgcttgccgt cgtcgtggtt gcgatcctca
     3181 tcattgccgg aacattcttc tggctgggac ggcatcggag caacgtcggc gggccgccgc
     3241 agctcatcaa ggcaccagcc agaccctaca aagtccgacc tcctaatccc ggtggactca
     3301 acattagcgc tgagagcgag actgcgttcg agacaagtgc gggcgaggac aaggattcgc
     3361 gtcttaatct aagcaggcta cctgagactc cgattgcaaa gccgccgaag cgcgctcccg
     3421 cggcagaacc gagcgttcct gcaccgaacg acaagaacac cgacgccgcg cttgacgaca
     3481 aaggaaccga tgaggcgccg gccaccggcg gcgctggaag cgtcgttcag ctgggagcat
     3541 tcgcgaacca ggcacaggct gaacgggcct ggacggctct ttcgacgcgc ttcccgactg
     3601 ttgcagcgct gaacaagatg atcgttccgt actcgggcgg gattagattg cgtgccgcgg
     3661 cagcatcgcc ggccgaggcg aagcaggtct gccaggcatt gaaagccgcc ggcgagaatt
     3721 gtttcgttgc acgatgaggc aggcggcgat ttacggtatt gaagggccgg cgctcacgtc
     3781 gagcgagcgc cgcttcttcc gcgacgttga acccgccggt ttcattcttt tcagacgcaa
     3841 ttgcgcgagt cccgaacagc tcgttcgcct tacaggctcg ctgcgcgagc ttaccggacg
     3901 cgatgaactg ccgatcctca tcgatcagga gggcggccgt gtcgcacgaa tgcggccacc
     3961 ggaatggccg gcattcccgg ctgccgagaa attcgcaaat ctttatcgag tctcgcc
//
LOCUS       DASRBJ010000003         2897 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_659727,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000003 DASRBJ010000000
VERSION     DASRBJ010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2897
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_659727"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..418)
                     /gene="mscL"
                     /locus_tag="VE968_00065"
     CDS             complement(<1..418)
                     /gene="mscL"
                     /locus_tag="VE968_00065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HZU50245.1"
                     /translation="MLKDFRAFIAKGNVLDLAVAVIIGAAFAKIVSSLTDDIIMPVIG
                     KIFGGFDFSSHFTMLGPVPADYHGSLRDYAALKKAGAPVLGWGEFLTQVVNFLILAFI
                     IFLMVRWATRLMRRGDEPTLTKGPSEVELLAEIRDEL"
     gene            568..1167
                     /locus_tag="VE968_00070"
     CDS             568..1167
                     /locus_tag="VE968_00070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009820905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HZU50246.1"
                     /translation="MTAVRRSALLAPLVALSVASCGINSVPTAEEEVNAKWGDLQADY
                     QRRADLIPNLVATVKGYAQQEKTVLTQVTEARAKATSVQLNAGDLSDPAKVQAFQNAQ
                     SQLSGSLGRLLVSVEAYPDLKSNQNFLALQDQLEGTENRIEIARRDYNEAVRQYNTLI
                     RTFPTAVGAKIFYGAKPKVPFEAAAAAQQAPTVSFGNGS"
     gene            1169..1996
                     /locus_tag="VE968_00075"
     CDS             1169..1996
                     /locus_tag="VE968_00075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009820904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HZU50247.1"
                     /translation="MRHALGALLLAFLALAAPARAQTFPPLTGRVVDQAHLLSAAEIQ
                     DLTAKSQALETQTGRQFVIATVNSLEGYPIEDYGYRLGRAWGIGQKGQDNGVILLVAP
                     NEHKVRIEVGYGATTFITDAVSGLIIRETILPHFKQSPPDYAGGIEAGADAIIKQMSL
                     PPDQAQKNVAAAEQAQQQRQHSSGNPLPVVFWFLVIGFVVLSHLRRAFGRRYRTRSGG
                     ISPWVMLWGLNALSGGSRGSGWGGGSFGGGGWSGGGGFGGFSGGGGSFGGGGASGSW"
     gene            1990..2667
                     /locus_tag="VE968_00080"
     CDS             1990..2667
                     /locus_tag="VE968_00080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007687099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HZU50248.1"
                     /translation="MVMQLTDVDRQKVSAAIAAAEAKSSGEIVAVATPISDAYHDVAL
                     HWALIPLFAVLAWAAWRPTALLWWYDFLFGGWQPDPTMSELLTLLMVLAALKFTVALL
                     ILKWMPLRLVLTPPATKHRRVRRRAITIFKAAAEGRTTGRTGILIYLSMAERRAEIVA
                     DEAILKLTDEHTWGEAMTALIADVREGRPADGIVAAIERVGTVLAEHFPRSADDRNEI
                     PDSLIEL"
     gene            2664..>2897
                     /locus_tag="VE968_00085"
     CDS             2664..>2897
                     /locus_tag="VE968_00085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50249.1"
                     /translation="MKLEDLPPAEIMWEGKFVRALRRGHWEYASRARNIGAVVILAEH
                     DRKFILVEQPRVAPDCRCIELPAGLVGDNDPNAT"
BASE COUNT          576 a          863 c          896 g          562 t
ORIGIN      
        1 gcagttcgtc cctgatctcg gcgagaagct cgacctcgct cggacctttt gtcaaagtcg
       61 gctcatcgcc gcgcctcatc agcctagttg cccaccgaac catcagaaaa atgatgaagg
      121 cgaggatgag gaagttgacg acctgggtga ggaattctcc ccaaccgagc actggcgcgc
      181 ccgccttctt gagcgccgca taatcgcgca atgaaccatg ataatcggcg gggacgggcc
      241 caagcatggt gaagtgactt gaaaaatcga atccgccaaa gatctttccg atgacgggca
      301 tgatgatgtc atccgtcagg ctgctgacga tcttcgcaaa ggcggcgccg atgataacgg
      361 cgacggccag atcgagaaca ttgcctttgg cgatgaatgc gcggaagtcc ttgagcattg
      421 cgcctttctc ctcctcgtct cgcgcgaagt catagcgcaa caacaaccat tccgcacgtg
      481 cgactagtgt attgctgtga tattacagca ttgaaagcgc gcagcggccg ttctaattag
      541 cgccgcgaat taatgagggg atcattcatg actgcagttc gccgttcagc tttgctcgcg
      601 ccactggtcg cgctcagtgt tgcgagctgc ggcatcaaca gcgtcccgac cgccgaagaa
      661 gaggtcaatg cgaagtgggg cgacttgcag gccgactacc agcgccgtgc cgacctcatt
      721 cctaatcttg tcgcaaccgt gaagggctat gcacagcagg aaaagacggt gttgacgcag
      781 gtgactgaag cgcgcgccaa ggcgacgagc gtccagctta acgcgggtga tctaagcgat
      841 cccgcaaagg tgcaggcgtt tcaaaatgcg caaagccagt tgagcggatc actcggtagg
      901 ctccttgtca gcgtcgaggc ttatcccgat ctcaagtcga accagaattt cctggcgctc
      961 caggaccagc tcgagggaac cgagaaccgg atcgagattg cacgtcggga ctataacgag
     1021 gccgtacgac agtataacac gttgatccgc accttcccga ccgccgttgg cgccaagata
     1081 ttctatggcg caaagcccaa ggttccattc gaagcagccg cggcagcgca gcaggcgccg
     1141 accgtcagct tcgggaacgg cagctaaggt gcggcacgcg cttggcgctc tgctgcttgc
     1201 gttcctcgcg ttagcggctc ctgcaagagc acaaaccttt ccgccgctaa ccgggcgcgt
     1261 cgtcgaccaa gcacacttgc tgagtgcggc ggagatccag gaccttaccg ccaagtctca
     1321 ggcgcttgag acgcagaccg ggcgccagtt cgtcattgcc accgtcaaca gcctcgaggg
     1381 ctatccgatc gaggattatg gctaccggct cggccgtgcg tggggaatcg gacaaaaagg
     1441 gcaggacaat ggggtaatcc tgcttgttgc ccccaatgaa cacaaggtcc gcatcgaggt
     1501 cggctacgga gcaaccacct tcatcacgga cgctgtgtcg ggactgatca tccgtgaaac
     1561 tatcctgccg catttcaagc aaagtccgcc cgattacgcc ggcggcatcg aggccggcgc
     1621 cgacgcgatc atcaagcaga tgtcgcttcc ccctgatcaa gcgcaaaaga acgtcgctgc
     1681 agccgaacaa gcgcagcagc agcggcagca ttcgagcggg aatccgctgc cggtcgtctt
     1741 ctggtttctc gtgattggtt tcgtcgtgct ttcgcacctt cgccgcgcgt tcggacgccg
     1801 gtaccggacg cgctctggcg gaatcagccc gtgggtaatg ctttggggac tgaatgcact
     1861 gagcggtggc tcacgcggca gtggctgggg tgggggatct ttcggcggcg gcggctggag
     1921 cggcggcggg ggcttcggtg gcttctccgg cggcggcggg tcgttcggcg gcggcggagc
     1981 ttcgggctca tggtgatgca acttaccgac gttgatcggc agaaagtctc ggctgcgatc
     2041 gcggcggccg aggccaagag cagtggcgag atcgttgcgg tcgcgacgcc gatcagcgac
     2101 gcctatcacg atgtcgcgct gcactgggcg ctcatcccgt tgtttgctgt cttggcgtgg
     2161 gccgcttggc ggcccaccgc tctcttgtgg tggtacgact tcctgttcgg cggttggcag
     2221 ccggacccga ccatgagcga gctcctcacc ttgctgatgg ttcttgcagc gctgaagttc
     2281 acggtggcgc tcctgatcct caagtggatg ccgctgcgtc tcgtgcttac gcctcccgcg
     2341 accaagcacc ggcgcgtccg gcgccgagcc atcaccattt tcaaggcggc ggccgaaggg
     2401 cgcacgactg gtcgaacggg aatcctcatc tatctgtcga tggccgagcg gcgcgccgag
     2461 attgtcgctg atgaagcgat actgaagctt acggacgagc atacctgggg cgaagcgatg
     2521 acggcactga tcgcggatgt tcgtgaagga cgccccgccg atgggatcgt tgccgccatc
     2581 gagcgcgttg gaacagtcct tgccgagcat ttcccgcgtt cggccgatga ccgcaacgag
     2641 ataccggact ccctgatcga attatgaagc tcgaagacct gcctcccgcc gagatcatgt
     2701 gggagggtaa attcgtccgg gcactgcgcc gcggacattg ggaatatgca agccgtgcgc
     2761 gcaatattgg cgccgtggtc atccttgccg aacatgaccg caagttcatc ctcgtcgaac
     2821 agcctcgagt ggcacccgac tgccgttgta tcgagcttcc ggccggtttg gttggagaca
     2881 atgatccaaa cgcaacc
//
LOCUS       DASRBJ010000004         3404 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_101926,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000004 DASRBJ010000000
VERSION     DASRBJ010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3404
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101926"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VE968_00090"
     CDS             <1..326
                     /locus_tag="VE968_00090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50250.1"
                     /translation="PLSYRTNRRIGGVAPSIYLQRLEAGQKDDPPISTAVMDAYLRTH
                     CIDPGLLRADAFDRFMKDREQRLLALVAKATGHDVVAVSGPADEEELPDNIAEDSGLL
                     ASAAA"
     gene            344..>3404
                     /locus_tag="VE968_00095"
     CDS             344..>3404
                     /locus_tag="VE968_00095"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HZU50251.1"
                     /translation="MAKKAIEVTALKHKAAKRKNIPTAEFESVMRPEDKTPIQIAIAR
                     RNRDLDPQLVWRGKDEQDWSDLVVQAPPLFIQEKVHPKVIIDDLKRETKARAEERAAQ
                     EAGSAAGATGTQKDFADLFADFNGLPDEEAKTEFYQHDANWSNRMIVGDSLQVMASLA
                     EREGLRGKVQCIYIDPPYGIKFNSNFQWSTTSRDVKDGAKDHITREPEQVRAFRDTWR
                     DGIHSYLTYLRDRLTVARDLLHESGSIFVQIGDENVHRVRALMDEVFGEENFISQVAF
                     KKTGGQSASAIANVTDILLWYSRDNSALKVRPLFFDKMPGEEGATNYNWVEEASGVRR
                     PLTTGEREGRQSLPKDARVMQPYPMFSDGPSARDRPFEWRGNEYKPSANAHWKTHAVG
                     LKRVDQADRFVAQGKTLRFVNYLDDFRVTPILNIWTDTQISGFGADRIYVVQTLPKVI
                     ERCILMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVAIALARSRLMGARYP
                     YYILADSPEGLRKEAEITGTPPKERATHGDIRMGFVYERVPHITLKSIANNAEIDVIW
                     EKWQPKVQGALDALNAALKGHATPFKAATGGRAGQAIDFRKEGTVKLPSGEDAPAGAL
                     LDWEVPREAPADWPKAALGPLAAFWEARIARQKEIDASIAAKAEFEYLYDKPYVDNSK
                     VRVAGPFTVESLSPHRTLAVDWNDELIDILKASEGKRAAPDRDEATTEFAQMILENLK
                     VAGVQQAHKEDRITFTSLVGWPGHYICAEGKFMEGEKERRAGIFIGPEFGTVSRPDLV
                     AAAREAGDAGFDVLIACAFNYDAHSAEFDKLGRVPVLKARMNPDLHMGGDLKATASGN
                     LFVIFGEPDMEVVSGQWLVTSGGRKVMNYERLAKLSGFGSLEEINRLGRSDLPHFKRL
                     AVGREVRSDPTDTPGGGVHSGQRGGRGGASGDTGISSVSGSSERVAGGGRNVSRVGGA
                     AELSEPGSSGRPAESSGGRRTHALRPDEIAAIEALTASDFPLSLTTDH"
BASE COUNT          711 a         1013 c         1096 g          584 t
ORIGIN      
        1 cgccactcag ctatcgaacg aatcggagga ttggcggcgt cgcgccctca atctatctgc
       61 agcggcttga ggcaggacag aaggacgatc cgccgatctc gacggcagta atggacgctt
      121 acctgcggac gcactgcatc gatcccggtt tgctgcgtgc cgacgcgttt gatcgcttca
      181 tgaaagatcg agagcagcgt ttgcttgcgc ttgttgcaaa ggcaacgggc catgatgttg
      241 ttgccgtgag tggtccggcc gatgaggagg agttgcccga caacattgcc gaggatagcg
      301 gcctcttggc cagtgcggcg gcgtgaagag aggggcgcac cggatggcca agaaggcaat
      361 cgaggtcacg gcgctgaagc acaaggccgc gaagcgcaag aacatcccga ccgcggaatt
      421 cgaaagcgtg atgcggccgg aggacaagac gccgatccag atcgcgatcg cccgccgcaa
      481 ccgcgatctt gatccccagc tcgtctggcg cggcaaggac gaacaggatt ggtccgatct
      541 cgtcgtccag gcgccgccgc tcttcatcca ggagaaggtg catccgaagg tcatcatcga
      601 cgacctcaag cgcgagacga aggcgcgggc ggaagaaagg gccgcccaag aggcggggag
      661 cgccgcaggc gcgacaggga cgcaaaaaga cttcgcggac ctcttcgccg acttcaacgg
      721 gctgccggac gaagaggcga agaccgagtt ctaccagcac gacgccaact ggtcgaaccg
      781 catgatcgtc ggcgacagtt tgcaggtgat ggcgagcctt gccgagcgcg agggcctgcg
      841 cgggaaggtg cagtgcatct atatcgatcc gccctacggc atcaagttca actcgaattt
      901 ccaatggtcc accacgagcc gcgacgtcaa ggacggcgcg aaggatcaca tcacgcgcga
      961 gccggaacag gtgcgcgcct tccgcgacac ctggcgcgac ggcatccact cctatctcac
     1021 ttatttgcgc gatcgcctga ccgtcgcgcg cgacctgctg cacgagtcgg gctcgatctt
     1081 cgttcagatc ggcgatgaga atgtgcatcg cgtgcgggcg ttgatggacg aggtgtttgg
     1141 ggaagaaaat tttatctcgc aagttgcttt caagaaaact ggaggccaga gcgcgtcggc
     1201 gatagcgaac gtcaccgaca ttttattgtg gtattcacgg gataactccg cacttaaggt
     1261 tcggccactc ttcttcgaca agatgcctgg ggaggaaggt gcaacgaatt acaattgggt
     1321 cgaagaagca tcgggagtcc ggcgccctct gactacaggc gaaagggagg gacgccaatc
     1381 actgccaaaa gacgctcgtg tcatgcagcc atatccgatg ttttcggatg gcccgtcagc
     1441 gcgtgatcga ccgttcgaat ggcgaggcaa tgaatacaaa ccatcagcca acgcacattg
     1501 gaaaacgcat gccgttggac tgaaacgcgt ggaccaggcc gacagatttg tcgctcaagg
     1561 aaagacgttg cgattcgtca attatctgga cgattttcgt gtcactccga tcctcaatat
     1621 ctggacagat acgcaaatca gtggatttgg agcagaccga atttacgttg ttcagacgct
     1681 gccgaaggtc attgagcgct gcattttgat gaccaccgac cccggcgatc tggtgctcga
     1741 tccgacctgc ggctcgggca ccacggccta tgtcgccgag caatgggggc ggcgctggat
     1801 caccatcgac acgagccgtg tcgcgattgc gcttgcgcgc tcgcggctca tgggcgcgcg
     1861 ctatccctat tacatcctcg ccgacagccc ggagggcctg cgcaaggaag ccgagatcac
     1921 cggcacgccg ccgaaggagc gcgcaacgca cggcgacatc cgcatgggct tcgtctatga
     1981 gcgcgtgccg cacatcaccc tgaagtcgat cgccaacaat gccgagatcg acgtgatctg
     2041 ggagaagtgg cagcccaagg tgcagggagc gctcgacgcg ctcaacgccg cgctcaaggg
     2101 ccatgccacg cccttcaagg ctgcgactgg cggacgcgcg gggcaggcga tcgacttccg
     2161 caaggagggc acggtgaagc tgccctcggg ggaggatgcg cccgcaggcg cgctgctcga
     2221 ctgggaggtg ccgcgcgagg cgccggccga ttggccgaag gccgcgcttg ggccccttgc
     2281 cgccttctgg gaagcgcgga ttgcgcgcca gaaggagatc gacgcgtcca tcgccgccaa
     2341 ggccgagttc gaatacctct acgacaagcc ctatgtggac aattccaagg ttcgcgtcgc
     2401 tggccccttc acggtcgaga gcctgtcgcc gcaccgcacg ctcgcggtcg attggaacga
     2461 cgagctgatc gacatcctga aggcatccga gggcaagcgc gccgcgcccg accgcgacga
     2521 ggcgacaacc gaattcgcgc agatgatcct cgaaaacctg aaagtggccg gtgtgcagca
     2581 ggcgcacaag gaggaccgca tcaccttcac gagccttgtc ggctggccgg gccactacat
     2641 ctgcgccgaa ggcaagttta tggagggcga aaaggaaagg cgcgccggca tcttcatcgg
     2701 cccggagttc ggcaccgtct cccgccccga tctcgtcgcc gccgcccgcg aggcgggcga
     2761 tgccggcttc gatgtgctga tcgcctgcgc cttcaattac gacgcccatt ctgccgagtt
     2821 cgacaagctc ggccgcgtgc cggtgctcaa agcccgcatg aaccccgacc tgcacatggg
     2881 cggcgatctc aaggccaccg cctcgggcaa tctgttcgtc atcttcggcg agccggacat
     2941 ggaagtggtc agtggtcagt ggcttgtgac cagcggcggc aggaaggtca tgaactatga
     3001 gcggcttgcg aagctttcgg gatttggaag tctggaagaa atcaatcgac ttggccgaag
     3061 cgatctaccg cacttcaagc ggctggccgt cggacgagag gttcggtctg atccaacaga
     3121 tacgccgggc ggcggcgtcc attccggcca acgtggcgga aggggcggag cgtcagggga
     3181 cacgggaatt tcttcagttt ctgggagtag cgaaagggtc gctggcggag gtcgaaacgt
     3241 ttctcgtgtt ggcggagcgg ctgagctatc tgagccagga agcagcggcc ggcctgcgga
     3301 atcaagcggc ggacgtcgga cgcatgctct ccggcctgac gagatcgctg cgatcgaagc
     3361 tctgaccgca agcgacttcc cgctttcact gaccactgat cact
//
LOCUS       DASRBJ010000005         6254 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_204100,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000005 DASRBJ010000000
VERSION     DASRBJ010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6254
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204100"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(197..778)
                     /locus_tag="VE968_00100"
     CDS             complement(197..778)
                     /locus_tag="VE968_00100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HZU50252.1"
                     /translation="MPSIPNARVLIVATDGFEEWELFGPRQILQQRGAEVVLASLKLD
                     PIQGTVHDDPGKTIRPDMTIDDVRPEDFDALILPGGVRNPDQLRVHGNVIGLIRMFAE
                     EGKPIGAICHGPWLLVEADLVDGRTVTSWPSIRTDLRNAGANVVDEPSVTDGKIVTSR
                     KPDDVEAFTGALIDLIEDMPEVEEVREAHELPA"
     gene            870..1913
                     /locus_tag="VE968_00105"
     CDS             870..1913
                     /locus_tag="VE968_00105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IB"
                     /protein_id="HZU50253.1"
                     /translation="MLRHSSDAEPGITRRRIGRYWGYFDAEGNRITDRDEIDRLNSIG
                     LPPAYVDAWFCADPDGHLQATGIDARGRKQYRYHPLFREKRDSAKYEGLLEFGKALPR
                     LRRRVEEDLRRRKLDRETVLAAIVRLLDTEHIRIGNEQYAKTNKSYGATTLRSRHLKR
                     KGQSLHMRFTGKHGIVHEVTITDSNLKRICKRCQELPGQMLFQYVNGDGDPKPVTSGD
                     VNDYIKNATGGDFTAKHFRTWSASVIAFEQMLKKAEDARITVKTVVEPVAEALGNTPA
                     ISRKSYVHPGLLNAVKENPRDPLDGMERPKGTKRLSSAEVGLLEFLARGAKRGRRRNA
                     ANRRVTVEQQAAA"
     gene            1952..2992
                     /locus_tag="VE968_00110"
     CDS             1952..2992
                     /locus_tag="VE968_00110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019053542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HZU50254.1"
                     /translation="MTSLANSVEVNRAGLLIGISAAAALVLFMLVVRRIGQGILSRDP
                     EGLGWRSVVGRVLAKTSLSFMILSAADVVTTYAGLPPKIARLIHYAFVIGFFLQGAVW
                     VRELILGFIGRKVAEEQGAGTLGNAMAVIRVLISVVLFAVAGILILENLGVNVTALIA
                     GLGIGGIAIGLAAQGIFSDLFAALSILFDKPFKKGDTIRYDQSTGTVERIGLKTTRLR
                     AMTGEQLVMANTKLLDREIHNLTAAKGRRITLYLAISGEISTAVVDFVVAAAEHAVEG
                     RKGCKLVRCTLSGAGGGGLMFDLVYDDATRDADKLANDRAEILRALIAELSERKLQLV
                     RASDLPPAPIPL"
     gene            3122..3577
                     /locus_tag="VE968_00115"
     CDS             3122..3577
                     /locus_tag="VE968_00115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HZU50255.1"
                     /translation="MPLADLALIASNVGQEVGVSSWLTIDQSRIDAFADATDDRQFIH
                     VDEIAAAKTPFGGTIAHGFLSLALLSRMGAEAMLIPTGAKMAVNYGFERVRFVTPVRS
                     GKRVRGRFFLEAIDQKAPDQLLMRHRVTVEIENEEKPALTAVWLGLIFT"
     gene            3588..4763
                     /locus_tag="VE968_00120"
     CDS             3588..4763
                     /locus_tag="VE968_00120"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HZU50256.1"
                     /translation="MRDAVIVSTARTGIGKAYRGAFNATPSPTLAAHPIRAAVERAKL
                     DPAEIDDVIMGAALQQGVQTTIGRTASLRAGLPVSVAGMSIDRQCSSGLMSIATAAKQ
                     VIVDRMDVVVAGGVESISLVQTGEMRLGPDPELLSMHNGVYMPMIDTAEVVGKRYSIS
                     RERCDEYALRSQQRTAEAQRTGKYADEIIPVTTKMAVENKETGEVSMREITLDRDEGN
                     RPGTTLEDLARLEPVRGPEKIITAGNASQLSDGASAVVVMEASLAEKRGLRPLGRYVG
                     MAVAGTEPEEMGIGPVFAVPKLLKRFGLKVEDIGLWELNEAFAVQVLYCQDKLGIPDE
                     LLNVNGGAISIGHPYGMSGARMVGHALIEGKRRNAKHVIVTMCVGGGMGAAGLFEVL"
     gene            4814..5065
                     /locus_tag="VE968_00125"
     CDS             4814..5065
                     /locus_tag="VE968_00125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007684754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50257.1"
                     /translation="MPESNRPLVERVARVLAGAAHSSNAEGSDPSAGDKVDKVWREHV
                     NQALAVLHTMREPDEAQAAAGDADVWRNMVEAALAERID"
     gene            complement(5332..>6254)
                     /gene="phaZ"
                     /locus_tag="VE968_00130"
     CDS             complement(5332..>6254)
                     /gene="phaZ"
                     /locus_tag="VE968_00130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="polyhydroxyalkanoate depolymerase"
                     /protein_id="HZU50258.1"
                     /translation="LIVAPMSGHYATLLRGTVERLLPSCDVYITDWRDAKLVPLSDGS
                     FDLDDYIDYLVEYLELIGKKTGARPHMLAVCQPAVPAFAATALMGEDRNPFRPKSLTM
                     MGGPIDTRQAPTAVNTLATRRPFSWFENNVIATVPMIYPGAGRKVYPGFLQLAGFMTM
                     NLGSHLISHWEMFKHLVVGDEESAASTQKFYDEYRSVCDMTAEFYLQTVDVVFQRHLL
                     PKGEMEHRGRLVRPDAIRDTALLAIEGERDDISGLGQTKAALDITTRLPRSKKEYFVA
                     KDVGHYGIFNGRKWREKIAPEVEKFLHSHS"
BASE COUNT         1316 a         1798 c         1901 g         1239 t
ORIGIN      
        1 aaccgagggc cgccgcgacg gccgcaagga tccgaagcgg aacttcctcg gcatgatcag
       61 cgaggaaaac gctcgtcgca aaggccgagg ccgcggcaaa cagcgccgcg gcaacaagct
      121 caacgccctt ctggatgcgc cccaacagtc tcgcgttcat taggcgagct gataggagca
      181 attcctttcc agtcggttag gcaggaagtt cgtgtgcctc ccgaacctct tcgacctccg
      241 gcatgtcctc aatgagatca atgagtgcgc cggtgaacgc ttcgacatcg tccggcttgc
      301 ggctcgtcac gattttgccg tcggtcacgg aaggttcatc gaccacattc gcacccgcgt
      361 tccgaagatc cgttcggatc gacggccagc tggtgaccgt ccgaccatcg acgaggtcgg
      421 cttcgacaag gagccacgga ccatggcaga tcgcaccgat gggcttaccc tcttcagcaa
      481 acattcgaat gagtccgatg acattgccat ggacgcgcag ctgatcggga ttgcgaacgc
      541 cgccgggcag gatgagcgcg tcgaagtcct cggggcgcac gtcatcgatc gtcatgtcgg
      601 ggcggatcgt cttgcccgga tcatcatgca ccgtaccctg gatcgggtcg agcttgagcg
      661 aggcaagcac gacctcagcg cccctttgtt gaaggatctg tcgtggtccg aagagttccc
      721 actcctcaaa gccgtcagtt gcgacgatga gtacacgggc gttcggaatg gacggcatgg
      781 ggatctcctt tagtgtgtag caggaacccg ccctcgcgcc actcgcttat gcgggttgat
      841 gactagtgta aaacccacga cacgcgaaaa tgcttcgtca tagcagcgac gccgagcccg
      901 ggatcacgcg gaggagaatt ggccgctact ggggctattt cgacgccgaa ggcaatcgaa
      961 tcaccgaccg cgacgagatc gatcggctta attcgatcgg tttaccgccg gcctatgtcg
     1021 atgcgtggtt ctgcgccgat cccgacgggc acctccaggc gaccggcatc gatgcccgag
     1081 gccgcaagca atatcgttat catccgctgt ttcgcgagaa gcgggacagt gcaaaatacg
     1141 aagggctgct tgagttcggt aaggccttgc cgcgacttcg ccgacgcgtt gaagaggatc
     1201 taaggcgccg gaaactcgac cgcgagacgg ttcttgccgc aatcgtccgg cttctcgaca
     1261 ccgagcacat tcgcatcggc aatgaacaat atgcgaagac gaacaagagc tacggggcaa
     1321 cgacactcag aagccggcac cttaagcgca agggacaatc actgcacatg cgcttcacgg
     1381 gcaagcacgg catcgttcac gaagtgacga tcacggactc aaacttgaag cgtatctgca
     1441 aacgatgcca ggaactgcct ggccagatgc tctttcagta cgtcaacggc gatggcgacc
     1501 cgaaaccggt cacctcgggc gacgtgaacg attatatcaa gaatgccact ggaggtgact
     1561 ttaccgccaa gcatttccgc acctggagcg cgagtgtcat tgctttcgag caaatgctga
     1621 agaaagcgga ggatgcccga attacggtga agacagtggt tgagccggtc gcggaggccc
     1681 ttggcaacac gccggcaatc agccgcaagt cctatgttca tccggggttg ctgaatgccg
     1741 tcaaagaaaa tccgcgcgat ccgctcgatg gcatggaacg tcccaaaggc accaagcgcc
     1801 tctccagtgc cgaggtgggg ctccttgaat tcctcgcgcg tggcgcaaaa cgtggccgcc
     1861 gacgcaacgc tgccaatcgg cgggtcaccg ttgaacaaca agccgccgct tgattggggc
     1921 gatcctcacc gccaagattg gaagcatggg ggtgacgagc ttagccaatt cggtggaggt
     1981 aaaccgcgca ggactgctga tcggcattag cgccgctgcg gcgctcgtgc tcttcatgct
     2041 tgtcgttcgt cggattggac aaggcatatt gtcgcgcgac ccggaaggtc ttggctggcg
     2101 cagcgtcgtt ggtcgcgtgc tcgcaaagac cagcctctcg ttcatgattc tgtccgctgc
     2161 cgacgtggtc acgacttacg ctggtcttcc gcccaagatc gcccggctca tccactatgc
     2221 cttcgtcatt ggattttttc ttcaaggcgc ggtctgggtt cgcgaactca tccttgggtt
     2281 tattggccgc aaggttgccg aggaacaggg cgccggaacg cttggcaatg cgatggccgt
     2341 catacgggtc ctcatcagtg tcgttctgtt cgccgttgcg ggcatcctca ttctcgagaa
     2401 tctgggcgtc aacgtcacgg cgctcattgc tggtttaggt atcggcggca ttgcgattgg
     2461 ccttgccgca cagggaatct tctcggatct gttcgctgcg ctatcgatcc ttttcgataa
     2521 gccgttcaag aagggcgata caattcgcta cgaccagagc actggcaccg tcgaacgcat
     2581 tggcctcaag acgacgagat tacgggcgat gacgggggag cagctggtca tggcgaacac
     2641 caagctcctc gatcgcgaaa ttcacaatct tacggccgct aagggccggc ggatcacgct
     2701 ctatcttgca ataagcgggg aaatctcgac tgcggttgtc gatttcgtgg ttgcggctgc
     2761 cgagcatgcg gttgaaggca ggaagggctg caagctggtt cgctgcacgc tctcgggcgc
     2821 gggaggcggt ggtctcatgt tcgatctcgt ctatgacgat gcaacgcgcg acgcggacaa
     2881 gctcgcgaat gatcgtgccg agatcttgcg agcgctgatc gccgagcttt ccgagcgcaa
     2941 actgcagctg gttcgcgctt ccgatctgcc gcctgcaccg atcccgcttt agattttgcg
     3001 cgtccggtgg ctggcggcga gaatgttggc gacggtcgcg gcatccaagc tcgtattatg
     3061 cgttatcgat ctttagccct tttggattgc ctcttattca cacccctgca aataagtagg
     3121 aatgcccctc gccgatctcg cgctcatcgc cagcaatgtc gggcaagaag tgggcgtttc
     3181 gtcatggctc acgattgacc agtcacggat agacgcgttc gccgacgcaa ccgatgaccg
     3241 gcagttcatt catgtggacg agattgcggc cgcgaagact cccttcggcg gcactattgc
     3301 acatggattt ctgtcactgg cgctgctctc gcgcatgggt gctgaagcca tgctcatacc
     3361 cactggcgca aagatggccg tgaattacgg cttcgagcgc gtccggttcg tcactccggt
     3421 acgttccggt aagcgcgtgc gcggtcgctt cttccttgaa gccatcgacc agaaggcgcc
     3481 agaccagctt ttgatgcgtc accgcgtgac tgtcgagatc gagaacgaag agaagccggc
     3541 gctcactgcc gtttggctcg ggctaatatt cacttaagga gacacaaatg cgagacgccg
     3601 tcatcgtttc gaccgcgcgc accgggatcg gaaaggccta tcgcggagca ttcaatgcga
     3661 cgccgtcgcc gacgcttgcc gcgcatccaa tccgtgctgc cgtcgagcga gcgaagcttg
     3721 atccggctga aatcgacgac gtgatcatgg gcgccgcgct ccagcagggc gtgcagacta
     3781 caatcggtcg aacggcctcg ttgcgcgcgg gattgccagt ctctgtcgcc ggcatgtcca
     3841 tagaccgcca gtgttcatcg gggctcatgt ccattgcaac cgcggcaaag caggtgatcg
     3901 tcgaccgaat ggacgtagtg gtcgccggtg gcgtcgagag catcagcctc gttcagaccg
     3961 gcgagatgag gctcggtcca gatccagagc tcctgagcat gcacaacggc gtctacatgc
     4021 caatgatcga tacggccgaa gttgtcggca agcgctattc gatcagcagg gaacgctgcg
     4081 acgaatatgc gcttcgctca cagcaaagaa cggccgaagc gcagcggacg ggtaaatatg
     4141 cggacgaaat cattcctgtg accaccaaaa tggcggtcga gaacaaggag actggcgaag
     4201 tctcgatgcg cgagattacg ctcgatcgtg atgaaggaaa ccgtccggga acgacgctcg
     4261 aggatctcgc acggctcgag ccggttcgcg gacccgagaa gatcatcacc gccggcaacg
     4321 ctagccaatt gtccgatggc gcttcggcag tggtcgtgat ggaggcgtca ctcgccgaga
     4381 agcgcgggct gaggccccta ggccgctacg tcggcatggc ggtcgctggc accgaacctg
     4441 aggagatggg aattggaccc gtgttcgcag tacccaaatt gctcaaacga tttggtctca
     4501 aggtcgagga tatcggtctg tgggagctga acgaggcatt cgccgtgcag gtgctatact
     4561 gccaggacaa gcttggaatt cccgacgagc tactgaacgt caatggcggc gcgatatcga
     4621 tcggccatcc ttacgggatg tccggtgcac ggatggtcgg ccatgcgttg atcgaaggaa
     4681 agcgccgcaa cgctaagcac gtaatcgtca cgatgtgcgt cgggggcgga atgggcgctg
     4741 caggactctt cgaagtcctc tgaaaccgcg tggcgggcaa gcgggttgaa acggtagaac
     4801 ggaggaatga tccatgcccg agtccaaccg tccgctcgtg gaacgcgtcg cgcgcgttct
     4861 tgcgggagca gcacatagca gcaacgctga gggaagcgat ccttccgccg gcgataaggt
     4921 cgacaaggtc tggcgcgaac atgtgaacca ggcgcttgct gtgcttcaca cgatgcgcga
     4981 gcccgacgaa gcacaagcgg cggcaggcga tgccgacgtc tggcgaaaca tggtcgaggc
     5041 agcgcttgcg gaaaggatcg actaggctcc ccccgtttcg cctagctcat tgcatcgccg
     5101 cacagcaacg gcacgattac gtagatagta aaaggccgcc cgggcattag cccgagcggc
     5161 ccctgacatt gtcgagccga aggtggcctg acgttaagca gcaaccccgc tggaggccgc
     5221 gctcaccact ttagccatat tcagccgttg acaatgagac atcagaccac ctcctttcgc
     5281 ttgtttgaac acaagcgaac agatggtgca tcgaagtgcg ttttcaagga cttaggagtg
     5341 agagtgaaga aacttctcga cttcaggagc aatcttctcc cgccatttgc gtccattgaa
     5401 gatgccgtaa tggccgacgt cctttgcgac gaaatattcc tttttcgatc gtggaagccg
     5461 ggtggtgatg tcgagcgcgg cttttgtctg gccaagcccg gatatgtcat cgcgttcgcc
     5521 ttcgattgcg agaagcgccg tgtcacgaat ggcgtctggc cgaacgaggc gtccacgatg
     5581 ctccatctca cctttgggca agagatgtcg ctggaacacg acgtcgacgg tttgcaggta
     5641 gaattccgca gtcatgtcgc acactgagcg atattcatcg tagaacttct gcgtcgaagc
     5701 ggcactttcc tcgtcgccaa ccacgaggtg cttgaacatc tcccagtgac tgatgaggtg
     5761 cgagccaagg ttcatcgtca tgaagccggc aagttggaga aagcccgggt aaacctttcg
     5821 gcccgcgccg ggatagatca tcggcacggt tgcgataacg ttgttctcaa accacgagaa
     5881 cggccgccgt gtcgcgaggg tgttcaccgc ggtcggagcc tggcgcgtgt cgatggggcc
     5941 gcccatcatg gtgagcgact tgggtcggaa cgggttcctg tcctcgccca tcagtgccgt
     6001 tgcggcaaac gccggcacag caggctggca gacggcaagc atatgcgggc gagccccggt
     6061 tttcttgcca atgagttcga gatattcgac gaggtaatcg atatagtcat cgagatcgaa
     6121 gctgccgtca gacaaaggaa cgagcttcgc gtcgcgccag tcggtgatgt agacgtcgca
     6181 gctcggcagc aatcgctcga ccgtgcctcg cagcagagtc gcatagtgtc ccgacatcgg
     6241 agcgacgatt aaaa
//
LOCUS       DASRBJ010000006         3298 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_1179,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000006 DASRBJ010000000
VERSION     DASRBJ010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3298
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1179"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2301)
                     /locus_tag="VE968_00135"
     CDS             complement(<1..2301)
                     /locus_tag="VE968_00135"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HZU50259.1"
                     /translation="MNDEPDVPPARGSSFINRIVAASLGQRVLVIVLTLLVLGAGLRA
                     WNRLPVDAYPDLSPPMVEIITQWPGHSAEEVERLITVPTEIAMNGIPHENNLRSISLY
                     ALSDVVITLDQNTDRNFAREQVFQRIGDISLPSGVTPSVTPLTSPSGLIYRYTLQSPD
                     RSPTELKTFEDWVVEPQFKSVPGVADDSGFGGGTMQYQVLLDQNRLAGAGLSPQQVES
                     ALTANNSNGGGGFYSEGGQFYYVRGLGRIQTVQDIENVVVAVHDGIPTLVKDVGRVAL
                     GIAPRLGEFGIGNENDAVEGVIMLRTGEKTQDVLKGVEAKTQELNTSILPKDVKVVPF
                     YDRSELVHQTVVTVEGNLLRGMLLVVVVLIFFLYDVRSGLIVAVTIPLSLLFAFACLD
                     LQNASANLLSIGAIDFGILVDAAVIMVENIYRRLAERGEGDANTLQIIRDAAAEVDRP
                     LVYSVVVIVVSFLPIYVLSGPSGVLFKPMADTMIFALIGSLLVTLALLPVLCSWLMRS
                     GVRERRNAIFERIRSAYTRGLDYCLGRPRGTALFSALLLVASLLVASDLGAEFMPHLD
                     EGALWVRATMPYTISFDESAKITPKIRAILASFPEVTTVASEHGRPDDGTDATGFFNA
                     EFYVGLKPYSEWHGAYHDKAALIAAIDKKLQSFPGITFNYTQPAEDAVDEAETGLKSA
                     LAVKIFGPDLNTLEEKGTQIKAVLGHVRGIHDVTLVQELGQPSLTIKVDREKIARYGI
                     NVDDINNLIQVAIGGDVATQVVQQEKE"
     gene            complement(2298..>3298)
                     /locus_tag="VE968_00140"
     CDS             complement(2298..>3298)
                     /locus_tag="VE968_00140"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HZU50260.1"
                     /translation="VQLYTVAPVAYHERIEAPGTVDFDNDQSTAVLSPFNGPVVRTLV
                     ALGQHVTKGQPLALVQSADYASALGTYRKAVVTARNAERLAAADRDLAAHNGISAREN
                     QQAQTDAASAVADREAALQTLISLNVDRGTIAAVNAGRQAVAPAAIIRAPVSGIVVDK
                     QVTPGQLLQAGSSQTFTVANLSQVWVLAQLSSSDLSKVAVHDLADIDPGNGSGIFHGT
                     VNNISASVDPNTRAVTARIVAPNPSGLLKKQMYVDVSIQSARATTGFLVPVSAILRDE
                     ENLPFVYVALSDGSFARRHVTLGYRDSQHYDVTSGLSSGERIVANGAIFLQFMQSQ"
BASE COUNT          683 a          973 c         1007 g          635 t
ORIGIN      
        1 ttccttttcc tgctggacga cctgcgttgc gacatcgcca ccaattgcga cctggatcag
       61 gttgttgatg tcgtcgacat tgatcccgta gcgcgcgatc ttctcgcgat cgaccttgat
      121 ggtgaggctc ggctggccga gctcctgcac caacgtcacg tcatgaatgc cgcgcacgtg
      181 cccaaggacc gccttgattt gggtgccctt ctcctcgagc gtattgagat cgggtccgaa
      241 tatcttcacg gcgagcgcgc ttttgaggcc ggtttcggct tcgtcgaccg cgtcttccgc
      301 aggctgcgtg tagttgaagg ttataccggg aaacgattga agtttcttgt cgattgccgc
      361 gattagcgcc gccttgtcgt gataggcgcc atgccactcg ctgtacggct tgagccccac
      421 gtagaactcg gcattgaaga agcccgtcgc atccgtcccg tcgtccggcc ggccatgctc
      481 cgatgcaacg gtcgtcacct cgggaaacga cgcgaggata gcgcggatct tgggggttat
      541 tttcgccgat tcatcgaacg agattgtgta gggcatcgtc gctcgaaccc acaacgcgcc
      601 ctcgtcgagg tgaggcatga attcagcgcc gaggtcggat gcgacaagaa gcgatgcaac
      661 aagaagcaag gccgagaaca gcgcggtgcc gcgcggccgt ccaaggcaat aatcgaggcc
      721 acgcgtatag gccgaacgaa tgcgctcaaa gatcgcgttc cgacgctccc gaacgccgct
      781 tcgcatgagc caggagcaca ggaccggaag aagcgcgagc gttacaagga gcgaaccgat
      841 cagcgcgaaa atcatcgtgt ccgccattgg cttgaagagg acccccgatg gtcccgacaa
      901 gacatagatc ggaaggaaac tgacgacgat taccacgacc gaataaacga gcggccggtc
      961 aacctcggcc gccgcatcgc gaatgatctg caacgtgttc gcgtcgccct cgccgcgctc
     1021 cgcgaggcga cggtagatgt tctcgaccat gatgaccgcg gcatcgacaa ggatgccgaa
     1081 gtcaatcgcg ccgatcgaca gcaggttggc ggaagcattc tggagatcga gacaggcgaa
     1141 cgcgaacaga agcgacagcg ggatcgtcac ggcgacaatc agcccggaac gaacgtcgta
     1201 gaggaagaag atcaacacga cgacaacgag gagcattccg cgaaggagat taccttcgac
     1261 ggtcactacc gtctggtgaa caagctcgga gcggtcgtaa aacggcacaa ccttcacatc
     1321 cttgggaagg atgctggtgt tgagctcctg cgtcttcgct tcgactccct tgaggacgtc
     1381 ctgcgtcttc tcgccggtcc ggagcatgat gacgccttcg accgcatcat tttcgtttcc
     1441 aattccgaac tcgccaagcc gcggcgcaat ccccagggct actcggccaa cgtccttcac
     1501 cagtgtcgga attccgtcat ggacggcgac gacgacattt tcgatgtcct gcaccgtctg
     1561 gatgcggccg agcccgcgca cgtagtagaa ctggccgcct tccgagtaga atccgccacc
     1621 accattgctg ttgtttgccg taagcgcgga ctcgacctgc tgcggcgata gtcctgcgcc
     1681 cgccaagcgg ttctggtcga gcagcacctg atattgcatt gttccgccgc caaacccgga
     1741 atcatcggca acgcccggaa cagacttgaa ctgtggctca acgacccaat cctcgaaggt
     1801 cttgagttcg gtcggcgagc gatcaggact ttgcagggta taacgataga tgagccccga
     1861 cggcgaggtc agcggtgtca ccgacggggt cactccggac gggagactga tgtcgccgat
     1921 ccgctggaac acctgctcac gcgcaaaatt gcgatcggtg ttctggtcga gcgtgatcac
     1981 cacatcggaa agagcataaa gcgaaatcga gcggagatta ttttcgtggg ggataccgtt
     2041 catggcgatc tcggttggaa ccgtgatcag ccgctcgact tcttcggcgg aatggccagg
     2101 ccattgcgta atgatctcga ccatcggcgg cgagaggtcg ggataggcat cgaccggcag
     2161 tcgattccaa gctcgaaggc ccgcgccaag aacgagcagg gtgagaacaa tcacgagcac
     2221 tcgttggccg aggctcgcgg cgactattct gttgatgaac gaggaacccc tcgccggcgg
     2281 cacgtccggt tcgtcgttca ttggctctgc atgaactgga ggaatattgc tccattggcg
     2341 acgatccgct cgccactcga aagcccgctg gtcacgtcgt aatgctggct gtcgcgatag
     2401 ccgagcgtca catggcgccg cgcgaagctc ccgtcggaaa gcgcgacata gacaaagggg
     2461 aggttctcct cgtcgcgaag gatagcagag acgggaacga ggaagcccgt cgtggcccgt
     2521 gccgactgga tcgagacatc gacatacatc tgtttcttga gcaggccgct agggttcggc
     2581 gcaacgatac gtgcggtgac tgcgcgggtg tttggatcca cgctcgcgga gatgttgttc
     2641 actgtaccgt ggaagattcc gctgccatta ccagggtcga tatcggcgag atcgtgaaca
     2701 gcaaccttgg aaaggtcact gctcgaaagc tgcgccagta cccacacctg tgaaaggttc
     2761 gcgaccgtga aggtctggct gcttccagcc tgaagaagct ggccaggagt gacctgcttg
     2821 tcgacgacga ttcctgagac gggcgcgcgg atgatcgctg ccggcgcgac cgcttgccgt
     2881 cccgcgttca ccgcggcgat cgtcccgcga tcgacgttca acgagatgag cgtctgaagt
     2941 gctgcttcgc ggtcggcaac ggcgctcgcg gcatccgtct gtgcctgttg gttctcgcgg
     3001 gccgagatcc cgttgtgtgc ggcaaggtcg cgatccgctg ccgcgagccg ctccgcgttg
     3061 cgtgcggtaa cgacggcttt gcgatacgtc cccaacgccg atgcatagtc ggccgattgc
     3121 acaagcgcca acggctgtcc tttggtcacg tgctggccga gcgcaacaag cgttcggacg
     3181 accgggccgt tgaacggcga gagcaccgct gtcgattgat cattgtcgaa atcgacggtg
     3241 cccggtgcct cgatccgctc atgataagca accggtgcaa cggtataaag ttgcacat
//
LOCUS       DASRBJ010000007         6574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_355823,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000007 DASRBJ010000000
VERSION     DASRBJ010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6574
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355823"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..226
                     /locus_tag="VE968_00145"
     CDS             <1..226
                     /locus_tag="VE968_00145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003039891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HZU50261.1"
                     /translation="DIIDQIKELIETRVRPAVAQDGGDIVYKGYREGHLYLSMHGACS
                     GCPSSTITLKRGIESLIRHYVPEVESVEAV"
     gene            257..889
                     /gene="tsaB"
                     /locus_tag="VE968_00150"
     CDS             257..889
                     /gene="tsaB"
                     /locus_tag="VE968_00150"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HZU50262.1"
                     /translation="MTTILLEMLLAFDTSTAACTAALFEADGACIGRVDENIGRGHAE
                     RLVPMIAELLDGRSADHILVGVGPGSFTGIRVAIAAAQGLSIGWDAMIAGMSSLGLLV
                     AGANGDEEEVAAAIVGGHGELFIQQFAAGTLEPVSGIRSARPAAAREITAPIIYGSGA
                     HELVAARGWGEARDELPSAANALRLPKDLRTLPAKPVYARAPDARVPEAA"
     gene            889..1368
                     /locus_tag="VE968_00155"
     CDS             889..1368
                     /locus_tag="VE968_00155"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HZU50263.1"
                     /translation="MATIERQLEIEPGTSDDLDGVMAVMDAAFGQHFGEAWTRSQLAG
                     ILPMGGVALVLARETGRETVGFSLIRTVADESELLLLAVLPTHHRRGVGRRLLEDFME
                     RARNDEVARVHLEVRDGNPAVLMYQSAGFSPVGRRRNYYHSPDGKRFDAITLACKLN"
     gene            1486..1911
                     /locus_tag="VE968_00160"
     CDS             1486..1911
                     /locus_tag="VE968_00160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007015511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucR family transcriptional regulator"
                     /protein_id="HZU50264.1"
                     /translation="MSDLENGEDTLLTLTADIVAAHVSNNSVAVNDLPNLIQNVHAAL
                     TGIAGNATAPEPKPEPKVSVRSSVKPDYIVCLEDGKKLKMLKRHLMTHYNMTPDQYRQ
                     KWGLATDYPMVAPNYAEQRRTLAKSIGLGTKRRTGRAAK"
     gene            1955..2377
                     /locus_tag="VE968_00165"
     CDS             1955..2377
                     /locus_tag="VE968_00165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HZU50265.1"
                     /translation="MTRTIDIEALCADKGLRITEQRKVIARVLGDSEDHPDVETLHER
                     AASIDPNISIATVYRTVRLFEEAGILERHEFGDGRSRYEAVSENHHDHLIDVETGKVI
                     EFSDDELELLQKRIAEKLGFRLVDHRMELYGVSLNRER"
     gene            2412..3137
                     /locus_tag="VE968_00170"
     CDS             2412..3137
                     /locus_tag="VE968_00170"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HZU50266.1"
                     /translation="MRVAALLGLFAFLAPLHVATKTLFGKSGWPKRFLAAAAWILGAR
                     VSLEGKAPKRRSLLVANHTSWLDVLVLGGATGCAFVSKDQLGHPLIHWLADQNGTVYV
                     KRTHRKAARDQALTLARALEGTQPVLVFPEGTTGPGTHLLAFHSTLLEAVNFTPEDVS
                     IHPVAVDYHENRAVIGWYLESGRANILRILRRRGPFRATVRLLPPLDRRMDRKQLTSE
                     ARASIAQSLGLTSLEHSPIGKAE"
     gene            3134..4441
                     /gene="miaB"
                     /locus_tag="VE968_00175"
     CDS             3134..4441
                     /gene="miaB"
                     /locus_tag="VE968_00175"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006833616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HZU50267.1"
                     /translation="MTPKTFKIKSFGCQMNVYDGERMSELLTGNGMSAASEGEEADLV
                     VLNTCHIREKAAEKAYSDVGRLNRADGPKPIIALAGCVAQAEGVEAKRRSKLIDLVVG
                     PQAYHRLPELVAEASRGLRPVDTDMPAISKFDALPARRKASPSAFLTVQEGCDKFCTY
                     CVVPYTRGAEISRPWDDIVNEAHQLVACGAREIVLLGQNVNAWNNQERGLADLIRALS
                     VIDGLERIRYTTSHPADMTDALIAAHADVEKLMPYLHLPVQSGSNRILKAMNRSHTAD
                     TYLGIIEKMRHSRPDIAISGDFIVGFPGETEEDFEETLRIVDAVRYASAYSFKYSPRP
                     GTPAASMEDQIPREIKDERLQRLQARISEHQLAFNRSKVGTKTKVLIERAGRLAGQMI
                     GRSPWLQSVHLQTPRGIGEVVDVTLVGAGPNSMTGAERQKAAA"
     gene            4441..5451
                     /locus_tag="VE968_00180"
     CDS             4441..5451
                     /locus_tag="VE968_00180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007685017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HZU50268.1"
                     /translation="MARRDLAAVADRARLELEFEQPYLLGPLFGDYDRHLITIENRLG
                     VHIAARGNRVQIEGEADAAARARDVLIGLYNRLDHGHDVDSEAVEAVLGMAAQPNLDG
                     IIQDEVTSAPRVMIRTRKKTIVPRSAVQTAYMEALAQDDMIFALGPAGTGKTYLAVAQ
                     AVSQLISGSVDRLILSRPAVEAGERLGFLPGDMKEKVDPYLRPLYDALYDMLPTEQVE
                     RRIASGEIEIAPLAFMRGRTLNDAFIILDEAQNTTPLQMKMFLTRFGMRSRMVICGDP
                     HQVDLPDPSKSGLADAVGRLERVKSIAVVRFTAADVVRHPLVGRIVDAYEGPNAIRDV
                     GA"
     gene            5448..5954
                     /gene="ybeY"
                     /locus_tag="VE968_00185"
     CDS             5448..5954
                     /gene="ybeY"
                     /locus_tag="VE968_00185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HZU50269.1"
                     /translation="MMLEIALEADEEWDSSSSWEQIVERAAQAAIAESAFPQLSSSER
                     LVELSVRLTSNEQVRLLNAQWRGKDRATNVLSFPMLDQEDLSSANVAGPELLLGDIVL
                     ARGVCEAEALEKGTTLEEHASHLVVHGTLHLLGYDHHVEDEAAEMESREIRALERIGI
                     ANPYEELA"
     gene            5954..>6574
                     /locus_tag="VE968_00190"
     CDS             5954..>6574
                     /locus_tag="VE968_00190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HZU50270.1"
                     /translation="MATRHDEGGSRLWRGMRHLIFGEESEPTLREEIEEAIDEAEDSR
                     PVAGDLSPAERQMLRNLLHFGEQTAGDICVTRGDIIAVPSSIGFDDLVRAFADAGHSR
                     LPVYGESLDQVVGMVHIKDVFIANVDAARDRSIGALMREPLFVPESMGVIELLARMRA
                     QRVHLAIVVDEFGGTEGLVTIEDVVEEIVGEIEDEHDEAEKGMLTMM"
BASE COUNT         1365 a         1951 c         1982 g         1276 t
ORIGIN      
        1 cgacatcatc gaccagatca aggagctgat cgagacccgc gtccgacccg cggtcgcgca
       61 ggacggcggc gacattgttt acaagggcta ccgggagggg catctttatc tttcgatgca
      121 cggcgcgtgt tctggctgcc cgtcttcgac gatcacgttg aagcgaggga tcgagagtct
      181 catccgtcac tatgtgccgg aagtcgaaag cgtggaggcc gtttaacttt cagggacttg
      241 cggcgttgag ccgcatgtga ccactatcct tctcgaaatg cttctcgcct ttgacacctc
      301 gactgctgcc tgcaccgctg ccctgttcga agcggacggc gcgtgtattg gccgcgtcga
      361 tgaaaatatt ggccgtgggc acgccgagcg tctcgttcca atgattgccg agctcctcga
      421 cgggcggagt gccgaccata tcctggttgg cgtggggccc ggaagtttta ccggtatccg
      481 tgtcgcgatt gctgcggcgc agggactttc gatcggctgg gatgcaatga tcgcgggaat
      541 gtcatcgctc ggactgcttg tcgccggagc gaacggcgat gaagaagaag ttgctgctgc
      601 gatcgtgggc ggccatggcg aattgttcat ccagcaattc gcggccggta cgctggaacc
      661 cgtcagcgga ataagaagcg cccgtccggc ggcggcaagg gagattacgg ctccaatcat
      721 ctatggctct ggcgctcacg agctcgttgc agcaaggggc tggggcgagg cgcgcgacga
      781 gcttccttcc gccgccaacg ccctgcgact ccctaaggat cttcgcacac ttcccgccaa
      841 gccggtctat gcccgtgctc ccgacgcgcg cgttcccgag gcggcgtgat ggcgaccatt
      901 gaacggcaac ttgagatcga acctggaaca tccgacgatc tcgacggcgt gatggcggtc
      961 atggatgccg cgttcggcca gcatttcggc gaagcgtgga cacgctcgca gctcgctgga
     1021 atcctgccga tgggtggtgt cgcgctggtc ctcgcgcggg agactgggcg agagacggtt
     1081 ggcttttcgc tcattcgaac tgtcgccgat gagtcggaac tactgctact tgcagtactt
     1141 ccgacacatc atcgacgtgg agttggacgc cgtttgcttg aggacttcat ggaacgagca
     1201 cgaaacgacg aagttgcccg agtgcatctt gaagttcgcg atggaaaccc agccgtgctg
     1261 atgtatcaat ctgccggttt ttcacccgtc gggagacgtc gcaactatta tcattcgccg
     1321 gatggaaagc gattcgatgc gattacgctc gcctgcaagc ttaattaagt tatcttaact
     1381 taatcaggtt tccaccgtgt tgttgcgccg gaagaatcgg aagcgtaata aagcctctag
     1441 tgcgatcttt gattgcactt actctgctcg aggggaactt agttcatgtc tgatctagaa
     1501 aatggcgaag acacgctatt gacgctaacg gctgacatcg tcgccgcgca cgtcagcaat
     1561 aatagcgtcg cggtcaatga cttgcctaac cttatccaga atgttcacgc ggcgctcacg
     1621 gggatcgctg gcaacgcaac tgctccggag ccgaagccgg agccgaaggt ttcggttcgt
     1681 tcgtccgtca agccggacta catcgtgtgc ctcgaagacg gcaagaaact aaagatgctg
     1741 aaacggcacc tcatgactca ctataacatg acgccggatc agtaccgtca gaaatggggg
     1801 ctcgcgacgg actatccgat ggtcgcgccc aattacgccg aacagcgacg cacccttgca
     1861 aagtcgattg gcctgggcac gaagcggcgc actgggcgcg cggccaaata agcgcgtgct
     1921 ggaccttggc gagccgcgca cctaatttga gcgcatgacg cgcacaatcg acatagaggc
     1981 gctgtgcgcc gacaaaggac ttcgcatcac cgagcagcgc aaagtaatcg cgcgagtact
     2041 cggtgacagc gaagatcacc ccgacgtcga gacgcttcac gagcgagcgg catcaattga
     2101 cccgaacatc tcgattgcaa cggtttaccg gaccgtgcgg ctgttcgagg aagccggaat
     2161 tcttgaacgt cacgagttcg gcgatggccg ctcacgctat gaggctgttt ccgagaacca
     2221 ccacgaccat ttgatcgatg tcgagacggg caaggtaatc gagttcagcg acgacgaact
     2281 cgagctgctg caaaagcgaa tagcggagaa actcggtttt cgtctcgtcg accaccgaat
     2341 ggagctatac ggcgtctcac tcaaccgcga acgatagtgc gccagcttcc cggctgaatg
     2401 gacgcgcggt tgtgcgcgtc gcagccctgc tgggtctatt cgcgtttctc gcgcccttgc
     2461 acgtcgcaac gaagactctc ttcggaaagt ccggatggcc caagcgcttc ctcgccgctg
     2521 ccgcatggat ccttggcgca agggtgagcc ttgagggcaa agcgcccaag cggcgttcgc
     2581 tcctcgttgc aaaccacacg agctggctcg acgttctggt gctcggcgga gcgacaggat
     2641 gcgcgttcgt ttcaaaggat caattggggc atccgctgat ccactggctg gcggaccaga
     2701 acggaacggt ttacgtgaag cgcactcacc ggaaagccgc gcgggatcag gcgctaacgc
     2761 tcgcccgagc gctcgaagga acccagcctg ttcttgtctt tcccgaagga accaccggtc
     2821 ccggcacaca tcttctcgct tttcactcga ccttgttgga agccgtgaat ttcacgcccg
     2881 aagatgtcag catccaccct gttgccgtcg attatcatga gaatcgagcc gtgatcggct
     2941 ggtacctcga aagcggccgc gcgaatatct tgcgcatcct tcgacgccga ggtccatttc
     3001 gcgcgactgt tcgcctcctc cctcccctcg atcgaagaat ggaccgcaag caacttacga
     3061 gcgaagcgcg cgcatcgatc gcccaaagcc ttggcttaac gtcgctcgag cactcgccta
     3121 taggtaaggc agaatgactc ctaagacttt caagatcaaa agtttcggct gccagatgaa
     3181 cgtctacgac ggagagcgca tgtccgaact tctcactggc aacgggatga gcgcggcctc
     3241 cgaaggcgag gaagcagacc tcgtcgtgct gaacacgtgc catatccgcg agaaagccgc
     3301 cgagaaggcc tattcggacg ttggaaggct taatcgagct gatggtccaa agccgatcat
     3361 tgcccttgcc ggctgtgtgg cccaggcgga gggcgttgaa gccaagcgac gttccaagct
     3421 catcgacctt gtcgttggtc cccaagccta tcaccggctc cctgaacttg ttgcggaagc
     3481 atcgcgcggg ctgcgacccg tcgacaccga tatgccggca atcagcaagt ttgacgcgct
     3541 cccggcgcgg cgcaaggcga gcccaagtgc attcctcacc gtgcaggaag ggtgcgacaa
     3601 gttctgcact tactgcgtcg tgccctatac ccgtggcgcg gagatctcgc ggccatggga
     3661 cgacattgtg aacgaggcgc atcaactcgt cgcgtgcggc gctcgggaaa tcgtcctcct
     3721 cggccagaac gtcaacgcgt ggaacaacca agagcggggt cttgcggatc tgatccgcgc
     3781 actgtcggtg atcgatgggc ttgaacgcat ccgctacacg accagccacc cggcagacat
     3841 gaccgatgcg ctcatcgccg cgcatgccga cgtcgagaaa ctgatgcctt acttgcacct
     3901 tccggtgcag tcggggagca atcgcattct gaaggcaatg aaccgcagtc acacggccga
     3961 cacgtatctc ggcataatcg agaagatgcg acactcccgc cccgatattg cgatctccgg
     4021 tgacttcatc gtcggcttcc cgggagaaac cgaagaggat ttcgaggaga cgctccgaat
     4081 tgtcgatgcg gtgcgttacg cctccgctta ttcattcaaa tacagcccac ggccaggcac
     4141 tccggccgca tcaatggagg accagattcc gcgcgagatc aaggacgaac gccttcaacg
     4201 actgcaggca cgaatcagcg aacaccagct cgccttcaat cgttcgaagg taggcacaaa
     4261 gaccaaggtg ctgatcgaac gcgccggcag actcgctggg cagatgatcg gccggtcgcc
     4321 ttggctccag tccgtgcacc ttcaaacgcc tcgcgggatc ggcgaagttg ttgatgttac
     4381 gctagtcggc gctgggccta acagcatgac cggcgccgag cgccagaagg cggcggcctg
     4441 atggcgcggc gtgatctcgc cgccgtcgcc gaccgagcgc gtctcgagct tgaattcgag
     4501 cagccttacc tgctcggacc gctctttggc gattatgacc gtcatttgat cacgatcgaa
     4561 aatcggcttg gcgtccatat cgccgcgcgc ggcaatcgcg tgcagatcga aggcgaagcg
     4621 gatgccgcgg cgcgcgcgcg tgacgtgctg atcggtctct acaatcgact tgatcatggc
     4681 catgacgtgg actccgaggc cgtcgaagcg gtgcttggaa tggcagctca gcccaatctc
     4741 gacggcatca tacaggacga ggtcacatcg gcgccgcggg tgatgatccg aacgcgcaag
     4801 aaaacgatcg tcccgcggtc ggccgtccag accgcctaca tggaagccct cgcgcaggac
     4861 gacatgattt tcgccttggg accggcgggc accggaaaga cgtatctcgc tgttgcgcag
     4921 gcggtatccc agctcatcag cggcagtgtt gaccgtctca tcctgtcacg gcccgcagtg
     4981 gaagccggcg agcgcctcgg cttcctccca ggggacatga aggaaaaggt cgatccgtac
     5041 ctgcgccctc tgtacgatgc gctttacgac atgctgccga ccgagcaggt cgagcgccgg
     5101 atcgcaagcg gtgaaatcga gattgcgcct ttggctttca tgcgtggacg cacgctcaat
     5161 gatgcattca tcattctcga cgaagcgcag aacacgacgc cgctgcagat gaaaatgttc
     5221 ctcacacgct ttggaatgcg cagccgaatg gtgatttgcg gtgacccgca ccaggttgac
     5281 ttgcccgatc cgagcaaatc cggacttgcc gatgcggttg gcaggcttga acgtgtgaag
     5341 agcattgcgg tagtccggtt tacggccgct gatgtcgtgc gtcatccgct cgtcggccgc
     5401 attgtcgacg cttacgaagg acccaatgcc atccgagacg tgggagcatg atgctcgaaa
     5461 tcgcgctcga agccgatgag gaatgggaca gtagcagctc ctgggagcag atcgtcgagc
     5521 gcgccgcgca agctgcgatc gccgagagcg cttttccaca gctaagcagc agcgagcgct
     5581 tggtcgagct atccgtgcgt ctcacgagca atgagcaggt gcggctgctc aatgcgcagt
     5641 ggcgcggcaa ggacagagcg accaacgtcc tgtcgtttcc aatgctcgac caggaggatc
     5701 tgtcatcggc aaatgttgcc ggacctgaat tattgcttgg tgacatagtc cttgcgcgtg
     5761 gagtctgcga ggctgaagcg ctcgagaaag gcaccacgct cgaggagcat gcgagtcacc
     5821 tagtcgtcca cggcacactt cacctcctcg gctatgatca ccacgtcgag gacgaggccg
     5881 ccgagatgga atcgcgcgaa attcgtgccc tggagcgcat cggcatcgcc aatccctacg
     5941 aggagctcgc ctgatggcga cgcggcatga cgagggcgga tcgcgccttt ggcgcggcat
     6001 gcgacacctc atcttcggtg aagagtccga gccgaccctt cgcgaggaga tcgaagaagc
     6061 tatcgacgaa gccgaggact cgcgtcccgt agccggcgac ctgtcgccgg ccgagcgcca
     6121 aatgctgcgc aacctgctgc acttcggcga gcagaccgcg ggcgatattt gcgtcacgcg
     6181 cggcgacatc attgccgtac cgtccagcat cggcttcgat gacctggtgc gcgccttcgc
     6241 cgatgcaggc cacagccgtc ttccggttta cggcgaaagc ctcgatcaag tcgttggaat
     6301 ggtccacatc aaggacgtgt tcattgcgaa cgtcgacgcc gcgcgagacc ggtcgatcgg
     6361 ggcgttgatg cgtgaaccgc tgtttgtccc ggaatccatg ggtgtcatcg agctgcttgc
     6421 tcggatgcga gcccaacggg tccatctcgc gatcgtcgtc gacgagtttg gcggcactga
     6481 aggcctcgtc accattgaag acgtcgttga ggaaatcgtc ggtgaaatcg aagatgaaca
     6541 tgacgaagcc gaaaaaggca tgctgacaat gatg
//
LOCUS       DASRBJ010000008         4934 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_355926,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000008 DASRBJ010000000
VERSION     DASRBJ010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4934
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355926"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            256..1500
                     /locus_tag="VE968_00195"
     CDS             256..1500
                     /locus_tag="VE968_00195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA modification/repair radical SAM
                     protein"
                     /protein_id="HZU50271.1"
                     /translation="MSRLDLKAKLAILADAAKYDASCASSGTTTRDSLGGKGVGSSEG
                     MGICHAYAPDGRCISLLKILLTNSCIFDCAYCINRKSSKVRRARFSIDEIVQLTIAFY
                     KRNYVEGLFLSSGIIRSSNYTMEQIVEVARTLREDHDFRGYIHLKTIPDADPELVHLA
                     GLHADRISINVELPTERALHELAPEKDLGRIEGAMGTMKSSIAAAEDGAKRFKCAPRF
                     APAGQSTQMIIGADRANDRDIVANASKLYERFALRRVYYSAFSPIPDASCILPLKRPP
                     LMREHRIYQADWLMRFYGFTLSDVQDTTDENGMLSLEIDPKLSWALKYRESFPVDVNR
                     ASREMLLRVPGLGSKAVERIVASRRWRKLALGDVAPLTSSIAKVRPFISATDWRPSLL
                     LDRSDLRSLVAPKQQQLELFAN"
     gene            1520..2947
                     /locus_tag="VE968_00200"
     CDS             1520..2947
                     /locus_tag="VE968_00200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008602930.1"
                     /note="This protein belongs to the uracil DNA glycosylase
                     superfamily, members of which act in excision repair of
                     DNA. However, it belongs more specifically to UdgX branch,
                     whose founding member was found to bind uracil in DNA
                     (where it does not belong), without cleaving it, appears
                     to promote DNA repair by a pathway involving RecA, rather
                     than base excision; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UdgX family uracil-DNA binding protein"
                     /protein_id="HZU50272.1"
                     /translation="MVDTYRVTLNEPDDFEGWREAARGLAEAGVPADAIVWQVAGGET
                     DLFGSDAERIPARGFAVPRRFVELARRVVCHSDEGRFALLYSMILRLKTARDSLGDEA
                     DPLVRRLLKLEKEVERDVHKMHAFVRFREMGERFVAFFEPEHHIVRLASGFFVRRFAN
                     MNWSILTPRLSIQWDTKRLFEGPGAFRAETPSGDPLEEAWRTYYSNIFNPARLKVRSM
                     LKEMPKKYWRNMPETSLVQSLIAGARSRELEMIDRSAAKEGLAKALEAEQRVEPGGNL
                     RASWEALLNDARKCTRCDLYRNATQTVFGEGPLNASILFVGEQPGDQEDVAGRPFIGP
                     AGQLFDAALEKAGIDRSKVYVTNAVKHFKFEQRGKKRIHSKPGSGEIDACRWWLQHER
                     ELIRPPVTVALGATAAHSLFGKAMPIGKNRGTALKLADGSECWITVHPSFLLRIPEED
                     RRREERALFVRDLKRIKSRASELSQ"
     gene            complement(3017..>4934)
                     /locus_tag="VE968_00205"
     CDS             complement(3017..>4934)
                     /locus_tag="VE968_00205"
                     /inference="COORDINATES: protein motif:HMM:TIGR01783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HZU50273.1"
                     /translation="DIRYIPQAITTISSAQVEDQQLRSMGDLLLFVPGASYGAGEGNR
                     DQVVLRGNSSTADFFVDGIRDDVQYFRDFYNVDRVEVLKGPDAMIFGRGGGGGIVNRV
                     LKRPSLSNESHVSSSIDNWGAKRITADVDKRLADSFGLRLDSMFEDSDGFRHYDNLRR
                     YGINPTAALLAGGQTRVDLGFEHFHDERTADRGVPADGNQPLHGYTRAFFGDPRVSYS
                     RATVDIATLTAKHEFTSSLDLRNHTEYGTYRKFYQNVFPNSFDPATSTVALAGYNNRN
                     NRTTLYTQTDLVWRTRSGGFNQTVLFGFDLGSERSRNRHLTASFVQGGTTPLSQPTIS
                     AEVRFAAGASDANNRVSLSYAGIYVQDQVRIGTWFEIIAGARFDALKTKLQDLRLSSG
                     QLFDRRDNLWSPRIGIVLKPRRRLSFYASYSRSYLPQSGDQFSSLTSVTAGLQPERFD
                     NHEVGAKLQLPGGILATIAAYQLDRTNTRATDPTNPALLVLTGAQRSHGVEVGLERSV
                     TARWLVSMGYALQNATIVSATTSAPAGRAVPLVPRQSFSMWNRYALSRRTGVGMGLIT
                     RSKSYATISNAVKLPGYVRVDAALSYKLASSVDVQVNVENLFGVHYFPTASADNNIIP
                     GALRTVKATLAFKY"
BASE COUNT         1000 a         1418 c         1491 g         1025 t
ORIGIN      
        1 gatcatgatt tcgcgccgaa cgaaatcggc ccacggcatc acttcgttat agctggcaat
       61 cacgtccggc gtcatcggtg tgacggcggc agttggcggc tcggccgcag caatcgcgac
      121 gaggggcagg agcgaaatgg caatcttgaa cgcgcatttg accatcattc gcccgtacgg
      181 cccggcggcc gtcgcggcaa gctacggctc aagggcggta tggacagctc gatggggaga
      241 acataacacg aactcgtgtc gcgtcttgat cttaaagcaa agctcgcaat tctggccgat
      301 gcggcgaaat acgacgcctc ttgcgcgtcg tcgggcacga caacgcgcga cagcctcggc
      361 ggcaagggtg ttggctcgag cgaaggcatg ggtatttgtc acgcctatgc acctgacggc
      421 cgatgcattt cgctgctcaa gatccttctt accaacagct gcatctttga ttgcgcctat
      481 tgcatcaacc gcaagagttc caaggtccgc cgcgctcgct tcagcatcga cgaaattgtt
      541 cagctaacca tcgcttttta caagcggaac tatgtcgagg gtttgttcct ttcgtcaggt
      601 atcatccgct catccaatta cacgatggag caaattgtcg aggttgcgcg cacactacgc
      661 gaggaccacg actttcgggg ctatatccat ttgaagacta tacccgatgc cgacccagaa
      721 ctggtgcacc ttgccgggct tcatgcggat cgcatttcga tcaacgtcga actgccgacg
      781 gagcgcgcat tgcatgagct tgcgccggaa aaggaccttg gtcgcattga aggtgcaatg
      841 ggaaccatga agtcgtccat cgctgccgcg gaagacggcg ccaaacgttt caagtgcgcc
      901 ccgcgatttg cgccggccgg gcagtcgacg cagatgatca tcggtgccga tcgggcgaat
      961 gaccgcgata ttgttgccaa tgcaagcaag ctctacgaac gcttcgcgct ccgccgggtc
     1021 tattattccg ccttttcccc aatcccggat gcaagctgca tactgccact gaaacgcccg
     1081 ccactgatgc gcgagcaccg gatctaccag gccgactggc tgatgcgatt ttacggcttc
     1141 acgctgagcg acgtgcaaga cacgacggac gaaaatggca tgctctcgct cgaaatcgat
     1201 ccaaagctct cgtgggctct taaataccgc gaaagctttc cggtcgacgt caaccgcgcc
     1261 tcgagggaaa tgctgctgcg cgtgccggga cttggcagca aggcggtcga gcggattgtc
     1321 gcatcgaggc gttggcgcaa gctcgccttg ggcgacgttg cgccactgac ttcctcgatc
     1381 gctaaagtgc gccccttcat tagcgcgacc gactggcgtc cctcattgct tctggaccgg
     1441 agcgatcttc gctcgctcgt tgccccaaag cagcaacagc tggagctgtt cgcgaactga
     1501 gatggttcgc gcgtggccaa tggttgatac gtaccgcgta acgctaaatg agcccgacga
     1561 cttcgagggc tggcgtgagg cagcgcgtgg acttgccgag gccggagttc cagccgacgc
     1621 gatcgtgtgg caggtagctg gcggcgaaac agatctgttt ggctccgacg ccgagcgaat
     1681 tcccgctcgt ggcttcgcgg tgccgcggcg ctttgtcgaa cttgcgagac gcgtagtctg
     1741 ccattctgac gaagggcgct ttgcactgct ctattcgatg attctgcgcc tgaagaccgc
     1801 gcgtgatagc ctcggcgacg aagcagaccc cctggttagg cgtctcctta agctcgagaa
     1861 ggaagtcgag cgtgacgttc acaagatgca cgcattcgtc cgcttccgag aaatgggcga
     1921 gcgttttgtc gcgtttttcg aacccgaaca tcatatcgtg cgacttgcct ccggcttttt
     1981 cgtgaggcga tttgccaaca tgaactggtc gatcctgaca ccgcggttgt cgattcagtg
     2041 ggacacaaag cgcttgttcg aaggacccgg cgctttccgc gccgagacac cttctggcga
     2101 cccactcgag gaagcatggc gcacctatta ttcgaatatc ttcaaccccg cgcggctgaa
     2161 ggtccgctcc atgctgaagg agatgcctaa gaagtactgg cgaaacatgc cggagacttc
     2221 gctcgttcag tcgttgatcg caggtgctcg cagccgggaa ctggaaatga ttgatcgctc
     2281 cgccgccaag gagggacttg ccaaggctct tgaagccgag caacgcgttg agccgggtgg
     2341 gaacctccgc gcttcatggg aggcgcttct caacgatgcc cgcaaatgca cgcgttgcga
     2401 tctttaccgg aacgcaacgc agacggtctt cggcgaagga ccactcaatg cctcgatcct
     2461 gtttgtcggc gagcagccgg gcgaccagga ggatgtcgcg ggaagaccgt tcattggtcc
     2521 ggcaggccag ctgttcgacg cagcgctcga aaaagcaggg attgaccggt cgaaggttta
     2581 tgtgacgaac gcggtgaagc acttcaagtt cgagcagcgt ggcaagaagc gcatccacag
     2641 taagccggga tcgggcgaga tcgacgcatg ccgttggtgg ctccaacacg agcgcgaact
     2701 gatccgaccg ccggtcacgg tcgcacttgg cgccacggca gcccatagcc tttttggcaa
     2761 ggcgatgccg attggaaaga accgcggcac ggcgctaaag ctcgccgacg gtagcgagtg
     2821 ctggattacc gttcatccga gtttcctact ccgcattccc gaagaagacc gcaggcgtga
     2881 agaacgcgcc ttgttcgttc gcgaccttaa acgcatcaag tctcgggcgt ccgagctttc
     2941 gcagtaagcg agggtttctc taccatttga atggtggtga tgcgtggctc ccttcagcgc
     3001 attttgcgat tgctgactaa tatttgaacg ccagagttgc ctttacggtt cggagtgcac
     3061 cggggatgat gttgttgtct gcgctcgctg ttggaaagta gtgtacccca aaaaggtttt
     3121 cgacgttgac ctggacatcg acactgcttg caagcttgta agacagtgcc gcgtccacgc
     3181 gaacgtagcc cggaagcttc acggcgttgc tgatcgtcgc gtatgacttc gagcgggtga
     3241 tcaatcccat tccaacgccc gtccgcctcg agagcgcgta gcggttccac atcgaaaagc
     3301 tctgccgcgg aacgagcggg acagcacggc cagccggagc ggaggtggtc gcgctgacga
     3361 tcgtcgcatt ttgcagcgcg tatcccatcg agacgagcca gcgagcggtg acgctgcgct
     3421 ccagccccac ttccacgccg tgactgcgct gcgcacccgt gagaactaaa agggccggat
     3481 tcgtggggtc cgttgcgcgg gtattcgttc ggtcgagctg ataggccgct attgtcgcga
     3541 gtatcccgcc agggagttga agcttggcgc cgacttcgtg gttgtcgaac cgttccggct
     3601 gcagcccggc ggtaacgctt gtgaggctgc tgaactgatc acccgattgg gggagatagg
     3661 aacggctgta gctcgcataa aaggataggc ggcggcgtgg cttcaaaacg atgccaatcc
     3721 gcggtgacca caggttgtcg cggcggtcga acagttgccc agacgaaagt cgcaagtcct
     3781 ggagtttggt cttcaaggcg tcgaaacgcg ctcctgcgat aatctcgaac cacgttccga
     3841 tcctgacctg atcctggacg tagatgcccg cgtaggagag cgagacccgg ttgttggcat
     3901 cgctcgcgcc ggcagcgaac cttacctcgg cgctgatggt tggttgggat aatggcgtcg
     3961 ttccgccctg aacgaagctc gcagttagat gcctgttgcg ggaacgctct gatccgaggt
     4021 cgaagccgaa aagcacggtc tggttgaacc cgccactgcg cgtgcgccaa acgagatcag
     4081 tctgcgtgta gagggtcgtt cgattgttgc ggttgttgta ccccgcaagc gcaacggtgc
     4141 tcgtcgccgg gtcgaagctg ttggggaaga cgttctggta gaactttcga taggttccgt
     4201 attccgtgtg gttgcgaagg tcgagagagc tggtgaactc atgtttggct gtgagcgtgg
     4261 cgatatcgac ggttgctctt gagtagctga cccgtggatc accgaagaag gcgcgggtgt
     4321 agccgtgcag cggctgatta ccatcagctg gaacgccccg gtccgcggtc cgctcgtcgt
     4381 ggaaatgttc aaagcctaga tcgacgcgtg tctgcccacc ggcgagcagt gccgccgtcg
     4441 gattgattcc gtagcggcgc aaattgtcat agtgccggaa accgtcacta tcctcgaaca
     4501 tcgaatccag gcgcaggcca aagctatccg ccaaccgctt atcgacgtca gcggtgatcc
     4561 gcttggcgcc ccaattgtcg attgaagagc taacgtggct ctcattggaa agacttggcc
     4621 gctttagcac gcgattgacg attccgccgc cgccgccgcg gccgaagatc attgcgtcgg
     4681 gccctttcaa gacttcgacc cgatcgacgt tgtagaaatc ccggaaatat tgaacgtcgt
     4741 cccgaatgcc atcgacgaaa aaatcggcgg tgctcgaatt gccgcgcagc accacctgat
     4801 cacgattgcc ttccccagcc ccataagagg ctcccggaac gaaaagcagc aggtctccca
     4861 tcgagcgcag ttgctggtct tcgacttgcg cgctcgaaat ggtggtgatc gcctgcggaa
     4921 tgtacctgat gtcc
//
LOCUS       DASRBJ010000009         3829 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_661026,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000009 DASRBJ010000000
VERSION     DASRBJ010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3829
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_661026"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..222
                     /locus_tag="VE968_00210"
     CDS             <1..222
                     /locus_tag="VE968_00210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008832929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HZU50274.1"
                     /translation="KDHKSATYGDAPMPYTLRLTNDGVSIHGSNVRWGFATHGCVGVP
                     KDFAAKLFDVVSKGDEVLIVSGKNDARTA"
     gene            complement(335..1222)
                     /locus_tag="VE968_00215"
     CDS             complement(335..1222)
                     /locus_tag="VE968_00215"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HZU50275.1"
                     /translation="MNIRAEILGGAEERKTRLLVRKKPKQVEATGLTDIVIPREEVRR
                     TDMRREDRPPADGKIYRARFRDCDHEVELLNLSGGGAMIRGRLSPNIDEPLELFLSEG
                     ESIECLVRWVRDMRIGLELAHETKVQCTEEKRVELLREVVRERFPAEELEMVKLESKE
                     TDHRRADRHPLIWFGELHHNSHRWTVRLRNISETGALIEFTGALRLGSEVELDLGASG
                     KLAATVSWAVGDHAGLEFAEPFDLAQLAKSKPRVTSTTWLRPAYLEGETAEDSAWDDA
                     WNRLSVDELRFELEGYLKR"
     gene            1458..1793
                     /locus_tag="VE968_00220"
     CDS             1458..1793
                     /locus_tag="VE968_00220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50276.1"
                     /translation="MPEFGKRIDQPGGRRRARRKRVVLAGASVAEESLQHVIIEDLCS
                     TGAKLRGRNLPVSGKNMRIAVGSMTLNAAVAWNGSEQCGVTFDTPLDEMAVRQLLHEG
                     RWGHVLSII"
     gene            complement(1834..3432)
                     /locus_tag="VE968_00225"
     CDS             complement(1834..3432)
                     /locus_tag="VE968_00225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046556 - alpha-L-arabinofuranosidase
                     activity [Evidence IEA];
                     GO_process: GO:0046373 - L-arabinose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-arabinofuranosidase C-terminal
                     domain-containing protein"
                     /protein_id="HZU50277.1"
                     /translation="MAIGKSLKHSACVGIAALLAFEPLIAAPAPSEHRIAIDATKAGP
                     TISRDIFGQFAEHLGSGIYGGIWVGRGSPIANVRGIRSDVVQALRAIEVPNVRWPGGC
                     FADNYHWRNGIGPQDKRPQTLNPDWGGVIEPNSFGTDEYFDFLGQIGADAFISENIGS
                     GTAQESADWFEYMTSGKPTTLANLRAANGHAAPYRIKYLGLGNESWGCGGAMSPDHYV
                     EEMKRFSHYTRNYNPAQQSGSAAMKRIAVGWDSGNSDYTEAVMKAWKDKVWSWDIEGV
                     SLHGYTIPNSWEQKGPSFGFGESEYAKAIRATLKMKDWIARETAIMDRYDPDRKVGLY
                     IDEWGIWTDPNPGTNPGFLQQQNTLRDAVIAGLNLDIFMRNAERVRGSNIAQMVNVLQ
                     AMILTDGPRMVRTPTYYVYRMYVPFHDATLVPVAFDPGSYIFGTISVPQVDAVAARDK
                     AGNLWLATINVDPDKPAHFVASISGISARDAAGELLTSSRVDAHNSFESPNTVIPRTF
                     AGHVARGTVEFDLPPAAIAVVQVR"
     gene            3559..>3829
                     /locus_tag="VE968_00230"
     CDS             3559..>3829
                     /locus_tag="VE968_00230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 protein"
                     /protein_id="HZU50278.1"
                     /translation="MLFAATPSPAQISRDPAARRRAEKLATTLVQKMSLDEKLGQLVN
                     VAPAIPRLSIPAYNWWTESLHGAIGAVPTTNFPEPIGLAASFDAPL"
BASE COUNT          754 a         1159 c         1130 g          786 t
ORIGIN      
        1 aaagaccata agtccgcgac ctacggcgac gcgccaatgc cctacacctt gcgtctcacc
       61 aacgatggcg tttcgatcca cggcagcaat gttcggtggg gctttgcaac ccacggctgc
      121 gtcggcgtgc cgaaggattt cgccgcaaag ctgtttgatg tcgtttccaa aggtgacgag
      181 gtgctaatcg tctcgggcaa gaacgacgcg cgcaccgctt aaagcggcgg aattaggctg
      241 aggcgacact cgccggcatc gacccgtcgc ccgtgaaagc gtgtctcgcg agactcatat
      301 cagtagaaaa cccgtgcgag cgagaacgcg cggcttagcg cttcagatat ccttcgagtt
      361 cgaagcgtag ctcatcgacc gacagacggt tccaggcgtc gtcccacgca gaatcctcgg
      421 cggtctcgcc ctcgaggtaa gccgggcgga gccaggtcgt tgaagtaacg cgcggcttcg
      481 acttggcgag ctgtgcaagg tcgaacggct cggcaaattc gaggcccgca tgatcgccaa
      541 cagcccagct gacggtcgcc gcgagctttc cggaggcgcc gagatcaagc tcgacctcgg
      601 atccaaggcg gagtgcgccg gtgaactcga tgagtgcgcc ggtctcggaa atgttgcgaa
      661 gccgaacggt ccatcggtgg gaattgtgat gcaactcccc gaaccagatg agcgggtgac
      721 ggtcggcgcg gcggtgatcg gtctctttcg attccagttt gaccatttcg agctcttcgg
      781 ccgggaagcg ctcgcgaacg acctcgcgga gaagttcgac tctcttctct tcggtacact
      841 ggaccttggt ttcgtgcgca agttcaaggc cgatccgcat gtctctcacc catcgtacca
      901 gacattcgat ggactcgcct tcggacagga agagctcaag aggttcatcg atgttgggtg
      961 aaaggcgtcc ccggatcatt gcgccgccac ccgagaggtt cagaagttcg acctcatggt
     1021 cgcaatcgcg gaaacgcgcg cggtagatct tgccgtcggc gggggggcgg tcttcacgcc
     1081 gcatatcggt tcggcgaact tcctcgcgtg gaatgacaat gtccgtaagt ccggtcgctt
     1141 cgacctgctt gggcttcttg cggacgagaa gcctcgtctt tcgctcttct gccccaccga
     1201 gaatctcagc tcgaatattc atcacgccaa tcgatgcaca gttcgacgaa gcgtcctcac
     1261 tagcagtcgt cccttactcg caggtaaata cagccgttgg aaaacggcac ggaaaacggg
     1321 tgatgggagc caaatcagcc accttcgaat aaagcgcgtc taatctatgt tagtcaaaag
     1381 ctccgccccg cgttgacctt atcgaaagta aatcaactta gctcgaacgc gttgaacggg
     1441 ttcgcggaga ccttctaatg ccggaatttg gcaagcgtat tgatcagccg ggcggccgac
     1501 gccgagcgcg ccgcaaaagg gtggttctcg ccggcgcatc ggttgccgag gagagcttgc
     1561 agcatgtcat catcgaggac ttgtgctcga ccggcgcgaa gctccgcggt cgaaacctcc
     1621 ccgtttcagg aaaaaacatg cggatcgcgg tcggttcgat gacgctcaat gctgcggtcg
     1681 cgtggaatgg ctccgagcaa tgcggggtca ccttcgacac gccgctcgac gagatggccg
     1741 tccgccagct tctccacgaa ggccgctggg gacatgtgct cagcatcata tagccaagac
     1801 gcgcgctagc tgcccacgcg gccgatgaag cggctatcga acttgaacaa ccgcgattgc
     1861 cgccggtggc aagtcgaatt caaccgtgcc tcttgcgaca tgacccgcaa aggtgcgcgg
     1921 gatgaccgtg ttcgggcttt caaaactgtt gtgggcgtca actcttgaac tggtcaggag
     1981 ctcgcctgcc gcgtcgcgcg cgctaatccc actaatgctt gccacaaaat gcgccggctt
     2041 gtccggatcg acgttgatcg tcgcaagcca caagttaccc gctttgtcgc gagcggcgac
     2101 ggcgtcgacc tgcggcacgc tgatggtccc aaagatatag gatccaggat caaaggcgac
     2161 cggcacgagc gttgcgtcgt ggaaagggac gtacattcgg tagacgtaat aagtgggtgt
     2221 gcggaccatc cgcggcccgt cagtcagaat catcgcctgg agcacgttta ccatctgggc
     2281 gatgttcgag ccccgcacgc gctcagcatt gcgcatgaaa atatcgaggt tgagcccagc
     2341 aatcaccgca tcgcgaagcg tattttgctg ctggaggaag cccgggttgg tcccgggatt
     2401 gggatcggtc cagatccccc attcgtcgat gtaaaggccg actttccgat cgggatcgta
     2461 tcgatccatg atcgcggtct cgcgcgcgat ccagtccttc atcttgagcg tggcgcggat
     2521 cgccttcgcg tattcgcttt cgccaaagcc gaagctcggc cccttttgtt cccagctgtt
     2581 gggaatggtg tagccgtgca gcgaaacgcc ttcgatgtcc cagctccaga ccttgtcctt
     2641 ccaggccttc atcacagctt cggtataatc gctgttgccg ctgtcccacc cgaccgcgat
     2701 gcgcttcatt gcggcgctgc ccgactgctg cgccgggttg taattgcgcg tgtagtgcga
     2761 gaagcgcttc atctcctcaa cgtaatggtc gggggacatg gcgccgccgc atccccagct
     2821 ctcgtttcca aggcccagat acttgatcct gtagggagcg gcgtggccgt tcgcggcgcg
     2881 caggtttgca agcgtcgtcg gcttgcccga cgtcatatat tcaaaccaat ccgcagactc
     2941 ttgggcggtg cctgaaccga tgttctcgga aatgaacgcg tccgcgccaa tctggccaag
     3001 aaaatcgaaa tattcgtcgg ttccaaaact attgggttcg atgacgccgc cccagtcggg
     3061 gttaagcgtt tgcgggcgct tgtcttgggg cccgatcccg tttcgccaat ggtaattgtc
     3121 ggcaaagcaa ccgccgggcc agcggacatt gggaacttcg attgcgcgaa gcgcctggac
     3181 gacgtcgcta cggatgccgc gaacgttcgc aattggtgat cctcgaccaa cccagatgcc
     3241 gccgtaaatg ccgcttccca aatgctcggc gaactggcca aagatatcgc ggctgatggt
     3301 tgggccggct ttcgtcgcat cgattgcgat ccggtgctcg gacggtgcgg gcgcagcgat
     3361 caacggttcg aacgcaagca gtgccgctat tccaacgcag gcgctgtgct tcaaactctt
     3421 gccaatcgcc atgacttcaa ctcccctcgt tgcgctccgc ctcggctcta ctctacgtta
     3481 gcgctaacaa attgggaggg gcgattcttg gcgcggcgga tttttcagca gcggttcggt
     3541 gtcgcgctgc tggcgagcat gctgttcgct gcgacgcctt cgcccgcgca gatctcgcga
     3601 gaccccgccg ctcggagacg agccgagaag ctcgcaacaa ccctcgttca gaaaatgagt
     3661 ctcgacgaga agctcgggca gctcgtcaat gtcgctccag caatcccgcg actgagcatt
     3721 cccgcttata attggtggac cgaatccctc cacggcgcga tcggtgccgt accgaccacc
     3781 aactttcccg aaccgatcgg ccttgccgcg agcttcgatg ccccgcttg
//
LOCUS       DASRBJ010000010         2027 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_204975,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000010 DASRBJ010000000
VERSION     DASRBJ010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204975"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..710)
                     /locus_tag="VE968_00235"
     CDS             complement(<1..710)
                     /locus_tag="VE968_00235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HZU50279.1"
                     /translation="MSAPLPLPALHATHAGIWLAAGDGEVREASRGEAIARAAETPHI
                     ILNAPLVGQRLGYPELSGLDLLELFAFIHPARFAVPTVPGLSRAIGLRPTTNEPGAAA
                     QLQRIAGSLIAILSDANWREREGAWTANATLQRLGWGWAALIGARLERPQGGERMLFS
                     RLKQWEESGDRPPPQTLSIDPSEARKELDRLTMRREVRKGQQAMTEAVAAIFGPKLAK
                     GSPHLLVAEAGTGIGKTLA"
     gene            782..>2027
                     /locus_tag="VE968_00240"
     CDS             782..>2027
                     /locus_tag="VE968_00240"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009822781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HZU50280.1"
                     /translation="MRSKAWPYEEARKLLKRWPEGKPGGAPIVFETGYGPSGLPHIGT
                     FNEVARTSFVRHAYEELSGNPTRLIAFSDDMDGLRKVPENVPNQELLERNLGKPLTRI
                     PDPFGEYESFAHHNNAMLRRFLDRFGFRYEFLSATDYYSSGRFDEVIRKVLRGWDAIM
                     SVMLPTLREDRRKTYSPVLPLSPSSGRVLQVAVDVIDADAGLIAFDDEDGSRVQQSAL
                     GGAAKLQWKVDWAARWVALGVDYEMAGKDLIDSVVQSGKIARVLGGRPPEGFNYEMFL
                     DEKGEKISKSKGNGLSLEEWLRYGSEPSLSFYIYREPKRAKSLHLGVIPRAVDEYWQF
                     RSNYNEQPIDQKLGNPVHHIHAGEVPQHSLPLTYGLLLNLASLPGVADEDTVWRFVQR
                     YAPGISRDTDPELDELIALAVNY"
BASE COUNT          405 a          598 c          611 g          413 t
ORIGIN      
        1 gcaagggttt tgccgatgcc cgttcccgct tcggcgacaa ggaggtgcgg cgatcctttc
       61 gccagctttg gaccgaagat tgcggcgact gcttctgtca tcgcctgctg gcccttgcgg
      121 acttccctgc gcatcgtcag ccggtcgagc tcttttcgcg cctccgacgg gtcgattgat
      181 agtgtttgcg gcggcggtcg atcgccactt tcttcccact gcttgaggcg cgaaaagagc
      241 attcgctcgc caccttgcgg tcgctcgagg cgagcaccga tcaatgccgc ccacccccag
      301 cccagtcgct gcagcgttgc gttcgccgtc cacgcgcctt cgcgttcccg ccagttcgcg
      361 tcagaaagaa tggcgatgag tgatccggca atccgctgaa gctgcgcagc ggcaccgggt
      421 tcgtttgtcg tcggtctaag tccgatcgct cgcgacaagc ccgggaccgt cggaacagca
      481 aaacgcgctg ggtggatgaa cgcgaaaagc tcaagaaggt cgagtccgct aagctcggga
      541 tagcctagtc tctggccgac aagcggcgca ttaaggatga tgtgcggagt ctcggcagct
      601 cgagcgatcg cttcgcctcg gctcgcttca cggacctcgc cgtctcctgc tgcgagccag
      661 atgccagcat gggttgcgtg aagcgcggga agaggcaaag gagcgctcat cgccaagacc
      721 ctgccggttt gagaacagaa gagcaacgaa tttggccgct gacgacatcc gttctgccgc
      781 aatgcgctcg aaagcatggc catatgaaga ggcgcgcaag ctgctgaagc gctggccgga
      841 aggaaagccc ggcggcgcgc caatcgtgtt cgaaaccggc tatggaccat cgggcctgcc
      901 gcatatcggt acgttcaacg aagtcgcacg cacgagcttt gtccgtcatg cctatgaaga
      961 gcttagcggc aatccaactc gcctcatcgc gttcagtgac gacatggacg gactgcgcaa
     1021 ggtaccggaa aacgtcccca accaggagct tctcgaaagg aatcttggta agccccttac
     1081 gcggatcccg gatccgttcg gcgaatatga aagcttcgcg caccacaaca atgccatgct
     1141 gcggcgcttc ctcgatcgtt ttggcttccg ttacgagttc ctttcggcga ctgactatta
     1201 ttcgagcggc cgcttcgacg aagttattcg aaaggttctg cgcggctggg atgcgatcat
     1261 gagcgtgatg ctcccgacac tccgcgaaga tcggcgaaag acctattcac cagtacttcc
     1321 cttgtcgcca tcgagcgggc gcgttctgca ggttgcagtt gacgtcattg atgccgatgc
     1381 tggtctcata gcctttgatg acgaggatgg atcacgcgtt cagcaatcgg cgctgggcgg
     1441 tgccgccaag ctccagtgga aggtcgattg ggcggcgcgg tgggtggcgc tcggtgtcga
     1501 ttatgagatg gcgggaaagg acctcatcga cagtgtcgtc cagtcgggaa agatcgcacg
     1561 cgttctcggc ggtcgtccgc ccgagggctt caactacgag atgttcctcg atgaaaaagg
     1621 cgagaagatt tcgaagtcga agggaaacgg ccttagcctc gaggaatggc tgaggtacgg
     1681 aagcgagccg agcctaagct tctacatcta tcgcgaacca aaacgcgcca agagcttgca
     1741 tctcggcgtg atcccccgtg ccgtcgatga gtactggcag ttccgaagca actataatga
     1801 gcagccgatc gaccagaaac tcggcaatcc ggtgcaccac atccacgcgg gtgaggttcc
     1861 ccagcattcg ctgccgctca cctacggatt gcttctcaat ctcgcgagcc tgcctggcgt
     1921 tgccgacgag gacacagttt ggcgttttgt gcaacgctat gcgccgggga tctcgcgcga
     1981 cactgatcct gagctcgatg aattgattgc tcttgccgtc aattacg
//
LOCUS       DASRBJ010000011         4626 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_712214,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000011 DASRBJ010000000
VERSION     DASRBJ010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4626
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_712214"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            62..1174
                     /gene="ribB"
                     /locus_tag="VE968_00245"
     CDS             62..1174
                     /gene="ribB"
                     /locus_tag="VE968_00245"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HZU50281.1"
                     /translation="MPHHDYLSPIEDVIDDARNGRMFILVDDESRENEGDLVIPAQMA
                     TPEAVNFMARHGRGLICLALTKERADQLGLEPMTRTNRSRNETAFTVSIEAKDGITTG
                     ISAADRARTIAVAIDATHGREAIVSPGHVFPLVAKSGGVLVRAGHTEAAVDVSRLAGL
                     NPSGVICEIMREDGAMARLDDLVEFARVHGLKIGTIRDLIAYRLKKDHLVERVATAHF
                     AASSGAPWQAQVFRDKSNGEEQLALVHGSIDPSRPVLVRMHSIDLFADLIGESCVRSG
                     LLHGAMRMIEKEGSGVVVALHAAAPGSLSRAIDVRAGKPVEGGDAVRGYGTGAQILAA
                     LGVHDMILLSNTHHSPVGLSGYGLAIVDERPIETGI"
     gene            1174..1596
                     /gene="ribH"
                     /locus_tag="VE968_00250"
     CDS             1174..1596
                     /gene="ribH"
                     /locus_tag="VE968_00250"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HZU50282.1"
                     /translation="MAIVLLVEARFYPHLNDMLLTGARTAIEAAGHKHETLTVPGALE
                     VPGAIALAARSGRYCAFVGLGVVIRGETYHFEIVSNESARGLMELTLRGYAIGNGILT
                     VEDEQQAIVRCDPQQLDKGGGAARAALALFDLRTKYAP"
     gene            1816..2466
                     /locus_tag="VE968_00255"
     CDS             1816..2466
                     /locus_tag="VE968_00255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006834626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COQ9 family protein"
                     /protein_id="HZU50283.1"
                     /translation="MDSLTPLEQLRRELALAVGENAVFDGWTRSAVDSAAQQLGLDPV
                     QARLAMPKSAAALIDLYIVAVDRVLEAYFTPDRLANLKIREKIRSIIWQRLEIMAPAR
                     EAVRRALAILALPQNVPLALRISWRTADHMWRLAGDTSTDFSHYTKRMTLGAVYGSTL
                     LVWLDDQGDNWGETGEFLDRRIADVMRFEKIKADWRGSSEHLSLSRFVGRLRYPPR"
     gene            2533..2802
                     /locus_tag="VE968_00260"
     CDS             2533..2802
                     /locus_tag="VE968_00260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013832518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046914 - transition metal ion binding
                     [Evidence IEA];
                     GO_process: GO:0006811 - monoatomic ion transport
                     [Evidence IEA];
                     GO_process: GO:0055072 - obsolete iron ion homeostasis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FeoA family protein"
                     /protein_id="HZU50284.1"
                     /translation="MNAPFHPDVIGLDQLALGTKARVLGVDWDMLGEAEACRLRHFGF
                     ADGVIVEPLHLGPFGRDPVAVRVGRMTVAIRRKHARAISVSPLAK"
     gene            2799..>4626
                     /locus_tag="VE968_00265"
     CDS             2799..>4626
                     /locus_tag="VE968_00265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0015093 - ferrous iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter B"
                     /protein_id="HZU50285.1"
                     /translation="MNPLPLVAVAGNPNAGKSALFNALTGARQKVGNYPGVTVERHSG
                     RMVLADGRPVEIVDLPGSYSLDPASPDEAVTRDVLCGRQTGERQPDAVVIVLDASNLD
                     NHLRFALQVIELGLPAMVALNMVDLAKRDGLELDAKALERELGVPVIETVAVRRRGIA
                     DLQQAIDDMLSAPVCGVHKHVRSDLIHLQRRAREIASASVLSETPVRRWTHRLDTFLL
                     HPIFGPLILALIMFVMFQAVFAWSEQPKSWIEEAVGWLSNIVSGSLPPGLLRSMIVDG
                     AIAGVGAVVTFLPQILILFLFILLLEGTGYMVRAAFLMDKLMHSVGLSGRAFIPLLSS
                     FACAVPGIMATRTIDDPKDRLTTILVAPLMTCSARLPVYTLIIAAFIPNRRLAWGIGL
                     QGTVMFGLYVIGVVAALAAAFVVRRGVLKGTGGGFMMELPKYQLPRVKDVAIGLFTRA
                     AIFLKRAGTIILGTTMILWALASIPVASPGQKQSQVSIAGHVANVIEIIVRPIGFNHD
                     ISMALLPAMAAREVAVSSIATVYSIDAPDEREGATKLDDNLQHRWPLATALAFLAWFV
                     FAPQCISTIAVTRRETNGWKWPLFMVGYLFTLAYVAAGATYWI"
BASE COUNT          883 a         1355 c         1401 g          987 t
ORIGIN      
        1 tgttccgcca gcttgttaat ggtataaagt cagtcccaac cgatctaccc ggcaggaacc
       61 catgccccat cacgactacc tttccccgat cgaagacgtc atcgacgacg cccgcaatgg
      121 gcgcatgttc atcctcgtgg atgatgagag ccgtgaaaat gaaggtgacc tcgtgatccc
      181 ggctcagatg gcgacgcccg aggctgtgaa tttcatggca cggcacggcc gtggtctcat
      241 ctgcctcgca ttgacgaaag agcgtgccga ccagctcggt cttgagccga tgactcgaac
      301 aaacagaagc cgcaacgaga cggcttttac cgtgtcgatt gaggcgaagg atgggattac
      361 gacgggcatt agtgctgcag acagggctcg cacgatcgcg gttgccatag acgcgacgca
      421 tggacgtgaa gcgatcgtct cgcccggcca tgtctttccg cttgtcgcca agtctggtgg
      481 cgtccttgta cgcgccggtc acacggaggc cgcagtggac gtgtctcgcc tcgccgggct
      541 caatccaagc ggcgtcatct gcgagatcat gcgcgaagat ggtgcgatgg cgcggctcga
      601 cgacctcgtg gaattcgcgc gcgtgcatgg attgaagatc gggaccatcc gcgatctcat
      661 tgcttaccgc ttgaagaagg atcatctcgt cgagcgggtc gcgaccgctc attttgcagc
      721 aagcagcggt gcaccctggc aggcgcaggt gtttcgcgac aaatcgaatg gcgaggaaca
      781 gctggccttg gtccacgggt caatcgatcc gagccgccca gtcctggttc gaatgcatag
      841 cattgacctt tttgcggatc tcatcggcga atcctgcgtg cgttcaggtc tgctccatgg
      901 tgcaatgcga atgatcgaaa aagagggttc gggtgtggtc gttgcgctcc atgcggcagc
      961 accgggttcg ctgtcacgcg cgatcgatgt tcgcgctggc aagcccgtcg agggaggcga
     1021 cgcagtgcgc ggttacggca ctggagcgca gatcctcgcg gctcttggtg tccacgatat
     1081 gattctcctg tcgaacaccc accattcacc tgtcggtctg tcgggatacg gactggcaat
     1141 cgtcgacgaa cgacccatcg agacgggaat ctgatggcaa ttgtcttgct tgtcgaagcg
     1201 cgtttctacc cgcacctcaa cgacatgctg ctcaccggcg cgcgcaccgc aatcgaggct
     1261 gctggtcata agcatgagac gctcaccgtt cccggtgcgc tcgaggtacc cggagcgatt
     1321 gcacttgccg ctcgaagcgg ccgctactgt gcttttgtgg gactgggagt tgttatccgc
     1381 ggtgaaactt atcacttcga aatcgtgtcc aacgagagcg cgcgcggact gatggagctg
     1441 acgcttcgag gctatgcaat cgggaatggg atactgacgg ttgaagacga gcaacaggca
     1501 atcgttcgct gcgatccgca acagctagac aagggcggcg gcgcggcaag agccgcactc
     1561 gcgctctttg accttagaac caaatatgca ccgtgagcgg atctacggtg gcgtggacgt
     1621 tgccgcccgt gtcgaggtcc gttcatagcg acagacacag cccacaatcg cggcagcaat
     1681 gggactgttt gtctatcgcg aggcacggtc gtggtcgatg cggtgggtgc aataagggtc
     1741 gctggagccc tcgtcgttgc acggctccct gaacaggggt tgcgatcgct cgccgagcag
     1801 cccagttgag cgtccatgga ctcgctcacc ccgcttgaac agctgcgtcg cgagctcgcg
     1861 ctcgcggtcg gtgaaaatgc cgtcttcgat ggctggacga gatcagccgt cgacagtgcc
     1921 gcacagcaac tcggactcga tccagtgcag gcgaggcttg caatgccaaa gtctgcggca
     1981 gcgctcatcg atctctacat cgttgcggtg gaccgcgtgc tcgaggcgta ttttacgccg
     2041 gaccggctgg ccaatctcaa gattcgcgag aagatccggt cgatcatctg gcaacgcctc
     2101 gagatcatgg caccggcacg cgaggcggtt cgcagggcgc tcgcaatcct ggcgctccct
     2161 caaaacgttc ctttggcgct tcgaatatcc tggcgaacgg ccgaccatat gtggcggtta
     2221 gccggcgaca ccagtaccga cttcagccac tataccaagc ggatgacgct tggcgcggta
     2281 tatggatcga ccttgctcgt gtggctcgat gatcaagggg acaattgggg agagacgggc
     2341 gaattccttg accggcggat cgcggacgtc atgcgctttg aaaagatcaa ggctgactgg
     2401 cggggctcat cggagcattt gagtctttcg cgattcgtcg gccgcctacg ctacccgccg
     2461 cggtaacgct tcgatacgct aacgaaattg gctatggaac ttacgagtcg taaatgataa
     2521 tcactcgcaa taatgaatgc accctttcat cctgacgtga ttggccttga tcaactcgca
     2581 ctcggtacaa aggcgcgagt gctcggtgtc gattgggaca tgctcggcga agctgaggca
     2641 tgtcggctca ggcattttgg ctttgccgac ggcgtcatcg tcgagccgtt gcaccttgga
     2701 ccgttcgggc gtgatccggt cgcggtccga gttgggcgga tgaccgtagc catccgccgc
     2761 aagcatgccc gggcgatcag tgtttcccca ctagccaagt gaatcctctt ccgcttgtcg
     2821 ccgtcgccgg caaccccaat gcgggcaaga gcgcgttgtt taatgcgctc accggagcac
     2881 gacagaaggt gggcaactat cctggcgtga cggtcgagcg gcattcggga cgaatggtgc
     2941 ttgccgacgg gcgcccggtg gagatcgtgg accttcccgg ctcctatagc ctcgatccag
     3001 caagccccga cgaagcggtc acccgcgatg ttctatgtgg caggcaaacg ggcgagcggc
     3061 agcccgacgc tgtcgtaatt gttctggacg cgtccaacct cgacaatcat cttcgcttcg
     3121 ctctccaggt aatcgagctc ggtctccccg caatggtcgc cttgaacatg gtcgatcttg
     3181 cgaagcgcga cgggttggag cttgatgcga aggcacttga gcgcgaactt ggcgtcccgg
     3241 tgatcgaaac cgtcgctgtt cgacgacgag gcatagccga cctgcagcag gcaatcgacg
     3301 acatgctctc tgctcccgtg tgtggagtcc acaagcatgt ccgcagcgac ttgattcact
     3361 tgcagcggcg cgcgcgcgag attgccagcg cgtcggtcct gagcgaaacg ccggtacggc
     3421 gctggactca ccgcctcgat acgttccttc tccatccgat cttcgggccg ttaatcctcg
     3481 cactcatcat gttcgtcatg ttccaggcgg tcttcgcgtg gagcgaacag ccaaaatcat
     3541 ggatcgagga ggcagtcggg tggctgtcga acatcgtcag tggttcactt ccacccggcc
     3601 tgctgcgctc gatgatcgtc gacggagcta ttgccggcgt cggagcggta gtcacctttt
     3661 tgccgcaaat ccttatcctg ttcctgttca tccttctcct tgaaggcacc ggttacatgg
     3721 ttcgagcagc gttcctgatg gacaagctga tgcacagcgt tggattgtcc gggcgcgcct
     3781 tcattccctt gctttcgagt ttcgcttgcg ccgttcccgg aatcatggcg acgcgaacga
     3841 tagacgaccc caaggacagg ctgacaacca tcctggtcgc gccgctcatg acctgctcgg
     3901 cgagactgcc ggtatatacg ctcatcatcg ccgcgttcat ccccaaccgt cgcctcgcct
     3961 ggggcattgg gcttcaaggg accgtgatgt ttggccttta cgtcatcggc gtcgtcgccg
     4021 ccctggctgc cgcgttcgtc gtccgccgag gagtgctgaa aggcaccggc ggggggttca
     4081 tgatggagct gccgaagtac caattgccgc gggttaagga tgtcgcgatt ggtctattta
     4141 cgcgcgccgc tatttttctg aagcgcgccg gtacgatcat tcttggaaca actatgatct
     4201 tgtgggcgct cgctagtata ccagttgctt caccgggtca gaaacagagc caagtctcaa
     4261 ttgcggggca tgtcgcgaac gtgatcgaga taatcgtccg cccgatcggt tttaatcacg
     4321 acatcagcat ggcccttctt ccggcaatgg cagcaaggga ggttgcggtg agttccatcg
     4381 ccaccgtcta ttcgatcgat gcgcccgatg agcgggaagg agcaactaag ctcgacgata
     4441 atctccagca ccgttggcct cttgcaacgg cactcgcatt cctcgcctgg ttcgtcttcg
     4501 cgcctcaatg catttcgacg atagccgtga cgcgtcgcga aacgaacggg tggaagtggc
     4561 cgttgttcat ggtcggatac ctgtttacgc tggcgtatgt cgccgctggc gcgacatact
     4621 ggatcg
//
LOCUS       DASRBJ010000012         3622 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_712406,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000012 DASRBJ010000000
VERSION     DASRBJ010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3622
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_712406"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(381..2162)
                     /locus_tag="VE968_00270"
     CDS             complement(381..2162)
                     /locus_tag="VE968_00270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014075774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HZU50286.1"
                     /translation="MAINIARPKGRSIRNLRMVWSFATKYPGHIIVAIIALAVAAAAT
                     VSIPWGFKFVIDNGFGPGAGSAHAIAPWFELLLAIVAVMALATAVRFYYVSWLGERTV
                     ADIRLAVHRNLLRLSPGFFEENRPAEITSRITVDTTIIEQVVGTTVSVALRNIVMAIG
                     CVATMLVLAPKLAGLMLIGIPIVLAPMLILGRRVRAISTRNQDRIAAVGTVTTEVLSA
                     MKIVQAFNQQKREASRFSDAVERVFATAKRRIALRAILTAFMIFLMIGAIVLVIWEGA
                     IDVAAGRMSGGTIAAFVLCGGLLAGAVGALSEVFGDLLRAAGASERLTELLDAEPEIA
                     PPAEPAQLPVPARGELAFENVTFHYPTRRETSALIDFSLTVHSRERLAVVGPSGAGKT
                     TIFQLAERFYDPDRGRILVDGVDLRDSDPADIRQRIAMVPQDTVIFAASARDNLRYGN
                     WDASEDQLWQAARDANAESFLRALPEGLDTFMGEGGARLSGGQRQRIAIARALLRDAP
                     LLLLDEATSALDAESERLVQDALDRLMEHRTTIVIAHRLATVRAADRIVVMDEGRIVE
                     EGTHASLSSRGGLYARLARLQFEDRAA"
     gene            2300..3265
                     /locus_tag="VE968_00275"
     CDS             2300..3265
                     /locus_tag="VE968_00275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50287.1"
                     /translation="MAADENQDRPGFSDILQELTDSDVVIEIASDEAGRQSLESGPVK
                     LLREAVQASYKALSGSVEVQLETTAVLEEINKRSLSVWLRVHRGGEGALANSSDASHL
                     KFLARGTLAIIAWMDGSSTHEVADLQQAIRVLAWGTSITTTAQPALPSSLALVDAVSA
                     WQKAKTSLKGSDRVRIITNNGLAKLDIRSTIDDPRSLLLSRKLVNHSADMIFLVEMPD
                     YEGSGRWKLKHGLARTTALAEGSTLLDRFYRRELDIRPGDALRCKVDVETSYGPDHEV
                     LSEHYRIVEIVEVLPAMKTDAGIAVPKKDAEMVREAEPQLEHAGA"
     gene            3369..>3622
                     /locus_tag="VE968_00280"
     CDS             3369..>3622
                     /locus_tag="VE968_00280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate depolymerase"
                     /protein_id="HZU50288.1"
                     /translation="MLYDAYEVQRSFLAGASKLAGLGAGWLTNPANPWGYTSMGPLVA
                     ASLEVFAHAAAPRGKPEFGIDRVHVGGKDVPVHEEILLRKP"
BASE COUNT          741 a         1096 c         1105 g          680 t
ORIGIN      
        1 gcacgtagcg cagcttcccg ctcttcctcg tctgcttcgt ccggatcgcg caagtccggg
       61 tcgcgttctg ccggcggcac ttctggaaag tcggcaacgt cgcgagcaaa gaacgccgag
      121 ccgggcgcaa cccggtcaac tggtgcgaag aagtcatcct cggcgactcg gggcaaatcc
      181 gcgtcacgcg gatccgcaaa atcgccatca agcggcgcag cgcaggcatc tcgtggcgct
      241 tctggacgtt ctcgccgagc cagttccgga tccgcgacaa acagcagtcg acgcggacgc
      301 ccccgcggca gttcgacagg cggttcgggt tcgggcggtg agtcgccaac gggaggaggc
      361 gaaggcggcg ggtcgaacgc ctaggccgct cgatcctcaa actgcagtcg tgcaagtcgc
      421 gcatagagtc cgccgcgact gctgaggctc gcgtgcgttc cttcctccac gatccgccct
      481 tcgtccatca cgactattcg gtcggcagca cgaacggtcg cgagccgatg cgcgatgacg
      541 atcgtcgtac ggtgctccat cagccgatcg agagcatctt gaacaagtcg ttcgctctcg
      601 gcgtccaggg ccgaggttgc ttcgtcgagc agtaaaagcg gcgcatcgcg caatagtgcg
      661 cgcgcgatcg cgatccgctg gcgttgacct cccgacagcc gagctccgcc ttcgcccatg
      721 aatgtgtcga ggccctcggg aagcgcgcgc agaaagcttt cagcgttcgc gtcacgagcc
      781 gcctgccaca gttgatcctc gctcgcgtcc caattgccgt agcgcaaatt gtcgcgagcc
      841 gaggctgcga agatcactgt gtcctgcggc accattgcaa tgcgctggcg tatgtctgcc
      901 ggatccgaat cacgaagatc caccccatca acgagaatgc gcccgcggtc cggatcataa
      961 aatcgctcgg caagctggaa gatcgtcgtc ttgccggccc ctgaaggacc aaccacggcg
     1021 agccgctcgc gtgagtgtac cgtcaggctg aagtcaatca gcgccgacgt ttcgcgccgc
     1081 gtcggataat gaaacgtgac attttcaaac gcgagctcgc cgcgcgcggg cacaggaagt
     1141 tgcgcaggct ctgccggagg ggcaatttct ggttcggcat ccaagagctc ggtcagtcgc
     1201 tcggacgcgc cagctgcgcg cagcaggtcg ccgaagactt cggagagggc gccgactgct
     1261 cctgcaagca ggccgccgca gaggacgaag gcggcgatcg tccctccgct cattcggcca
     1321 gcagcaacat cgatggcgcc ttcccagatg accagaacga tcgcgccgat catcaggaaa
     1381 atcatgaacg cagtaaggat ggctcttaga gcaatccggc gcttcgccgt cgcgaagacg
     1441 cgttcgaccg cgtcgctgaa ccgagaggct tcgcgttttt gctggttgaa cgcctggacg
     1501 attttcatcg cgctgaggac ttcggtggtg accgtgccca ccgccgcaat ccgatcctgg
     1561 ttgcgcgtcg agatcgcccg aactcggcgt ccgagtataa gcattggggc gagcacaatc
     1621 ggaatgccga tcagcatcag gccagcgagc ttgggcgcga ggacaagcat tgtcgcaacg
     1681 cacccaatgg ccattacgat gttgcgcagc gcgaccgaaa cggtcgtgcc aaccacttgt
     1741 tcgatgatcg tcgtatcgac ggtgatccga gaggtgattt ccgcgggcct gttttcttcg
     1801 aaaaagcctg gcgacaaccg gagcaggttc cggtgaacgg caagccggat gtccgccacc
     1861 gtgcgctctc caagccagga aacgtagtaa aagcgcacgg cagtcgcgag cgccatgacg
     1921 gcgacgatcg cgagaagcag ttcgaaccat ggcgcgatgg catgagcact accggcaccg
     1981 ggtccgaaac cattatcgat gacgaatttg aacccccagg ggatcgaaac ggtcgctgcg
     2041 gcggcaaccg caagggcgat gatcgcaaca atgatgtgac ccgggtattt ggtcgcaaaa
     2101 ctccacacca tccggagatt gcggatcgag cggccttttg gtctggcaat gttgatggcc
     2161 atgctgctcc ctaacagtca cacatcagtc ttccaactga gtgtgtcaga gtgggtattt
     2221 tgcagctggt cgaagcggtt gcttcgagtg tcggagcgcg tagtaaatgc ttgtttaacg
     2281 aatcgatcaa ggcacttgca tggcagcaga cgagaatcag gatcgcccgg gcttttccga
     2341 tattcttcag gaattgaccg acagcgacgt cgtgatcgag atcgcgtctg acgaagctgg
     2401 ccgacaatcg ctcgaaagcg ggccagtgaa gctccttcga gaagcggtcc aagcctcgta
     2461 caaggcgctc tcgggcagtg tcgaggttca gctcgaaaca accgcggtgc ttgaagaaat
     2521 taacaagcgg agcctctcgg tctggctcag ggttcatcgg ggcggcgagg gcgctcttgc
     2581 aaacagctcc gacgcttcgc acctcaagtt tctcgcgcgt ggcacgctcg ccatcatcgc
     2641 gtggatggac gggtcgtcga cgcacgaagt cgctgacctc cagcaggcga tccgcgtgct
     2701 tgcgtggggt acctcgatca cgacgacggc gcagccagct cttccctctt cgctggcgct
     2761 ggtcgacgcg gtgtcagcct ggcagaaagc gaagacatcg ctcaaaggca gcgatcgcgt
     2821 ccgtatcatt acgaacaacg gattagccaa gctcgatatt cgaagcacca tcgatgatcc
     2881 gcgctcgctg ttgctttctc gaaagctcgt gaatcactcg gccgacatga tctttctagt
     2941 cgagatgccc gactacgagg gatcgggacg gtggaagctc aagcatggtc tcgcgcgtac
     3001 cacggcatta gcggaaggta gcaccttgct agatcgtttt taccgtcgtg agctcgatat
     3061 caggcccggc gacgcgctcc ggtgcaaggt tgatgttgaa acatcatacg gccccgatca
     3121 cgaggtgctt tccgagcact accgcatcgt cgagatcgtg gaggttctgc cagcaatgaa
     3181 aacggatgcg ggcattgctg tcccaaaaaa ggacgccgaa atggtccgcg aggctgaacc
     3241 gcagctggaa cacgccggcg cataaccatt cgggcgaccg tcctcccgtt ctgcagtgca
     3301 acattcacct tgccacgaac gttaaggaac gccacatctc cgagcacggg gcgctttagt
     3361 gaggtttgat gctctacgat gcttatgagg tccagcgctc ctttctcgca ggtgcgagca
     3421 agctagccgg gcttggagcc ggctggctca ccaatccggc caatccctgg ggctatacat
     3481 caatgggccc gctcgtcgcg gcgagcctcg aggtgtttgc tcatgctgca gcgccacgcg
     3541 gtaagcccga gttcgggatc gaccgcgtgc atgtcggcgg taaggatgtc cctgttcacg
     3601 aggaaatcct acttcgaaag cc
//
LOCUS       DASRBJ010000013         7864 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_712636,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000013 DASRBJ010000000
VERSION     DASRBJ010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7864
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_712636"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1266)
                     /locus_tag="VE968_00285"
     CDS             complement(<1..1266)
                     /locus_tag="VE968_00285"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU50289.1"
                     /translation="MRRLLPKSMVGQMAVLFGIALLLAQLVSLTYLLIEREHFNRAQI
                     DGPAIARFTSTAADYVQAPPEFRALVLSDASRRGSHYAVASTAGEVAQLRRREDTEDR
                     LREGLSSAGVPSAEVRAAMDEAPATGPSPSRNRPYRAMLLSARLIDGEWLNARLLVPR
                     QLPLITPELVLGSLLLYLFVLSAAVFIARRIARPLHELRRAAEAFRGRNQPIEVRVTG
                     PVDLRNALVAFNDMNERLAGLIEEKDRTLGAIGHDLRTPLASLRIRVENVEPADERER
                     MIATIEEMSATLDDILTLARSGRSREQLERVDLSELVGPIAREFGELGKEVRVIAPAS
                     CVAMVQPNLIRRAVRNLLDNAFKYGSDVGIEVTCDEQAARIAVLDRGPGLAPDELGRV
                     TGAFYRGEPSRNRETGGAGLGLSIAETIVD"
     gene            complement(1263..1976)
                     /locus_tag="VE968_00290"
     CDS             complement(1263..1976)
                     /locus_tag="VE968_00290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017183967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZU50290.1"
                     /translation="MVEQPHVLLVEDERDIIDPLAIYLSKSGFRVSKARDAAAARAII
                     AAHAIDIALLDIMMPGEDGLSLAGFIRATTNTPIILLTAKAEETDRIVGLELGADDYV
                     TKPFSPRELVARIKAILRRSSDGRVKAPDADAFAFGPWVLRTGERQLIDKDGREVALS
                     TGEFNLLLALLTHPKRVLTRDQLLDLSQHRELGAFERSIDNHVSRLRKKVEVDPADPK
                     LIRTVWGGGYTLAADVKRL"
     gene            complement(2056..2451)
                     /locus_tag="VE968_00295"
     CDS             complement(2056..2451)
                     /locus_tag="VE968_00295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017182075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RcnB family protein"
                     /protein_id="HZU50291.1"
                     /translation="MRKIALALAGASVALTALVATPASAADFRGNDRGRVEQMQSRGF
                     AQNRGFAPDRGFAQNRFSQNNRFEGREWNRGDRFDNRYAVNYRVIDNPGYYNLRPAPY
                     GYRWVQSGNDAVLVAIASGIIGSIIGNAF"
     gene            complement(2568..2891)
                     /locus_tag="VE968_00300"
     CDS             complement(2568..2891)
                     /locus_tag="VE968_00300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017665365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DOPA 4,5-dioxygenase family protein"
                     /protein_id="HZU50292.1"
                     /translation="MIRNFHAHIYFNTDELEEARALGSAAAERFGVSQGHYHLRPVGP
                     HPRGSCQLTVPPDLFGEVAGWLALNRGKLTIFAHANTGDDLADHTSHVIWFGPSEPLN
                     LAIFG"
     gene            complement(2908..3789)
                     /locus_tag="VE968_00305"
     CDS             complement(2908..3789)
                     /locus_tag="VE968_00305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HZU50293.1"
                     /translation="MTADGSLLQRRYDDRYFTVRDGLKLHFRDYAGAANKPPLLCLHG
                     LTRNARDWAEFGERYSPGHRVLALEFRGRAESDYDPEPARYNPMTYASDVIELLDQLE
                     IKEAVFVGTSLGGLVTMVIAATAPARIKAAILNDVGPDVDPAGIARILTYVGKDVRFR
                     NWDDAADAIASNYGASFDNYTHDDWVEMAKRNCREENGEIRFDYDMAIAEPFKTAGPT
                     PQVDLWPLFAALGKKPLLVVRGEKSDLLTARTAAKMEAVAAQMKLIVVPGVGHAPELN
                     EPEVVRAVDEFLDSLGQ"
     gene            complement(3786..4424)
                     /locus_tag="VE968_00310"
     CDS             complement(3786..4424)
                     /locus_tag="VE968_00310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019367616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HZU50294.1"
                     /translation="MGLKVGQRAQLGATAAAKPPRTARGERTMRKILDAAREEFGARG
                     FSETSIVGITQRAGVALGTFYTYFESKEGLFQALVRDMSAQVRDTVGPALAEGSDRLD
                     SERRALAAFLRFALDHRDIYRIIDESEFVDPAAYREHYESTASRIAGRLQRARAEKEI
                     DASFTDDDLEVVAWGMMGANVFLGLRFAVWDEKDADEVAGIMTKVWRKGFSQ"
     gene            4538..6934
                     /locus_tag="VE968_00315"
     CDS             4538..6934
                     /locus_tag="VE968_00315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007013161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU50295.1"
                     /translation="MRVISARVALLGTVAAAAFFTTPAFAQENPNTSPATANNAQTQT
                     TAATGNDQQIVVTARRRNELLLNVPVAVTAYSGEQLDRQGALDITDVSATTPNVTLEV
                     SRGTNSTLTPFIRGIGQQDPVAGFEQGVGLYLDDVYLNRPQAAVLDIYDVERIEVLRG
                     PQGTLYGRNTIGGAIKYVTRRIPMDGPHFSIRTNLGTYGQADLITQASSPIGGGFAVG
                     VAAARLSDDGFGKNLTTGERNYNKDVIATRGTIEFAPDDSIFFRLSGDYTADDSNPRG
                     GHRLIANLVTGEPPLSNVYDSEGGIDDPRQRVRAGGIALNGEIGLNDWLKFRTITAYR
                     KDDTYTPIDFDATPAVDVDVPAIYRNHQFSQELQLVADKGPLQGVAGLYYLNARAYDV
                     FDVRLYTTLPSLLPGLTAATTGDVKTRTWAGFADLTYNVSPQWSVSLGGRYTNDHRHA
                     IVFRRNLILGGSPELGGSYPYDAAGVQLGAPTSNFNGSRTDTAFTPRASISFKPDTNN
                     NIYISYSKGFKGGGFDPRGLTTQAPSQSTTDIYNFMAFKPEKVDSYELGWKASVFHNR
                     LQFAAALFDAEYTDVQVPGSAGCVVNGVATFCGITTNAGKARFRGAELETNWRMASDL
                     ASAGDHLSFAGTLGYLDAKYLHYVTNIAGVGPVDVAAYRKIQNTPKWTLSGTLDYETP
                     VGSGRLDLNTTLSYRSSSQQFELATPMLDQPGFALWDANLVWRSNDRHWELGLHGKNL
                     ANKKYIVSGYNFLAQNPYTGAYLTTAAGKYISTLGTTGVLTAYYGNPRQVFLSAAYNF
                     "
     gene            7253..>7864
                     /locus_tag="VE968_00320"
     CDS             7253..>7864
                     /locus_tag="VE968_00320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010160433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HZU50296.1"
                     /translation="MATKAIDAPRNTTSGTRNKQRRIRKIFGNIHEISEMPNLIEVQR
                     ESYEQFLRSVPAIGYVSGLEKTLRSVFPIVDFAGTAHLDFDHYELEDPKYDTDECRQR
                     GLTYAAPMRVTLRLTTFEIDPETEAKSVIDIKEQDVYMGDMPLMTENGTFIINGTERV
                     IVSQMHRSPGVLFDHDRGKTHASGKFLFAARVIPYRGSWLDFEF"
BASE COUNT         1611 a         2447 c         2302 g         1504 t
ORIGIN      
        1 atcgacgatt gtctcggcga tgctcaatcc gagccccgct cctcctgtct cgcggttgcg
       61 cgagggttcg ccgcggtaga acgcgcccgt aacgcggccc agttcgtcag gagcaagtcc
      121 tgggccgcga tcaagaacag cgatcctcgc cgcctgttcg tcgcacgtca cttcgatccc
      181 cacatcgctt ccatatttga acgcattgtc gagaagattt cgcaccgctc gtcggatgag
      241 gttcggctgg accatggcaa cgcacgaagc aggagcaatg accctgacct ccttgccaag
      301 ctcgccaaac tcgcgcgcaa ttggtcccac cagctcacta agatcgacgc gttccaattg
      361 ctcgcgcgat cgaccggacc gggcaagcgt cagtatgtcg tcaagcgtcg cgctcatctc
      421 ctcgatggtc gcgatcatgc gctcgcgctc gtccgctggt tcaacgtttt ccacgcggat
      481 tcgaagcgat gcgagcggcg ttcggaggtc gtgacctatt gcgccaaggg tacgatcctt
      541 ttcctcgatg aggcccgcga ggcgctcgtt catgtcgttg aacgcgacca gtgcattcct
      601 aagatcgact gggccggtca ctcgcacttc gatcggctgg tttcgacccc ggaacgcttc
      661 agcggcacgt ctcaattcat gcaaggggcg cgcaattcgc cgggcaatga agaccgctgc
      721 tgaaaggaca aaaaggtaga gcagcagcga tcccagtacc aattcgggcg taatcagtgg
      781 cagctgccga ggcacgagca ggcgcgcgtt cagccactcg ccatcgatga ggcgcgccga
      841 cagtagcatt gctcggtagg gtcggttgcg cgaaggagaa gggccggtgg cgggcgcctc
      901 gtccatcgcg gcgcgcacct cagcgcttgg aacgcctgca gaactcagtc cctcgcgcag
      961 acgatcttcc gtatcttctc tgcgcctcag ctgcgcgact tcaccagcag tgctcgcgac
     1021 cgcgtaatgg gagccgcggc gggacgcatc gcttaacacg agagcgcgga attcgggcgg
     1081 agcctgaacg taatcggcgg cagtcgaggt gaatcgcgcg attgcgggtc cgtcaatctg
     1141 tgctcgattg aaatgctcgc gctcgatcag aagataagtg aggctcacaa gctgggcgag
     1201 cagcagcgcg attccaaata gcaccgccat ctggccaacc atgcttttgg gtagaaggcg
     1261 cctcacagcc gtttcacatc cgctgcaagc gtatagccac cgccccagac cgtcctgatc
     1321 agcttgggat ctgccgggtc aacttccacc ttcttgcgaa ggcggctgac gtggttgtcg
     1381 atactgcgct caaatgcccc aagttcacga tgttggctaa gatcgagcaa ctgatcgcgc
     1441 gtcagcactc gcttgggatg tgtgaggagc gcaagcaaaa ggttgaactc gccggtcgag
     1501 agcgcaacct cgcggccatc cttatcgatc aattgccgtt cgccagtccg aagaacccac
     1561 ggtccaaagg caaaggcgtc cgcatcgggc gccttcacgc ggccgtccga cgagcgacga
     1621 aggatcgcct tgatccttgc gacaagttcg cgcgggctga atggcttggt cacataatcg
     1681 tcggcaccaa gctcaaggcc gacgatgcga tccgtctcct cggccttcgc ggtcagaaga
     1741 atgatcggcg tgttcgtcgt cgcccgaatg aaaccggcga gcgaaagccc gtcttcgccg
     1801 ggcatcatga tgtcgagaag ggcaatgtca attgcatgcg cagcaatgat cgctcgggct
     1861 gccgccgcgt ctcgtgcctt cgaaacgcga aaaccgctct tgctgagata gattgcaagc
     1921 ggatcgatga tgtcgcgctc gtcctcgaca agaagtacgt ggggttgttc gaccatctgt
     1981 gtcacttagc gctagcatcg ggaaattacg aaagctccgg agccaggcgg ccccggagcc
     2041 tcgttcattc atcgcttaga acgcattgcc gatgatgctc ccgatgatgc cgctcgcgat
     2101 tgcgacaagg acagcgtcat ttcccgactg gacccaccgg tagccgtaag gcgcggggcg
     2161 aaggttgtaa tagcccggat tgtcgatcac ccgatagttc acggcatagc gattatcgaa
     2221 gcgatcgccg cggttccact ctcgtccctc gaagcgattg ttctggctga agcggttctg
     2281 ggcgaagcca cggtccggcg caaatccacg gttctgggca aaaccacggc tctgcatctg
     2341 ctcgacgcga ccgcggtcat tcccccggaa atcagccgcg gacgcgggcg ttgcaacaag
     2401 agcggtaagc gcaacggaag cgccggctag tgcaagggca attttcctca tttttcttct
     2461 ccatcaatca aacgccggct tggcgttgat ggagaattgg gcccttcgtg tcgcacaact
     2521 atccgcgaaa agcgggtaaa ttgtcgcaaa ttgtcgcaag aagatggcta gccaaaaatc
     2581 gcgagattga gcggctcgct cggtccgaac cagatcacgt ggctggtatg gtcagcaaga
     2641 tcatcgccgg tgtttgcatg cgcgaagatg gttagcttgc cgcgattgag tgccagccag
     2701 ccggcaacct cgccaaagag gtccggcgga acggtgagtt ggcagctgcc ccgcggatgc
     2761 ggcccgacgg gtcgaagatg ataatgtcct tgcgaaaccc cgaaccgctc tgcagcggcg
     2821 cttccgagag cgcgagcttc ctcgagctcg tccgtattga agtagatgtg cgcgtgaaag
     2881 ttgcggatca cgcgcagacc gctgcgccta ttgccccaac gagtccagaa attcatcgac
     2941 tgcgcgcacg acctcaggct cgttcagttc cggggcgtga ccgacgccgg gaacgacgat
     3001 gagcttcatc tgcgccgcaa ccgcctccat cttcgccgcg gtccgcgccg tcaaaagatc
     3061 gcttttttca ccgcgcacca cgagcagtgg cttctttccg agtgcggcga acagcggcca
     3121 gagatcgacc tggggcgtgg gtcctgcggt cttgaatggt tcggcgattg ccatgtcgta
     3181 atcaaagcgg atctcgccat tctcttcccg gcagttgcgc ttggccattt cgacccagtc
     3241 gtcgtgcgtg tagttgtcaa aggaagcacc atagtttgac gcgatcgcat ccgcggcatc
     3301 gtcccaattc ctgaaccgga cgtccttgcc aacataagtc aaaatgcgcg cgatcccggc
     3361 cgggtcgacg tccggaccga cgtcattgag aattgctgcc ttgatccggg cgggagcggt
     3421 cgctgcaatc accatggtga cgaggccgcc gagggacgtg ccgacgaaaa ccgcctcttt
     3481 gatttcgagc tggtcaagca attcgatgac gtccgatgcg tacgtcatcg gattgtaccg
     3541 cgcgggctct ggatcatagt cgctctcggc tcgtccgcga aactcgaggg cgagcacccg
     3601 gtggcccggc gaataacgct cgccgaactc ggcccagtcg cgcgcgttgc gtgtcagccc
     3661 gtgaaggcac agcagtggcg gcttgtttgc ggcacccgcg taatcgcgaa agtgaagttt
     3721 caagccatcg cggaccgtga agtagcggtc gtcatagcgg cgttggagca acgagccgtc
     3781 ggccgtcatt gggaaaagcc tttccgccac accttcgtca tgatgcccgc gacctcgtcg
     3841 gcgtctttct cgtcccaaac ggcaaatcgg aggccaagaa agacgtttgc tcccatcatg
     3901 ccccaggcga ccacctcgag atcgtcgtcg gtaaagctcg catcgatttc tttttcggcg
     3961 cgtgcgcgtt ggaggcggcc cgcgatgcgg cttgcggtgc tttcgtaatg ctcgcggtag
     4021 gcggcggggt cgacgaactc ggactcgtcg atgatccggt agatatcgcg gtgatcgagc
     4081 gcgaaacgaa ggaaagctgc caatgcgcgc cgttcgctgt cgagccggtc cgacccctcg
     4141 gcaagcgctg gcccgaccgt atcacgcact tgcgctgaca tgtcgcgaac gagggcctgg
     4201 aagagcccct ccttcgattc gaaataggtg tagaacgtcc cgagcgcgac gccagcgcgc
     4261 tgcgtgattc caacgatcga ggtttccgag aagccgcggg cgccgaattc ctcgcgcgcc
     4321 gcatcgagaa tcttgcgcat cgtccgctcg ccgcgagcgg tgcgtggagg cttggccgcc
     4381 gccgtagcgc ccaactgcgc cctttgcccg actttcagcc ccatttccca cccctatcgc
     4441 cgctacttat aatcgcaagt tgaaagacgg ttcaactttc attatgcgaa cagcagtgca
     4501 ggcgcaatca gagcgactgc aaaggggaga gacttcaatg cgcgtcattt ctgcacgcgt
     4561 cgcgttgctt ggtacggttg ccgccgcggc gttcttcacc actccggcct tcgctcagga
     4621 aaatccgaac acgagcccgg cgacggcgaa caatgcacag acgcagacca ccgccgcgac
     4681 cggcaatgac cagcagattg tcgttacggc acgtcggcgc aacgaactcc tgctcaacgt
     4741 cccagttgca gtcacggctt attcgggcga gcagctcgac cgccagggtg ctctcgacat
     4801 taccgatgtc tcggcaacga cccccaacgt cactcttgag gtcagccgcg gcaccaacag
     4861 cacgttgacg ccgttcatcc gcggcattgg ccagcaggat cccgtggcgg gatttgagca
     4921 gggcgtcggg ctttacctcg acgatgtcta tctcaaccgt ccccaggccg ccgtgctcga
     4981 catttacgac gtcgaacgca tcgaggtgct gcgcggaccg cagggaacgc tctatggtcg
     5041 aaacaccatc ggcggcgcga taaagtacgt gacgcgcagg atcccgatgg acgggcccca
     5101 tttcagcatc cgaaccaatc ttgggactta cggccaggcc gatctcatca cgcaggcctc
     5161 aagtccgatc ggcggcggct ttgccgtcgg cgtcgcggcc gcacggctca gtgacgacgg
     5221 cttcggcaag aacctgacga ccggcgaacg caattacaac aaggacgtga ttgcgacgcg
     5281 cggaacgatc gagtttgcgc ccgacgacag catcttcttt cgcctttcgg gcgattatac
     5341 cgccgatgac agcaatccac gcggcggaca tcgattgatt gcaaatctcg tcactggcga
     5401 accgccgcta agcaatgtct acgacagcga gggcggaatt gacgatcctc gccagcgggt
     5461 tcgcgccggg ggcatagcgc tgaacggcga gatcggtctt aacgactggc tcaaattccg
     5521 gacgatcacg gcctatcgca aggacgacac ctatacgcca atcgactttg atgcgacgcc
     5581 ggcggtcgac gttgacgtgc cggcgatcta tcgcaaccac cagttcagcc aggaattaca
     5641 gctcgttgcc gacaagggac cgctgcaggg cgttgccggc ctctattatc tgaacgcgcg
     5701 cgcctatgac gtgtttgacg ttcgactgta cacgacactt ccttcgcttc ttccggggct
     5761 gacggccgcg acgacgggag acgtcaagac gcgcacctgg gcaggatttg cggaccttac
     5821 ctacaacgtc agtccgcaat ggagcgtctc gcttggtggc cggtacacga acgatcaccg
     5881 gcacgcgatt gtcttccgtc gcaacctcat cctcggcggt tcgcccgagc ttggcggttc
     5941 ttacccgtac gacgcggccg gcgttcagct cggcgccccc acgtcaaatt tcaacggaag
     6001 ccgcaccgac acggcgttca caccgcgggc gtcgatcagc ttcaagccgg acacgaacaa
     6061 caacatctac atcagctatt cgaaaggctt caaaggcggc ggtttcgacc cgcgcggcct
     6121 tacgacgcag gcaccctcgc aaagcacgac ggacatctac aacttcatgg cgttcaagcc
     6181 cgagaaagtg gacagctacg aacttggctg gaaagcatcg gtcttccaca acaggctgca
     6241 gtttgctgcc gcgctgtttg atgccgaata taccgacgtc caggtcccgg gatcggccgg
     6301 ctgtgtcgtc aatggcgttg cgactttctg cgggatcacg acgaacgccg gcaaggcgcg
     6361 cttccggggc gcggagctcg agaccaactg gcgcatggcg agcgatctcg cgagcgcggg
     6421 cgaccatttg agctttgccg gaacactcgg ctatctcgac gccaaatatc ttcattatgt
     6481 gaccaacatc gctggtgtcg gaccggttga tgtcgcggcc taccgcaaaa tccagaacac
     6541 acccaagtgg acgctgagcg gaacccttga ttacgagacg cctgttggaa gcggccggct
     6601 cgacctcaac accacccttt cctaccgtag cagcagccag cagttcgagc tcgcaacacc
     6661 gatgctcgac cagccaggtt ttgcgctatg ggacgcaaac ctcgtctggc gctcgaatga
     6721 tcgtcactgg gaactcggac tgcatggcaa gaaccttgca aacaagaagt acattgtgtc
     6781 gggctacaat ttcctcgccc aaaatcccta taccggagcc tatctcacga cggccgccgg
     6841 caagtatatt tccactcttg ggactaccgg agtgctgacc gcttattatg gcaatccccg
     6901 ccaggtgttc ctgtcggcag cctataattt ctaaggaaaa aagcgcgatc gtgaagatcg
     6961 gttggcggag cgctcaagcc atgagcgctc cgccttcttt tttacggcgc caagagcctt
     7021 gcaccaggcc gggaaaagcc tatatgggcc ctatccaaca aatagacggc tccgccgcac
     7081 gacttcgtgc gtccggggct tttcccgtcc tctccgggac agggtccgaa cggcgcacgg
     7141 accgcacgca ttggagaggg tagcggggca gcgctccacc atatgcccgg cgaattgccc
     7201 gggaaactag cgggggcgcc actgcgcgtc gccgcatagc gcagggaagc acatggccac
     7261 caaagcgatc gacgcacctc gtaacaccac cagcggaacc agaaacaagc agcggcgcat
     7321 ccgcaagatc ttcggcaaca ttcacgaaat ctccgagatg ccgaacctca tcgaggttca
     7381 gcgcgaaagc tatgagcagt tcctccggtc agttcccgcc attggctatg tctcggggct
     7441 cgagaagaca ctgaggtcgg tgttcccgat cgtcgatttt gccgggacgg cgcatctcga
     7501 ttttgaccat tacgaactcg aggaccccaa gtacgacacg gacgaatgcc gccagcgtgg
     7561 tcttacctac gcagcgccaa tgcgtgtcac gctgcgcctc acgacctttg agatcgatcc
     7621 agagaccgaa gccaagtcgg tcatcgatat caaggagcaa gacgtttaca tgggcgacat
     7681 gccgctcatg accgagaacg gcacgttcat catcaacggc actgagcgcg tcatcgtcag
     7741 ccagatgcac cgctcgccgg gcgtgctgtt tgaccacgac cgcggcaaga cgcacgcaag
     7801 tggcaagttc ctgtttgcag cgcgtgtcat tccttaccgg ggcagctggc tcgacttcga
     7861 gttc
//
LOCUS       DASRBJ010000014         7790 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_609999,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000014 DASRBJ010000000
VERSION     DASRBJ010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7790
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_609999"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(145..801)
                     /locus_tag="VE968_00325"
     CDS             complement(145..801)
                     /locus_tag="VE968_00325"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZU50297.1"
                     /translation="MPRVLITGANRGIGLEFARQYAQAGWTVLASARDRSPELASLGV
                     RVELLDLSDPSAVNSFAARIDPGLDLFIANAGTNHPMMTDGAQNARDWQSMMMVNAIA
                     PYQLGKALLTRMSPGGKMIAISSGMGSIGDNGGGWVPYRTSKAALNMAWSCLAIEARP
                     HRTTCVLLSPGWVKTRMGGKGAEITAEESVTDMRALIDRVEFSDSGRFLRRSGSELPW
                     "
     gene            complement(889..1824)
                     /locus_tag="VE968_00330"
     CDS             complement(889..1824)
                     /locus_tag="VE968_00330"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HZU50298.1"
                     /translation="MKLLAGNSNLPLARSICDYLEVPLTDASVRRFADEEVFVEVNEN
                     VRGEDVFVIQSTSYPANDNLMELLICIDALRRASAKRITAVLPYFGYARQDRKPGPRT
                     PISAKLVANLITTAGANRVLSIDLHAGQIQGFFDIPTDNLFASPVIATDIHARFGNRK
                     LMVVSPDVGGVVRARGLAKRLNNAPLAIVDKRRERAGESEVMNIIGDVDGRTCILVDD
                     IVDSAGTLCNAAAALKQQGATEVFAYCTHGVLSGAAAARVAKSELSELVVTDTIWTGE
                     ADPKDCKIRRLTIAPLLAEAIRRISDEASVSSLFD"
     gene            1917..3578
                     /locus_tag="VE968_00335"
     CDS             1917..3578
                     /locus_tag="VE968_00335"
                     /EC_number="6.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014078010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HZU50299.1"
                     /translation="MTDRLRIALAQMNQRVGDLEGNASAILEMRRRARGADLLVCPEL
                     QLVGYPPEDLVLKPEFIRRVHERTDELIQATIEPGPALLIGTIVNEGGSNYNAMLLAD
                     GGRVIGRTFKHELPNYGTFDEKRIFAQGPLPDPIEWRGVTLGVPICEDMWLEPVCAHL
                     AQLGAELFIVPHGSPYELDKNLKREHLARARTTHTSLPLVFLNRVGGQDELAFDGSSF
                     IMHPDGEIVVQMADWDDDFLMTEWERSRDGWRCETRSHHVLDQFPADIYRAMTVALRD
                     YVSRNGFPGVILGLSGGIDSALSAAVAVDALGADKVWGVMLPSKYTSEESLDDARECA
                     RLLGCRHDVLSIAPAVEALSQMLPNMSGLAAENVQARLRMVALMALSNSNGQMLLTTG
                     NKSEMSVGYATLYGDMAGGYSVLKDAYKTTVFALARWRNENKPDGALGPDGPVMPAGI
                     ITKPPSAELRPGQKDEDTLPPYSVLDRILEGLVDQEMSVNEVAISTGEDAALVADIES
                     KLLKAEYKRRQAPPGVKIGNRNFGRDRRYPITNFFHTGPRVKTPR"
     gene            3575..4894
                     /gene="gltX"
                     /locus_tag="VE968_00340"
     CDS             3575..4894
                     /gene="gltX"
                     /locus_tag="VE968_00340"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HZU50300.1"
                     /translation="MSVATRFAPSPTGRLHVGNIRTALHNYLFARKRAGTFILRIDDT
                     DQERSTDEFDQSIRDDLQWLGLIPDRTVRQSERFAIYEREFDRLRSSGRVYECYETPE
                     ELELRRKVLLGRGLPPVYERKASGAPVPSGRSPHWRFKLDHDSPIMWTDLIRGEQRFD
                     PRLLSDPVVRREDGSWLYLLPSVIDDADLGVTHVVRGEDHVSNSAVQIQMFEALDSKP
                     PMFAHEALLVSSEGKLSKRLGAYGTDQLRQEGIEPMALLDVLARIGTSQPIEAIATLE
                     ELAREFDFATFGRAPAHFDPHEVELLNARLLHKLDFSSVAKLLPAGAKEDDWLLLRRN
                     LARLADFPGWWRVLNGELEPPELSHDERLLVKDAASIAEQIDWGHEPWVELTDTLKRS
                     SGKRGRELFHPLRLALTGRDSGPEMASLVARLGKERTIKRLEAAARR"
     gene            4987..5655
                     /locus_tag="VE968_00345"
     CDS             4987..5655
                     /locus_tag="VE968_00345"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HZU50301.1"
                     /translation="MLHYGVSPAGAERPSSPQAMLLIISAHVALVAAVMSAKMELPRR
                     ADQGAPLIRIRVAPPPPPETARPLRSSKSTAVTRPVEAPVAAIRPAAPEAMPSASAIY
                     PADDSAVSVVAPTTVPPSPPSLPVERHHQGPRLLTPLSELKPPYPESKLLAEEEATLT
                     LRLEIDDRGRVIKVDSVGYADRAFLDAARRYIIAHWRYDPATEGDHAVPADIVVTLRF
                     QLDG"
     gene            5756..6019
                     /locus_tag="VE968_00350"
     CDS             5756..6019
                     /locus_tag="VE968_00350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50302.1"
                     /translation="MRHRSREQVIGGALAFLVTAIIVIEFLVDAKIGTAPPPQVVEVE
                     LYPANRTDAQIIADQKKDMADKQAAQKERQREFQKLAKQLHID"
     gene            6012..6989
                     /gene="ribD"
                     /locus_tag="VE968_00355"
     CDS             6012..6989
                     /gene="ribD"
                     /locus_tag="VE968_00355"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HZU50303.1"
                     /translation="MTDDRKWMGEALRLGEEARGQSAPNPNVGCVIVAPGGRVAGKGA
                     TAKGGRPHAEAAALAEAVTRAKGATVYVTLEPCAHESARGPACTELLLAAKPARVVVA
                     LKDPDPRTSGKGIQRLRRAGIEVSLGLCRSAARRSLAGWLMQLKRGRPRITLKLALSI
                     DGKIALRSGESKWITGEEARRHVHLERAHSDMILVGRGTFIADRPRLDVRLPGLEERS
                     PRKALLTRGSMVEGWEVLHSPRDVFGLHDVNDLLIEGGAATATAFLSENLVDRILIYR
                     APIIVGEGKSSFGYVGLDAIADAHNRWALVDEQKLGVDRLEVYERVAAD"
     gene            7001..7606
                     /locus_tag="VE968_00360"
     CDS             7001..7606
                     /locus_tag="VE968_00360"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HZU50304.1"
                     /translation="MFTGIVTDVGEVISAEQRDDMRLVIATNYPVDSIDLGASISCSG
                     VCLTVVDKSNRWFAVEVSGETRSKTAAAHWHPGARVNLERALRLGDELGGHLVTGHVD
                     AVGEVLNVCPEGGSMRVDLRIPRELARMVAPKGSLTVDGVSLTVNEVHDAGDGTNVTI
                     NIIPHTAAQTTLGELSAGQQLNVEVDVLARYLARMLATSPH"
BASE COUNT         1563 a         2295 c         2364 g         1568 t
ORIGIN      
        1 tgagcttggg cattttcgtc tcctttgcgc caatcggcgc gacgttttcc aaccgccacg
       61 gcagccctta ctggccgggc cattggtatt ttccaaggat ctggaaagcg cgcgcctata
      121 aaggcgagcg ataagcaagg caacctacca cggaagctct gatccactgc gccgcaggaa
      181 gcggccactg tcgctgaatt ccacacggtc aatcaacgct cgcatgtcgg tcacgctttc
      241 ttctgccgtg atttcagcgc ctttgccgcc catccgcgtc ttcacccatc ccggactaag
      301 cagcacacaa gtggtgcggt gcggtcttgc ctcgatcgca agacagctcc acgccatatt
      361 cagtgctgcc ttcgacgttc ggtatggcac ccacccgccg ccattgtcgc cgatgcttcc
      421 catgccgctt gaaatggcaa tcattttgcc cccggggctc atgcgggtga gaagcgcttt
      481 tccaagctga tagggcgcga tcgcgttcac catcatcatc gactgccagt cccgcgcatt
      541 ctgcgcgccg tcagtcatca tgggatgatt cgtgccagca ttggcgatga acaggtcaag
      601 gccagggtcg atcctcgcgg caaaggaatt cactgcggaa gggtcgctga ggtcgaggag
      661 ttcaacacgc acgccaagcg aagccagctc cggactgcgg tctcttgcgg acgcgagcac
      721 ggtccatcct gcctgcgcat attgacgagc gaattcaaga ccaatgccgc ggttcgctcc
      781 agtgatcagc actcttggca tgtcagttcc tcgtcacgcg aaatgatgct cgaaaacgaa
      841 cgcgcctgag atcgcagcgg cgttgaaccg ggtccgatcg tcgcaacctt agtcgaacag
      901 actggatacg gatgcctcat ccgatatccg gcgaatcgcc tcggcgagaa gcggagcaat
      961 tgtcagccgc cggatcttgc aatcttttgg atcggcctcg cctgtccaga tcgtatccgt
     1021 gacaaccagc tcactcaact cggattttgc cacgcgcgca gcggcagcgc ctgaaagaac
     1081 gccatgggtg cagtatgcga aaacctcggt tgcaccctgt tgcttcagtg ccgcggccgc
     1141 attgcagagc gtccccgctg aatcgacaat gtcatcaacg aggatgcaag tacgcccgtc
     1201 tacatcgcca atgatgttca tcacctcgga ctcgcccgcg cgctcacgcc gtttgtcgac
     1261 gatagcgagt ggcgcattgt tcagccgctt ggctagacca cgagcacgaa ccacgccgcc
     1321 gacgtccggc gacacaacca tcagcttgcg attgccgaat cgggcatgga tgtcggtcgc
     1381 aatgacgggt gacgcaaata agttgtcggt ggggatgtcg aaaaaaccct ggatctggcc
     1441 ggcgtgaagg tcgatcgaaa gcacgcggtt cgcgccagcg gtggtgatga gattggcaac
     1501 gagcttggcg gagattggag ttcgagggcc gggcttacgg tcctgccgtg catagccgaa
     1561 ataagggaga acggcggtga ttcgtttggc tgacgcgcgt cgcagcgcgt caatgcagat
     1621 cagcaactcc atgagattgt cgttggcggg gtagctcgtc gactgaatta caaagacatc
     1681 ctcgccgcgc acgttctcgt ttacctcgac gaaaacctct tcatcggcga agcgccggac
     1741 acttgcgtcc gtcagtggca cctcgagata atcacagata gatcgggcca gcggcagatt
     1801 gctgttcccg gcgagcaatt tcatgggtgc attcccctaa gcgtgacttg gctttagcga
     1861 ggcagtcgcg gttccgtaaa ggttgccgcg gcggcgcgcg tcgctaaatc ggaccgatga
     1921 ccgatcgcct tcgcattgca cttgcccaga tgaaccagcg cgttggtgac ctcgaaggca
     1981 acgcatcggc gattctggaa atgcggcgca gggcgcgcgg tgccgatctt ctcgtctgcc
     2041 ccgagctcca gctggtcggc tatccacctg aagatctcgt gctgaagccc gagttcataa
     2101 ggcgcgtcca tgagcgtacc gatgaactaa tccaagcgac gattgagccg ggccccgcgc
     2161 ttctgatcgg cacgatcgtg aacgaaggtg gctcaaatta caacgcgatg ctgcttgctg
     2221 atggcggtcg ggtgattggt cgaacgttca agcacgagct tccgaactat ggcacattcg
     2281 acgagaagcg gatctttgcg cagggtcctc ttccagaccc gatcgagtgg cgtggcgtca
     2341 cccttggcgt accaatctgc gaggatatgt ggctcgagcc cgtctgtgcg catctcgcgc
     2401 aacttggagc ggagctcttc atcgtccctc acggaagccc ctacgagctc gacaagaact
     2461 taaagcgcga acatctcgca cgagcgcgca cgacacacac gagccttccc ctggtcttcc
     2521 tcaatcgtgt cggtggtcag gacgagctcg cgttcgatgg atcatcattc atcatgcatc
     2581 ctgacggcga gatcgtcgtc cagatggcag actgggacga tgatttcctc atgaccgaat
     2641 gggagcgaag tcgcgacgga tggcggtgcg agacgcgctc gcaccatgtc cttgatcagt
     2701 tcccggccga catttaccgc gcaatgacgg tcgcgcttcg agactatgtc tcgcgcaacg
     2761 gctttcctgg tgtaatcctc gggctgtcag gaggcattga cagcgcgctg tccgcggccg
     2821 ttgccgtcga cgcacttggt gcggacaagg tctggggggt aatgctcccg tcgaaatata
     2881 cgagcgagga gagtcttgac gacgctcgtg aatgcgcgcg cctgctcggt tgccgccatg
     2941 acgtcttatc catcgcgcct gcggtcgaag cgctgagcca gatgttgccg aacatgagcg
     3001 gcctcgccgc cgaaaatgtt caggcgcgct tgcgaatggt tgcgctcatg gcgctctcca
     3061 attcgaacgg ccagatgttg ctcacgactg ggaacaaaag cgagatgagc gtcgggtacg
     3121 cgacactata tggcgacatg gccggtggct actcggttct gaaggacgcg tataagacga
     3181 cggtttttgc actcgcgcgc tggcgcaacg agaacaaacc ggatggtgct ttagggcctg
     3241 atggtccggt catgccggcc ggcatcatta cgaagccgcc cagtgccgaa cttcgccccg
     3301 ggcagaagga cgaggatacg ttgccaccct attcggtgct cgaccggatc cttgaggggc
     3361 tggtcgacca ggaaatgtcc gtgaatgagg tcgcgatttc gaccggcgag gatgctgcac
     3421 ttgtcgccga catcgaatcg aagctgctga aggccgaata taagaggcgc caggcgccgc
     3481 cgggggtcaa gatcggcaat cgcaattttg gaagagaccg gcgctatccg atcaccaatt
     3541 tcttccacac cgggccgcgg gtaaagacac cgcgatgagc gtcgccacgc gttttgcgcc
     3601 gtcaccgaca ggtcgtctcc acgtcggcaa catccgaact gcgcttcata actatctgtt
     3661 cgcgcgaaaa cgtgccggaa cgttcatcct gcgaattgat gacaccgacc aggagcgttc
     3721 gacggatgag ttcgaccaat cgatacgcga tgatctccag tggttgggac ttatacccga
     3781 ccggaccgtg cggcagtccg aaagattcgc aatctatgag cgagagtttg atcgtctgag
     3841 aagttccgga cgggtttatg agtgttacga aacgcccgaa gagctggaac ttcgtcgcaa
     3901 ggtgcttctt ggacggggct tgcctccggt ttatgagcga aaggcgtccg gtgctcccgt
     3961 gccaagcggg cgttcgccgc actggcgctt caagctcgac cacgactcgc cgatcatgtg
     4021 gactgatctc atccgcggag aacagcggtt tgatccgcgg ctgctaagcg atccggtggt
     4081 ccgaagggaa gatgggagct ggctgtatct tctaccgagc gtcatcgatg atgccgacct
     4141 tggcgttacg catgtggtgc gcggcgaaga tcacgtctcg aatagcgcgg tgcaaatcca
     4201 aatgttcgag gcgctcgatt caaagccacc gatgttcgcc cacgaggcgt tgctcgtgag
     4261 ttccgagggc aaattgtcca agcgacttgg cgcgtacgga accgatcagc ttcgccaaga
     4321 aggtatcgag ccgatggcat tgctggacgt ccttgcccgg attggaacgt cgcaaccaat
     4381 agaggccatc gccacgctgg aggagctcgc gcgggagttt gatttcgcaa cgttcgggcg
     4441 tgcaccagcc cacttcgatc cgcacgaggt tgaactcctt aacgcgcgat tgctgcacaa
     4501 gctggacttc tcctcggtcg cgaagctcct gccggccggc gccaaggaag atgattggct
     4561 gctgttgcgc cgaaacctgg ctcggcttgc ggattttcca ggatggtggc gcgtgctcaa
     4621 cggcgagctc gaaccgcccg agcttagcca cgacgagcgg ttgctggtga aggatgcggc
     4681 gtcgattgcc gagcagattg actggggtca cgagccctgg gttgaactga cggatacgct
     4741 gaagcgctct tcgggaaagc gcggacgcga actctttcac ccactgcgcc ttgctcttac
     4801 cggccgcgac agtggaccgg aaatggccag cctggtcgcg cgcctcggca aggagcgaac
     4861 catcaagcgg ctggaggcgg cggcgcgccg ctaagaacct ggttaccaat acttaaacaa
     4921 tcctcttctc tcaggttatg atatcatgta acattgcggt gaaccacttg ggagaggagg
     4981 ttcaagatgt tgcactacgg agtgagtcct gccggtgccg aacggccatc aagcccccag
     5041 gccatgctgc ttattataag cgcccatgtt gcgctcgttg cagcggtcat gagcgcgaag
     5101 atggaactgc caagaagggc agaccaaggg gccccgctca tcaggattcg tgtcgcaccg
     5161 ccgccgccgc ccgagacggc gcgtccgctg cgatcatcaa agtccaccgc agtaacccgc
     5221 ccagtcgagg cccctgtcgc tgcgatcaga ccggcagcgc cagaggcaat gccttctgct
     5281 tcggcgatct atccggcgga tgattcggcc gttagcgttg tcgcaccaac aaccgtgccc
     5341 ccttctccgc cttcgcttcc cgttgagcgg catcaccagg gaccgcgcct gctcactccg
     5401 ctctcagaat tgaagccgcc ctatcccgag tcgaagctct tagccgaaga agaagcgacg
     5461 ctgacgcttc ggctcgagat cgacgatcgg gggcgtgtca tcaaggtcga ttccgtcggt
     5521 tacgccgacc gagctttcct cgacgctgcg cggcggtaca tcattgcgca ttggcgctat
     5581 gatccggcga cggaggggga tcacgccgtc ccggccgaca tcgtcgtcac gctcagattc
     5641 cagcttgacg gctaatggtc tggcggctgg cggtaggctt gcctatcttt gtggaatgtc
     5701 ttggttcccg cggccctcaa gccccattgc tgcgcttcgc gatcttgctg cattcatgcg
     5761 gcatcgcagc cgtgagcaag ttattggcgg tgcactagca ttcctggtta cggcaatcat
     5821 tgtgatcgaa tttctcgtcg acgcaaagat cggaaccgcc ccgccacccc aggttgtcga
     5881 ggtcgaactc tacccggcga accggacgga cgcgcagatt atcgccgacc aaaaaaagga
     5941 tatggcggac aagcaggcag cgcagaagga gcgccagcgc gaattccaga aacttgccaa
     6001 gcagcttcat attgactgac gatcgcaagt ggatggggga ggcgcttcgg cttggggaag
     6061 aggcgcgagg gcagagtgca ccaaatccca acgtaggttg cgtcattgtt gctcccgggg
     6121 gccgagttgc gggaaagggc gcaactgcca agggcggtcg cccgcatgcc gaagcagcag
     6181 cgctggccga ggcagtgacg cgcgctaagg gcgctaccgt ctatgttact ctcgagccct
     6241 gtgctcacga gagtgcgcgt ggtcctgctt gtacggagct attgctcgcg gcaaaaccgg
     6301 cgcgagtcgt tgtggcactc aaggatcctg atccgcgtac ctctggcaag ggcatccagc
     6361 ggcttcgtcg cgcagggatc gaagtctcgc ttggtctctg ccgcagcgcg gcacgcagat
     6421 cacttgcagg atggctcatg cagctgaagc gcggccggcc acggatcacg cttaagttag
     6481 cgctctcgat cgacggcaag atcgcgcttc gttcgggcga atccaaatgg atcaccggcg
     6541 aagaggcgcg ccgccacgtg catctcgagc gggcgcacag cgacatgatc ctcgttggcc
     6601 gcggcacttt catcgccgat cgaccccgcc tcgacgtgcg ccttccggga ctcgaggagc
     6661 gttctccgcg gaaggctctg ttgacgcgcg gttcaatggt tgaaggctgg gaggtccttc
     6721 atagcccgcg agatgttttc gggcttcatg acgtcaatga tctgctgatt gagggggggg
     6781 cggccacagc aactgccttt ctcagcgaga atctcgtaga ccggatcctc atatatcgcg
     6841 ctccgatcat cgtcggcgaa ggcaagtcga gtttcgggta cgtgggactc gacgcaattg
     6901 ccgacgcgca taatcgctgg gcgctggttg atgagcagaa gctcggagtc gaccgtctcg
     6961 aagtttacga gcgcgttgcg gcagactaag tcgcggggcc atgttcacgg ggattgtcac
     7021 cgacgttgga gaagtgatca gcgctgagca gcgcgacgac atgaggctgg tgatcgcgac
     7081 gaactatccg gtcgacagta tcgatctcgg cgcctccatc tcctgctctg gcgtgtgcct
     7141 tacggtcgtc gacaaatcga atcggtggtt cgctgtcgaa gtctctggcg aaacccgatc
     7201 aaaaactgct gccgcgcatt ggcacccagg ggcgcgagtc aatctcgagc gagctctccg
     7261 tcttggcgat gaactcggcg gtcatctcgt taccgggcac gtcgacgccg tcggagaggt
     7321 gctcaatgtc tgcccggaag gagggtcgat gcgcgtcgac ctacgaatac caagagaact
     7381 cgctcgaatg gtcgcgccga aggggtcttt gacggtcgat ggagtgtcgc tgaccgtcaa
     7441 cgaagttcac gacgccggcg acggcaccaa cgtcacgatc aacatcattc cacatactgc
     7501 ggctcagaca actttgggcg aactcagcgc cggccaacag ctgaatgtgg aggtagacgt
     7561 gttggcgcgt tatctagccc gaatgcttgc cacgagccca cattagaaac agatttgttc
     7621 cttcttttca tcacagtcca atgtgataca ccgcgtggat gagcgcttct ctgattgagc
     7681 ggttgaatgc catcatcgaa acgggcgaag ttagccgtgc tggcttggcc cgggcggcgg
     7741 ggcttcatcc caattctctt cgcaaacttg ggcagcccga ctggaatccg
//
LOCUS       DASRBJ010000015         2089 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_153368,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000015 DASRBJ010000000
VERSION     DASRBJ010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153368"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..775)
                     /locus_tag="VE968_00365"
     CDS             complement(<1..775)
                     /locus_tag="VE968_00365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020820605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZU50305.1"
                     /translation="MINSKPETVVVTGGTAGIGRATAREFARHGCNVAVLARGKDGLE
                     ATKRDIEELGGVALAIETDVADWNAVEAAADRVERELGPIDIWINNAFAGIFSRFMDI
                     TPDEYARVTDVTYLGQVNGTRAALKRMLPRDEGSIVLVGSALAYRGIPLQSAYCGAKH
                     AIQGFIDSVRCELLHDKSNVTITMVQMPGVNTPQFDWIRAKLPGQPRPVGKVYQPEVA
                     ARAIYFAAHDGRKEMLVGLPTVEAVWGNKIASSMLDEYLA"
     gene            complement(772..1842)
                     /locus_tag="VE968_00370"
     CDS             complement(772..1842)
                     /locus_tag="VE968_00370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50306.1"
                     /translation="MTRDRSLLLAFVGLLGCAAGLLIAPRDALVAWLVAWLAWGSIPI
                     GALAVLMLVALIPGSWRQLYVRPLTIGTTLMPLVSLAVIPLLVGIALIYPWSDGTSAG
                     TFNGFKGAWLSTTFFIVRTIIYLVVLTLFAWAMLSARADGRAPIAAVGVILYALIGSL
                     IGIDFAESTEPQFHSSIYGLLALTNQWLAGISFAILLGLWSNGGKAPRAASGVLITAI
                     LTWGYMHAMQYIVIWAGDIPREAHWYLERGRNGWVALAWILYGCQGLFAFGALLSPTV
                     RTSRHAMMALAGLTLLMRLVENAWFVLPGINGLTWAVAPLILAASMAMLGCGWLGAVA
                     LRPRVSNDWDESGWARQTRSAP"
     gene            complement(1839..>2089)
                     /locus_tag="VE968_00375"
     CDS             complement(1839..>2089)
                     /locus_tag="VE968_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008599800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50307.1"
                     /translation="GDADGMVVQRGFPRPPDFHEARLVNAPEEHFVDVITHGYGVMYS
                     YADRVPAQDRWAIAAYIRALQRTRAPIGSAKPFQGPER"
BASE COUNT          451 a          643 c          633 g          362 t
ORIGIN      
        1 ctgcgagata ttcatcgagc atgctcgaag cgatcttgtt gccccacacc gcttcgaccg
       61 taggaagccc aacaagcatc tccttgcgac catcatgagc cgcaaaatag atcgcgcgtg
      121 ccgcaacctc gggctgatag actttcccga cggggcgcgg ctgaccgggt agctttgcac
      181 ggatccagtc gaattgcggc gtattgacac ccggcatctg gaccatcgtg attgtcacgt
      241 tcgacttgtc gtggagaagt tcgcagcgaa ctgagtcgat gaaaccctgg atcgcatgtt
      301 tcgcgccgca gtaggcggac tgaagcggga taccgcggta ggcaagcgca gagccgacaa
      361 gcacgatcga gccttcgtcc cgaggcagca tgcgcttgag cgcagcgcgc gtgccgttca
      421 cctggccaag ataggtgaca tccgtgaccc gcgcatattc atccggagtg atgtccatga
      481 atcgcgaaaa gatgccggcg aaagcattgt tgatccatat gtcgatggga ccaagttctc
      541 gttcaacccg atcggcagcg gcttctacgg cgttccagtc cgcgacgtcc gtctcaatcg
      601 caagcgcaac gccgccaagc tcctcgatgt cgcgcttggt cgcttcgaga ccgtccttgc
      661 ctcgtgcgag aacggcaaca ttacagccgt gtcgagcgaa ctcgcgcgcc gttgcgcggc
      721 cgatgcctgc cgtgccgcca gtgacgacca cggtttcggg tttgctgtta atcatggtgc
      781 actcctcgtc tgtcgtgccc acccgctctc atcccagtca ttgcttactc gcggccgaag
      841 cgcgaccgcg ccaagccagc cacagccaag cattgccatc gacgccgcaa ggatcagcgg
      901 cgcgaccgcc cacgtcagtc cattgatacc gggaagcacg aaccaggcgt tttcgacgag
      961 ccgcatcaac agcgtcaggc cagcaagagc catcatcgcg tggcggctcg tccgaacggt
     1021 gggcgacagc agtgcgccaa aggcgaaaag gccctgacat ccgtaaagaa tccaggctag
     1081 cgcaacccag ccgttccgtc cgcgctcgag gtaccaatgt gcttcacgcg ggatgtcgcc
     1141 ggcccaaatg acgatgtact gcatcgcgtg catgtagccc cacgtcagga tcgcggtgat
     1201 gaggacgccc gaggccgctc gcggagcttt tccgccattg ctccacaggc ccagaagaat
     1261 cgcgaaggat atcccggcga gccactggtt tgtgagtgcg agcaggccat agatggaaga
     1321 atggaattgc ggctcggttg attccgcaaa atcgatgccg atgagcgacc cgatgagtgc
     1381 gtagaggatg actccaaccg cagcgatcgg cgcacggcca tcggctcttg cgctaagcat
     1441 tgcccaggcg aacagcgtca ggacgacaag gtagatgatc gtgcgcacga tgaagaacgt
     1501 cgtcgagagc cacgcgccct tgaagccgtt gaacgttccg gcgctcgttc cgtccgacca
     1561 gggatagatt aaggctatgc cgacgaggag cggaatgacg gcaaggctta cgagcggcat
     1621 cagggtggtc ccgatcgtaa gtggacgaac gtaaagttga cgccagcttc cgggtatcag
     1681 cgcgacgagc atcagtacgg caagtgcacc gattgggatc gagccccacg caagccacgc
     1741 gacaagccag gcaaccagcg cgtcacgcgg cgctatcaac aagcctgctg cacagccaag
     1801 caacccgacg aacgcaagca ggagcgaacg gtcacgagtc atcgttcagg cccctggaac
     1861 ggtttggccg agccaatcgg cgcgcgggta cgctgaagtg ctcgaatata ggcagcaatt
     1921 gcccagcgat cctgcgctgg aacccggtcg gcgtagctat acatgacccc gtagccatgc
     1981 gtgatgacgt cgacgaaatg ctcttcgggc gcattgacga ggcgcgcttc gtggaagtcg
     2041 ggcggccgcg ggaagccgcg ttggaccacc attccatcgg catcgccgg
//
LOCUS       DASRBJ010000016         2606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_661878,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000016 DASRBJ010000000
VERSION     DASRBJ010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2606
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_661878"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..216
                     /locus_tag="VE968_00380"
     CDS             <1..216
                     /locus_tag="VE968_00380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZU50308.1"
                     /translation="ASGIGDFRYIMKWNEYNSPLRRNVTIDDVGGAGLYLLSDLASGV
                     TGEIHHVDAGYNVVGMKAEDAPDISVV"
     gene            216..485
                     /locus_tag="VE968_00385"
     CDS             216..485
                     /locus_tag="VE968_00385"
                     /inference="COORDINATES: protein motif:HMM:NF012911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HZU50309.1"
                     /translation="MDTCRIRARGLVQGVYFRAWTRDQARELGVSGWVRNCSDGSVEA
                     CVQGDPSKVQELVRRVHCGPPRALVDEVLIETVDSDPAQGFRIER"
     gene            complement(489..1778)
                     /locus_tag="VE968_00390"
     CDS             complement(489..1778)
                     /locus_tag="VE968_00390"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007685463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HZU50310.1"
                     /translation="MGNVTVIGAQWGDEGKGKIVDWLASRADMVVRFQGGHNAGHTLV
                     VGNQTYKLSLLPSGIVRGTPSIIGNGVVLDPWALKAEVERIRGLGVEVSPDILMIAET
                     CPLILPIHRDLDALREDASGLGKIGTTRRGIGPAYEDKVGRRAIRVCDLAHLDELGPQ
                     LDRLCAHHDALRAGFGEPPIDRERLKRDLAEIADFVLEFAKPVWRDLDEGRLRGRRIL
                     FEGAQGVLLDVDHGTYPFVTSSNTVAGTTGSGSGMGPSAAGFVLGIAKAYTTRVGSGP
                     FPTEQDNDVGQKLGERGHEFGTVTGRKRRCGWFDAVLVRQAVAVSGITGLALTKLDVL
                     DGFETVRICIGYRIDGQEFDYLPPHAADQARVEPVYEEIEGWPGSTRGARSWAELPAR
                     AVKYVRRIEELVRCPVALVSTSPERDDTILVRDPFAG"
     gene            1950..2240
                     /locus_tag="VE968_00395"
     CDS             1950..2240
                     /locus_tag="VE968_00395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50311.1"
                     /translation="MKTMTVVAIALAIGALGACKKSPNEQAAQNIEANYSNAAENVEA
                     TTSNAADQIQANGENAASEVKAAGKNEASEIKNEGKEKANEVRNGAATNNAQ"
     gene            complement(2244..2477)
                     /locus_tag="VE968_00400"
     CDS             complement(2244..2477)
                     /locus_tag="VE968_00400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50312.1"
                     /translation="MTPREALGKAFERNAAKRSLSVAVLVGTLLNAINQGPEMISGHW
                     PIVWKLVLTYFVPFAVASYASYAAYRSTSPNEA"
BASE COUNT          552 a          778 c          804 g          472 t
ORIGIN      
        1 gcgagcggta tcggcgactt ccgctacatc atgaagtgga acgaatataa cagcccgctg
       61 cgacgaaacg tcacgatcga cgatgttggc ggggctgggc tttatcttct aagcgatctg
      121 gcctccggcg tgaccggaga aattcaccac gtcgacgctg gctacaatgt cgtggggatg
      181 aaggctgagg acgcacccga tatatcggtt gtctgatgga tacgtgccga attcgagcgc
      241 gaggactcgt tcaaggtgtc tacttccgcg cgtggacaag ggatcaagct cgcgaactcg
      301 gtgtgagcgg ctgggtacgc aactgcagcg atggttcagt cgaggcttgc gtccaaggcg
      361 accccagcaa agtgcaggag ctggttcgtc gcgttcattg cgggccgccg agggcgctgg
      421 tcgatgaagt gctcatcgaa acagtcgact ccgaccccgc ccaagggttc aggatcgagc
      481 gatgatcttc agccggcaaa ggggtcgcgg acaagaatag tatcgtcgcg ctcgggcgag
      541 gtgctgacca gtgcgactgg gcagcggacg agttcttcga tccgccggac atatttcacg
      601 gcgcgtgccg gcagctcagc ccaactgcga gcgccacgcg tcgaaccggg ccaaccttca
      661 atctcttcgt agacgggttc gacccgcgcc tggtccgctg catgcggcgg caggtagtcg
      721 aattcctggc cgtcgatccg gtagccgatg cagatcctca ccgtttcgaa tccgtcgaga
      781 acgtcgagct tggtcagcgc aagaccagtg atgccgctca ccgcaacagc ttgtcgcacc
      841 aacactgcgt cgaaccagcc gcagcggcgt tttctgccgg tcacggtccc gaattcgtgg
      901 ccgcgttcgc cgagcttctg tcccacgtca ttgtcctgtt cagtcgggaa tggacccgat
      961 ccgacgcggg tcgtgtacgc tttggctatt ccgagtacga aaccagcagc cgaagggccc
     1021 attccgctcc ctgaaccggt cgttccggca accgtgtttg acgaggtcac aaacggatag
     1081 gtgccatggt ccacgtcgag caggacgccc tgcgcgcctt cgaacaggat ccgcctgccg
     1141 cgcaggcgac cctcgtcgag atcacgccag actggctttg caaattcaag aacgaaatcg
     1201 gcgatctcgg caagatctct cttgagccgc tcgcgatcaa tgggtggctc accaaagcct
     1261 gcgcgaagcg cgtcgtggtg agcgcagagg cggtcgagtt gcggtccaag ctcgtcaagg
     1321 tgagcaagat cgcaaacccg gattgctcgg cgaccgacct tgtcctcgta cgcgggaccg
     1381 atgccgcggc gcgttgttcc aatctttccg aggccagacg catcttcgcg aagcgcgtcg
     1441 aggtcgcggt ggatggggag gatcagcggg caggtctcgg cgatcatcag gatatcgggg
     1501 cttacctcga caccaagacc gcgaattcgc tcgacttcgg ccttcaatgc ccatggatca
     1561 aggaccacgc cattgccgat gatcgaggga gtcccgcgca cgatccctga gggcaaaagc
     1621 gacagcttgt aagtctggtt gccgacgacc aaggtgtgac cggcgttgtg gccgccctgg
     1681 aaacgaacga ccatgtcggc acggctcgcg agccagtcga caatctttcc cttgccttcg
     1741 tcgccccatt gagcgccgat gaccgtcacg tttcccactt gcgttccctg aatctgcgat
     1801 gcttgggcgc tcctaggatg cgaggcgctg tgcgtccacc cggcccggtg atcgttgcaa
     1861 tgacggaaca gaaaacggct gctaagcgta atgtcgcgcg gcgtgcttag cggcgcgcag
     1921 gcaacagatt aggacagggg aaagctgcca tgaagacgat gactgtagtt gcaatcgcgc
     1981 tcgcgatcgg tgcacttggt gcttgcaaga agagcccgaa cgagcaggct gcgcagaaca
     2041 tcgaggcaaa ttacagcaat gccgcggaaa atgtcgaagc gacgacgtca aacgccgcag
     2101 accagatcca ggccaacggc gagaatgccg catccgaagt caaggccgcg ggcaagaatg
     2161 aagcgtccga gatcaagaac gaaggcaagg aaaaggcaaa cgaggttcgc aacggcgcgg
     2221 ccacgaacaa cgcccaataa gctctacgct tcgttcggcg aagtgcttcg atacgcagcg
     2281 taacttgcgt agctcgccac ggcgaagggc acgaaatagg tcaggactag cttccagacg
     2341 attggccagt gaccggagat catctccggt ccctggttga ttgcattaag cagcgtgcca
     2401 acaagcaccg cgacgctgag cgagcgcttc gccgcgttcc tttcaaacgc ctttccgagt
     2461 gcctcgcgcg gcgtcatcgt cagaaactca gcggaacgac ttcgcgcacg ccaggaagat
     2521 cacgaagctg gtgcgcgaca tcgccggaga tcggatcgtc gacggaaacg agcgcgattg
     2581 cttcaccgcc ttccttgcgc cgacca
//
LOCUS       DASRBJ010000017         8318 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_713180,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000017 DASRBJ010000000
VERSION     DASRBJ010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8318
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_713180"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..451
                     /locus_tag="VE968_00405"
     CDS             <1..451
                     /locus_tag="VE968_00405"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HZU50313.1"
                     /translation="PPSPAVPSQMVERHVPPFDLPAALPTKPGLKSPDLATGHPRMVN
                     IFASWCVPCASEAPVLNQLKARGIKIDAIAVRDTPDAITAFLAEYGDPYEAIGSDARS
                     NVQMDLGSSGVPETFIVDGKGVIRRQYIGPLSSANIPEITRQMAQLQ"
     gene            448..855
                     /locus_tag="VE968_00410"
     CDS             448..855
                     /locus_tag="VE968_00410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007685764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein"
                     /protein_id="HZU50314.1"
                     /translation="MRTIIAFLLVLLAAPLLADSNLPPAYWANRQLPDPQQEAAAEAL
                     MSELRCLVCQGQSIADSDAELAGDMRDLVRRRIAAGERPSAIRSWLIQRYGTWISYRP
                     TDEPAAWPLWIAPLLLLLAGAWLLRNRIRMKRD"
     gene            856..1500
                     /locus_tag="VE968_00415"
     CDS             856..1500
                     /locus_tag="VE968_00415"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZU50315.1"
                     /translation="MGWGSLLLLIALSLGLLRLLGVRGGLLTASAAALLIGASGYALQ
                     GSPDLPAARAVSGEGHDVFPLTDARHAFYGYFTPAESWLRMSEALERDGKSEDAVGIL
                     ENAVRRYPGDPQLWIGLGNALVDHARGLTPPAELAYKRAEEAAPGHPGAAFFYGLALA
                     RSGDRDGALALWSQILKTAPRDASWRPLVEHGVEALGGSATAVPAKPDHSQQRH"
     gene            complement(1562..1786)
                     /locus_tag="VE968_00420"
     CDS             complement(1562..1786)
                     /locus_tag="VE968_00420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011415115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3072 domain-containing protein"
                     /protein_id="HZU50316.1"
                     /translation="MSSEVSEDPKQNPTGNAVKNPDSWVTGDEPMTGAQASYLQTLSE
                     EAHEEFDPDLTKADASKKIDELQQRTGRGE"
     gene            complement(1849..2949)
                     /gene="ald"
                     /locus_tag="VE968_00425"
     CDS             complement(1849..2949)
                     /gene="ald"
                     /locus_tag="VE968_00425"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010185973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000286 - alanine dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006522 - alanine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HZU50317.1"
                     /translation="MRIGVPKEIKVHEYRVGLTPASVAELAAHGHEIYVEAKAGNGID
                     CPDTAYEKAGAKILPDAKSVFDVADMIVKVKEPQPQEIALLKPHQILFTYLHLAADKP
                     QAEGLMKSGATCIAYETVTGRNGSLPLLKPMSEVAGRMSIQVGAHYLEKEQGGRGVLL
                     GGVPGVAPAKVAILGGGVAGVNAAQMATGMRADVTIYDINNDRLAELDMFFSSQIKTA
                     YASRSAIANAVREAELVIGAVLVPGAAAPKLVTREMLKTMKRGSVLVDIAIDQGGCFE
                     TSHATTHADPVYEVDGIIHYCVANMPGAVARTSAFALNNATLPFALKIANLGAEQAMR
                     EDPNLANGLNVSGGKIRHQAVAEALDLQYEAA"
     gene            3127..5067
                     /locus_tag="VE968_00430"
     CDS             3127..5067
                     /locus_tag="VE968_00430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter Kup"
                     /protein_id="HZU50318.1"
                     /translation="MNITATGGAEAEAPQDNAHGHAHGPLYKLVVGAIGIVYGDIGTS
                     PIYAFRETFAGHHVLRVDQVHIFGVLSLIFWSMMIIVTLKYVTIIMRADNKGEGGSLA
                     LLALINRTLSGKKKWTSGVVMLGVFATALFYGDSMITPAVTVLGAVEGLETVNAGLAP
                     FVIPIALAILIGLFAIQARGTARVGLMFGPVMIIYFLALAVLGIAHILDQPYVLVAMI
                     NPANAVYFFTSDFTRAFVALGSVVLAVTGAEALYADMGHFGRKPIRVSWLYFVLPALL
                     LNYLGQGAMILAANRATAAAKIKDPFFYLAPDTLRLPLVLLATAASIIASQAVISGAF
                     SVTQQAIQLGFVPRLRITHTSESAAGQIYIPIVNWALMIMVLLLVVSFRSSSNLTGAY
                     GIAVVGAMLIDSVLISVVLRQMWNWNRFAVAGLLALFFLVDFSYLSANLLKIPAGGWF
                     PLLVGGIAFTLLTTWAKGRQLMISRMNEASLPMEIFIKSAAPSAARVPGTAVFMTSSS
                     SGVPHALLHNLKHNKVLHERVILLTVRIEDVPYVRAEKRLETKDYGSGFYRVVLRYGF
                     MEEIDVPAALAQLKDIGSQCRMMDTSFFLARQTLLASSRPGMAIWREKLFAWMLRNAE
                     SAMEFFKLPTNRVVELGSQVEI"
     gene            5099..5662
                     /locus_tag="VE968_00435"
     CDS             5099..5662
                     /locus_tag="VE968_00435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="PRC-barrel domain containing protein"
                     /protein_id="HZU50319.1"
                     /translation="MADTISWVATVATIIAASMTAANLGARITGYGFVVFTIGALCWI
                     NVGASTGQPALTWTNVVLTILDVFGIWRWLGREAKVEEGARAASEASEKLPGETLFPI
                     SLLTRAPVRNRESELGRCIDAMAGCSTGRVHYVVVSQGGVGGVGETLRRLAWSSATIV
                     DQHLVTDLDSGAFGELEQLARDEWPAR"
     gene            5647..6153
                     /locus_tag="VE968_00440"
     CDS             5647..6153
                     /locus_tag="VE968_00440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-5' RNA ligase family protein"
                     /protein_id="HZU50320.1"
                     /translation="MAGALIITAEIAPPDLAWLDRLRRAHYPAARNHLPAHLTMFHAL
                     PPSAEGEARRTLSRAALEPRPAAAIEGIMDLGGGVAFRVASNDLDDLRARLADTFHGI
                     LSAQDSSGWRPHVTIQNKVAPKVARALASELRRNFRPVPLAVSGLGLHRYLGEEWEKV
                     ATYAFRGH"
     gene            complement(6150..6575)
                     /locus_tag="VE968_00445"
     CDS             complement(6150..6575)
                     /locus_tag="VE968_00445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008603566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3775 domain-containing protein"
                     /protein_id="HZU50321.1"
                     /translation="MDPLTPLDTLCRIILRAREYEAQTASDYDGGEDPDNVDDEQEGT
                     LSVLEDDINDSVEEELQAAFEDLGEDQLAEVIAFTWVGQGTYEAADWDEAMAEAQDLV
                     NDGTDAAIQELMEQPMLASVLDAGLAAFDLSCEGIGEVS"
     gene            6704..6780
                     /locus_tag="VE968_00450"
     tRNA            6704..6780
                     /locus_tag="VE968_00450"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6738..6740,aa:Met,seq:cat)
     gene            6998..7519
                     /locus_tag="VE968_00455"
     CDS             6998..7519
                     /locus_tag="VE968_00455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HZU50322.1"
                     /translation="MQFSIRTFMSVALLFSSPLLTGASAARADFNQRLLAAHNVERSA
                     AGVPPLAWSDELEAEARAWANTLAATGRFEHSPDEVASDLEGENLWAGTPHAYSPEAM
                     VGLWSSEKKNYRPGIFPNNSLSGEIDDVGHYTQLIWRSSRKVGCATAIGKSEEYLVCR
                     YSRAGNVYGERPA"
     gene            complement(7498..>8318)
                     /locus_tag="VE968_00460"
     CDS             complement(7498..>8318)
                     /locus_tag="VE968_00460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HZU50323.1"
                     /translation="FCDTVLKRMNIEVRYYAPLLDDGIRALIGTNTRAILLESPGSLT
                     MEVQDVPGICRIARERGLVTLLDNTWATPLFFPAIASGVDIAILAGTKYVGGHADVML
                     GSVTTTSRYFEQIQTFTWDLGYAVSPDDAWLGSRGLRTMSLRLRQHEEGAIMIAQWLR
                     TRPEIGLILHPALPECPGHYHWTRDFKGSSGLFAFELKGGKDHRTRFINALKLFGIGY
                     SWGGYESLVLPVDPYRTVSQPPAANLVRLHIGLEDAEDLIADLAQALDQAGRSP"
BASE COUNT         1536 a         2517 c         2461 g         1804 t
ORIGIN      
        1 gccgccaagc ccggcagtcc catcgcaaat ggtcgagcgg cacgtcccgc cgttcgatct
       61 tccggcggcg cttccgacga agcccggtct caaatcccct gatctcgcca ctggccaccc
      121 ccgaatggtc aatatcttcg ccagctggtg cgtgccgtgc gcgagcgagg cacctgtgct
      181 caaccaactg aaagcccggg gtatcaagat tgatgccatt gccgtccgcg acacaccgga
      241 cgcgatcacg gcgttccttg ctgaatatgg cgatccttat gaagcgattg gaagcgacgc
      301 tcgcagcaat gtccagatgg accttggttc ttcgggtgtc cccgaaactt tcattgtcga
      361 cggcaagggt gtgatccggc gccaatatat cggaccgctg agcagcgcga acattcccga
      421 aatcacaagg caaatggcgc agctgcagtg agaacgatca tcgccttctt gctcgtgctg
      481 ctcgccgcgc cgttgctggc ggacagcaac ctgccgcctg cctactgggc caaccgccaa
      541 ttgccggatc cgcaacagga ggcggcggca gaggcgctca tgagcgagct gcgctgcctc
      601 gtctgccagg gccagtcgat tgccgattcc gacgcggaac ttgccggcga catgcgcgac
      661 ctcgtgcgac ggcggattgc ggcaggcgaa agaccaagcg ctattcgatc gtggctaatc
      721 cagcgatacg gaacgtggat cagctatcgg ccgacggatg aaccagcggc ctggccgctt
      781 tggatcgctc cacttctctt gctcctagcc ggcgcctggc tgctccgaaa tcgaatccgg
      841 atgaagaggg actagatggg ctggggttcg ctcttgcttc ttatcgcatt gagcctcggg
      901 ctcctccggc tgcttggcgt ccggggtggg ttgctgaccg cgagtgctgc agccttgctc
      961 atcggtgcat cggggtacgc cttgcagggt agcccggatc ttcccgctgc tcgggcggta
     1021 agcggcgagg gacatgacgt ctttccgctt accgacgctc ggcacgcctt ctacggctat
     1081 ttcacgccgg cggagagctg gcttcggatg tccgaagcgc tggaacgcga cggcaagagc
     1141 gaagacgcgg tcggcattct ggaaaatgcc gttcggcggt acccggggga cccccagctc
     1201 tggattggcc ttggcaatgc cctggtcgat catgcacgcg gcttaacgcc gccggcggag
     1261 ctcgcgtaca agcgcgccga ggaagccgcg ccgggtcacc cgggggctgc cttcttttac
     1321 ggcctcgccc tggctcgctc cggcgatcga gacggcgctc ttgccctctg gagccagatc
     1381 ctcaagaccg caccgcgcga tgcgtcctgg cgaccgctcg tcgaacatgg ggtcgaagcg
     1441 cttggtggtt cagcgacagc cgttccggca aagcccgacc actcgcagca gcgccactga
     1501 acggcgtttg cggggatata ctcatgagct tggttggtcg ctgaacggca gcagtcccgc
     1561 actactcgcc gcgaccggtc ctttgctgga gctcgtcgat tttcttggaa gcatcggcct
     1621 tggtgagatc cgggtcgaac tcctcatgag cttcttcgct tagggtctgc aggtaggagg
     1681 cttgcgctcc tgtcatcggt tcatcgccgg tgacccagct atcgggattc ttcacggcat
     1741 tgccggttgg attctgtttg ggatcttccg aaacttcgct cgacattggt gtgccttgtt
     1801 gatcagaact atcggtcaca ccaacgtctt cgttcttgct tcgttcccct aggctgcttc
     1861 gtattggaga tcgagtgcct cggcgaccgc ctggtggcgg atcttgccac ccgacacatt
     1921 cagcccattc gcgagattgg ggtcctcgcg catcgcttgt tcggcgccga gattggcaat
     1981 cttgagagcg aacggcaggg ttgcattgtt gagcgcgaac gcgctcgtgc gagcaacagc
     2041 tccgggcatg tttgcaacgc aataatggat gatcccgtct acctcataga cggggtcagc
     2101 gtgcgtcgtt gcgtgcgagg tttcaaagca gccaccttga tcgatcgcaa tgtcgaccaa
     2161 caccgagcct cgcttcatcg tcttcagcat ttcgcgcgtt acaagcttag gtgcggctgc
     2221 gcccggaacc aacactgctc cgatgacgag ctccgcttcg cgcacggcat ttgcgatcgc
     2281 cgaacgcgat gcataggcag tcttgatctg gctcgagaag aacatgtcca gttccgcgag
     2341 cctgtcgttg ttgatgtcat agatagtgac gtccgcgcgc attccggttg ccatctgtgc
     2401 ggcgttgacc ccggcgacgc cgccgccgag gattgcgacc tttgccggcg cgacaccggg
     2461 cacaccgccg agcagtacgc cgcgtccacc ctgctccttt tcaagataat gcgcgccgac
     2521 ctggatcgac atccggcccg cgacctcgct catcggcttc aacaatggca gcgagccgtt
     2581 gcgtcccgtg acagtctcat acgcgatgca ggtcgcacca gacttcatca ggccttcggc
     2641 ctgcggcttg tcagcggcaa ggtggagata ggtgaagaga atctggtgag gcttcagaag
     2701 cgcgatctct tgcggctgcg gttccttaac cttcacgatc atgtcggcaa catcgaacac
     2761 ggatttcgca tcggggagga tctttgcccc ggccttctcg taggccgtgt cggggcaatc
     2821 gattccgttt ccggccttgg cctcaacgta aatctcgtgc ccatgggcgg cgagttcggc
     2881 aaccgaagca ggcgtcaggc ccacacgata ttcgtgaacc ttgatctctt ttggcacccc
     2941 aatgcgcatt taaacgttcg ctccgttcat gattgtagcg cgggcctata gacgggcttt
     3001 tcgccgctgt cctgtccgat tgcggggtcg caacggcagt gctaggggag cgcgcccgtg
     3061 accgacgatc aggcttacgg cacaggggat gcgagttcgc ggtctgtcga gtcagaactt
     3121 cacaacatga acattaccgc gacaggtggc gccgaagccg aagcgccgca agacaatgcg
     3181 catggtcatg cgcatggacc attgtacaag ctcgtcgtcg gcgcgatcgg catcgtgtac
     3241 ggcgacatcg gaacgtcgcc catttacgct ttccgggaga cgttcgccgg ccaccacgtc
     3301 cttcgcgttg accaggtcca catcttcggt gtgcttagcc tcatcttctg gtcaatgatg
     3361 atcatcgtaa cgctcaaata tgtcacgatc atcatgcgcg ccgacaacaa gggtgagggg
     3421 ggaagcctcg cattgcttgc cctcatcaac cgcacgctta gcggaaagaa gaagtggaca
     3481 agcggagtcg tcatgctcgg cgtattcgcg acggcgcttt tttatgggga ctcgatgatc
     3541 actccggcgg tcaccgtgct tggcgccgtc gaaggattgg agacagtgaa cgccgggctc
     3601 gcgccgttcg tcatacccat cgcacttgcc atcctaatcg gcctctttgc catccaagcg
     3661 cgcggcacgg cgcgcgtcgg actgatgttc ggccccgtga tgattattta ttttcttgca
     3721 cttgccgtcc tcggaatcgc gcacattctc gatcagccat acgtgcttgt ggccatgatc
     3781 aatccagcga acgcggtgta cttcttcacg tcggacttca cgcgggcctt cgttgcgctt
     3841 ggctccgtag tcctcgcggt taccggtgcc gaggcactct atgccgacat gggtcacttc
     3901 ggccgtaagc caatccgcgt atcgtggctt tatttcgttt tgccagcgct tcttctcaac
     3961 tatcttggcc agggggcgat gatcctcgcg gccaacaggg cgacggctgc tgccaagatc
     4021 aaggatccct ttttctatct tgctcccgat accttgcgcc tgccgttggt actacttgcg
     4081 accgcagcgt cgatcatcgc cagccaggcg gtgatttcag gagccttctc ggtaacgcag
     4141 caagcgatcc agttgggctt cgttccgcgc ctcaggatca cgcacaccag cgagagcgcc
     4201 gctgggcaga tctatatccc gattgtgaac tgggcgctga tgatcatggt cttgttgctg
     4261 gtcgtgtcat tccgcagctc gtcgaacctg actggagcct acggaatagc ggtcgtcgga
     4321 gcgatgctga tcgacagcgt tctaatctcg gtcgttctgc gccaaatgtg gaactggaat
     4381 cggttcgcgg tggccgggct gttggctctc ttcttcctgg tcgatttttc ctacctctcc
     4441 gccaaccttc tcaagatccc ggccggcggc tggttcccgc ttctcgttgg cgggatcgcc
     4501 ttcacgctgc tgactacgtg ggcaaagggg cggcagctca tgatcagtcg aatgaacgag
     4561 gcgagcctgc cgatggagat cttcatcaag tcggcggcgc cgagtgctgc gcgtgtgccg
     4621 ggcactgccg tgttcatgac gagctcgtcg agcggtgtgc cgcacgcgct ccttcataac
     4681 ctcaagcaca acaaggtgct ccacgagcgg gtcatattgt tgaccgtccg cattgaggac
     4741 gtgccttatg tccgagcaga aaaacgcctc gaaacaaaag attacggctc gggcttctat
     4801 cgcgtcgttc ttcgttacgg ctttatggaa gagatcgatg tcccagctgc cctcgcgcag
     4861 ctcaaggata tcggttcgca gtgccgaatg atggacacga gcttcttcct cgcacgccag
     4921 accctgcttg cctcgtcgcg cccgggaatg gcgatctggc gtgagaagct cttcgcctgg
     4981 atgctacgaa acgcggaaag cgccatggaa tttttcaagc ttccaacgaa ccgggtggtg
     5041 gagcttggaa gccaggttga aatctgaaca atccgctgcg tccgtgcatt gcgacgtgat
     5101 ggctgatacg atttcatggg tcgcaactgt cgcaaccatc attgcggcgt cgatgaccgc
     5161 cgcaaatctc ggtgcacgaa ttaccggcta cggttttgtc gttttcacga ttggagccct
     5221 ttgctggatt aacgtcggtg caagcacggg ccagcctgcg ctgacgtgga caaacgtcgt
     5281 tcttacaatc cttgacgtgt tcggcatctg gcgatggctt ggacgagagg ccaaggtgga
     5341 agaaggagcg cgcgccgcct cggaagcgag cgagaaactg cccggtgaaa cgctctttcc
     5401 gatttcccta ctgacgcggg caccggttcg gaaccgcgaa agtgagctcg gcagatgcat
     5461 tgacgccatg gctggatgtt cgaccgggcg cgtccactat gttgtcgtgt cgcaaggtgg
     5521 cgttgggggg gtgggcgaaa cgctccgccg actcgcttgg tcttccgcga cgatcgttga
     5581 tcagcacctt gtcacggatc ttgattcggg cgcattcggc gagcttgaac agcttgcacg
     5641 ggacgagtgg ccggcgcgct aatcatcacg gcagaaattg caccgcccga tcttgcttgg
     5701 ctcgatcggc tccgccgagc gcattatccg gccgcccgca accatcttcc tgcgcatctt
     5761 acgatgttcc atgctttgcc gccaagcgcg gaaggggaag cacgccgcac cctttcgcgt
     5821 gccgctctgg agccgcgccc tgcggccgcg atagaaggta tcatggacct cggaggggga
     5881 gtcgcgtttc gtgtcgcctc aaacgatctt gacgatcttc gtgcccggtt ggccgatact
     5941 tttcacggga ttctgagcgc gcaggattct tccggttggc gtcctcacgt caccattcag
     6001 aacaaagtgg cgccgaaggt tgcaagagcg cttgcttccg agctcaggcg caactttcgt
     6061 ccggttccac tcgccgtcag cggcctaggg cttcatcgct atctcggcga agaatgggaa
     6121 aaggtcgcga cctacgcatt ccgcggccac taggaaactt cgccgatacc ttcgcagcta
     6181 agatcaaacg cggcgagtcc tgcatccagc accgaggcaa gcattggctg ctccatcagt
     6241 tcctggatcg cggcgtcggt gccatcattc accaggtctt gcgcttccgc catggcttca
     6301 tcccaatcgg cagcctcgta agtcccttgg ccgacccagg tgaaggcgat cacttcggcg
     6361 agttggtcct cgccgagatc ttcgaacgcg gcctgaagtt cttcctcgac gctgtcgttt
     6421 atgtcgtcct cgagcaccga caaggtgcct tcctgctcgt catcgacatt gtccgggtct
     6481 tcaccgccgt catagtcgct ggcggtctgc gcttcatatt cacgtgccct caggataatt
     6541 cggcagaggg tatcgagggg ggtcaagggg tccatcaagc tctcttcctg ttgccgcgtt
     6601 caacgagagc agccgtaagc ggttcctcgc gttgaccgcc tcaaatgaca cacctatatg
     6661 ccgcgcctct ggcgctcacg acgagcgtct ttaccgaaga cggggcggag tagctcagct
     6721 ggttagagca gcggaatcat aatccgcgtg tcgggggttc aagtccctcc tccgctacca
     6781 tccctgacgg gtccgttccg actacatggg tgacaatttc gcgccgacgc cgccaaggcg
     6841 agctgcgttg ccccgcccgc gacgccattc cttgaggttc aagccctgag ggttcgttcc
     6901 ggtcaatggg cgttttggtg aacagtccgc taaccatctt cccttaccgg ctaggaaccc
     6961 tgttttcggt acggacgcac tcggaagagg cgcgcccttg cagttctcaa ttcgcacatt
     7021 catgtcggtt gccttgctgt tcagcagtcc gctgctgaca ggggcgagcg cagcgcgtgc
     7081 cgatttcaac cagcgtcttc ttgccgcgca caacgtcgag cgttcggccg ctggcgttcc
     7141 gcctctcgcg tggagcgatg agctcgaagc tgaagcgcga gcctgggcga acacgctcgc
     7201 tgcaacgggg cggttcgagc attcgccgga cgaagtcgct agcgacctcg aaggcgaaaa
     7261 cctctgggct ggaacgcccc acgcctattc gcccgaggcg atggtgggac tttggagttc
     7321 cgagaagaaa aactatcgac ctgggatctt ccccaacaac agcctgtcag gcgagatcga
     7381 tgacgtcggc cattacaccc agcttatctg gcgcagcagc aggaaggttg gatgcgcgac
     7441 ggccattggc aagagcgagg aatatctggt ttgccgatat agtcgtgctg ggaacgtcta
     7501 cggcgaacga ccggcctgat cgagcgcttg agccaagtcg gcgataagat cctctgcatc
     7561 ctcaagacca atatgtaagc gaacgaggtt cgcagcaggc ggctgtgata ccgttcgata
     7621 agggtcaacg gggaggacaa ggctctcata gccgccccag ctatagccga ttccgaaaag
     7681 cttcagcgca ttgataaacc tggttctatg atccttgcct cccttgagct caaaggcgaa
     7741 gagcccggac gatcctttga aatccctcgt ccaatgataa tgccccggac attcgggcag
     7801 cgcgggatga aggatcaacc cgatctcggg tcttgttcgg agccactggg cgatcatgat
     7861 cgcgccttct tcgtgctgcc gcaggcggag cgacatggtt cgtagtccac gcgacccaag
     7921 ccacgcgtcg tcgggcgaca ctgcgtatcc aagatcccac gtaaaagtct gtatctgctc
     7981 gaaataacgg cttgtcgtag tgactgaacc gagcattaca tcggcgtggc ctccgacata
     8041 ttttgtcccg gcaaggatcg cgatgtccac tcccgaagcg attgctggaa aaaacagcgg
     8101 ggtagcccag gtattgtcga gcaaggtgac tagtccacgt tctcgcgcga tccggcaaat
     8161 gcctggcacg tcttgcactt ccatcgtcag tgaacccgga ctctcaagca ggattgcgcg
     8221 cgtgttcgtt ccgatgagcg cgcgaatgcc atcgtcgagg agaggggcgt aatagcgcac
     8281 ctcgatgttc atgcgcttta gaacggtatc gcaaaact
//
LOCUS       DASRBJ010000018         9146 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_2539,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000018 DASRBJ010000000
VERSION     DASRBJ010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 9146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9146
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2539"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..724)
                     /locus_tag="VE968_00465"
     CDS             complement(<1..724)
                     /locus_tag="VE968_00465"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HZU50324.1"
                     /translation="MKHVFAILSLIALACCSRPVMRSNDIVFVSNEAGHVTVLDGASG
                     KIEGQLATGPRPRGMAFSPDKRIFYVAASNANRIEAWDVHSRKLLRLYGAGTDPERFA
                     ISPDGGTAYIANEDHSAVSFLDLKTGKIFREVKVGPEPEGVGVSPDGKLVVATSETAN
                     LAHFIDASTGKLIDSVPVGSRPRFVLFLHGGRTVWVSSEQRGTISVFDAATRQITNTI
                     DLTETFDIEQPVQAIEMRVTKDE"
     gene            952..1491
                     /locus_tag="VE968_00470"
     CDS             952..1491
                     /locus_tag="VE968_00470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50325.1"
                     /translation="MVSSRLFAAALAATAPFAPAAAQDPNDLAKQIVNDPSAPDVSGA
                     KATLVNDPKAQGGKALRIDVPRKGSNPWDSTVGGTVKKAISKGDRLVLIFSARLQKGE
                     NGATTAVLPYNAVQLATAPYTTVISGSGAIGPDWKDFQVTGISDANYAPGALKVTIQL
                     ATAKQTVDFGPIVLLDRGK"
     gene            complement(1796..1957)
                     /locus_tag="VE968_00475"
     CDS             complement(1796..1957)
                     /locus_tag="VE968_00475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50326.1"
                     /translation="MGGDLGYYERRMEQELRAAAATECKNSRRVHEEMAELYAKMVQV
                     LSSAANDRE"
     gene            complement(2324..4702)
                     /gene="pnp"
                     /locus_tag="VE968_00480"
     CDS             complement(2324..4702)
                     /gene="pnp"
                     /locus_tag="VE968_00480"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HZU50327.1"
                     /translation="MFDTKTVEIEWGGKTLKLETGRIARQADGAVLATLGETVVLCAV
                     TAAKSVKPGQDFFPLTVHYQEKFSAAGRIPGGFFKRERGATEKETLTSRLIDRPIRPL
                     FPDGFYNEVLVIAQVMSYDGENEPDIVAMIAASAALTLSGVPFMGPVGAARVGFSNEG
                     EYILNPTQAQVSEGRLDLVVAGTREAVMMVESEAKELSEDEMLGAVMFAHRSMQPVID
                     AIIKLAEQAAKEPWELAPQGDKAAIKKQLKDLIGADIDAAYRLTSKSDRSAALNSARE
                     KAAEAFAEADPQDQLVAMKLVKSIEADVVRGAILKEGRRIDGRDTKTVRPISISVGFL
                     PRTHGSALFTRGETQAIVTTTLGTKEAEQMIDGLEGLSYQRFMLHYNFPPYSVGEVGR
                     FGAPGRREVGHGKLAWRALHPMLPSIEEFPYTIRVLSDITESNGSSSMATVCGGSLAL
                     MDAGVPLKRPVAGIAMGLILEGKDFAVISDILGDEDHLGDMDFKVAGTSDGVTSLQMD
                     IKVAGITEEIMKTALAQAKDGRAHILGEMAKALGESRNELSAHAPRIETMSIPKDKIR
                     EVIGTGGKVIREIVAETGAKVDIDDDGTIKIASSDLSQIEAARNWIRGIVAEPEVGHI
                     YTGKVASIVDFGAFVTFMPGKDGLVHVSELKNERVENVRDVLQEGQEVKVKLLEIDPR
                     GKVRLSMRLVDQETGEELPDTRPPREPREPREGGDRGPRGDRSDRHRGGRDRDRGDRG
                     PRRDRGDRGPRGERGDRGERGPRRERDGSEGRGDNSPEPEFAPAFLTGDSED"
     gene            complement(4860..5129)
                     /gene="rpsO"
                     /locus_tag="VE968_00485"
     CDS             complement(4860..5129)
                     /gene="rpsO"
                     /locus_tag="VE968_00485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011240456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HZU50328.1"
                     /translation="MSITTERKQALIKEHAQGKGDTGSPEVQVAILTERINNLTTHFK
                     THAKDNHSRRGLLMLVNKRRSLLDYLRREDEQRYTDLIGKLGLRK"
     gene            complement(5148..6035)
                     /gene="truB"
                     /locus_tag="VE968_00490"
     CDS             complement(5148..6035)
                     /gene="truB"
                     /locus_tag="VE968_00490"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009822386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HZU50329.1"
                     /translation="MLHGWIILDKPVGLGSTQAVGAVKRILRESGEPRTKVGHGGTLD
                     PLASGVLPIALGEATKLCGRMLDATKHYEFKIRFGSETDTLDAEGAVIATSDVRPCRW
                     EMEAVLPSFSGEIEQVPPAYSALKIDGRAAYARARAGEVVAMKPRRVTVHDLQLMDED
                     EPETMRISALVSKGTYIRSLARDLAHALGSVGHVSYLRRTRAGPFSLDRAISLDFLEE
                     AAKARALARTVLPLDAALDDIPALPVTPDQARLLRHGQMLSGFPAPPGLGLASLEGTP
                     VALVEATADGLKVVRGFNL"
     gene            complement(6036..6653)
                     /locus_tag="VE968_00495"
     CDS             complement(6036..6653)
                     /locus_tag="VE968_00495"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004797 - thymidine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HZU50330.1"
                     /translation="MAKLYFYYAAMNAGKSTTLLQADFNYRERGMQTMLWTAAHDDRA
                     GIGTIGSRIALSAPAHRYDESIDLFQAIVDELKKRELDCILVDEAQFLTQAHVLQLCE
                     VADRLAIPVLCYGLRTDFQGKLFPGSAALLALSDSLIELKAVCDCGRKATMNLRVDAD
                     GNAIASGEQTEIGGNDRYIALCRKHFFERLRESHERQLTLGLARK"
     gene            6901..>9146
                     /locus_tag="VE968_00500"
     CDS             6901..>9146
                     /locus_tag="VE968_00500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017669215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50331.1"
                     /translation="MELTRWLAFFGASSILVSPLSAAPALYDKAQWSGLHYREVGPWR
                     GGRVTTVTGVPSQPFTFYMGTVGGGVWKTTDAGHNWVNTTDGQISVGSMGAVAVADSN
                     PNIIYAGTGSSKIRSNVSIGRGLYKSTDGAKTWTFMGLRDVGQIAAIRVNEHNPDELF
                     VAALGNPFKDNPQRGVFRSRDGGHTWQQVLFVNDELGAADIEYQPGNPQVLYATMWHG
                     LRKPWTIVSGSKDGGIFKSTDGGDHWTKLGGGLPTGLFGRANVGVSAAAPNRLYALIE
                     AKPGQGLYRSDDSGAHWQLVNGDTRLTTRPFYYDTLGIDPNNADIVYVGDENWFKSVD
                     GGKTFKTERTPHGDNHDVWINPRNSNYMIQSNDGGANISLDGGKTWSTQANQPTAEIY
                     QVAVDDQFPYRLYGAQQDNTTVIVPSLPLGDGQEFRIGPGCETGPIIPQLGDPNEVWG
                     GCKGQFTRLDLRTNRNEERFWIGSESLYGNDPSTLRYRFQRVAPMEISPVDPNTVYYG
                     SQFVHRSRDGGVTWEVISPDLTAHPADKQYGSGEPITRDATGEEVYSVVYAIRESAVK
                     PGVIWAGSNDGLVWVTKDAGKNWENVTPKGLPPGGRVQNIEPGVRAPGTAYVAIYRYL
                     LGDFSPYLYRTDDYGQTWTKLTDGTNGIAPDEPTRVVREDPVRPGLLYAGTEFGMYVS
                     FDNGANWQSLQLDLPAVPVTDIRLAHGDLVLSTQGRGFWILDNPSVLRQLPAPGAANA
                     SSRLYAPVT"
BASE COUNT         1766 a         2833 c         2694 g         1853 t
ORIGIN      
        1 tctcgtcctt cgtcacacgc atttcaatcg cctgcaccgg ctgctcgatg tcgaaggtct
       61 cggtcaaatc gatcgtgttg gtgatctgcc gggtcgcggc atcgaacacg ctgattgttc
      121 cacgctgttc ggatgacacc cagaccgtcc gaccgccgtg aaggaagagc acgaaacgcg
      181 gtctgctccc cactggaacg ctgtcgatga gctttccggt tgatgcgtca atgaagtgag
      241 cgaggttagc ggtttcggat gttgcgacaa cgagcttccc gtccgggctt acgccgacgc
      301 cttcaggctc gggcccaacc tttacctccc gaaagatctt ccctgtcttg agatcaagaa
      361 acgaaacggc actatggtct tcattggcga tataggcggt gcctccatcg gggctaatgg
      421 cgaagcgctc gggatcggtg cccgcgccat agagacgcag gagcttgcgg ctatgcacgt
      481 cccaagcttc gatgcggttc gcgttcgacg cggcaacata gaagattcgc ttgtcgggcg
      541 agaaggccat gcctcgaggg cgcggtccag tcgcgagctg tccctcgatt tttccgctcg
      601 caccgtcgag cacggtcacg tgccccgctt cgttcgaaac aaagacgatg tcgttcgacc
      661 gcatgacagg acgcgaacag caggcaagcg cgataagcga gaggattgcg aaaacgtgct
      721 tcatcaatct ggctcaatcg cgatttggct tttcgagcac aagtgagggg cgcatcggcc
      781 ttcgatgtct tgaacgcttt gtaatgttaa ccatcgagct ggtcctcacc agcaacagac
      841 gtggctcggg attcggtgct tgaagcttga gccaaccatc agttggcgtc tctcttgata
      901 gcgctaccat cctgtgttct catggcttgg ccaacttgag ggggatgaga gatggtgagt
      961 tcaaggctat ttgcggcggc acttgcagcg actgctccgt tcgcgcccgc cgcggcgcag
     1021 gacccgaacg acctcgccaa gcagatcgtc aacgatccga gcgcgccgga cgtgagcggg
     1081 gccaaggcga cccttgtcaa tgatccaaag gctcaaggcg gcaaggcact taggattgat
     1141 gtgcctcgca agggaagcaa tccctgggat tcgacggtcg gcggcacggt caagaaggcg
     1201 attagcaagg gtgaccgact ggtccttatc ttctcggcga gactgcagaa gggcgagaat
     1261 ggagcaacga cagcagtgct tccatataat gcggtccaac tcgccaccgc accctacacg
     1321 accgtgattt ccggcagcgg cgcaatcggt cctgactgga aggacttcca agtgacgggg
     1381 atctccgatg caaattacgc gccgggcgcg ctaaaggtca cgatccagct tgctaccgcc
     1441 aagcagacgg tcgacttcgg tcccatcgtg cttctcgacc ggggcaagta gctcagccgc
     1501 tcgaggcccc cagagctcat tcgttcccgg tctgctgctc cgcttcgagc ctcttgaggt
     1561 ccgcttcgcc atcgcttgcc atttgaagca atgtctggcg cgcctctggg tgattgatca
     1621 tggcggcaag ccttcggcac tgctcaacgc gtgcgcgtat tccccgaata acatcctcgt
     1681 tcatcgaccg gcccgatagc tcaacgaaaa cgtaatgtgg gttaacgttt agcttgggtc
     1741 tttgtgcccg cagatgaaga gattctcgag cgaatctcga gacatttaca cgaacttact
     1801 cgcgatcgtt cgctgccgaa ctcaacactt gaaccatctt tgcgtaaagc tcagccatct
     1861 cttcgtggac gcgccgtgaa ttcttgcact ccgtcgccgc agctgctcgc aactcctgct
     1921 ccatccgacg ctcataatag cccagatcac cgcccattca cttgcccccg tgccccggaa
     1981 cagcgctctt catctagaag ataatggaga cctaacaaca acttaggata gtttcaaaca
     2041 cttttgaaaa agctttctct tgatgggtcc aagtgatttg aaaagcggcc cggcttcccg
     2101 gaagggaagg tgccgggccg tgaggcccgc gtcctcttgg gcatgacagc gagcctctcc
     2161 ttctaaatag cactcgccaa acaaaattgc attcacctgc gtaacgaaat ggcgtgacgc
     2221 gcgatgcctc ggctccttgc cgagatcgca actcagggct tgcaaaagaa aaggccccgc
     2281 gattgctcgc gaggcctttc attttggtct caattgctcg ggttcagtct tcactgtcgc
     2341 cggtcaggaa ggctggagcg aattccggct cgggactatt gtcaccgcgt ccttcgcttc
     2401 cgtcgcgctc acggcgcggg ccgcgctcgc cgcggtcccc acgctcgccc cgtggaccgc
     2461 ggtcaccacg gtcgcgccgc ggacctcgat cgccgcggtc gcgatcgcgc ccaccacgat
     2521 gtcggtccga acggtcgccg cgaggaccac gatcgccgcc ctcgcgcggc tcgcgcggtt
     2581 cgcgtggtgg acgcgtgtcc ggaagttcct cgcccgtctc ctggtcaacc agtcgcatcg
     2641 acaggcgaac cttgccacgt gggtcgatct ccaggagctt gaccttgacc tcctggccct
     2701 cctggagaac gtcccggacg ttctcgaccc gctcgttctt tagctcggac acgtgcacaa
     2761 ggccgtcctt gccaggcatg aaggtcacga acgcgccaaa atcgacgatg ctcgcgacct
     2821 tgccggtgta gatgtggccg acttctggct cggcaacgat gccccggatc cagttgcgtg
     2881 ccgcttcgat ctgcgaaagg tcgctggacg cgatcttgat cgtgccgtca tcatcgatgt
     2941 cgacctttgc gccggtctcc gcgacgatct cccggataac cttgccgccc gttccgatga
     3001 cttcgcggat cttgtccttg ggaatgctca tcgtctcaat gcgcggagca tgggcgctaa
     3061 gctcgttgcg gctttcgccg agagccttgg ccatctcgcc gaggatgtgc gcgcggccgt
     3121 ccttcgcttg cgcgagagcg gtcttcatga tctcctcggt gatgcccgca accttgatgt
     3181 ccatctggag cgaggtcact ccgtcagacg tgccggcgac cttgaaatcc atgtcgccga
     3241 gatgatcctc gtcgccgagt atgtcactga ttacggcgaa atccttgcct tccagaatga
     3301 gacccatggc aatgcccgca accgggcgct tcaatggaac gccggcgtcc atcaaggcaa
     3361 ggctgccgcc gcaaacggtc gccatcgaag acgagccgtt ggactcggtg atgtccgaaa
     3421 ggacgcggat cgtgtaggga aattcctcga tgcttggcag catcggatga agcgcacgcc
     3481 acgcaagctt gccatggcca acctcgcggc ggcccggagc accgaaccgg ccgacttccc
     3541 cgaccgaata aggcgggaag ttatagtgaa gcatgaagcg ctgataggag aggccctcga
     3601 gcccatcgat catctgctcg gcttccttgg tgccgagcgt ggtcgtcacg atcgcctggg
     3661 tttcaccgcg cgtgaatagc gcggaaccgt gcgtgcgcgg aaggaagccg acgctgatgc
     3721 tgatcggtcg aaccgtcttg gtgtcgcgac cgtcgatccg gcgtccttcc ttcagaattg
     3781 cacctcgaac gacgtccgcc tcgatgctct tgacgagctt cattgcaacg agctggtcct
     3841 ggggatcagc ctcggcaaat gcttcagccg ctttttcccg tgccgagttc agcgccgcgc
     3901 ttcggtcgga cttgctggtc agccggtagg cagcatcgat gtccgcaccg atgagatcct
     3961 tgagctgctt cttgattgct gccttgtcgc cctgcggcgc aagctcccac ggctctttcg
     4021 ccgcctgctc ggcaagcttg atgatcgcgt cgatcactgg ctgcatcgag cgatgcgcga
     4081 acatgaccgc gcccagcatc tcgtcctcgg aaagctcctt ggcttccgat tcgaccatca
     4141 tcacggcttc gcgggtgccg gcgacaacca ggtcaagacg cccttcgctc acctgcgcct
     4201 gcgttgggtt caggatatat tcgccctcgt tgctgaagcc gacgcgagcg gctccgaccg
     4261 gtcccatgaa gggaacgccc gacagggtga gcgcagccga ggcggcaatc atcgcgacga
     4321 tgtcgggctc gttctccccg tcgtagctca tgacctgggc gatcacgagg acttcattgt
     4381 aaaagccgtc ggggaacaac ggacggatcg gccggtcgat gagccggctt gtgagtgtct
     4441 ccttttcggt cgctccgcgc tcgcgcttga agaagccgcc cgggatccga ccggcggccg
     4501 agaatttctc ctggtagtgg accgtcagcg ggaaaaagtc ctggccaggc ttgaccgatt
     4561 tcgcggccgt gacggcgcat agaacgacgg tctcgccgag cgtcgcaaga acggcgccgt
     4621 cggcttgacg ggcaatgcgg cccgtctcga gcttcagcgt cttcccgccc cactcgattt
     4681 ctacagtttt ggtatcgaac atttatcgtc ccttcacccg gcgccctatt gcgacgggga
     4741 catctgcgag cttcccggct cgctcggttc ggggcgttct ttcgtgcccc atgaacgccc
     4801 cgccgaattg cagggaccga acatatgcga agcggcccac atgggccgct tccaaagcct
     4861 tacttcctga ggccgagctt gccgataagg tcggtgtagc gctgctcgtc ctcgcgacgg
     4921 aggtagtcga gaagcgaccg acgcttgtta accagcatca gaagaccgcg acgcgaatga
     4981 ttgtccttgg cgtgggtctt gaagtgcgtc gtcaggttgt tgatgcgctc ggtcagaatt
     5041 gcgacctgta cttccggcga accggtgtcg cccttgcctt gcgcatgctc cttgatgagc
     5101 gcctgcttgc gctccgttgt aatcgacatc gtgtcactcc tattcgtcta aaggttgaac
     5161 ccccggacaa ccttgaggcc gtcggccgtt gcctcgacca gcgcgaccgg agttccctcc
     5221 aggctcgcca atccaagccc cggcggtgcg gggaaccccg acagcatctg cccatgacgg
     5281 agcagacgag cctgatcggg ggtgacgggg agggccggga tgtcgtccag cgccgcgtca
     5341 agcggcagta ccgtcctcgc cagtgcgcgc gccttagcgg cttcctccag aaagtccagc
     5401 gaaatggctc gatcgagact gaatggccca gcgcgcgtgc gtcttagata ggagacatgg
     5461 cccacacttc caagcgcatg agcaagatcg cgggcaagcg accggatgta cgtccccttg
     5521 gagaccagcg ctgaaatgcg catcgtctcc ggctcatcct catccatcag ttgaaggtcg
     5581 tgcacggtca ctcgccgcgg cttcatagcg acgacttcgc cagctcttgc ccgcgcatag
     5641 gccgcccttc cgtcgatctt gagcgcggaa taagcgggcg gcacctgctc gatttctccg
     5701 ctgaatgacg gaaggaccgc ctccatttcc cagcggcacg gtcgaacgtc gctcgttgcg
     5761 atgaccgcgc cttcggcatc gagtgtatcc gtctccgagc cgaagcgaat cttgaactca
     5821 taatgcttgg tcgcgtccag cattcggccg cacaatttgg ttgcttcgcc aagcgcaatt
     5881 ggaaggacgc cgctggccaa aggatcgagc gttccaccgt gcccgacctt cgttcgaggc
     5941 tcgcctgatt cgcgcaggat ccgttttacg gcgccgacgg cctgggttga tccaagcccc
     6001 accggcttat cgaggatgat ccagccgtga agcatctatt tgcgtgcaag tccaagggtc
     6061 agctgccgct cgtgactttc gcgcaggcgc tcaaaaaagt gcttgcggca aagcgcgatg
     6121 taacgatcat tgccgccgat ctcggtctgc tcgcccgacg cgatggcatt tccatcagca
     6181 tcgaccctaa ggttcatcgt cgcctttcgg ccgcaatcgc acaccgcctt gagttcaatg
     6241 agcgagtccg aaagcgcgag caacgcggct gatccgggaa agagttttcc ctggaagtca
     6301 gttcttagcc cgtaacagag gaccgggatt gcgagacggt cagcaacttc gcacagctga
     6361 agaacatggg cctgggtcag gaattgtgcc tcgtcgacga gaatgcaatc gagttctcgc
     6421 ttcttgagct cgtcgacgat cgcctggaac agatcgatcg actcgtcgta tctatgcgct
     6481 ggcgccgaca gggcaatgcg tgagcctata gttccaatcc ctgcacgatc atcgtgcgcg
     6541 gcggtccaca gcatcgtttg catgccgcgt tcgcggtagt tgaaatccgc ctgcagcagg
     6601 gtcgtcgatt tgccggcgtt cattgccgca tagtaaaagt aaagcttggc catcgagtat
     6661 ttgttagcgt gggcttcaag tccggccaat tcgcagcaag gcatcccacc agcaatcatc
     6721 atcgtttgcc gacacggcag gcgcgtgccg ccgcaacgcg ctcgtcccga ctgcgcccga
     6781 gggagcgatc gctcgtgctt cttgacagac gagccgagcg gccgaagaaa gacgcactga
     6841 cccgatcggc gtcacgactt gatttcctca ccacttaact agcgtgaaag aaggaacggc
     6901 atggagctca cccgctggct cgcctttttt ggtgcaagca gcattctcgt cagtccactt
     6961 tcagcggcgc ctgcccttta cgacaaggcg cagtggtcgg ggctacatta tcgcgaggtc
     7021 ggcccgtggc gtggcggacg agtgacgact gtcaccggtg tcccgtcgca gcctttcact
     7081 ttctatatgg gcaccgttgg cggtggcgtt tggaagacaa cggacgccgg ccataattgg
     7141 gtgaacacca ccgacggaca gatttcggtt ggttcaatgg gcgctgttgc ggtcgccgat
     7201 tccaatccga acatcatcta tgcaggcacg ggctcgtcaa agatccggag caacgtctcg
     7261 attggtcgcg gactgtacaa gtcgaccgac ggggcgaaga cctggacctt catgggactt
     7321 cgtgatgtcg ggcagatcgc ggcgatccgt gttaacgaac ataaccccga cgaacttttc
     7381 gtcgccgcgc tgggcaatcc gttcaaggac aacccgcagc ggggcgtgtt ccggagcagg
     7441 gacggtggac acacgtggca gcaggtgctt ttcgtcaacg acgagctcgg cgccgccgac
     7501 attgaatacc aacccggaaa tccgcaggtc ctttacgcca ccatgtggca cggccttcgc
     7561 aagccctgga ccatcgtctc gggaagcaag gatggtggca ttttcaagtc gacggacggt
     7621 ggcgaccact ggaccaagct tggcggcggc cttccgaccg gtctttttgg ccgcgcaaac
     7681 gtcggcgtca gtgccgcggc gccgaaccgc ctctatgcat tgatcgaagc aaagccgggc
     7741 caaggactct accgatccga cgattccggg gctcactggc aactcgttaa cggcgacacg
     7801 cgcctcacga cgcggccgtt ctactatgac acgctcggta tcgatcccaa caatgccgat
     7861 atcgtctatg tcggcgacga gaattggttc aagtcggtcg acggcggcaa gacattcaag
     7921 actgagcgaa cgccgcacgg cgacaaccac gacgtttgga tcaatccgcg caattcaaat
     7981 tacatgatcc agtcgaatga tggcggcgcc aatatatcgc ttgatggcgg aaagacctgg
     8041 agcacacagg caaaccagcc gaccgcagag atctaccagg tcgcggtgga cgaccagttc
     8101 ccatatcggc tgtacggcgc gcagcaggac aacacgaccg tcatcgttcc ctcattgccg
     8161 cttggcgatg gtcaggaatt ccggattggc ccgggttgcg aaacaggccc gatcattccc
     8221 cagctcggtg atcccaatga ggtatggggc gggtgcaagg ggcagttcac gcgtcttgat
     8281 ctgcggacca acagaaacga ggagcgcttc tggatcggaa gcgaatccct ctatggcaat
     8341 gatcccagta ccctaaggta ccggttccag cgcgtggcgc cgatggagat ttcgccggtc
     8401 gatccgaata ccgtctatta cggatcgcag ttcgtgcatc gatcgcgcga cggcggcgtg
     8461 acgtgggagg tcatcagccc cgacctcacc gcgcatcccg ccgacaagca atatggttcg
     8521 ggcgagccaa tcacgcgcga cgcgaccggc gaagaggtct actcggtcgt ctacgcgatc
     8581 cgcgaaagtg ccgttaagcc cggcgtcata tgggccggct cgaacgatgg cctcgtctgg
     8641 gtgacgaagg acgcgggcaa gaactgggag aacgtgacgc ccaagggact gccgcccggc
     8701 ggacgcgttc agaacatcga acctggagtg cgcgcgccgg gcactgctta tgtcgcaatc
     8761 taccgatatc tgctcggcga cttctcgccc tatctgtatc gcacggacga ctacgggcag
     8821 acatggacca agcttaccga cgggaccaat ggaatcgcgc ccgatgagcc aacgcgcgtc
     8881 gtacgggaag atcctgtccg tccaggcttg ctttatgccg gcaccgagtt cgggatgtat
     8941 gtttcgttcg acaatggcgc gaattggcag agcctgcagc tcgacctgcc ggcggtaccc
     9001 gtcacggaca ttcggcttgc ccacggagac ctggtacttt cgacgcaggg aaggggcttc
     9061 tggattctcg acaatccgag tgtccttcgc cagctccccg cgccaggagc ggccaatgct
     9121 tcgagccgcc tttatgcgcc cgtcac
//
LOCUS       DASRBJ010000019        14483 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_53110,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000019 DASRBJ010000000
VERSION     DASRBJ010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 14483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14483
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53110"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..307
                     /locus_tag="VE968_00505"
     CDS             <1..307
                     /locus_tag="VE968_00505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HZU50332.1"
                     /translation="LAGIIGALVIASWSYSLVRDTAAILLDVNPDQGLSDRIRSAVEA
                     EGDRVYDLHLWRLGPGHLGAIISVATDRERDASFYRERLVGLPHLSHLTIEVVRLSR"
     gene            304..711
                     /locus_tag="VE968_00510"
     CDS             304..711
                     /locus_tag="VE968_00510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50333.1"
                     /translation="MTSFWTLVGVGFATGIATLAGGGLALRLRAILNLLVAFSAGTIV
                     GVALFDLLPEALDLSANASSNLGIMTAIATGFAVYLIADRISVVTSKQSDGPRHLGPA
                     SLTTHSLLDGVAIGLAFHVSAGRNHRRSGRARP"
     gene            734..1018
                     /locus_tag="VE968_00515"
     CDS             734..1018
                     /locus_tag="VE968_00515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50334.1"
                     /translation="MALSLSTGSANTTARLWLAADALAPLVGLLLGREIDVPVFTLAR
                     LLGVFSGFFLYLGASQLLPRSQALRPKLSTTAATVAGLVFIYALVRIASG"
     gene            complement(1524..1970)
                     /locus_tag="VE968_00520"
     CDS             complement(1524..1970)
                     /locus_tag="VE968_00520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50335.1"
                     /translation="MLKRAMFAAAGMIAIAAPAAAQYVSPYGYQGYSYPTYQYPSYSY
                     QQYGYQYPYQPYRYSYPSTSYGSPYANGYYGNRYGYGANGYGYQGSGYGYPPYGYGYD
                     GYRYAPSANTPYPYGYRQSWRDSGRYDDQGYDSRYDDDYDDGPQGL"
     gene            complement(2143..2535)
                     /locus_tag="VE968_00525"
     CDS             complement(2143..2535)
                     /locus_tag="VE968_00525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HZU50336.1"
                     /translation="MPKGQCHCGAVQYEMPTETSHTSLCHCSDCRRHSGAPLVAWALV
                     SRDKLRISGETREYASSENGRRHFCPECGTSLFYTNEAIFPDKVDVQFSTLDDPNAFV
                     PTTQIQTAERIHWMEQLNDIPEFERYPG"
     gene            complement(2639..3451)
                     /locus_tag="VE968_00530"
     CDS             complement(2639..3451)
                     /locus_tag="VE968_00530"
                     /inference="COORDINATES: protein motif:HMM:NF039197.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5694 domain-containing protein"
                     /protein_id="HZU50337.1"
                     /translation="MAATPAPDGGPRMPQLLILGSPHLANHNRDIANIDVEDVRERER
                     QREIEAVVAGLASFHPTRIAVEWAADQQARLDERYNDYRAGTYRLSADEVDQIGLRLA
                     ARLHLERVYAIDWNRDAPGKDVDYDFIAWADAHGRGAAWRDLQQHAQERAAEESKLMR
                     CTSISAWYRRLNTPAYRRSDQRFYYAIATFGDQAENPGAAWVGAWYARNLRILDNLRS
                     IAQAGDRILVVYGAGHGFLLDQQARESGVFEVADTLHYLPSSPSDSWTSCRR"
     gene            3633..4556
                     /locus_tag="VE968_00535"
     CDS             3633..4556
                     /locus_tag="VE968_00535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007714884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEPN domain-containing protein"
                     /protein_id="HZU50338.1"
                     /translation="MRSDIDHLPLGKQRELQRVVQVLFEEFEEARALSTQKWKKKGRI
                     LKIILYGSYARGTFVDEPHTAKGYQSDYDLLVIVNDSRLTDRVDYWSKAEERLNRELS
                     ITRTMKTPVNFIVHTLHEVNDGLAHGRFFFIDVQRDGIALYQSDDSELAEPRPKTPDQ
                     AAALAKEYFEEWFPSAIVYLNTARDLATKNRPKEAAFLMHQAAERLYHCVLLVVTFYT
                     PHVHNLGFLRTQAERLDRRLAYVWPKDSHRERAMFEKLKDAYVKARYSKHYRISEEEL
                     EWLGAHVEELGRVVQDVCLERIQMLERSAAA"
     gene            4727..6739
                     /locus_tag="VE968_00540"
     CDS             4727..6739
                     /locus_tag="VE968_00540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG"
                     /protein_id="HZU50339.1"
                     /translation="MTPTKLLIGQMLAVFAIIALGMWAATQWAASMLAYQPQLGRAWF
                     NFASVPLYRPWSLFVWWYEYEAYAPAIFSKAGALAASSGFVGCGAAVAGSLWRARQGS
                     HVDTYGSARWAEEHDLRIAGLLSNDGLFLGTLRGRYLRHSGPEHLLAFAPTRTGKGVG
                     LVIPTLLSWTGSVVIHDIKGENWELTAGWRALFSHCLLFNPTDPRSARYNPLLEVRRG
                     ANEVRDVQNIADILVDPEGALERRNHWEKTAHSLLVGTILHILYAENEKTLSRVATFL
                     SDPSRDFTSTLRVMMTTNHLGTVERPLVHPVVSSAARELLNKSENERSGVLSTAMSFL
                     GLYRDPTVAAVTSDCDWRIEDLLHGERPASLYLVVPPSDISRTKPLVRLVLNQIGRRL
                     TERLEAPAARSTRQLLLMLDEFPALGRLDFFETALAFMAGYGIRAFLIAQSLNQIVKA
                     YGENNSILDNCHIRVVFATNDERTAKRISDALGTATEQRSMRNYAGHRLAPWLAHVMV
                     SRQETARPLLTPGEVMQLPQTDELVLLAGMPPIRARKLRYFEDQRFTDRLLAAPSLDE
                     GTYGDRPPQRAHDWVGQVSRAERIDDQNDECVEGGDALEHQVHLGRSSDRMLAPPPMP
                     IDGIGLWPDTDDERPLSVSFPELTRVVAADGINQQHDRQSDLVPSF"
     gene            6753..7181
                     /locus_tag="VE968_00545"
     CDS             6753..7181
                     /locus_tag="VE968_00545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HZU50340.1"
                     /translation="MPRLVATRRQFRLPIELNDRLNEVSRKSKVPATVIIADALRSWL
                     NRKGEDELELRFGASQNRILRQLGRLDRKDNIILETLALFILYMLTINAPIPEGDDTA
                     RAIGRDRFEAFVERVGRKIRTGRTTFLHDFDEDSDGSEKK"
     gene            7178..8167
                     /gene="trbB"
                     /locus_tag="VE968_00550"
     CDS             7178..8167
                     /gene="trbB"
                     /locus_tag="VE968_00550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020817619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer ATPase TrbB"
                     /protein_id="HZU50341.1"
                     /translation="MSALETADRQRSMLRTAMGPHIAAALRDSEVVEVMVNPDGALRL
                     DRLGAGRLDTGVVLEPDQTERIIRLVASHARTEVHASAPIVSAELPPLTDGIAGERFE
                     GVLPPVSTAPCFAIRKPAQRIYRLADYVADGVMSASFARLLSQSVLERRNILVAGGTS
                     SGKTTLANALLADLAVRDERVILIEDTRELQCAACDTVALRTRPGVVGMAELVRSTLR
                     LRPDRIIVGEVRGREALDMLKAWNTGHPGGIATVHANSSRAALYRLEQLVQEAVIAVP
                     RRLIAEAIDLIVFISGRGTDRRIEAIDCVEGLDDRGDYALRPHISSNPQTIGE"
     gene            8170..8499
                     /locus_tag="VE968_00555"
     CDS             8170..8499
                     /locus_tag="VE968_00555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014076924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HZU50342.1"
                     /translation="MGCSPPCLRRCAARASFLVTILLSARAQAAGSGMPWEEPLQKVL
                     DSVQGPVAKIVAVIIIITTGLTLAFGETGGGFRRLIQIVFGLSIAFAASSFFLSFFSF
                     GGGAMVS"
     gene            8496..8768
                     /locus_tag="VE968_00560"
     CDS             8496..8768
                     /locus_tag="VE968_00560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003039677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB3 family type IV secretion system protein"
                     /protein_id="HZU50343.1"
                     /translation="MKNSADHLDGFEVPVHRSLVEPILLGGAPRALAILNGTIAAALG
                     LGLQQWLAGIAIWALGHSTAVIAARRDPDFAPVLVRHLRQRANLSC"
     gene            8762..11197
                     /gene="trbE"
                     /locus_tag="VE968_00565"
     CDS             8762..11197
                     /gene="trbE"
                     /locus_tag="VE968_00565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbE"
                     /protein_id="HZU50344.1"
                     /translation="MLNLAEYRAHSDRLADHLPWAALVGPGVVLNKDGSFQRSFAFRG
                     PDLESATEAELVSVSARANNMLKRFGSGWALFFEAERIEALGYPKAEFPDPGSWLVDE
                     ERKASFEGGREHFESRYYLTLVWLPPVDVEERVERALVERRAKAQERDWREALQSFIA
                     ETDRALDLMSGFMPEVRALDDDEALTFLHRAVSPASHRVVAPETPIYLDALLADTPLS
                     GGLEPMLGDLHLRTLTVLGFPSLSRPGILDTLNHQDFSYRWVTRFIPLDRTEAARALT
                     KLRRQWFNKRKSVSALLREVMYNQPVQLTDSDADNKVVDADEALQELGGDHVAFGYLT
                     TTITVADEDPSRADEKVRAIERIVNGLGFTIKRERMNAVEAWLSSLPGQVYANVRQPL
                     VHTLNLAHVMPLSSTWAGPAQNNHLSGPPLLFAETSGSTPFRLSTHVGDVGHMLIVGP
                     TGAGKSVLLALLALQFRRYPGSRIIIFDKGWSARTAVLAMGGAHHELGVNNATLTFQP
                     LRRIDEPAERSWAADWLLALMERQGLRVTPDIGEALWSALLSLASAPPEERTLTGFSL
                     LLQSNALKSALQPYTLEGPFGPLLDATKDALELADVHCFETETLMRQADSVSPVLSYL
                     FHRLEESFDGSPTLLLLDEAWLFLDHPIFAARIREWLKVLRKKNVAVIFATQSLADIG
                     SSSIATAIIESCPQRIFLANDRAIEPQIREIYDRFGLNPRQVELIARATPKRDYYLQS
                     RSGNRLFDLALGPIALALCGTSDAASRLLVDEIVKQHGTDRFLAHLLQVRGLNWAAPL
                     LDQFAANQEGVRS"
     gene            11194..11922
                     /gene="trbJ"
                     /locus_tag="VE968_00570"
     CDS             11194..11922
                     /gene="trbJ"
                     /locus_tag="VE968_00570"
                     /inference="COORDINATES: protein motif:HMM:NF010448.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009291 - unidirectional conjugation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbJ"
                     /protein_id="HZU50345.1"
                     /translation="MRVNRHVRTLVVVALGTAMSFALPRSSAAASGLPVFDAANYAQN
                     LLQAARTLDQINNQVRSLQNEASMLQNMARNLQSLDFPQLGQMSATMQQITQLMSKAE
                     GIEFKVAGLDQQVRTLFPGAVQEAVSSDQRIAAARARLEAATAAYRQAMTVQASVAEN
                     VEADASMLGELSASSEGAIGALQVGQAANQLMALSIKQQLQLQTLMATEFRQAAIDRA
                     RRAQAEEDGRAATRRFVDGAAATN"
     gene            12031..13335
                     /gene="trbL"
                     /locus_tag="VE968_00575"
     CDS             12031..13335
                     /gene="trbL"
                     /locus_tag="VE968_00575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007686905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009291 - unidirectional conjugation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbL"
                     /protein_id="HZU50346.1"
                     /translation="MGDLSVVDRFMAAFIQYIDSGFGLLRGDVSFLTTTLVGIDITLA
                     GLFWALGGEDDVIPRFLKKILYVGAFALIIGSFSTLADIIFRSFAGLGITAGGGALSA
                     DQLLKPGFIASTGFDAAKPLLDQVSELIGVTSFFENFLTIVVLMTSWLLVILAFFILS
                     VQLFITIIEFKLTTLAGFVLVPFALWNRTAFLAERVLGNVISAGIKVMVLAVIVGIGS
                     GFFTEFKAAAAGDQPDLLGSMSLVLASLSLLGLGIFGPTIASGLVAGAPQLGAGSAVA
                     TTAAAVGGVAIAGSTLAGGARAIGGMSLGAVRAGAAMGAAASTSYRLGQETSASRTIR
                     AGVGGVAHAAGAHLRQKIAGAGGISAAVEHGEKRALFGGSKGAAATSPGEDAAMDGAP
                     AWARRLRAEQTARHFRQATFQAIREGDRGGGGANPDIKEKEE"
     gene            13339..14142
                     /gene="trbF"
                     /locus_tag="VE968_00580"
     CDS             13339..14142
                     /gene="trbF"
                     /locus_tag="VE968_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010128019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbF"
                     /protein_id="HZU50347.1"
                     /translation="MRFRRAVQRYGRTPEPQTPYQRAGQLWDERIGSARVQARNWRFM
                     ALGGLILSTGLSAGLLWQSNQSRVTPYVVEVDRLGEARAINPAVRDYQPTDPQISWHL
                     AKFISDVRSVSLDPVVMRQNWLSAYDFVTGRGAKFLDDYARSANPFSQLGIRTVSVQP
                     TSIVRASDRSFEVKWTESEFERGNYVASSRWTAILTVVMKPPVSAETLRKNPLGLYID
                     AIDWTRELETNAPPVREPPQVRGNLPLGSPLDPDLASAQPSTLPMRNSQ"
     gene            14139..>14483
                     /locus_tag="VE968_00585"
     CDS             14139..>14483
                     /locus_tag="VE968_00585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015740170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50348.1"
                     /translation="MTTALLLAALVATSSSGEGTAEVSTDTRLVAPLLSDAPSAHRQP
                     LSLHKRGLGRRAAVTSIEKANHDALAEPAAATNLGAEQIYPWSEGAIFPLSTAPGEVT
                     DIALQPGESLVSV"
BASE COUNT         2811 a         4327 c         4325 g         3020 t
ORIGIN      
        1 actcgccggg ataataggtg cactggtgat tgccagttgg tcctacagcc ttgtccgcga
       61 tacggccgcg attctgctcg acgtgaaccc ggatcaaggc ctttcggacc gaattcgcag
      121 cgccgtcgag gcagaaggag accgcgtata cgatcttcac ctgtggcgac ttgggccggg
      181 gcacttaggc gcgattatca gcgtagccac tgatcgcgag agggacgcga gcttttatcg
      241 ggagcggctt gtgggcttgc cacacctctc gcacctgacg atcgaggtcg taaggctctc
      301 gaggtgacgt cattctggac gctcgtcggc gttggctttg caactggcat agcaacgctt
      361 gcgggcggcg ggttggcact ccgccttcgc gctatcctta atctcttggt ggccttttca
      421 gcgggcacga tcgtcggggt cgcccttttc gatttgctgc ccgaggcgct cgatttgtca
      481 gccaatgcct caagcaatct gggcattatg acggcgattg cgacaggctt cgcagtttat
      541 ctcatcgcgg accgcatttc agtggttacg tcaaaacagt cggacggccc tcggcacttg
      601 ggtccggcca gtcttacgac gcatagtttg ctcgacggcg ttgcaatagg tctcgctttt
      661 cacgtgtcgg ccggcaggaa tcatcgtcgc tctgggcgtg ctcgcccatg attgcatcga
      721 cggcgcgaat accgtggcgt tgagcctttc gacaggctcg gcaaacacga ccgctcggct
      781 gtggctcgca gctgatgcgc tcgcgccgtt ggtcggacta ttgctcggcc gtgaaattga
      841 cgttccggtc ttcacgctcg cacggctgct tggcgttttt agcgggttct ttctctacct
      901 tggtgcaagt cagctgctgc cccgcagcca ggctctacga ccgaagcttt cgacgaccgc
      961 agcgaccgtc gctgggttgg tgttcatcta tgctctggtg cgaatagcga gcggctaaat
     1021 ttccgggctg acggcaaact gctccactgc aggtgaaaag ctagcactca gcggcgctcg
     1081 ctgggcataa gccgcgaaaa aaccatagat gcgatgaagg ccactagagc tcctactaga
     1141 gcgtgcatat tgctgtcgag tgagcttggc acagcaaatc ggagaacgag atagatcgtg
     1201 atcgccacta gaagatcccg caggaacgcg cgttggggcg tcgtctgagc tcgcatcttc
     1261 acctgccgaa taaagcatag gaaacaacgc gcaaatttgc gcaaatatcc agtcgcagcg
     1321 ccttgccact acgagtgact aacgagctgc gccgctgcaa ttgaggccca cggctcgaag
     1381 aagttcagtg gtccactatt ggagtcgata atgcgaaata agcgcgggca ttcgctcgac
     1441 gccgcgctcc gtatcaagtc agccctgatc aacatccggg atacacgcga ggcgcggacc
     1501 agcgcctcgc gaaaactcaa gcctcacaga ccctgaggcc cgtcgtcgta atcgtcgtcg
     1561 taccgtgagt cgtagccttg gtcatcgtag cggccgctat cgcgccagga ctgacggtag
     1621 ccatacggat agggcgtgtt ggccgaaggc gcgtaccggt agccgtcata gccatagccg
     1681 taaggcgggt agccatagcc gcttccctga tagccatagc catttgcacc ataaccatag
     1741 cgattgccgt aatagccatt cgcatagggc gagccgtacg acgttgacgg gtagctgtag
     1801 cggtaaggct ggtacggata ttggtagcca tattgttggt acgagtagga aggatactga
     1861 taggtcgggt aagagtatcc ctgatagccg taggggctga catattgggc ggccgccggc
     1921 gctgcgatcg cgatcattcc ggcggcggca aacattgcgc gcttgagcat agaacctcct
     1981 gagccccctg acgcaaccga acgcgcgaat tgtcctgcag gttcatgaac ttatccggct
     2041 caccatgttt ggcggccgct ccacctcaaa cgaacggcgg tccggagtct gtgtgctcgc
     2101 cgatctgacc ggccgctcac gctgcttgga ggaagcacgt tgtcaacccg gataacgttc
     2161 gaactccgga atgtcgttca gctgctccat ccaatggatc cgttcggctg tctggatctg
     2221 cgtcgtcggt acaaaggcgt tgggatcgtc gagggtcgaa aattgcacgt cgactttatc
     2281 ggggaaaatg gcctcgttcg tataaaagag actggtgccg cattcgggac agaagtgacg
     2341 acgaccgttc tctgacgacg catattccct cgtctcgccg ctgatgcgca gtttgtctct
     2401 ggagacgagt gcccaggcaa caagtggcgc gcccgagtgc ctccggcagt cggagcagtg
     2461 gcatagcgat gtatgcgagg tttcggttgg catttcatat tgcacggcgc cgcagtggca
     2521 ttgcccttta ggcattctct cgccctcttc ccgctaacgg ttcgcatgca aattacggaa
     2581 cagacctgaa tgcggcaagc gatggatggg aacagttggg agtgtcgctg tcttcaagtc
     2641 accgacggca actcgtccat gaatcgctcg gcgagctcgg gaggtaatga agggtgtcag
     2701 cgacctcgaa cacacccgac tcgcgcgcct gttggtcgag caggaatccg tgcccggcac
     2761 cataaacaac taaaatccta tcaccggcct gtgcgatgct cctcaaattg tcgagaatgc
     2821 gcaggttgcg agcgtaccac gcgccgaccc acgccgcgcc ggggttctcg gcctgatcac
     2881 caaaggttgc tatcgcataa tagaagcgct gatcggagcg ccggtaagcg ggcgtgttga
     2941 gccgccgata ccaagccgag attgacgtgc acctcatgag cttgctctcc tcagcggccc
     3001 gttcttgagc atgctgttgc aaatcgcgcc atgcggcgcc tcgtccatgc gcatcggccc
     3061 aggcgatgaa gtcataatct acatctttgc ccggcgcatc gcggttccag tcgatcgcat
     3121 agacgcgctc gagatggagc cgcgcggcaa gcctcaatcc aatctgatca acttcgtcgg
     3181 ccgaaagcct ataggtgccc gcacgataat cattgtagcg ttcgtcaagg cgggcttgct
     3241 gatcggcggc ccattcaacg gcgatgcgag tgggatgaaa agacgcaagc ccagctacga
     3301 cagcctcgat ctcgcgctgg cgctcgcgct cgcgaacgtc ctcaacgtca atgtttgcaa
     3361 tgtcgcgatt gtggtttgct agatgtgggg atccgaggat cagcagctgg ggcattctcg
     3421 ggccgccgtc cggtgctggc gtggcggcca cggctgagac tgacattatc aactcgacga
     3481 tcatagacaa aagttcttgc tctttggtgt attagtacac caaggcgctg ccgtaagcca
     3541 tgtcaagaca aagtgactgg agccgaacag caacgccctg cggcgaccgg actctttgcg
     3601 ctgtgcacgt cagtgcttag gatcgttccg cgatgcgcag cgacattgat catctgcctt
     3661 tgggaaagca gcgcgagttg cagcgagtgg tgcaggtgct gttcgaggag ttcgaggagg
     3721 cgcgggcgct ttcaacccag aagtggaaga agaagggacg gatcttgaag atcatccttt
     3781 atggctccta tgcccgaggc acctttgtcg acgagccgca caccgccaag ggctaccagt
     3841 cggactatga cctcctcgtg atcgtcaacg attcacggct gaccgatcgg gttgactatt
     3901 ggagcaaggc cgaggagcgc ttgaaccgcg agctctcgat tacaaggaca atgaagaccc
     3961 cggtcaactt catcgtccat acgcttcatg aagtgaacga tggtctcgcc catggccgct
     4021 tcttcttcat cgatgtgcaa cgcgacggca ttgctcttta ccagagcgat gacagcgaac
     4081 ttgccgaacc ccggcccaag acaccggacc aggccgcagc actcgcaaag gaatatttcg
     4141 aggagtggtt tccgagcgcg atagtttatc tgaataccgc acgtgatctg gcgacaaaga
     4201 accgaccgaa agaagcggcg ttcttgatgc atcaagccgc cgagcggctt taccattgcg
     4261 tccttctggt cgtgaccttc tacaccccgc acgttcataa cctggggttc ctgcgcacgc
     4321 aggcggaacg tcttgatcgt cgcctggctt acgtctggcc caaggactcc catcgcgagc
     4381 gtgcgatgtt cgagaagttg aaggatgcct atgtgaaggc gcgctactcg aagcactacc
     4441 gcatatcaga ggaagaactg gaatggctcg gcgcgcacgt cgaggaactc ggccgcgtcg
     4501 tccaggatgt ctgtctcgag cggatccaaa tgctcgagcg gagtgccgcg gcttaattcg
     4561 gcgacgcgat cagagttctc ggcggtcgca ctggcaatct ggaatgggca tcgcgtgaga
     4621 ttcgctagcg agcatcatcc tgcgaccccc gagtagtaag cgcgactcgc ggcaatgaac
     4681 gatggcttgg gcgcccgccg acattcggcg gaatcggagc cctatcgtga cgccaaccaa
     4741 gctgctgatc ggtcaaatgc tcgcagtgtt tgcgatcatc gcccttggaa tgtgggctgc
     4801 gacacaatgg gccgcgtcga tgcttgctta ccagcctcag ctcgggcgtg cctggttcaa
     4861 ctttgccagc gttccgctct atcgaccttg gtcgttgttc gtctggtggt atgaatatga
     4921 ggcttacgcg ccagcgatat tcagcaaagc cggcgccctc gcagcatcaa gcggttttgt
     4981 tggttgcggc gcagccgtag caggctcact gtggcgggct cgacaaggct cccacgtcga
     5041 tacttatggg tccgcgcggt gggctgagga acacgatctt cgcattgccg gacttttgtc
     5101 gaacgacggg ctatttctgg gcaccttgcg cggacggtat ctaaggcaca gcgggcctga
     5161 acatctcctc gcgtttgcgc cgacccgaac gggcaagggc gttgggctcg tcattccaac
     5221 ccttctgtcc tggacgggat ccgtcgtgat ccacgatata aagggcgaga attgggagct
     5281 gacggccggg tggcgcgcac tcttttcgca ctgtctcctg ttcaatccga cggatccgcg
     5341 ttcggcgcgc tacaatcctc tgctcgaagt tcggcgtggc gccaatgaag tgcgggacgt
     5401 ccaaaatatt gccgacattc tcgtcgatcc cgaaggagcg cttgagcgtc gaaatcactg
     5461 ggagaaaaca gctcactcgc tactcgttgg aacgatcctc cacatactct acgcggagaa
     5521 tgagaagacg ttgtcacggg tcgcgacgtt tctctccgat ccgagccggg atttcacttc
     5581 gacgctcaga gtaatgatga cgaccaatca ccttgggacg gttgagaggc ccttggttca
     5641 tccggtcgtt tcatccgccg cgcgcgagct cctcaacaag tcggaaaatg agcgctcagg
     5701 tgtgctctcg acggcaatgt ccttcctcgg tctctatcgt gatccaaccg tcgcggcggt
     5761 cacgtccgat tgcgattggc ggatcgagga cctgcttcac ggggaacgtc cagcgtcact
     5821 gtacttagtc gttcctcctt cagacatttc ccgcaccaag ccgctcgtcc gccttgtcct
     5881 caaccagatt ggacgacggc tcaccgaacg gctcgaagcg cctgcggcac gatccactcg
     5941 gcaattgttg cttatgcttg atgagttccc ggcactcggc cggctcgact tcttcgaaac
     6001 tgcgcttgcc tttatggcgg gttacggaat ccgcgcgttc ctcattgccc aatcattaaa
     6061 ccaaattgtg aaggcatatg gcgagaacaa ttcaattctc gacaattgcc acattcgagt
     6121 ggtgttcgcg acgaatgacg aacggacggc aaagcgcatt tccgatgcgc tcggaacggc
     6181 gaccgagcag cgctcaatgc gcaattacgc cggccatcgc ctcgctccct ggctggcgca
     6241 cgtcatggtc agccgacagg agaccgcaag gccgttgctg acccctgggg aggttatgca
     6301 acttccccaa acagacgaac tggtcctgct cgcaggaatg ccgccaataa gggcacggaa
     6361 gctccgctac ttcgaggatc agcggttcac ggatcgcttg cttgcggcac cctcacttga
     6421 cgaaggaact tatggggatc gcccgccaca gcgcgctcat gactgggttg ggcaagtttc
     6481 tcgagctgag cggatcgacg atcagaacga cgaatgcgtc gaaggcggag atgcgctcga
     6541 gcatcaagtt cacctaggtc gttcttcgga tcgcatgctc gcgccaccgc caatgccaat
     6601 cgacggaatc ggtctctggc cagataccga cgatgagcgg cctttgtcgg tgtcatttcc
     6661 cgagcttacg cgcgtcgttg ccgccgacgg tatcaatcag cagcacgatc gccagagcga
     6721 tctagtgccc agcttttagc gaaggagaac ccatgcctcg cttggtcgct acgcgtcgtc
     6781 aatttcggct tccaattgag ctcaacgatc gcctcaacga ggttagccgc aaaagcaaag
     6841 tgcctgctac ggtcatcatc gctgatgctc tccgttcctg gctgaatcga aaaggcgaag
     6901 atgagctcga actgcgcttt ggggcaagtc agaaccgaat cttgcggcag ctcggtcggc
     6961 tggaccgcaa ggacaatatc atcctcgaga cgctcgctct cttcattctc tacatgctca
     7021 cgatcaatgc acctatccca gagggcgacg atactgcgcg ggcgataggt cgtgatcggt
     7081 ttgaagcttt cgtcgaacgc gtcgggcgca agatcaggac cggccgcacc accttcctcc
     7141 acgatttcga tgaggacagc gacgggagcg agaaaaaatg agtgcgctgg agacagccga
     7201 tcgccaacgg tcgatgttgc gaactgccat gggtcctcac atcgccgcag ccttgcgcga
     7261 cagcgaagtg gtcgaagtga tggtcaaccc cgacggcgcg ctgcgtctcg accggcttgg
     7321 tgctggtcgt ctcgacaccg gcgtcgttct cgagccagac cagacggaga ggatcatacg
     7381 gctcgttgca agccacgcgc gcaccgaagt tcacgcatct gcgcccatag taagtgccga
     7441 gcttccgccg ctcactgacg gcattgccgg tgagcgattt gaaggtgtcc ttccgccggt
     7501 ctcaaccgcc ccatgttttg cgatccgcaa gccggcgcaa cgcatttacc ggcttgccga
     7561 ctatgttgcg gatggggtca tgagcgcctc cttcgcgcgg ctcctctcac agagcgtcct
     7621 tgaaaggcgc aacatccttg ttgctggcgg cactagctca ggcaagacga cgcttgccaa
     7681 cgcattactc gcggatctcg cggttcgcga cgaacgcgtg atcctcatcg aagacacgcg
     7741 tgaattgcag tgcgcagcct gcgacacggt tgctcttaga acgagaccgg gggtcgtcgg
     7801 catggcggag ctggtccgct caaccctccg gcttcgtcct gatcgcatca tcgtcgggga
     7861 agtgcggggg cgcgaagcgc tcgacatgct gaaggcctgg aatacaggcc atccgggcgg
     7921 cattgccacg gttcatgcca acagttcgcg tgccgcgctc tatcgtcttg aacagcttgt
     7981 tcaggaagcc gtgatcgctg tgccacggcg tctcatcgcc gaggcaatcg atctcattgt
     8041 tttcatttcc ggccgcggga ccgatcgccg cattgaggcg atcgattgcg tggaagggct
     8101 cgacgatcgc ggagactatg cgctccgacc gcacatttcc agcaacccgc aaaccatagg
     8161 agagtgacca tgggttgttc accgccgtgc ctgcgccggt gcgcagcgag ggcaagtttt
     8221 cttgtgacaa tcctgttgtc ggcgcgcgcg caggcggcgg gttctgggat gccgtgggaa
     8281 gaaccgctcc agaaggtgct ggattcggtc caagggccgg tcgccaagat cgttgccgtc
     8341 atcatcatta ttacgacggg cctgacgctt gccttcggtg aaactggcgg tggcttccgg
     8401 cgactgatcc agatcgtctt cggcctttcg attgcgttcg cggcctcgtc attcttcctg
     8461 agcttcttca gctttggcgg cggagcgatg gtgtcgtgaa aaattccgcc gatcatctcg
     8521 acggtttcga agttcccgtc catcgttcgc tcgtcgagcc gattctcctt ggaggagcgc
     8581 cgcgggcgct cgccatactg aacggaacga tcgcggccgc gctgggactt ggtctccagc
     8641 aatggctcgc cggcattgca atctgggcat taggacattc aaccgcagtc atcgcggcca
     8701 ggcgagaccc tgacttcgca cctgtgctgg ttcgtcatct tcgccagcga gccaacctct
     8761 catgctgaac ttggccgaat accgcgcaca ctcggatcgt ctcgccgatc accttccgtg
     8821 ggccgcgttg gtcggcccag gggtcgttct caacaaggac ggcagctttc agcgtagctt
     8881 cgccttccgg gggccggatc ttgaaagtgc aaccgaagct gagctcgtgt ctgtctcggc
     8941 gcgcgccaac aacatgctca agcgctttgg ctcgggctgg gctctgttct tcgaggcaga
     9001 acgcattgag gcactgggct atcccaaagc cgagtttcct gatccgggct catggctcgt
     9061 ggacgaagag cggaaagcga gcttcgaagg cggacgggaa catttcgaaa gccgctatta
     9121 tctcacgctg gtctggcttc caccggttga cgtggaagaa cgtgttgaac gagcgctcgt
     9181 tgagcgccgc gcaaaagccc aggagcgcga ctggcgtgaa gcgctccaat ctttcattgc
     9241 cgagactgac cgcgcactgg atctaatgtc aggctttatg cccgaagtgc gtgcgctcga
     9301 cgacgatgaa gcgctcacct tccttcatcg cgcggtatca ccagcgagcc atcgcgtggt
     9361 tgctccggaa acgcccattt atctcgatgc attgcttgcg gacacgccgc tttcgggcgg
     9421 gctcgagccg atgctcggcg atcttcactt gaggacgctt acggtcctcg gctttccatc
     9481 gctcagccgg ccgggcatcc tcgacacgct taatcatcag gattttagct atcggtgggt
     9541 gacgcgcttc attccgctcg accgaacgga ggccgcacgc gcgctcacta agctgcggcg
     9601 ccagtggttc aacaagcgca agtcggtgag cgctcttctc cgcgaggtca tgtacaacca
     9661 gccggtccaa ttgaccgaca gtgacgctga caacaaggtc gtggatgccg atgaggcatt
     9721 gcaggaactc ggcggcgatc acgtcgcctt tggttacctg acgaccacga tcacagtcgc
     9781 ggacgaagat ccatcgcgtg ccgatgagaa ggtgcgggcg attgaacgca tcgtcaatgg
     9841 tctcggcttc accatcaaac gcgagcgcat gaacgccgtt gaggcgtggc tctcaagtct
     9901 tcccgggcaa gtctatgcca acgttcgcca gccgctcgtg cacacactca atcttgcgca
     9961 cgtgatgccg ctgtcgtcga cgtgggcagg acctgcgcaa aacaatcatt tatctggacc
    10021 tccgttgctg tttgccgaaa cgagcgggtc cactccgttt cgtctctcaa cccacgtcgg
    10081 cgatgtcgga cacatgctca tcgtcggccc gaccggtgcc ggcaagtccg ttctgctcgc
    10141 tctcctggcg cttcagttcc gccggtaccc cggttcaaga attatcattt tcgataaggg
    10201 ctggtccgcg cgcacggcgg tccttgccat ggggggtgcg catcacgaac ttggagtaaa
    10261 taacgctacg ctcacgttcc agcccttgcg gcgcatcgat gaaccagccg agcgaagctg
    10321 ggctgcggac tggcttctgg ctctcatgga gcgacaaggc ctaagggtca cgccggacat
    10381 tggcgaagct ctttggtcag ccttgctcag tctcgcgtcc gctcctcccg aggagaggac
    10441 tctcacggga ttttcgctat tgctgcagtc gaatgcgctg aaatccgcac ttcagcccta
    10501 tacgcttgag gggccattcg gtccgctgtt ggacgcgacg aaagacgcgc tcgagcttgc
    10561 agacgtccat tgcttcgaga ccgagacact gatgcgacaa gcggactcgg tgtcgcccgt
    10621 gctttcctat ctctttcacc gcctcgaaga gagtttcgac ggtagcccaa cgctccttct
    10681 ccttgatgag gcctggctgt tcctcgatca cccgatcttc gcagcgcgga tccgcgagtg
    10741 gctgaaggta cttcgtaaga agaatgtggc cgtgatcttc gcgacacagt cgcttgccga
    10801 cattggctca agctcgattg caacggcgat catcgagagt tgcccgcagc gcattttcct
    10861 cgcgaatgat cgcgcaatcg agccgcagat tcgcgagatc tatgaccggt tcggccttaa
    10921 tccgcgccag gttgagctga tcgcaagagc gacacccaag cgtgactatt atctccagtc
    10981 acgaagcggc aacaggctgt tcgacctcgc tcttggacca atcgcactgg cgctttgtgg
    11041 tacgtccgac gctgcttcgc gccttctcgt cgatgagatc gtcaaacagc acggcaccga
    11101 ccggttcctt gcccatctgc tccaagttcg aggactgaac tgggccgccc cgctgctcga
    11161 ccagttcgct gcaaatcagg aaggagtgag gtcatgagag tgaaccgaca tgtgcgcacc
    11221 ctcgttgtag ttgcccttgg aacggcgatg agctttgccc ttccgcggtc gtccgcagcg
    11281 gcatccgggc tgccggtttt tgatgcggca aattacgcgc aaaatctgct ccaggcggca
    11341 cggacgctcg accagatcaa caaccaggtc cgttcgctgc agaatgaagc gtccatgctt
    11401 cagaacatgg cgcgcaatct ccaatccctc gattttccac agctcggaca gatgagcgcg
    11461 acgatgcaac agataacgca gctgatgagc aaggctgagg gaatcgagtt caaggtcgcc
    11521 ggcctcgacc agcaagtgcg aaccttgttt cccggcgctg ttcaagaggc ggttagctcc
    11581 gatcaacgca tcgccgctgc gcgcgctcgg ctcgaggccg caacggccgc ctatcgccag
    11641 gcgatgaccg tccaggcgag cgttgcggaa aatgttgaag ccgatgcatc catgcttggc
    11701 gagctgtcgg caagcagcga gggtgctatc ggagcgctcc aggttggcca ggcagcgaac
    11761 cagctcatgg cgctcagcat taagcagcag ctgcagcttc agaccttgat ggcgaccgag
    11821 ttcaggcagg cagcaatcga tcgcgcccgg cgcgctcagg ccgaagaaga tgggcgcgcg
    11881 gcaacgcgcc gtttcgtcga cggagcagcg gccaccaact gaaacgcgag cggcgcttcg
    11941 tgcccgccgc ttgcgctgcc gcggggcttt tcgagactcc cctagagaag tcccgcggta
    12001 cccgatcaca ccaattgaaa gccgcgcccc atgggtgact tgagcgtcgt cgaccggttc
    12061 atggctgcct tcatccagta catcgacagc ggatttggac tgcttcgtgg tgacgtttct
    12121 tttctgacga cgacactcgt cgggatcgac atcacgctcg cgggtctttt ctgggcgctc
    12181 ggcggcgaag acgacgtcat tccgaggttc ttgaagaaga tcctctacgt cggagcgttc
    12241 gcgctcatca ttggcagctt ctcgacgctt gcggacatca tcttccggtc gttcgccggt
    12301 ctcggaatta ccgcgggtgg aggagcgctc agcgccgacc agctgctgaa accgggcttc
    12361 atcgcgtcaa ctggctttga tgcagcaaag cctcttctgg accaggtcag cgagcttatc
    12421 ggcgtaacga gctttttcga gaatttcctg acgatcgttg tcttgatgac gagctggctc
    12481 ctcgtgatcc tcgccttctt catcctttca gttcagcttt tcatcacgat catcgaattc
    12541 aagctgacga cgcttgccgg attcgtcctg gtgccgttcg cgttgtggaa ccggaccgcc
    12601 ttcctcgccg aacgggtgct aggcaacgtg atttcggcag gtatcaaggt gatggtactt
    12661 gccgtcatcg tcggcatcgg ttcggggttc tttaccgagt tcaaggcggc agcggccggc
    12721 gaccagcccg acctcctggg ctcgatgagc ctcgttcttg cgagcctgtc cttgcttgga
    12781 cttggcattt ttggaccgac cattgcctca ggtctcgtcg cgggtgcacc ccagctcggc
    12841 gctggaagcg cggttgcgac aacggccgcc gcggttggag gcgtcgcaat tgccgggagt
    12901 accctcgcgg gtggtgctcg ggcaataggt ggaatgagcc ttggtgccgt ccgtgcgggc
    12961 gccgcgatgg gcgcggcggc atccacgtcc tatcgcctcg gccaggagac ttcagcgagc
    13021 cgcacgatcc gcgctggtgt tggcggggtg gcgcacgcgg cgggcgctca cctgcgccag
    13081 aagatagcgg gagcgggcgg aatctccgcc gcagtcgaac acggggagaa acgcgccctt
    13141 tttggtggat caaaaggagc ggcagcgacg tctcccggcg aggacgcggc gatggatggt
    13201 gctccagcct gggcgcgtcg gcttcgcgcg gaacagacgg cgcgacattt ccggcaagca
    13261 acgttccagg ccattcgcga gggcgaccgc ggcggaggag gtgccaatcc agacatcaaa
    13321 gagaaggagg aatagacgat gcgattccgg cgtgcagtcc agcggtacgg ccgaacgccc
    13381 gagccgcaaa cgccctatca gcgcgcgggc cagctgtggg acgagcggat tggctcagcg
    13441 cgcgtccagg cgcgaaactg gcggttcatg gctcttggcg ggctgatcct ctcgacgggc
    13501 ctttcggcag gcctcttgtg gcagtcgaac cagagccgtg ttacgcccta cgtcgtcgag
    13561 gtcgaccggc ttggcgaagc acgggcaata aaccccgcag ttcgcgatta tcagccaacc
    13621 gatccgcaga tttcctggca tcttgcgaag ttcatcagcg atgtgcggtc tgtctcgctc
    13681 gacccagtgg ttatgcggca gaattggctg tctgcctatg atttcgtcac cggccgcgga
    13741 gcgaagttcc tcgatgatta tgcgcggagc gcaaacccat tttcgcagct tggaatccgc
    13801 actgtgtcgg tccagccgac gagcatcgtt cgtgcttcgg accgttcgtt cgaggtcaag
    13861 tggacggaga gcgaatttga acgcggaaac tacgtcgcat cgagccggtg gactgcgatc
    13921 ctgacggtcg tgatgaaacc gccggtttcg gccgagacgc tgcggaagaa cccgctcggc
    13981 ctttacattg atgcgatcga ttggacgcgc gaactcgaga cgaacgcgcc accagtccgc
    14041 gagccgcctc aagtccgcgg caaccttccg cttggctcac cgctcgatcc ggatctcgcc
    14101 agtgcgcagc catcaaccct tccgatgagg aacagccaat gaccactgct ctacttctcg
    14161 ccgcactcgt cgcgacaagc tcatcgggcg agggaacagc cgaggtgagc acggatacca
    14221 ggctcgtggc accgctcttg agcgatgcgc cctctgcgca tcggcagccc ttgagtttgc
    14281 ataagcgagg cctcggccgt cgcgcggccg tgacgagcat cgaaaaggca aatcatgatg
    14341 cgctcgctga accagcggcg gcgacgaacc tcggcgctga acaaatctac ccctggagcg
    14401 aaggcgcaat ttttcccctc agcacggctc ccggtgaagt cacggacatc gctcttcagc
    14461 cgggcgagag cctggtttcc gtg
//
LOCUS       DASRBJ010000020         3694 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_407842,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000020 DASRBJ010000000
VERSION     DASRBJ010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3694
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407842"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..705
                     /locus_tag="VE968_00590"
     CDS             <1..705
                     /locus_tag="VE968_00590"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HZU50349.1"
                     /translation="LARWRSANRGLLEAESFIETAERTGLIGPLTFSILQQALCEART
                     WPAHFKLAVNVSPVQFREADLAEQILKILAATGFPANRLEIEITEGSLLEDREQVLTI
                     IRSLKNVGISISLDDFGTGYASLAQVNRLPLDRIKIDKSFITTIVKSEQTAAIVNTIA
                     GLGHNLDVPISAEGVESEQIRNALADFGCSEAQGWLFGRAISAEAVRNFLSMGGQATG
                     EPENPQPVRKPLGRRW"
     gene            complement(707..1261)
                     /locus_tag="VE968_00595"
     CDS             complement(707..1261)
                     /locus_tag="VE968_00595"
                     /inference="COORDINATES: protein motif:HMM:NF012415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HZU50350.1"
                     /translation="MTKHILLAAATIAAAAPAPAQPYLAGATGEIALRILTAHNVERA
                     RVGAPPLQWDSTLAAHAASYGPELARMRTLVHSPRAGRPGERENLAMAWHGTMSPEQL
                     VGMWSDEKRLLAPGSAIFPGASRTGRWEDIAHYTQMVWPTTTRVGCAIYSADWDYLIC
                     RYSPPGNIDGKPMFVAARAGRIAS"
     gene            complement(1336..1878)
                     /locus_tag="VE968_00600"
     CDS             complement(1336..1878)
                     /locus_tag="VE968_00600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50351.1"
                     /translation="MAYVRTAMAGWNDYFFMLGSAAAALIGLMFVVVSLTAGRARSEL
                     EAGKKLYTSPIVWHLCVVVVLSGATVAPSIDLRSLGIGTMVIAAASAAYCLYLTRGII
                     RAQLASNFSGYDAFWYGVAPAFIYAATALSGWGLLSGRSWAASAIAGAVMALLLVSIH
                     NEWDLVTYLAPDATSGSGSA"
     gene            complement(1968..2429)
                     /locus_tag="VE968_00605"
     CDS             complement(1968..2429)
                     /locus_tag="VE968_00605"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HZU50352.1"
                     /translation="MEEGPWYETVPIPALLRHARTTYGKAMRAALEAAGYDDIPANGL
                     YIIGGLSLSNDVPLRQLVKELGISKQGAGQLVDALVMRGYLARNVDARDRRQLIVALT
                     ERGRAAADVQREAREQIDATLRARVGDESVREARRALGALIEIDHEEGEST"
     gene            2791..>3694
                     /locus_tag="VE968_00610"
     CDS             2791..>3694
                     /locus_tag="VE968_00610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007688820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HZU50353.1"
                     /translation="MATATFPTRDDFAALLNKSLGGENETFEGKVVKGTVTGIENDMA
                     LIDVGLKSEGRVALREFAAPGQKPEIKVGDEVEVYVDRVENSAGEAMLSRDRARREAA
                     WDKLEGEFSAGNRVEGVIFGRVKGGFTVDLGGAVAFLPGSQVDIRPVRDVQPLMDIPQ
                     PFQILKMDRRRGNIVVSRRAILEETRAEQRSGLIQSLHEGQVIDGVVKNITDYGAFVD
                     LGGIDGLLHVTDVSYKRVNHPSEVLNIGDTVKVQIIRINRDTQRISLGMKQLESDPWE
                     GAAAKYAVGTTFRGRVTNITEYGAF"
BASE COUNT          738 a         1143 c         1106 g          707 t
ORIGIN      
        1 ctcgcccgct ggcgaagcgc gaaccgcgga ttgctcgagg ccgagtcctt catcgagact
       61 gccgagcgca ctggtctcat cggcccgctc acgttcagca tccttcagca ggcgctatgc
      121 gaagcgcgca cctggcctgc ccatttcaag ctcgccgtga acgtgtcgcc cgttcaattc
      181 cgtgaagcgg atcttgccga gcagatcctg aagatcctag cggcgaccgg ctttcccgcg
      241 aaccggctcg agatcgagat aacggaggga tcgctgctcg aggaccgcga gcaagtgctg
      301 acgatcatcc ggagcctcaa gaatgtcggg atcagtattt cgctcgatga cttcgggacg
      361 ggctacgcga gcctcgccca ggtaaaccgg ctgccactcg accgcatcaa gatcgacaag
      421 agcttcatca cgacgatcgt caagagcgaa cagacggcgg cgatcgtcaa tacgatcgcc
      481 ggcctcgggc acaacctcga cgtgcccatt tcggctgagg gcgttgaatc cgagcagatc
      541 cgtaatgctc ttgccgactt tggctgttcc gaagcccagg ggtggctgtt tggtcgcgcg
      601 atttccgccg aggcagtgcg caatttcctg tcgatgggcg gacaagcgac aggcgagccc
      661 gaaaacccgc agccggttcg aaagccgctc ggccgccgct ggtaagttag gaagcgattc
      721 ttccagcgcg tgcagcgacg aacatgggtt tgccgtcgat attgcccggc ggcgaatagc
      781 ggcagatgag ataatcccag tccgccgaat agatcgcaca gccgacccgt gtcgtcgttg
      841 gccagaccat ctgggtataa tgcgcaatat cttcccaccg gcctgttcgg ctcgctcccg
      901 ggaagatggc gcttccaggc gccaggagcc gcttctcgtc gctccacatt ccgacgagct
      961 gctcgggact catcgtgccg tgccaagcca ttgcgagatt ttcgcgttcg cccgggcgtc
     1021 ccgcacgcgg tgaatgaaca agcgtgcgca ttcgcgcgag ttctggtcca taggaagcgg
     1081 cgtgcgccgc gagggtcgag tcccattgaa gaggcggagc gccgaccctt gcccgctcca
     1141 cgttgtgggc agtaaggatg cgcagtgcga tttctcctgt tgcgcccgcg agatagggct
     1201 gcgctggcgc aggagcagca gccgcgatcg tcgctgctgc taacaagatg tgtttcgtca
     1261 tgctcctaaa gatgatcccc cagtcactaa gcccccgtca gcagtcatgg ttaacttagc
     1321 atgctgaact gatcctcaag ctgaaccgct tccactcgtc gcatccggcg cgagataggt
     1381 gacaaggtcc cactcgttgt gaatactgac cagcaagagt gccatgacgg cacccgcaat
     1441 cgcacttgcc gcccatgatc gcccacttag caggccccag ccggagagcg cggttgccgc
     1501 atagatgaat gctggagcaa cgccgtacca aaaggcatca tagccgctaa agttcgatgc
     1561 gagctgtgct cggatgatgc ccctcgtgag ataaagacag taagccgcgc ttgcggccgc
     1621 gatgaccatc gttccgatcc ctagtgacct cagatcgatc gatggggcca ccgtcgcgcc
     1681 gcttaggacg acgacgacac aaagatgcca tacaatcggg gacgtgtaga gcttcttgcc
     1741 ggcttcgagc tcgcttcgcg ctcggcccgc ggtcagcgac actaccacga acatcagccc
     1801 gataagcgcg gcagcggccg aaccgagcat gaagaaatag tcattccacc ccgccattgc
     1861 ggtccgaaca taagccaagc tcccaggagc gcaaagccat ggttccggcg aggcgaacgc
     1921 acaagctgct ctcgcgcgac cgtcatcgtc gcgacgagcg ctccaagcta ggtactttca
     1981 ccttcctcgt ggtcgatttc tatcaatgcg ccaagtgcac gacgtgcttc gcgcacgctt
     2041 tcgtcgccaa cacgtgcgcg aagtgtcgcg tcgatctgtt cgcgtgcttc ccgttggacg
     2101 tcggcagcag cgcgtccccg ctcggtcagg gcaacgatca gctggcggcg gtcacgcgcg
     2161 tcgacattgc gcgcgagata gccgcgcatc acaagcgcat cgaccagctg cccggcgcct
     2221 tgtttgctga ttccaagttc cttgacgagc tgccgaagcg gaacatcatt gctaagagaa
     2281 aggcctccaa tgatataaag cccgttggca ggaatgtcgt cgtaaccggc tgcctcaagc
     2341 gctgcgcgca tggccttccc gtaagttgtt cgcgcatggc gcaggagggc agggatgggc
     2401 accgtctcgt accagggacc ttcttccatg ttcgactcca gcggacgtta gtcaatctac
     2461 ttgactatca attattctta cttgttgttc atggcaatgg cgaagcttgc cccgtccttc
     2521 cctctaagct aagggcgccg acgtccgcag ggcccaagtc gctcgcggaa agcccgtccc
     2581 ttggcgagcg cgtacggtgt tccgggttgc cggcaccggc acgcgctttt ttccatgggc
     2641 cgctttcgca ggcacttgag atgtcctgaa ggacgccgtc acggcatggt gccgcgacgg
     2701 ccgtaggtac aaccaggtcc gcgtgcagaa gcttcgccat ggtggcgcgg cgcggcaagc
     2761 gaatttgtaa gactaggaca gacactcttt atggcaacag cgacattccc gacccgcgac
     2821 gacttcgcgg ccctcctcaa caagagcctc ggcggcgaga acgagacctt cgaaggcaag
     2881 gtggtgaagg gcaccgttac gggcatcgag aatgacatgg cgctgattga cgtcggcctg
     2941 aagagtgaag gccgagttgc gctccgcgag ttcgctgctc ctggacagaa gcccgaaatc
     3001 aaggtcggcg atgaagttga ggtctatgtc gatcgcgtcg agaattctgc cggcgaagcg
     3061 atgctgtcgc gtgaccgcgc gcgccgcgag gccgcctggg acaagctcga gggtgagttt
     3121 tcggccggca atcgcgtcga gggtgtgatt ttcgggcgag tcaaaggcgg tttcacggtc
     3181 gatcttggtg gcgccgtggc ctttcttccc ggaagccagg tcgatatccg cccggttcgc
     3241 gacgtccagc cgctcatgga cattcctcag ccattccaga tcctcaaaat ggatcggcga
     3301 cgcggcaata tcgtcgtttc gcggcgggca attctcgagg aaactcgcgc cgaacagcgc
     3361 tcgggcctca tccagtcgct ccacgaaggg caggttattg acggcgtcgt caagaacatc
     3421 accgattatg gggcgttcgt tgacctcggc ggaattgacg gcctccttca cgtcacggac
     3481 gtcagctaca agcgcgtcaa tcacccgtcc gaggtgctta acatcggcga cacggtgaag
     3541 gtgcagatca ttcgcatcaa tcgcgacacc cagcgcatca gtctcggcat gaagcagctc
     3601 gaaagcgatc cgtgggaagg cgcggctgcc aaatatgcgg tcggcactac tttccgcggc
     3661 cgcgtcacca acatcaccga atatggcgca ttcg
//
LOCUS       DASRBJ010000021         9201 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_408003,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000021 DASRBJ010000000
VERSION     DASRBJ010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 9201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9201
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408003"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1203
                     /locus_tag="VE968_00615"
     CDS             <1..1203
                     /locus_tag="VE968_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HZU50354.1"
                     /translation="VEGDSAGGSAKQGRNRHNQAILPLRGKLLNVERARFDRMLSSKE
                     IGTMIQALGAGIREDFDLAKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIEQG
                     HLFIAQPPLYKVSRGRSEVYLKDDAALDDYLEEAGLEGLVLETPEGPRTSKDLKTLVD
                     HARRMRTLMRYAPRRYDPALIEALAINGALKADLGPEGKTVAVAKVAEWLNAGDPEAA
                     WSGEVAQEGGYLLKRLWRGVTDAYIIEPSFLVSAEARKLDSLAQEQAAAYAKPSTLRT
                     LKKGAQVDLEPSVGSGEGEEAAEEAAADPKGKPVAITRPSELLDAVLAAGRKGLSIQR
                     YKGLGEMNAEQLWKTTLDPANRSLLRVEVSQADVADEIFTRLMGDVVEPRREFIQDNA
                     LSVANLDV"
     gene            1274..1999
                     /locus_tag="VE968_00620"
     CDS             1274..1999
                     /locus_tag="VE968_00620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016746199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HZU50355.1"
                     /translation="MHKAVGLDGRRDPHRVLKVLQEIDADVVALQEADKRIGGRGSTV
                     PHELIDSHGIYKPVHLGVRHKRVFDSARRHADRLLKVNTRNIGWHGNAILVKRHIGVL
                     DCAALDLPTLEPRGAVIAELLINEKPLRVVGMHLDLSGLWRKRQIRSILEAIARRPQK
                     MPTVLMGDTNEWRTAAGCLNELEPEFHVAPTGPSFHARHPIAQLDRIIVHRDLNVEAA
                     GVHMSPAARRASDHLPIWARVSA"
     gene            complement(1996..3450)
                     /gene="rpoN"
                     /locus_tag="VE968_00625"
     CDS             complement(1996..3450)
                     /gene="rpoN"
                     /locus_tag="VE968_00625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HZU50356.1"
                     /translation="MGLGPSLTIRQSQQLVLTPQLRQAIQLLQLSNLELDSFIAEELS
                     KNPLLESRSDESDDQSSIELTSDDPTQDEAPDDPGADDLITGQADDDRPLDVDWQAEA
                     LENDSFADVMTSAGSEEGFDFERVQYSAASLAEYLTDQLHGQAGEIGDLARVICEALD
                     ETGYLTVPLAQIAELTGAPLNLVEQALLLVQALDPPGVAARSLAECLALQAKAADRYD
                     PAMARLIDNLDLLSKGRTTDLKRICAVDDQDLADMIRELRAYDPKPGCRFSGSSAEAV
                     APDVFVRRTRSGFAVELNQATLPRLLVNRRYYQELRSGPQDKTSRAWLSECLQTANWL
                     VKALDQRARTIIKVVSEIVKRQQGFFEQGVSAMKPMTLRDVAEAIGMHESTVSRVTSN
                     KYLLCDRGLFELKYFFGSGVAAVGGEGAAAEAVKAGIRQLIEGETDVLSDDAIAALLK
                     QRGFDVARRTVVKYREAMGIGSSIQRRRLRRIAG"
     gene            complement(3460..4233)
                     /gene="lptB"
                     /locus_tag="VE968_00630"
     CDS             complement(3460..4233)
                     /gene="lptB"
                     /locus_tag="VE968_00630"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HZU50357.1"
                     /translation="MNETATFPRPAAEARRRDDGLEVRSIAKSYDKRSVLNDVSLDVH
                     RGEVVGLLGPNGAGKTTCFYSVMGLVKPDSGRIYLDGADITELPMYRRAILGLGYLPQ
                     ETSIFRGMTVEENILAVLEAAGLDKQTRRDRLEQLLGEFGLTALRDSPAMALSGGERR
                     RCEIARALAANPSIMLLDEPFAGIDPISIADIRELVRELKSRAIGVLITDHNVRETLD
                     IVDRACIIYDGQVLFAGTPEALVADQEVRRLYLGESFAL"
     gene            complement(4239..4817)
                     /locus_tag="VE968_00635"
     CDS             complement(4239..4817)
                     /locus_tag="VE968_00635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004208265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HZU50358.1"
                     /translation="MIIVRNTRIILAPILLAATAALGQVRQQSSVSALKGHNTNAPVD
                     VSADRIEVQDRADRALFTGNVHVVQAEMTLDTPRLTVAYSNTAGASSGSSPQIQRLDA
                     AGGVLVKSPTETAKGDFGIYDLNRKLITLIGNVQLNQQQNQVNGARLVIDLDSGRAVV
                     DGGPPGVNSSGGRVTGHFIVPQHQQTTQQQKQ"
     gene            complement(4814..5452)
                     /gene="lptC"
                     /locus_tag="VE968_00640"
     CDS             complement(4814..5452)
                     /gene="lptC"
                     /locus_tag="VE968_00640"
                     /inference="COORDINATES: protein motif:HMM:TIGR04409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HZU50359.1"
                     /translation="MAEADLPPPSAKPRWAAPGSGHDKLIRLSKVALPAAAGILLAIL
                     ALAPFQKKGDVSFILNKKKVQSAPEQLRVESARYTGTDKKGEQFVMTANRAVQPSSDT
                     RIVNIEGIFAKIDQQKGPMQIVADHGRYNVDTQRIAIDGPVKVTGADGFHLNTSNVLI
                     DLGDQQLASQGAAEGATNLGQFRANRIRADLSNHTVVLDGGARLKIVQGAVR"
     gene            complement(5445..6068)
                     /locus_tag="VE968_00645"
     CDS             complement(5445..6068)
                     /locus_tag="VE968_00645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008832481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HZU50360.1"
                     /translation="MAVHLHEEDLPADLRFADGPIAVDTEAMGLNPARDRLCVVQLSD
                     GTGDEHLVRFKRSSDYSAPNLKRLLADSDRLKLYHFARFDLGIMQAYLGIMAAPVYCT
                     RTASRLVRTYTDRHGLKELVKELLNIDLSKAQQTSDWGASELTDAQRDYAASDVRYLH
                     QLKKKLDERLAREERAELAQACFDFLPTRALLDLAGWPEQDIFAHDG"
     gene            6282..7073
                     /locus_tag="VE968_00650"
     CDS             6282..7073
                     /locus_tag="VE968_00650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HZU50361.1"
                     /translation="MGFDRGRKGDRGGRGRDKRDSFGEENFGGDFGGYQERGGYGGGR
                     GGYGGGGGGYGDRGGGYGGAGGGGYGGGGGGFRGGGGGGFRGGGGGGMPPQVVGEGKG
                     VVKFFNPQKGFGFIVRDDGGEDVFVHISAVEQAGLSDLADGQPLEFTLVDRGGRVSAT
                     NLRIEGEPMPVERSGGASSGGPAAGGPQRQLTGEKASGTVKFFNAMKGFGFIQRDDGQ
                     PDAFVHISAVERAGIPTLNEGDRLEFELEVDRRGKYAAVNLQPIS"
     gene            complement(7144..8691)
                     /locus_tag="VE968_00655"
     CDS             complement(7144..8691)
                     /locus_tag="VE968_00655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014076149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S10"
                     /protein_id="HZU50362.1"
                     /translation="MRSSLIAIALLLSAPATAQENKAADVPPRNMTATTPAPKPEQDT
                     AKASVAEDAQPVRRAIPFHGRTLAYTVTPGHLTLRNDEGEPIASMFYVAYTIPSADGR
                     PRPVTFLFNGGPGSSSMWLHLGSFGPMKIDASKPEMERPAPFRLVPNPDTLLDVSDLV
                     FIDAPTTGLSRALGKAETKDLVGVDHDLDMFTRTIERWLTVYGRWNSPKFIIGESYGT
                     LRAAGLSHMLADHGVQLNGVTLMSSVLSIGLLFSSYDQTYINSLPTYAATAWYHNRIA
                     NKPPLESFLQDARNFARGRYAVALQQGNNLSDQERRDVAVEAARFTGLTPEYFLANNL
                     RVEPSRFRKELLRSEGRIVGRLDTRFTGSDPDRAGDAAEYDPQDKSISGAWTAMINDY
                     LFRDLGYRTPLTYRPNNPAVFPLWDWKHSAGQGRAQMAADTSVDLAAAMRENPNLKLL
                     SLNGLFDLATPFAGAEYDIGHMELGPVERQNIRFAYYPSGHMIYIDPASAQKLKADLS
                     AFYASAM"
     gene            complement(8691..>9201)
                     /locus_tag="VE968_00660"
     CDS             complement(8691..>9201)
                     /locus_tag="VE968_00660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HZU50363.1"
                     /translation="RAGVDSIEHGTFIDEQGVRDMKARGTYYVATLMAFSGVANALGK
                     GILTPASEAKTRQTLSVWGKGLNLAYRNGVKIALGTDSAVAPHKLANHEVELMVTKGG
                     MTPRDALIAATKGGPDLMGLSAETGTLDPGKSADLIAVSGDPLVDPTAVQRVGFVMVE
                     GRPIPMKGL"
BASE COUNT         1774 a         2673 c         2825 g         1929 t
ORIGIN      
        1 gtcgagggcg actcggcggg cggctcagcc aagcagggcc gcaaccgcca taaccaggct
       61 attcttccgc ttcgcggcaa gctgttgaac gttgagcgag cccgattcga ccggatgctt
      121 tcctccaagg aaatcggaac aatgattcag gcgcttggcg ccggcatccg tgaagacttt
      181 gatcttgcga agctgcgcta ccacaagatc gtcatcatga ccgatgccga tgttgatggc
      241 gcacacatcc gaacattgct tctcaccttt ttctaccggc agatgccgca gctcatcgag
      301 cagggacatc tcttcattgc gcagcctccg ctttacaagg tcagccgcgg caggtctgaa
      361 gtctatctca aggacgatgc ggcgcttgat gattatctcg aagaggcagg gctcgagggg
      421 ctcgtactcg aaacgcccga agggccacgc acctcgaagg acctgaagac tctcgtcgac
      481 cacgctcggc ggatgcggac tctgatgcgg tatgcgccgc gccgatatga tccggcgctt
      541 atcgaggcgc tcgccatcaa cggagcactc aaggcggatc ttggtcccga ggggaagact
      601 gtcgccgttg ccaaggtggc tgagtggctc aatgcgggcg atccggaagc agcatggtcg
      661 ggtgaggtcg cccaagaagg cggttacctg ctgaagcggc tgtggcgcgg agttaccgat
      721 gcctacatta tcgaaccaag cttcctcgta tcggccgagg ctcgcaagct cgactcgcta
      781 gcgcaggaac aagccgccgc ttatgcgaag ccttcaacgt tgcgcacgct caagaagggc
      841 gcacaggtcg acctcgaacc gagcgtcggc agtggcgaag gcgaggaggc ggcggaggaa
      901 gccgcggcgg acccaaaggg caagccagtc gcgatcaccc gtccgtctga actgctcgat
      961 gcggttctcg cagcgggtcg caagggactg tccattcagc gctacaaggg tcttggagaa
     1021 atgaacgcgg agcagctttg gaagactact ctcgatcctg caaaccgttc gctgctccga
     1081 gtcgaggttt cgcaggccga tgtcgcggat gagatcttca cgcgcctcat gggtgatgtc
     1141 gtcgaaccgc gtcgcgagtt catccaggac aacgcgctga gcgtcgcgaa cctcgacgtc
     1201 taggaaccat tcaggccgaa cagctattgg cgttgctgtg agaagctccg ccattacgct
     1261 tgcgagctac aatatgcata aggcggtcgg actcgacggc cgccgcgacc cgcatcgcgt
     1321 ccttaaagtg ctccaggaga ttgatgcgga cgtcgttgct ctccaggagg ccgacaaacg
     1381 tatcggtggg cgcggttcaa ccgtgcccca cgagctcatc gacagccacg gaatctacaa
     1441 acccgttcac cttggtgtgc ggcacaagcg tgttttcgac agcgcacgcc gtcacgccga
     1501 tcgcttgttg aaggtgaata ccagaaatat cggctggcac ggaaacgcga tactcgtgaa
     1561 acggcacatc ggcgtgctcg actgtgcggc tcttgatctt cccactcttg aaccgcgcgg
     1621 tgccgtcatc gccgagctat taatcaacga aaagccgttg cgcgtggtag gtatgcacct
     1681 cgatttgtcg gggctgtggc gcaagcgaca gatacgctcg atcctcgagg ctattgctcg
     1741 gcggcctcag aagatgccga ctgtgctgat gggcgacacg aacgagtggc ggaccgccgc
     1801 cggctgcttg aacgagctcg agcccgaatt ccatgtcgcg cctacgggtc cgagttttca
     1861 cgcgcgccat ccgatcgcgc aactcgaccg aataatcgtg cacagggatc tcaacgtcga
     1921 ggcggctggc gtgcacatga gcccagcggc ccgacgcgcc tcagatcatc ttccgatctg
     1981 ggctcgcgta agcgcctagc ccgcgatcct gcgcaagcgc cggcgctgga tcgaagagcc
     2041 aattcccatc gcttcgcgat atttgaccac cgtccggcgt gcgacgtcga acccgcgctg
     2101 tttcagaagt gccgcaatcg cgtcgtcgct aagcacgtcg gtttcgcctt caataagctg
     2161 ccttatgccg gcctttactg cctctgccgc cgctccttcg ccacccacgg ccgctactcc
     2221 ggagccgaag aaatatttca gttcgaacaa gccacgatcg cagagcaaat atttgttgga
     2281 tgtgacccga ctaaccgttg attcatgcat gccaatcgct tcggcaacgt cgcgcaacgt
     2341 catcggcttc atcgcggaca cgccttgctc gaagaagccc tgctgccgtt taacgatctc
     2401 tgagacaacc ttgatgattg ttcttgcgcg ctgatcgagc gccttaacga gccagtttgc
     2461 cgtttggaga cactcgctca gccacgcacg cgacgtcttg tcctgaggcc cggaccttag
     2521 ttcctgataa taacggcgat tgaccagcag gcgcggtagc gttgcctggt tcagttcaac
     2581 ggcaaatcct gagcgtgttc gccgcacgaa cacatcgggt gccaccgctt cggcggagct
     2641 tcccgagaac cgacagccag gctttggatc ataagcgcga agttcgcgga tcatgtcggc
     2701 gagatcttga tcgtcgacgg cgcagatgcg cttaagatcc gttgtgcggc ctttcgagag
     2761 gaggtcgaga ttgtcgatga gccgcgccat cgccggatcg taacggtccg ccgccttggc
     2821 ctgcagcgcc aggcattcgg ccagtgatcg agcggcgacc ccgggcgggt ccaaagcctg
     2881 cacgagcaac agtgcctgct cgaccaagtt gagcggcgcg cccgttaatt ctgcaatctg
     2941 tgcaagtgga acagtaaggt aaccagtctc atcgagcgct tcgcagatca ctcgtgcaag
     3001 atcgccgatt tcaccagcct gcccgtgaag ctgatcggtg agatattcgg caagtgatgc
     3061 tgccgaatat tgaactcttt cgaaatcaaa gccttcttcg ctgccggctg acgtcatgac
     3121 atcggcgaaa ctgtcgtttt cgagcgcctc ggcttgccag tcaacgtcga gcggtcgatc
     3181 gtcatcggct tggccagtga tgaggtcgtc agcgccagga tcgtccggcg cttcatcctg
     3241 ggttgggtcg tcgctcgtga gttcgatcga cgattgatcg tcggactcgt ccgagcggga
     3301 ctcgagcaac gggtttttcg agagctcttc cgcgatgaac gagtcgagct ccaaattgct
     3361 cagctgcagt aattgtatcg cctgccgcag ctgcggcgtc agcaccagtt gctgcgattg
     3421 gcggatggtt agtgaggggc ccaggcccat gttgaccttc taaagcgcga agctctcgcc
     3481 gaggtagaga cgccggacct cttggtcggc aaccaaggct tcgggtgtac cggcgaacag
     3541 cacctgtcca tcatagatga tgcacgcacg atcgacgata tcgagcgtct cgcgcacgtt
     3601 atggtccgtg atgagaacac cgatcgcccg gcttttcaac tcgcggacga gttcgcgaat
     3661 atcggcaatt gaaatgggat cgatgccggc gaagggctcg tccagcagca tgatcgaagg
     3721 atttgcggca agagcgcgcg cgatttcgca gcgccgtctc tctcccccgg aaagcgccat
     3781 tgccggcgag tcgcgaagtg cggtgagacc gaattcacca agtagctgtt caagtcggtc
     3841 gcggcgcgtt tgcttgtcga gccccgctgc ctcaagcacg gcgaggatgt tctcctcgac
     3901 ggtcatgccg cggaaaatcg atgtttcctg cggaagatag ccaaggccga gaatggctcg
     3961 gcggtacatc ggaagttcgg tgatgtccgc gccatcgaga tagattcgcc cgctatcggg
     4021 cttgaccaga cccataacgg aatagaagca agtggtcttt ccagcgccat tggggccgag
     4081 tagcccaaca acctcacctc ggtgtacgtc gaggctgacg tcgttcagca ccgagcgctt
     4141 gtcataggat ttggcgatcg acctcacctc aagtccgtcg tcccgtctcc gcgcctcggc
     4201 ggcgggacgc ggaaaggtcg cggtctcgtt cattctcgtt attgcttctg ctgctgcgtt
     4261 gtttgttgat gctgcggaac gatgaagtgc cccgtcactc ttccgccgct cgaattaacg
     4321 cctggcggtc caccgtcgac gaccgcgcgg ccggagtcga ggtcgatgac aagccgcgct
     4381 ccgttgacct ggttctgttg ctggttgagc tggacattcc cgatgagcgt aatcagcttt
     4441 cggttaaggt cataaattcc aaagtcaccc tttgccgttt ccgtcgggct tttgaccaac
     4501 actcctcctg ccgcatcgag acgctggatt tgtgggctgc tgccactgct agcgccagct
     4561 gtgttcgaat aagcgaccgt cagtcgcggc gtgtcgagcg tcatctctgc ctggacgaca
     4621 tgaacattgc ctgtgaacag cgcccggtcc gcgcgatcct gaacttcgat gcgatcagcg
     4681 ctcacgtcca ccggcgcatt ggtattatgc cccttgaggg cggagactga ggattgctgg
     4741 cgtacttggc caagcgctgc agtcgctgca aggaggatcg gtgcaagtat gatgcgagta
     4801 ttgcgcacaa ttatcatctg accgcgcctt gcacgatttt caagcgagcc ccgccatcga
     4861 ggacgaccgt gtggttgctt aggtccgcgc ggatccggtt ggctcggaac tgcccaaggt
     4921 tagtcgcacc ttccgcggcc ccctggcttg cgagttgttg gtcgccaaga tcaataagca
     4981 cattgctagt gttgagatgg aatccgtccg cgccggtaac tttcactggc ccgtcgatgg
     5041 caatgcgctg cgtgtcgaca ttgtagcgac cgtgatcggc aacaatctgc atcggtccct
     5101 tctgctggtc gattttggcg aagataccct cgatgttgac tattcgcgtg tcggagctcg
     5161 gctgaacggc tcggttggca gtcattacga attgctcacc cttcttgtcg gtgccggtgt
     5221 agcgtgccga ctcgacacgc agctgctctg gtgcactttg cacctttttc ttgttgagaa
     5281 tgaaactgac gtcgcccttc ttctgaaacg gcgcgagcgc gagtatcgcc aacaggatac
     5341 ccgctgcagc cggaagggcg accttggaga ggcgaatgag cttatcatgc ccgcttcccg
     5401 gcgctgccca gcgcggtttt gctgacggcg gtggcagatc tgcttcagcc atcgtgcgca
     5461 aagatatcct gctcgggcca gcccgcgaga tcgagcagcg cacgcgtggg caggaaatcg
     5521 aaacaggcct gcgcaagttc cgctcgctcc tcgcgggcga gtcgctcgtc caatttcttt
     5581 ttcagctggt ggaggtaacg gacgtcgctt gctgcatagt cgcgctgtgc atcggtcagc
     5641 tccgacgctc cccagtcact tgtttgctgt gccttcgaca aatcgatgtt caacaattct
     5701 ttgaccaact ccttcagtcc gtgtcggtcg gtgtaagtgc gaaccagccg cgaagcagtg
     5761 cgcgtgcaat atacgggcgc ggccatgatg ccgagatagg cttgcatgat gccaaggtcg
     5821 aaccttgcga aatggtagag cttaagccgg tccgaatcgg cgaggagccg cttgagattg
     5881 ggagctgaat aatcacttga acgcttgaat cgcacgaggt gctcgtcacc ggttccgtcg
     5941 gacaattgta caacgcacag ccggtcacgg gcaggattga ggcccatcgc ctcggtatcc
     6001 accgcgatcg ggccgtcggc gaatcggagg tctgcgggaa ggtcctcttc atgcaaatga
     6061 acagccatta ttactcctcg atcaagcgtt gagaaggctt tagtccgcct gtgggctcac
     6121 ttgccagccc tgtagccaac tgagtcacta gagccgcacg gttttttcct gtaaggggct
     6181 gaacggtgcg tgagtggatt acgcgccatg accggttgcg ccatgtggcc cgagcgcgtt
     6241 ggtttgtggg gtaggcgggt ctttttaagt tcggacggtt catgggtttc gatagagggc
     6301 gcaaggggga ccgcggtggg cgcggccgcg acaagcgcga tagtttcggc gaagaaaatt
     6361 tcggcggaga ttttggtggt taccaggagc gcggcggcta tggcggcggc cgcggtggct
     6421 acggcggtgg cggcggcggt tatggtgacc gcggcggcgg ttacggtggt gcaggcggcg
     6481 gtggctacgg cggcggcggt ggcggtttcc gtggtggtgg cggcggtggt ttccgcggcg
     6541 gcggtggcgg cggaatgcct cctcaggttg tcggtgaagg caaaggcgtc gtcaaattct
     6601 tcaaccctca aaagggcttc ggattcatcg ttcgggacga tggcggcgag gatgtgttcg
     6661 tccacatctc ggcggtggaa caggcgggtc tcagcgacct tgcggacggc caacctctcg
     6721 aattcacgct cgtcgatcgc ggcggtcgcg tgtcggccac gaacctgcga atcgaaggtg
     6781 agccgatgcc ggtcgagcgc agtggcggcg ctagcagtgg tggccccgcc gcgggcggcc
     6841 cacagcggca gctgaccggc gaaaaggcaa gcggtaccgt caagttcttc aatgcgatga
     6901 agggttttgg attcatccaa cgagatgatg gtcagcccga cgcttttgtc cacatttctg
     6961 cagtcgaacg cgccggaatt ccgacgctga acgagggtga ccggctcgag ttcgagctgg
     7021 aagtggaccg gcgcggcaaa tatgcggctg ttaaccttca gccgataagc taggctctag
     7081 gaaaagaata ccgagggggc gaagggccgg aggatttcga tccgccggcc cttttccttt
     7141 ttgctacatt gcgcttgcgt agaaggccga aagatccgcc ttcagcttct gagccgaggc
     7201 tggatcaatg tagatcatgt gccccgacgg gtagtaagcg aagcggatgt tctggcgctc
     7261 gaccggtccc agttccatgt ggccgatgtc atattccgcg ccggcaaacg gcgttgcgag
     7321 atcgaacagt ccatttaacg acaacagttt cagattgggg ttttcgcgca tcgctgcggc
     7381 aagatcgacg ctcgtgtccg ccgccatctg tgcacggcct tggccagccg agtgcttcca
     7441 gtcccacaaa ggaaaaactg ctggattgtt cggccgatag gtgagcggcg tccgatagcc
     7501 gagatcacgg aacagataat cattgatcat cgctgtccag gctccggata tcgatttgtc
     7561 ctgcggatcg tattcggcgg cgtcaccagc acgatcagga tcgctgccgg tgaaccgtgt
     7621 gtcgagccgt ccaacgatgc ggccttcgct gcgcagcaat tccttccgaa agcggctcgg
     7681 ctccacgcgc aaattgtttg caaggaaata ttcaggcgtc agcccggtaa aacgagctgc
     7741 ttcgacggcg acgtcccggc gctcctggtc gctgaggttg ttgccttgct gcagtgcaac
     7801 tgcgtagcgg ccgcgcgcga aattgcgcgc atcttgcaag aagctctcga gtggcggctt
     7861 gtttgcgatc ctgttgtgat accacgccgt cgccgcgtac gttggcaggc tgttgatata
     7921 ggtctgatca tagctgctaa agagcagtcc aatactcaga accgacgaca tgagtgttac
     7981 gccattaagc tgaacgccgt gatcagcgag catgtgactg agacccgcag cgcgaagggt
     8041 cccatagctt tcaccgatga tgaacttggg actgttccag cgaccgtaaa cggtaagcca
     8101 gcgttcgatc gtgcgcgtga acatgtcgag gtcgtgatcg actccgacga gatccttcgt
     8161 ctcggccttg ccgagtgccc gcgagaggcc ggtggtcggc gcgtcgatga acacaaggtc
     8221 acttacatca agcaatgtat cgggattggg cactaggcgg aatggtgcgg ggcgttccat
     8281 ctcaggcttg gaggcgtcga tcttcattgg accgaaggat ccgaggtgca accacatgga
     8341 cgacgagccc ggtccgccat tgaatagaaa ggtaaccggc cgcggtcggc cgtccgccga
     8401 cgggatcgtg tatgcaacgt agaacatact ggcgattggc tcgccctcat cgttgcgcag
     8461 cgtcaggtga ccgggcgtca ccgtgtaggc gagcgttctc ccatggaatg gaatggcgcg
     8521 cctgaccggc tgcgcatcct ccgcgacact cgccttggcc gtatcctgct ccggctttgg
     8581 ggccggagtt gtggcagtca tattcctcgg cggaacgtcg gcagccttgt tttcctgcgc
     8641 cgtggccggc gcgctcaata gtagtgcaat cgcaatcaat gaggaacgca tcacagacct
     8701 ttcatcggaa tgggtcgacc ttcgaccata acgaagccga cgcgctgcac agcggtcgga
     8761 tcaacgagtg gatcaccgga gaccgcaatt aggtcggcgg atttgcccgg atcaagcgtt
     8821 cctgtttccg ccgacagacc catcaagtca ggaccaccct tagtggcggc gatcagcgca
     8881 tcgcgtggcg tcattccacc cttcgtcacc atcagctcga cttcatggtt ggcaagctta
     8941 tggggcgcga cggcgctgtc ggtcccaaga gcgatcttca cgccgttgcg gtatgcgaga
     9001 ttgaggcctt taccccatac gctgagtgtc tggcgcgtct tggcctcgct cgccggcgtc
     9061 aggatgccct tgccgagcgc attggctacg ccgctgaacg ccatcagcgt cgccacataa
     9121 taggtgccgc gagccttcat gtcgcggaca ccctgctcgt caatgaacgt accatgctcg
     9181 atcgagtcga cgccggcgcg c
//
LOCUS       DASRBJ010000022         7958 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_207782,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000022 DASRBJ010000000
VERSION     DASRBJ010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7958
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207782"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..1550)
                     /gene="gatB"
                     /locus_tag="VE968_00665"
     CDS             complement(60..1550)
                     /gene="gatB"
                     /locus_tag="VE968_00665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014076375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HZU50364.1"
                     /translation="MVVAVAELAAPFRIKGETGDWEVVVGLEVHAQIVSNAKLFSGAA
                     TAFGAEPNTQVSLIDAAMPGMLPVPNSACIRQAVRTGIALDAKINRWSRFDRKNYFYA
                     DLPQGYQISQLYHPLVGEGEIEILADEKDLSTAKRIGIERIHVEQDAGKLMHDQHPTL
                     SYVDLNRCGVALMEIVSRPDMRSPAEAGAYLRKLRSILRYVGSCDGNMEEGSMRADVN
                     VSVRKPGAGFGTRTETKNVNSVRFVMAVVEHEAKRQVELLESGGEVAQETRLFDPDKG
                     VTRSLRSKEDAHDYRYFPDPDLLPLELDDGFLEECRSSLPELPDAKQKRYQQLGITPY
                     NASVLTAEVETALWFDALLNAGAEPKQASNWVVAELFGALNRRGESIDHSPVTPAAAS
                     ELLGLVANGTISGTIAKQVFEIMLESGEGAAHIVESRGLKQTSDTGAIDAEIDKILAA
                     NADKVEQYKGGKQQLFGFFVGQTMKAMAGKANPQVVNERLREKLGA"
     gene            complement(1541..3013)
                     /gene="gatA"
                     /locus_tag="VE968_00670"
     CDS             complement(1541..3013)
                     /gene="gatA"
                     /locus_tag="VE968_00670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007686468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HZU50365.1"
                     /translation="MSDLNSKTIAELRDGFRAGHFSAREIAENFNAAVAGARTLNAYT
                     LETPDDALAAADTADQARASGDLLPLSGIPIGIKDLFATRGVETTAGSKILAGFRPPY
                     ESTVTAKLRQAGAGMLGKLNMDEFAMGSSNETSAHGPVISPWRRKGSNVGLTPGGSSG
                     GSAAAVAAQIAPGATGTDTGGSIRQPAAFAGIAGIKPTYGRCSRWGVVAFASSLDQAG
                     PMAKTVRDCAILLEAMAGFDPKDSTSLDAPVPLWEANLSSDLRGKRVGIPREYRIEGV
                     PDDVNRLWERGIEWLKDAGAVPVEISLPHTRYALPAYYIIAPAEASSNLARYDGVRYG
                     LRERGPGGLDGMYSATREAGFGAEVKRRIMIGTYVLSAGFYDAYFTKAQKVRALIKQD
                     FRKAFELCDVILTPTTPSAAFGIGETTDPLAMYLNDVFAVPASLAGLPAMSVPGACDK
                     EGLPLGLHLIANELDEQMVLNAGLAIEERAGFTARPEKWW"
     gene            complement(3018..3305)
                     /gene="gatC"
                     /locus_tag="VE968_00675"
     CDS             complement(3018..3305)
                     /gene="gatC"
                     /locus_tag="VE968_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HZU50366.1"
                     /translation="MSVTSEQVRHIAKLARIGMSEAEIEALVPELNNILGWVEQLSEV
                     NTEGVEPLTAVIDQKLRLRDDIVTEGEIRNEVLANAPEAQHGFFAVPKVIE"
     gene            3518..3949
                     /locus_tag="VE968_00680"
     CDS             3518..3949
                     /locus_tag="VE968_00680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50367.1"
                     /translation="MKSIYPVAGLLIAASTFALAQTSHTATKPPASSAPAASAPAAKA
                     APTTPPPRTDANCLLVSNIFAQQSTDPAQKTHAGNVLFYYFGRLDARTNEAQMKAELK
                     QAGSFPFTGATAAALMNNCVANMQARAQVLQNAQQQVEQGK"
     gene            complement(3955..4326)
                     /locus_tag="VE968_00685"
     CDS             complement(3955..4326)
                     /locus_tag="VE968_00685"
                     /inference="COORDINATES: protein motif:HMM:NF016045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity iron permease family protein"
                     /protein_id="HZU50368.1"
                     /translation="MNSWFQRVTTVLARFIGRPLMLCICLLLALASFAAYASRSDLAI
                     NGTNLAINVLTLLFLPILQATQNRDGAALQAKLDELIRANKEARNDLIGIEDKAETEI
                     EQLRPAPVNVTDPHPEQESVA"
     gene            4438..5541
                     /locus_tag="VE968_00690"
     CDS             4438..5541
                     /locus_tag="VE968_00690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008601895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3089 domain-containing protein"
                     /protein_id="HZU50369.1"
                     /translation="MYARRFLAVIFILTLLAAVGAFAIYEWGTRLLIRQAVPQGHFHA
                     PVDNGPDYRIVSNWLARPGLLNDPSHWLPAGVPGNPSGKAAIFYIHPTTYLERDRWNA
                     PIEAGGETEFRSQVFVQSQASAFNEAGQIWAPRYRQAAYGAFLLKSEDAQKALDLAFN
                     DVASAFDEFVRETGDQPIILAGHSQGALHLERLLRERIAGKPLAHRIVAAYVVGWPIS
                     TKSDLPALGLPACSNAAQTGCILSWMTFGDPANPDFIFDEWSKTRGFNGGDRAQRDVL
                     CVNPITGTLNGAAPPEANPGTLIPSADLRSATMQPGIVGAHCQQVLLLLDGTIPPIGP
                     YVLPGNNFHVYDYALFWGAVRQDANRRLASWHS"
     gene            5541..6011
                     /gene="ruvX"
                     /locus_tag="VE968_00695"
     CDS             5541..6011
                     /gene="ruvX"
                     /locus_tag="VE968_00695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003043597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HZU50370.1"
                     /translation="MTSDTRTFHRLLHGSGRLAGLDVGTKTIGVALCDAEWNFAGPRE
                     TIRRKKFTQDLAALDIVVRQDKIAGLVVGLPLNMDGTDSPRTQSVRAFARNLAPLQLP
                     VLLWDERWSTQAVERAMIEADVSRARRAEKVDALAAAHILQGAIDALAKLPGQQ"
     gene            6023..6928
                     /locus_tag="VE968_00700"
     CDS             6023..6928
                     /locus_tag="VE968_00700"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007684016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HZU50371.1"
                     /translation="MDILSIDSLSDAQIGDILERSELYFSGNRGRRLTERLHGRIIFN
                     VFYENSTRTAMSFATAAHRLGASTIALSVERSSVAKGESLEDTARTLNAMRPDALVIR
                     HRENGAPASVARILEAPVLNAGDGTNEHPTQALLDAATIRQRLGHIAGLKVAICGDIR
                     HSRVARSNAKLLPRLGAEVRLAGPPELLPAETPQLSVDEAIADADVVMMLRVQRERLE
                     TDLGDAPGEYLAAYGLTRERLATASPEAVVMHPGPMNRGVEIDGDIADDPRCSLITLQ
                     VEMGVAVRMACLELVVANSVSASRY"
     gene            complement(6909..>7958)
                     /locus_tag="VE968_00705"
     CDS             complement(6909..>7958)
                     /locus_tag="VE968_00705"
                     /inference="COORDINATES: protein motif:HMM:NF016895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HZU50372.1"
                     /translation="QAQVILRLALVEIAQGKDNRAVAMLRDAKGLLDASDYGLALALA
                     GRANEAISILEPAARQSNDPTVRQNLALAQALAGNWQEARIIAGQDVPANQLDARMQQ
                     WMQIAKPKYAADQVAAVVGVSPAAIDPGQPVQLALDKSDIPEAHTPSTAPVEVAAVHA
                     PAPALVALSRPAVAASAPAKPSFVAAVAPVSETAPLPVAAVTPVSQVKPTLATLTASA
                     VAVAIADAKAVLASITPHAMPAKRPIPHVARPATVTDASKSHAVVQLGAYASPDRVLA
                     AWNGESRKFGALKAYAPMSARFASPKGTFYRLSVRGFNSIGQAKALCTSLRHSGGACF
                     VRYVAGDAPVNIAMR"
BASE COUNT         1574 a         2456 c         2354 g         1574 t
ORIGIN      
        1 ccggggacgt ttttggcaag agggcatccg gcggtcggcc gcgcgagcaa gcaagctgcc
       61 taagcgccga gcttttcccg cagccgctcg ttaacgacct gcggattggc tttgccagcc
      121 attgccttca ttgtctgacc aacgaagaat ccgaacaatt gctgctttcc gcccttgtac
      181 tgttcgacct tgtccgcgtt ggcggcgagg atcttatcga tctccgcgtc aatggcaccg
      241 gtgtcgctgg tctgcttcag cccgcggctc tcaacgatgt gagcggcgcc ctcgccgctt
      301 tcgagcatga tctcgaacac ctgcttggcg atcgtgccgc tgattgtccc attggcaacg
      361 agcccgagca attccgaagc tgcggccgga gtgactggac tatggtcaat actctcaccc
      421 cggcggttca gcgctccgaa aagttcggca acgacccagt ttgacgcctg tttgggttca
      481 gctccggcgt tgagaagcgc atcaaaccac agcgcagttt cgacctccgc ggttaaaact
      541 gaagcattgt aaggcgttat gccaagctgt tggtagcgtt tctgcttcgc gtccggaagt
      601 tcgggaagcg aggaacggca ttcctcgagg aagccgtcat caagctcaag cggcaacagg
      661 tcgggatcgg gaaaataacg gtaatcgtga gcatcttcct tcgaacggag cgaccgagta
      721 actcccttgt cggggtcgaa tagccttgtc tcctgtgcga cttcgccacc gctttccagt
      781 aactcgacct gccgcttagc ctcgtgctcg accacggcca tcacgaaccg aaccgagttt
      841 acattcttcg tttcggtccg agttccgaag cccgctccag gcttgcggac gctgacgtta
      901 acgtcggccc gcatcgaacc ttcttccata ttgccatcgc acgagccgac gtagcgcagg
      961 atcgatcgca gcttcctcaa atacgcgcct gcctcggcag gcgaacgcat gtccggacga
     1021 gacacgatct ccatcagcgc gacaccgcag cgattaagat cgacatagct gagggttgga
     1081 tgctgatcgt gcatcagctt tcccgcatcc tgctcgacgt ggatccgctc gatgccgatg
     1141 cgcttggccg tactcaggtc cttctcgtcg gcaagaatct cgatctcgcc ctcacccacg
     1201 agcgggtgat aaagctggct gatctgatag ccctgcggaa ggtccgcgta gaaataattc
     1261 ttccgatcga aacggctcca gcgattgatc ttggcatcga gcgcgatgcc ggtgcgaacg
     1321 gcctggcgga tacacgcgct atttggcact gggagcattc ccggcattgc cgcgtcgatg
     1381 aggctgactt gcgtgttggg ctcggcgcca aaagcggtcg ctgccccaga aaaaagcttt
     1441 gcgttggaga cgatttgggc atggacctcg agcccgacga ccacctccca gtcgccggtc
     1501 tcgcccttga tgcggaaagg tgctgcgagc tcagccacgg ctaccaccat ttctccggtc
     1561 gcgcagtgaa gcccgcgcgc tcttcgatcg caagaccggc attaagcacc atctgctcgt
     1621 cgagttcgtt ggcgatgagg tgcaatccaa gaggaaggcc ttccttgtca caagcgcccg
     1681 gtacggacat tgccgggaga cccgcaaggc ttgcgggaac ggcaaataca tcattcagat
     1741 acattgcgag tgggtccgtc gtttcgccga ttccaaacgc cgccgagggg gtcgtcggcg
     1801 tcaggatcac atcgcagagt tcgaaggctt tccggaagtc ctgcttgatc aaggcgcgga
     1861 ctttctgcgc cttggtgaaa taggcatcgt aaaatcccgc cgagaggacg taggtgccga
     1921 tcatgatccg gcgcttcacc tcggcaccga agccggcctc gcgagtcgcc gaatacatgc
     1981 catcgagccc accaggtccg cgttcgcgaa gcccgtatcg cacgccatcg tagcgcgcga
     2041 ggttggacga agcctctgcg ggcgcaatga tatagtaagc gggaagtgcg taccgcgtgt
     2101 gtggaaggct gatctcgaca gggacagcgc cggcgtcctt cagccactcg atgccacgct
     2161 cccacaagcg attgacgtcg tccgggacgc cctcaatgcg atattccctc ggaataccga
     2221 cgcgcttccc cctgagatcg ctcgaaaggt tcgcttccca gagcggaacg ggcgcgtcga
     2281 gcgaagtgga atccttcggg tcgaagccag ccatcgcctc gagcaggatc gcgcaatcgc
     2341 gaaccgtctt tgccattggt cccgcctggt cgagcgaact tgcaaaggca acgacgcccc
     2401 aacgcgagca gcgcccgtag gttggcttga tccccgcgat acccgcgaac gccgctggct
     2461 gacgaatgga gcctcccgtg tccgttccag tcgcccctgg tgcgatttgc gccgcaacgg
     2521 ccgcggcgga cccgcctgac gagccacccg gcgtcaggcc aacattgctt cctttgcggc
     2581 gccatgggct gattacagga ccatgagcac tcgtctcatt cgacgaaccc atggcgaact
     2641 cgtccatgtt gagcttgccc agcattcccg cacctgcctg gcgtagcttc gcagtcaccg
     2701 tgctctcgta gggcggtcgg aatcccgcga gaatcttgct tccagcggtc gtttcgacgc
     2761 cgcgcgttgc gaacagatcc ttgatgccga tcggaattcc ggaaagcggc aacaagtcgc
     2821 cggacgccct cgcttggtct gctgtgtcag ccgcggcaag cgcatcgtcg ggcgtttcca
     2881 aggtgtaggc attcagtgtt cgtgcaccag ctactgccgc gttgaagttt tcggcaatct
     2941 cgcgcgcact aaaatggccc gcgcgaaacc cgtcacgcag ttcagcaatc gttttcgagt
     3001 tgagatcact cacggcttca ctcaatgacc ttggggaccg caaagaaccc gtgttgcgct
     3061 tccggcgcat ttgcgagcac ctcattgcgg atctcgccct cggtgacaat gtcgtcgcgt
     3121 aatcgcagct tctggtcgat gaccgcggtc aagggttcaa cgccctcggt attaacctcg
     3181 ctcagttgct cgacccatcc taagatgttg ttgagttcgg gaaccagcgc ctcgatctcg
     3241 gcttcactca tcccaattcg cgcaagcttc gcgatgtggc ggacctgttc ggaagtgaca
     3301 gacattgcgc gggcgccgat agccgccgcc cgagtgagga gcaagcggga gaggacgcgt
     3361 cattcgtgat cggcgtagct tagtccgatg cggcacgatg catgttttcg accgaaggta
     3421 ggcctacggt tcttaaatgc ctcggatgcc gattgcgcgt atagcacgag cactaatatg
     3481 gaagtgtcca atcattaccc cccaacggag cactcacatg aagtcaatct atccagttgc
     3541 cgggctgctc attgcggctt cgaccttcgc tttggcccaa acgtcgcaca ccgcgactaa
     3601 accgccggcc tcgagcgcgc ccgccgcgag cgcacccgcc gcaaaggccg ctccgacaac
     3661 gccgccacca agaaccgacg caaattgcct gctcgtgagc aacatcttcg cccagcaatc
     3721 aaccgatccc gcgcagaaga ctcatgcggg caatgtactc ttctattatt ttggtcgcct
     3781 cgatgcccgt accaacgaag cgcaaatgaa ggcggaattg aagcaggcgg gttcctttcc
     3841 gttcacggga gcgaccgcgg cggcgctcat gaacaattgc gtcgccaata tgcaagctcg
     3901 agcgcaggtg ctgcaaaacg cccagcaaca ggttgagcag ggcaaataag gccatcaggc
     3961 gaccgactct tgctccgggt gagggtcggt cacattgacc ggcgcaggcc gcaattgttc
     4021 gatttccgtc tccgccttgt cttcgatccc aatgaggtcg ttccgtgctt ccttgttggc
     4081 cctgatcagt tcgtcgagct tggcctggag tgctgcgcca tcacggttct gggtcgcctg
     4141 caggatcggc aggaagagca aagtaaggac gttgattgca agattggtgc cgttgatcgc
     4201 aagatcgctg cggcttgcgt aggccgcgaa ggaggcgagt gcgagaagaa ggcaaatgca
     4261 caacatcagc ggtcggccga tgaaacgtgc aagcacggtc gttacccgtt gaaaccacga
     4321 attcacgcgc aactcccacc acaaaaagca tgaagcagaa cgcgttgcac ctcttggcgc
     4381 tgcaactgct gttgcctctc cttgctcgct tggctgccct cccctaaccg cccgcccatg
     4441 tacgcgcggc gattcctagc agtgatcttc atactgacac tactcgccgc ggttggcgcc
     4501 tttgccatct acgagtgggg aacaaggttg ctcatccggc aagcggttcc acaagggcat
     4561 ttccacgcac ccgtcgataa cggcccggat tacaggatag tctcgaattg gctcgcccga
     4621 ccgggcctcc tcaacgatcc gtcacattgg cttcccgcgg gtgttcccgg aaatccctcg
     4681 gggaaggcgg cgattttcta cattcacccg acaacgtatc tcgaacgcga ccgctggaat
     4741 gccccgatcg aagccggcgg tgaaacagaa ttccgcagcc aagtcttcgt ccagagtcag
     4801 gcaagtgcgt tcaatgaggc gggacagatc tgggcaccgc gctatcgcca agccgcctac
     4861 ggcgcattcc tgctgaaaag cgaagatgcc caaaaggcat tggatcttgc gttcaacgac
     4921 gtcgccagcg cttttgacga gtttgttagg gagactgggg atcagccgat catccttgcc
     4981 gggcatagtc agggcgcctt gcacctggag cggcttcttc gcgaacgaat tgctggcaag
     5041 ccgctcgcac atcggatcgt cgctgcctat gtcgtcggct ggccgatcag caccaagtcc
     5101 gaccttcccg cgctcgggct tccggcttgt tcgaacgctg ctcaaaccgg ctgcattctg
     5161 tcctggatga cttttggtga tccggcgaat cccgatttca ttttcgacga gtggagcaaa
     5221 acgcgcggtt tcaacggagg tgatcgcgcg cagcgcgatg tcctgtgtgt caatccaatc
     5281 acaggaacat tgaacggagc ggcaccaccg gaggcaaacc ccggaacgct tattccgagt
     5341 gccgatctac gttcggcaac aatgcagccg ggcatagtcg gcgcgcactg ccagcaggtt
     5401 ctgctccttc ttgatgggac gataccgccg atcggaccct atgtcctgcc cggcaataac
     5461 ttccacgtct atgactatgc tctgttctgg ggagcggtac gccaggatgc gaacagaagg
     5521 cttgcgtcgt ggcattcctg atgacctccg acacgcgcac gttccatcgg ctgctgcacg
     5581 gcagcggcag gcttgccggc ttggatgtgg gcaccaagac aatcggagtt gcactatgcg
     5641 acgcggagtg gaacttcgcc ggaccacgcg agacaattcg tcgcaagaaa ttcacgcagg
     5701 atctcgcggc tctcgatatt gtcgtgcgcc aagacaaaat cgctggtctc gtcgttggac
     5761 tgccactgaa catggacggg acggatagcc cgagaacgca gtccgtgcgg gcgttcgcgc
     5821 gcaacctagc gccacttcaa ctcccggtgc tgctatggga cgagcgctgg tcgacgcagg
     5881 cggtggaacg ggcgatgatc gaggccgacg tgagccgggc gcgacgcgcc gagaaagtcg
     5941 atgcgctcgc tgcagcgcac atccttcagg gcgcgattga tgctctggcc aagctccctg
     6001 gtcaacaata agcagggccg ccgtggacat tctgtcgatc gactctctta gcgatgcgca
     6061 gatcggggac atactcgagc gctcggagct ctatttctcg ggcaatcgcg gacgtcggct
     6121 aaccgaacgc ctacacgggc gcatcatctt caacgtgttc tacgagaact cgacaaggac
     6181 ggcgatgtcg tttgccaccg ccgcacaccg cctcggcgcc tcgactatcg ctttgtccgt
     6241 cgaacgcagc tccgtggcaa aaggcgagag cctcgaggat accgctcgca cgctgaacgc
     6301 aatgcggccc gatgcgctcg taatccggca ccgcgagaac ggcgcaccgg ccagtgtcgc
     6361 gcgtattctg gaagcgccgg tgctgaatgc gggcgacggg accaacgaac acccgacaca
     6421 agcacttctc gatgcagcaa cgatccggca gcgtctcggg catatcgcgg ggctgaaggt
     6481 cgcgatctgc ggagatatcc ggcacagccg cgtcgcccgt tctaatgcca agctgttgcc
     6541 gagactgggt gcggaagtgc ggcttgctgg tccaccggag cttcttcccg cggagactcc
     6601 ccaattaagc gtcgacgaag ccatcgccga tgctgacgtc gtcatgatgc tgcgcgtcca
     6661 gcgcgaacga cttgaaacgg accttgggga tgctcccgga gaatatctcg ctgcttacgg
     6721 ccttacgcgc gagcgcctcg ctactgcctc gcccgaggcc gtcgtcatgc accctggacc
     6781 aatgaaccgc ggtgtcgaga tcgacggcga catcgccgac gatccgagat gttcattgat
     6841 cacccttcaa gtcgaaatgg gcgtagccgt aagaatggcc tgcctcgaac tcgttgtcgc
     6901 gaatagtgtc agcgcatcgc gatattgacc ggtgcatcgc cggcgacata gcgaacgaaa
     6961 caggctccgc ccgagtggcg gagcgaagtg caaagcgcct tcgcttggcc gatactgtta
     7021 aagccgcgaa cagagagccg gtaaaaagtg cccttcgggc tcgcaaatcg tgcgctcatt
     7081 ggagcgtagg ctttgagcgc tccaaatttg cgcgattcgc cattccaggc agcaaggacc
     7141 cgatccggcg atgcgtaagc gccgagctgg acgacggcgt gcgactttga agcgtcggta
     7201 acagtcgcgg gtctcgcgac gtgcgggatc ggtcttttgg ctggcatcgc gtgcggtgtg
     7261 atcgacgcga gtaccgcctt ggcatcagcg atggccacgg cgaccgcgga ggccgttagc
     7321 gtcgcgagcg ttggcttgac ctgcgagacg ggcgtgaccg ccgcaaccgg cagcggtgcc
     7381 gtttcactaa ccggcgccac tgccgcaaca aaggatggtt tggccggagc agaagcagcg
     7441 accgcgggtc tcgacaaggc taccaaagcg ggagccggag catgaacggc agcaacctct
     7501 actggcgcag tcgaaggtgt gtgtgcctcg ggtatatcgc tcttgtcgag cgccagctgc
     7561 accggctgac ccggatcgat agccgccggc gaaacaccga cgacggcagc gacttgatcg
     7621 gcagcatatt ttggcttcgc gatctgcatc cactgctgca tccgcgcgtc gagctggttc
     7681 gccggtacgt cttggccggc gatgatgcgc gcttcttgcc aattgccggc aagcgcctgc
     7741 gcgagtgcga gattttgccg gaccgtgggg tcgttggact ggcgtgccgc cggttcaagg
     7801 attgaaatgg cttcgttcgc tcggccggca agcgccaatg caagaccgta gtccgaggca
     7861 tcgagaagcc ctttcgcatc gcgcaacatt gcgacggcac gattgtcctt gccttgagca
     7921 atttcgacga gagcaagcct caggattacc tgcgcctg
//
LOCUS       DASRBJ010000023         6638 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_207788,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000023 DASRBJ010000000
VERSION     DASRBJ010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6638
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207788"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1682
                     /locus_tag="VE968_00710"
     CDS             <1..1682
                     /locus_tag="VE968_00710"
                     /inference="COORDINATES: protein motif:HMM:NF017077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHASE3 domain-containing protein"
                     /protein_id="HZU50373.1"
                     /translation="TPADWLLIIIASVAGIASATYLVSDGFRRATELTEAQHWETHTL
                     GVIATAEQTRSAIRNMQRGELGYLLTSNNLYLQPYLDGRRQAQSRIDQLRRLTQDNND
                     QVATVSRLASLVSAIEERFSAQIANHRSPHSAERISAIGTGEGENLIRAADVEIDRIV
                     NVETSLLAQRRQTLRAADAAAWQNRLALSVLGMVAVCAVLWLLLRGVAAGRTIQFERE
                     RAELAEELVSRDAQLAEQMEELNALYASAPIGLAFFSKDHRYLRVNEELARMNGRLIS
                     EHIGRPVAEILKSDAKPIEDMIDIVFETGHAVRDLEFTAPSKHDPHEQRHWLTGVYPV
                     KNDRGDVEAVGLWVIEISERKRAEEREALLAREVDHRAKNLLAVVQSVVQLTQADNAD
                     DLKSGIVGRIQALARAHSLLAESRWDGAQIDDLVREELAPYMSGSNARAGVSGPPLML
                     RPAAAQSLGIVLHELATNAVKYGALADADGELAVNWRRDDDQVEITWNEHTGRTIGAP
                     TSSGFGSKIIKASIERQLHGSIVQDWRPEGLQCTIRISAREALRAGEQQTA"
     gene            complement(1679..1924)
                     /locus_tag="VE968_00715"
     CDS             complement(1679..1924)
                     /locus_tag="VE968_00715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50374.1"
                     /translation="MKAIAALGLISAVAMAAASPATAAQGCGPGMHRAPNGTCHPNRG
                     PMAVTWVEGRFYPGHGYWYHNRWYQHRVRWHNDWRYR"
     gene            2067..3302
                     /locus_tag="VE968_00720"
     CDS             2067..3302
                     /locus_tag="VE968_00720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZU50375.1"
                     /translation="MSLIADLKSLDSSQRSAIWASYLGWTLDAFDYFLMTFMFTAIAK
                     DFGTDVSAVIRATFLTLAARPIGAFLFGWLAERFGRRPVLMVDIILFSLFELASGFAP
                     TLTSLLVLRFLFGIGMGGEWGLGASLVMESIPPKLRGPVSGLLQSGYPSGYFIASLVY
                     FLLFDRLGWRGMFMVGVAPALLVLLIRMHVRESPVFEARRNKAHVNPVMELVRHWKIA
                     LYLVVLMTAFNFFSHGTQDLYPTFLQKQHHFDTHTTGILAAIMNVGAIVGGISFGIWS
                     ERIGRKRAIIVASVLALPVMPLWAYSATPLLLALGAFLVQVAVQGAWGIVPVHLNELS
                     PPLARSLFPGFAYQLGNLIASGNGPLQAHVAEAHGNDYAFALALMCGIMAVVIAVWTA
                     FGPERKDADFAAEEGQAAR"
     gene            3345..4052
                     /locus_tag="VE968_00725"
     CDS             3345..4052
                     /locus_tag="VE968_00725"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HZU50376.1"
                     /translation="MSSYRGTADRPDKAKAIAAVLAVHLALAFLILWGLNVRIVRRAV
                     DGLTTINIKEPAPPPPPIIRPPAPRPESAPKAKGETAKKAEAAPVVSAEPRPVSVPMP
                     AAKLAATGAAPSAGTGTSGAGAGAGSAGIRAGAGGYADYSRFTPARLVENIPNSAYRQ
                     LAATGIPSGLVGVTILVNANGTVSSCRIARSSGDAATDALVCALTVRYVRFEPARDPY
                     GRPIAQDITYFPSWRRR"
     gene            complement(4021..5412)
                     /locus_tag="VE968_00730"
     CDS             complement(4021..5412)
                     /locus_tag="VE968_00730"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HZU50377.1"
                     /translation="MSSLRYQCTGQWPVHFFRMAGVVAALVLASVATTASAAPDSRLA
                     VPAVQQPPVTGQSIADFYRGRNNYPFWLAPNAGDAAEQLLNVLSSANLDGLDPEKYHI
                     DSLRQALEAARSGKKKPVEEADQELSSAFVAYVSDLRAAPDDGMTYVDESLRPKPPTP
                     LAALLTAGIAPSLSEYVRSLGWMNPIYSQLREALANHSYSTDEQRHVIELNMQRARLL
                     PGGKQRYVLVNAAQQRLYMYENGKPVDSMVVVVGKPKWPTPMLTAYIRYAALNPYWYV
                     PSDLAGEDVGQYVLKYGLKYLDEYGYQVVDDWTPDPKIIDPKTVDWKGVVDGKVDVLI
                     RQKPGPKNFMGRMKFMFPNKFGVYLHDNPRRELFLKSSRYFSGGCVRLEDAARLGRWL
                     FGRDLDWQDAGTEEPVPLATPVPVYITYLTAMPDGASVAYYDDVYNRDTPRLAGADES
                     SARVSAGASSGSK"
     gene            complement(5549..6046)
                     /locus_tag="VE968_00735"
     CDS             complement(5549..6046)
                     /locus_tag="VE968_00735"
                     /inference="COORDINATES: protein motif:HMM:NF024879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper domain-containing protein"
                     /protein_id="HZU50378.1"
                     /translation="MHKSLFAAALGSTAMLGACATNPAVPRDAAIGAVGGAAVGAVVP
                     GVSVIEGAAVGAAIGGLAGATWADPNNSGYVTGYTYNGQYYPGTPPGYDPTTHAVVTG
                     AVGGAALGAAAGAVLPGVSVLQGAVIGAAVGGLAGAVWADRNNDGVVDGYVYNGQYYP
                     GAPPG"
     gene            6249..6596
                     /gene="arsC"
                     /locus_tag="VE968_00740"
     CDS             6249..6596
                     /gene="arsC"
                     /locus_tag="VE968_00740"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013832239.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008794 - arsenate reductase
                     (glutaredoxin) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HZU50379.1"
                     /translation="MKATIFHNPMCGTSRKTLEILRDSGCYVWVHEYLKNPPTRDELV
                     RLYQRAGITPREGLRSKEPLAEELNLNRPDVSDDEVLDAMARHPILIERPIVETRNGV
                     RLCRPQEKVREIL"
BASE COUNT         1264 a         2061 c         2002 g         1311 t
ORIGIN      
        1 tcacgccggc cgactggctt ctcatcatca tcgcctcggt cgcaggtatc gcaagcgcga
       61 cctatctcgt cagcgatggc ttccgccgcg caactgaact gaccgaggcg cagcattggg
      121 aaacccacac ccttggcgta atcgcgacgg cagaacagac gcgaagcgcg atccgcaaca
      181 tgcagcgcgg cgaacttggc tatcttctca cctccaataa tctctatctc cagccttatc
      241 tcgacggtcg gcgccaggcc caatcgcgca tcgatcaatt gcggcgtctt acccaggaca
      301 acaatgacca ggtcgcgacg gtcagtcggc ttgcatcgct cgtaagcgcc atcgaggagc
      361 ggttttcagc ccagattgcc aatcatcgat cgccgcattc ggccgagcga atttcggcta
      421 ttggaaccgg cgaaggcgag aacctcatcc gtgctgctga tgtcgagatc gaccgcatcg
      481 ttaatgtcga gaccagtctt ctcgcgcagc gacgccagac attgcgcgct gccgatgcag
      541 cggcctggca aaatcgcctg gcgctctctg ttttggggat ggtcgccgtc tgcgccgtcc
      601 tatggctgct cttaagggga gtggccgcgg gaagaaccat acagttcgag cgggaacgag
      661 cggaacttgc cgaagagctg gtgagccgcg atgcgcagct tgccgagcag atggaggagc
      721 tcaatgcact ttatgcgagc gccccgatcg ggcttgcctt tttcagcaag gatcaccgct
      781 acctgcgcgt gaatgaagag ctcgcgcgca tgaacggtcg actgatttca gagcatatcg
      841 gcaggcccgt cgccgagatt ttgaagagcg atgccaaacc gatcgaagac atgatcgaca
      901 ttgttttcga gactgggcac gcggtgcgcg atctcgagtt taccgctcct tccaagcacg
      961 accctcacga acaacgtcac tggctgacgg gcgtctatcc ggtgaagaac gaccgcggtg
     1021 acgtcgaggc cgtaggcctt tgggtcatcg aaatcagcga gcgaaaaaga gccgaggagc
     1081 gcgaagcctt gctcgcgcgc gaggtggacc accgtgcaaa gaacctgctc gctgtcgtgc
     1141 agtccgtcgt ccagcttacc caggcagaca atgcggacga tttgaagtcg ggaatcgtcg
     1201 gccggatcca ggcacttgcg cgcgcgcaca gccttcttgc ggaatcacgc tgggacggcg
     1261 cgcaaatcga cgacctcgtg cgcgaggaac ttgcccccta tatgtcgggc tccaatgccc
     1321 gcgccggcgt cagtgggcca ccgctcatgc ttcggccggc cgccgctcag tcgctcggta
     1381 tcgttcttca cgagcttgcc acgaacgcgg tcaaatatgg tgccctcgcg gacgctgacg
     1441 gcgagctcgc cgtgaactgg cgccgcgacg acgaccaggt cgaaatcacg tggaatgaac
     1501 acaccggccg cacgatcggt gcgccgacgt cgagcggctt tggatcgaag atcatcaaag
     1561 ccagcatcga acggcagctt catgggtcga tcgtgcaaga ctggaggccc gaaggcctcc
     1621 agtgcactat acggatcagt gctcgcgaag cgctacgcgc cggcgagcag caaaccgcct
     1681 agcgatagcg ccagtcgtta tgccaccgga cccggtgctg gtaccatcga ttatggtacc
     1741 aatagccgtg accggggtaa aaacgaccct cgacccaagt tacggccatc gggccgcgat
     1801 ttggatggca ggtgccgttt ggcgcgcggt gcatgccggg gccgcagcct tgagctgcgg
     1861 ttgctggtga cgcggccgcc attgcgacgg cggatatgag accaagagct gcaattgcct
     1921 tcatcacatt ctctccttct tccaccgtag caactccatc gaaacgcagc cgttccatta
     1981 acctttgaca acaagaccgg ttgatcccgc ttgcggacaa gtcgacgcgc gggcactagt
     2041 cgcgccggtc ccctggagag ccgcggatga gcctcattgc cgatctgaag tccctcgatt
     2101 cgtcccagag aagcgcgatc tgggcgagct atcttggctg gacgctcgat gccttcgact
     2161 atttcctcat gaccttcatg ttcacggcga tcgcgaagga tttcggaaca gacgtctcgg
     2221 cggtaattag agcgaccttc ctgacgcttg ccgcaagacc aatcggtgca ttcctgttcg
     2281 gctggcttgc cgaacgcttc ggccgaaggc cagtgctgat ggtggatatc atcctgttct
     2341 cgctgttcga gcttgcctcg ggctttgctc cgacgctcac cagtttgctc gtgcttcgtt
     2401 ttctcttcgg catcggaatg ggcggcgaat ggggtctcgg tgcaagcctg gtgatggaat
     2461 cgatcccgcc gaagctgcgg gggccagtct cgggccttct ccagagcggc tacccgtccg
     2521 gctacttcat tgcgagcctc gtctatttcc tactgttcga ccggcttgga tggcgcggca
     2581 tgttcatggt tggagtagcg ccggcactac tcgtgttgct gattaggatg cacgtgcgcg
     2641 agagcccagt gttcgaagca cgtcggaaca aggctcacgt gaatccggtg atggagctgg
     2701 tgcgacactg gaaaattgca ctttacctcg tcgtcctcat gacggctttc aactttttca
     2761 gccatggcac ccaggatctc tacccgacgt ttctccagaa gcagcaccac ttcgataccc
     2821 acacgacggg cattcttgcc gcgatcatga acgtcggcgc gatcgtcggc gggataagct
     2881 ttggcatctg gtcggaacgt attggacgca aacgcgcgat catcgttgcg agcgttctcg
     2941 ccttgcccgt catgccgctc tgggcttatt cggcgacgcc gcttctgctc gctcttggcg
     3001 cctttcttgt ccaggtcgca gtccagggag catggggcat tgtccccgtt catctcaatg
     3061 agctttcgcc gccgcttgca cgcagcctct tcccgggctt tgcctatcag ctcggaaacc
     3121 tcatcgcctc cggcaatggc cctctccagg cacatgtcgc cgaggcgcac ggtaatgact
     3181 atgcctttgc tctcgcgctc atgtgcggga tcatggcggt ggtgatcgcc gtttggacgg
     3241 cctttggccc tgaacggaag gacgcggatt tcgctgccga agaggggcaa gccgcgcgct
     3301 aaaccttcgc tcgaaccaag cgttgttcga acaaggaagt gcgcgtgtcg agctatcgcg
     3361 gaaccgctga tcggccggac aaggccaagg caattgcggc ggtgcttgcc gtccacctcg
     3421 cgcttgcctt cctgatcctt tgggggctga atgtgcggat tgtccgccgc gcggtcgacg
     3481 gtctcaccac catcaacatc aaggaaccgg cgccgccgcc gccgccaatc attcggccgc
     3541 cggcaccaag gccagaatcg gcgccgaaag caaagggcga aacggctaag aaggccgagg
     3601 cagcgcccgt cgtttcggcc gaaccgaggc ccgtttcagt cccaatgccg gcggcaaagc
     3661 tcgccgccac cggtgccgcg ccaagcgctg gcaccggaac gtccggcgcg ggcgccggcg
     3721 cgggctcggc cggcattcgt gcgggcgccg ggggctatgc cgattattcg cgtttcacgc
     3781 ccgcgcggct cgtcgagaat atccccaatt cggcctatcg gcagctcgct gcgaccggca
     3841 taccgagtgg ccttgttggt gtgacgatcc tcgtaaacgc gaacggaacg gtctcatcgt
     3901 gccgcattgc tcgctcgagc ggcgacgccg cgaccgacgc cctcgtctgc gcgctcacgg
     3961 tccgctacgt ccgcttcgag ccggcgcgcg atccctacgg ccgtccgatt gcgcaggata
     4021 tcacttactt cccgagctgg cgccggcgct gacgcgcgca ctgctttcat cggcgccagc
     4081 aagccttggc gtgtctcggt tgtagacgtc gtcatagtaa gcgacggacg cgccgtcggg
     4141 catcgccgtg agataagtga tatagaccgg cacgggtgtc gcaagcggca cgggttcctc
     4201 ggtaccggca tcctgccagt caagatcgcg cccgaaaagc catcgaccaa gccgtgcggc
     4261 atcctcgagc cgtacgcacc cgccactgaa atatcgtgag gacttgagga acagctcgcg
     4321 acgggggttg tcgtggaggt atacgccgaa cttgttgggg aacatgaatt tcattcggcc
     4381 catgaaattc ttgggtccgg gtttctggcg gatgagcaca tcgaccttgc cgtcaaccac
     4441 ccctttccag tcgaccgtct tgggatcgat gattttcggg tccggcgtcc agtcgtcgac
     4501 gacctggtag ccatattcgt cgagatactt gagcccgtat ttgaggacat attggccaac
     4561 gtcctctccg gcgaggtctg aaggtacgta ccaataagga ttgagagccg cgtagcgtat
     4621 gtaggcagtc agcatcggcg ttggccattt gggcttgccg acgacgacga ccatggaatc
     4681 gaccggcttg ccgttctcgt acatgtacag ccgctgctgc gcggcattga cgagcacgta
     4741 acgctgcttg cctccaggga ggagccgagc gcgctgcatg tttagttcga taacgtgccg
     4801 ctgttcgtcc gtcgaatagc tgtggttggc gagggcttcg cgtagctgcg aatagattgg
     4861 gttcatccac ccgaggcttc gaacatattc cgaaagcgag ggcgcaatgc cggcggtaag
     4921 gagtgccgct agcggcgtcg gtggcttggg tctgaggctt tcgtcgacat aggtcatccc
     4981 gtcgtccggc gccgcgcgaa gatccgatac gtacgcaacg aaggcgctcg aaagctcctg
     5041 gtcggcctct tcaaccggct tcttcttccc gctccgtgcc gcctcgagtg cctgcctcag
     5101 tgaatcgatg tggtacttct cgggatcaag gccatcgaga ttggcgctgc tgaggacatt
     5161 gagcaactgt tcggctgcgt caccagcgtt cggcgccagc cagaacgggt aattattccg
     5221 cccacggtaa aaatcggcaa tcgattggcc ggtgaccggt ggctgctgga cagcgggcac
     5281 tgccaatcgc gagtcgggcg cggcgctcgc ggtggtcgcc accgatgcaa gcaccagagc
     5341 ggcaaccacg cctgccattc gaaaaaagtg caccggccat tggccggtgc actgataacg
     5401 caaactgctc acttcttctc caatcaaact tcccaccaaa gaccctcttt gatgggggtc
     5461 cgatctaacc gcgttcccca ctgcggctcg gcgccggagc cggcattgga gccggagctg
     5521 gagcgggcgc tggagcagca ttaccggttt aaccaggagg ggcacctggg taatattgcc
     5581 cgttgtagac gtatccgtcc actacgccat cattgttgcg atcagcccac accgcgccag
     5641 cgaggccgcc gaccgcagca ccgatcacag caccctggag aacactgact ccgggaagga
     5701 ccgcgccggc ggcagcgcca agtgccgcgc cgccgaccgc gccagtcaca acggcgtgag
     5761 tcgttgggtc atagcccggc ggcgtgccgg gataatattg cccattatag gtgtagccgg
     5821 tcacatagcc gctgttgttg gggtcggccc atgtcgcccc ggcaagaccg ccgatcgctg
     5881 cgccaaccgc ggcgccctcg atcacgctta cgcccggaac aaccgcgccg acggcagcgc
     5941 caccaacagc accaattgcc gcatcgcgcg gcacggcggg gttggtcgcg caggcgccga
     6001 gcatcgcggt gcttcctagc gcagcggcaa atagggattt gtgcatcgct gtttctcccg
     6061 ttcttgttaa tctcgcgaga acatgctcgc gctgccgcct tccgccggcg acggtgcatg
     6121 ttacaggcgc ggaaacgacg ggagcggctc atcgttccgc tcgcgcgaca atgctcgtcg
     6181 ggcaaacgac gtttctggtg ttaaatcttt gtttaagctg ctgaatccac ccgaggaacg
     6241 gttcaaagat gaaagctaca atttttcaca acccaatgtg tggaacatcc cgcaagacgc
     6301 ttgagatcct gcgcgactca gggtgctacg tgtgggtcca cgaatatctc aaaaacccgc
     6361 cgacgaggga cgaacttgtt cgattgtacc agcgcgccgg aatcacccca cgcgagggac
     6421 ttcgttcgaa ggaaccgctc gccgaggagc ttaacctcaa tcgaccggat gtcagcgacg
     6481 acgaggtgct ggatgccatg gcaaggcacc cgatccttat cgagcggcca atcgtcgaga
     6541 cgaggaacgg cgtccgcctc tgccgcccgc aggagaaggt tcgcgaaatt ctctagtggg
     6601 ccaatattat catcgggggc ctatgttcgc taaataga
//
LOCUS       DASRBJ010000024        12777 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_458732,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000024 DASRBJ010000000
VERSION     DASRBJ010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 12777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12777
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458732"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..438
                     /locus_tag="VE968_00745"
     CDS             <1..438
                     /locus_tag="VE968_00745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017502765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HZU50380.1"
                     /translation="AVEALGLEPAWVLVDGNACPKWQRPSKAIVDGDAKCRSIAAASI
                     IAKVTRDRIMADFARQYPGYGWETNRGYGTPEHWRALRAQGPTPLHRRSFPKVRAAIE
                     KSSQPDLVFEITDSESFESHSPEVESRALENTQHVVQKLRSAA"
     gene            537..1670
                     /locus_tag="VE968_00750"
     CDS             537..1670
                     /locus_tag="VE968_00750"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0009008 - DNA-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HZU50381.1"
                     /translation="MNLIARIAEQPPSLRRVRKASSELALDTIIEGDCIAAMERLPDR
                     SVDMIFADPPYNLQLGGDLFRPEGSRVDAVDDEWDKFESLAAYDNFTREWLEQARRVL
                     KDDGTIWVIGSYHNIYRVGALLQDADFWILNDIVWRKSNPMPNFRGTRFTNAHETLIW
                     CAKDEKARYTFNYRAMKALNDDLQMRSDWLLPICSGGERVKSEDGSKAHPTQKPEALL
                     YRILLACTKPGDVILDPFFGTGTTGAVARRLGRRWIGIERERSYVKVARERIASTLPL
                     DESAMKTVPDKRQQPRVAFGLLVESGLVPAGASLTDAKRRWSACVRADGSIVCEGHSG
                     SIHKVGAALQGAPSCNGWTFWHVASAGSLVLLDALRQQHLAGL"
     gene            1683..2756
                     /gene="folP"
                     /locus_tag="VE968_00755"
     CDS             1683..2756
                     /gene="folP"
                     /locus_tag="VE968_00755"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HZU50382.1"
                     /translation="MRTLIRPTGFVDSPFGYDGLVARLAGGLNWFASVELIKVEGHAR
                     VASELLSVEQFEARVDERLADQWRALTSTRAPLELGSRTVRIDQPQVMGIINATPDSF
                     SDGGQFADPASAAEAGAAMAAEGAAIIDVGGESTRPGARSIWEGDEIERIVPVIRQLA
                     SGGAAVSADTRKAEVMSAAVEAGARMINDVSALTYDARSLEVAASLDVPLVLMHHRGA
                     PEVMQDGPRYEDVLVEVYLWLEERVGAAVEAGVKRENILVDPGFGFGKNVSHNLQLMN
                     GLALFHSLGCPVVVGASRKRTIGALANEAPVERRLGGSVAMALKAAEQGVQIIRVHDV
                     FETVQAIRVWRGLRDQALTPRLG"
     gene            complement(2822..4258)
                     /locus_tag="VE968_00760"
     CDS             complement(2822..4258)
                     /locus_tag="VE968_00760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HZU50383.1"
                     /translation="MREEPVRSLLLLDANPEERRLISAIASRSGWSVVGAADEETALA
                     LLQGPHGREVQAVLLGAWDPDKGPQLISALREERPKLSIIVLSHGDTVSVAVEAMRSG
                     ASDFLVRPVAPERLIDALAANADRRRASGELAPVSEKLAPPLALEQLIGAAPEFRAAL
                     AVAAKSARNRLPVLVIGEPGTGKETIARAIHGASLRAKGPLLSLDCKAVAANIVDSEL
                     FGHEKGAFPGAFTSKTGKMVQADGGTLILDEISVLPEQTQELLDRVLATGEVRPVGLN
                     GSYSVDVRVIATSSRPLPADFHAGLAERIGATTVSLPPHRDRTGDIPALARHLLQRFS
                     DQTGLKPLSIGNDALAVLMRYGWPGNVRQLAGVLFRAALQCDESSLTAEHFPHIAIQS
                     RYTARRTDYAPSLSQARSEQVIAGVPSVTLYSADGHLRPLDEIEADIIRLAIGHYRGR
                     MTEVARRLGIGRSTLYRKLGELGIDTAA"
     gene            4401..4553
                     /locus_tag="VE968_00765"
     CDS             4401..4553
                     /locus_tag="VE968_00765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50384.1"
                     /translation="MAHEEEPLLASPPTQEMAVHVKDYERFTRMFKFGAIACFCVGFI
                     VLLILK"
     gene            4558..5685
                     /locus_tag="VE968_00770"
     CDS             4558..5685
                     /locus_tag="VE968_00770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P) transhydrogenase subunit alpha"
                     /protein_id="HZU50385.1"
                     /translation="MKIAVLKEALDETRCAAVPETVKRFVALGAEMAIERGTGERAAI
                     SDADFEAAGATLGSRAQVLASAGIILVVNGPDPGELAGAPKDALLVGALDPLRRRAVI
                     DGYASASIEALAMEWMPRITRAQSMDILSSQSNLAGYKAVVDAASAYGRAFPMMMTAA
                     GTISPAKVFVMGVGVAGLQAIATAKRLGAQVSATDVRSATKEQIQSLGAKPIFVENVA
                     GIEGEGSGGYATEMSPEYQKAQAELVSAHIAKQDIVITTALIPGRPAPRLINDAQVAS
                     MRPGSVIVDLAADAGGNVEGTVSGERVTKHGVTIIGASNLARSLSADASALFARNLYN
                     FLAAFWDKDQARVVLLDDDEIVKAIRLTQNGKVVNDRLIAA"
     gene            5692..6813
                     /locus_tag="VE968_00775"
     CDS             5692..6813
                     /locus_tag="VE968_00775"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HZU50386.1"
                     /translation="MISSDILVIGGGIAGLSAAAALAEHRRVDVLEAEEQVGYHSSGR
                     SATMVHYALGDRLVRALTLASRPFFDSPPLGFTDAPLGHQMPVLVHAREDEAAALTTL
                     EAEISLFAELERLDAKGLHELCPILNDDAVHGIVDRNGTRLDPHALLQGNLRQLRRLG
                     GELHTGQRVAEIGRSNDTWAVKSERGDVFAAPIIINAAGSWADEVAKLAGAASLGLTP
                     KRRTIITFDAPPDVELDRLPFAKTIHDELYFAPESGRLFASPMDEVPSGPCDAQPDEY
                     EVALAAFRMEERTTVKVNRIHSRWAGLRTFTVDRHPAVGFARDCEGFFWLAGQGGFGL
                     QTSPALADVTRALVTGGPWPLANVSEESLSPLRFDAKDA"
     gene            complement(6778..7260)
                     /locus_tag="VE968_00780"
     CDS             complement(6778..7260)
                     /locus_tag="VE968_00780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HZU50387.1"
                     /translation="MSLQSVRLWLQEHAPDLRLIEVDGTTATVETAAIALGVEPGRIA
                     KTLAIRAGEHLFLLVTRGDARLDNRKCKDEFGARPRMLGAEETLELTGHPLGGVCPFG
                     LKSALPVYLDVSLKAFDIVYPAGGSLNSSVEVSTERLSALVSSRWVDLCVLRVEAEGT
                     "
     gene            complement(7257..7676)
                     /locus_tag="VE968_00785"
     CDS             complement(7257..7676)
                     /locus_tag="VE968_00785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008603383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HZU50388.1"
                     /translation="MLRQSSTLLVIRAPAPGLFEFTADVRDFITGSRINEGLLTIFCR
                     HTSASLLIQENASPSVQRDLEAYMARLAPESGAYEHQDEEPDDMPAHLRTALTSTQLS
                     IPVTSGQPVLGTWQGIFLFEHRSSRPERQIALNLIGE"
     gene            complement(8034..10340)
                     /locus_tag="VE968_00790"
     CDS             complement(8034..10340)
                     /locus_tag="VE968_00790"
                     /inference="COORDINATES: protein motif:HMM:NF017076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HZU50389.1"
                     /translation="MPRSLEEKALVGWRTIKANWSLVRLVLGTTLLGIVLTLVALPAD
                     ELLRAARNQFHRHATSGEIVLVSVDNNTLQAIGRWPWPRRDHAQLIDRLTAAGAKHIA
                     FDMTFETHSDARDDRLLAESIERSGRVILAARGAWGPDGSTQQSLASLSMFTRHAALA
                     SIGVHYNYQNAVWRLPYGVSVGGKLIPSMASRLAGRAPRQGTFMVDYSFDPRTVPTVN
                     AADVITGKFDPRIVRGKEVIIGATSDALNDQYYLPGIGKMGGVYIQILGAETLRVGNP
                     VDLGWMPAMLLTLGLIILAVTRGTWTQQNFVFGASLALLLLGPVAFESQLIFVDNALS
                     LLVLSASWGVYTWRTLKQRGLTNSLTGLPNLDALRADPNGKSKALIAARIFNYEEITA
                     TLPPEGERQIVDQILSRLTIGSPDRALYQGDGGIFAWFEEPNAPFGNHLDALYSLFRN
                     PARAAGLSIDLTVAFGVEVGSGRSVANRLASALVAAEEAAHDGLKWKFYDPETLENAS
                     WKLSMLSQLDEAIDRGEVWVAYQPKLDMKTQRIVGAEALARWTHPEKGPIAASEFVAA
                     AEQHNRIGKLTDFVLEKAVGAAAQINKRGVQFEIAVNLSARLLSDKGFTLRLAALLAR
                     HGLEPGHLTLELTETAALTGTGEGLEMINRLRDLGVNIAIDDYGTGLSTLEYLKKIPA
                     NEIKIDQSFVKGIVDNRSDRLMVQSTIELAHSLGRKVVAEGVEQREALDLLGDLGCDI
                     AQGFAIGRPMSMDSLTKRLASDRKRTAA"
     gene            10572..10862
                     /locus_tag="VE968_00795"
     CDS             10572..10862
                     /locus_tag="VE968_00795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006833497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P) transhydrogenase subunit alpha"
                     /protein_id="HZU50390.1"
                     /translation="MDFISILSIFVLACFVGYYVVWSVTPALHTPLMSVTNAISSVIV
                     VGALIASAAPGVPGSKWLGLVAVALASVNIFGGFAVTQRMLGMYKRRERKDG"
     gene            10855..12294
                     /locus_tag="VE968_00800"
     CDS             10855..12294
                     /locus_tag="VE968_00800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HZU50391.1"
                     /translation="MVEAAPAQPAWVLLAYLIAGICFILALRGLSNPESSRRGNLTGM
                     IGMTIAVVTTLATHAIATLPEIIAAMVIGGGIGLVTARKIQMTAMPQLVAAFHSLVGF
                     AAVLVGAAAYLNPLAFGIGVRVTPIASPSFISILPVSRIEMGLGVAIGAITFSGSVIA
                     FLKLNGNMSGKPILLPLRHVINLGTLAAILVLIAYFTQDQSPWVFGLVAGLSFAIGFL
                     LIIPIGGADMPVVISMLNSYSGWAAAAMGFTLHNSAMIITGALVGSSGAILSYIMCRA
                     MNRSFISVIAGGFGGADTSSGAAAAIDRPYKRGSAEDAAFLMSQAEQVIIVPGYGMAV
                     AQAQHAVREMADLLKAKGVRVKYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEDINS
                     DFAQTDVAYVIGANDVTNPAARTDKSSPIYGMPVLDVEKARTVLFVKRSMGGVGYAGI
                     DNDLFYRDNTMMLLGDAKKMTEEIVKALS"
     gene            12456..>12777
                     /locus_tag="VE968_00805"
     CDS             12456..>12777
                     /locus_tag="VE968_00805"
                     /inference="COORDINATES: protein motif:HMM:NF013353.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036361 - racemase activity, acting on
                     amino acids and derivatives [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HZU50392.1"
                     /translation="MRKLGIIGGTSWSSTALYYQHINRGVAQRLGGLHSARLVIESLD
                     LAPFAEMELSGDWDGVARETLDAARRLEAAGADGVIITSNTGHKVYDAVAPKIGVPML
                     HIADA"
BASE COUNT         2467 a         3800 c         3962 g         2548 t
ORIGIN      
        1 gcggtcgagg cacttggcct tgaacccgcc tgggtgctgg ttgacggaaa cgcctgcccc
       61 aagtggcaac gtccgtccaa ggcaatcgtc gacggcgacg ccaagtgccg ctcgatcgcc
      121 gcggcctcga tcatcgccaa ggtgacgcgc gaccgcatca tggctgattt tgcacggcaa
      181 tatccaggct atggctggga aacgaaccgt ggctacggca cgcctgaaca ttggcgggcc
      241 cttcgcgcgc agggaccaac accgcttcac cggcgaagct tcccgaaagt gcgtgcggcg
      301 atcgaaaaat catcgcagcc ggacctcgtc tttgaaatca cggacagcga gtctttcgag
      361 tcacactcac cagaagttga gtcacgcgcg ctcgaaaaca cccaacatgt tgtgcaaaag
      421 ctgcgctcgg ccgcttgagc cacggcaatg cgccgggctc tcttaatttt gcatccttga
      481 ccctctgtcc cgactgactc accttcgctg cccttggtta gaggggcaca agcttcatga
      541 atctcatcgc tcgaattgcg gagcagccgc catcattgcg gcgagtgagg aaagcatcga
      601 gtgaacttgc tctcgatacg atcatcgagg gcgattgcat cgcagccatg gaacgtcttc
      661 ccgaccgaag cgtcgacatg atcttcgccg atccccccta caatctgcag ctcggtggcg
      721 acctctttcg tcccgaggga agtcgcgtcg atgctgtcga cgacgaatgg gacaaattcg
      781 agagccttgc ggcctacgac aatttcacgc gcgaatggct cgagcaggcg cgccgtgtcc
      841 tcaaggacga tggcacgatc tgggtaatcg gcagctatca caacatctat cgtgttgggg
      901 cgcttctgca ggacgcggac ttctggatcc taaacgacat cgtttggcgg aagtcgaacc
      961 caatgcccaa tttcaggggg acacgcttca ccaatgccca tgaaacactg atctggtgcg
     1021 ccaaggacga aaaggcgcgc tacaccttca actaccgcgc gatgaaagcg ctcaatgacg
     1081 atctccagat gcgctcggac tggctattgc cgatctgctc gggtggcgag cgcgtgaaat
     1141 ccgaggatgg ctcgaaagcg cacccgacgc agaagcccga agctcttctc tatcgaatat
     1201 tgcttgcctg cacgaagccc ggcgacgtca tccttgatcc attcttcggc accgggacca
     1261 ccggcgccgt tgcccggcgg cttggtcggc gctggatagg gatcgagcgt gagcgttctt
     1321 acgtgaaagt tgcacgcgaa cgaattgcct ccactcttcc gctcgatgaa agtgcaatga
     1381 agaccgtacc cgacaagcgg caacagccgc gtgtcgcctt cggtcttctc gtggaaagtg
     1441 gcctggtgcc ggcgggcgca agtctcaccg atgccaagcg ccgctggtct gcttgcgtac
     1501 gagcggacgg gtcgatcgtc tgcgagggtc attcaggctc gatccacaag gtgggtgccg
     1561 cactgcaggg ggcgccctcg tgcaatggct ggacgttctg gcatgtcgct tcggctggat
     1621 cgctcgttct gcttgacgcg cttcggcagc agcatctcgc cggcctgtag cgcgaccgag
     1681 acatgcgaac gctaattcgc ccgacgggct ttgttgattc gccatttggc tatgatggac
     1741 tggttgcgcg gcttgcaggc ggtctcaact ggtttgcgtc ggtcgagctg atcaaggtcg
     1801 agggacacgc gcgtgtcgcg agcgaacttc ttagcgtcga gcaatttgag gcgcgcgtcg
     1861 acgagagact tgcggatcaa tggcgtgcat tgaccagcac gcgagcacca ctcgagcttg
     1921 gctcgaggac cgttcgcatc gatcagccgc aggtgatggg catcatcaat gcgacgcccg
     1981 acagcttctc cgatgggggg cagttcgccg atccggcttc ggccgccgag gccggtgctg
     2041 caatggccgc cgaaggggcg gcaatcatcg atgtcggcgg cgaatcgacg cgtcccggtg
     2101 ctcgctcgat ttgggaaggc gacgagatcg aacgcatcgt tcccgtcatt cgccagctgg
     2161 ccagtggtgg cgcagccgtg tcggccgaca cgcgcaaggc cgaggtcatg agcgcagcgg
     2221 tcgaggcggg cgcgcgaatg atcaatgacg tctcggcgct gacctatgac gcacgatcgc
     2281 tcgaagtcgc ggcaagcctt gatgtgcccc ttgtcctaat gcaccatcgt ggtgcgcccg
     2341 aggtgatgca ggatggccca cgttacgagg acgtgctcgt cgaggtttac ctgtggctcg
     2401 aggagcgggt cggggccgcc gtcgaggcgg gggtcaagcg agagaacatc ctcgtcgatc
     2461 ctggctttgg ctttgggaag aacgttagcc ataacctcca gctgatgaac gggcttgcgc
     2521 ttttccattc gctcggctgt cccgtcgtcg tgggcgcgag ccgtaagcgc acgattggcg
     2581 ctcttgcgaa cgaggctccc gtcgaacgac gcctaggcgg tagtgtcgcg atggcgctga
     2641 aagcggccga gcagggcgtg cagatcattc gcgttcacga cgtgttcgag accgtgcagg
     2701 ctattcgcgt gtggcgcggc ttgcgcgacc aggcactgac gccaaggctg ggctgaagaa
     2761 gaaaggccgg ctcgcctcag tttccgttct tattgagagc ccgttcgcat cggttgcgcg
     2821 atcaggcggc cgtgtcgatt ccgagttcgc caagctttcg gtatagagtc gatcggccga
     2881 tgccgaggcg ccgtgcgact tcggtcatgc ggccgcgata atggccaatc gcgagccgga
     2941 ttatgtccgc ctcaatctcg tcgagcgggc gcaaatgccc gtcggcgcta tacagcgtga
     3001 cgctcggtac tcccgcaatc acctgctcgc ttcgcgcttg gctcaagctc ggcgcatagt
     3061 cggtccgccg cgccgtgtag cgcgactgta tggcgatgtg tgggaagtgt tcggcagtaa
     3121 gagaactttc gtcgcactgc agtgccgcgc ggaacaatac accggctaat tgccggacat
     3181 tgcctggcca gccgtagcgc atcaagaccg cgagtgcatc gttgccgatg gacaatggct
     3241 tgaggccggt ctgatccgaa aagcgctgga ggaggtggcg agcaagggca gggatgtcgc
     3301 cggttcggtc acgatgtggc ggcaggctca ctgtcgttgc accgattcgc tcagcaagtc
     3361 ccgcatggaa atcggccgga aggggccggc tgctggtggc gatcacccgg acgtccacgg
     3421 aatagcttcc gttaagcccg actgggcgca cttcgcccgt cgcgagaacg cgatcgagca
     3481 attcctgggt ctgttcagga agaaccgaaa tctcgtccag gatcagcgtc ccgccgtcgg
     3541 cctggaccat ctttccggtc ttcgatgtga atgcgccggg gaaggcgccc ttctcgtggc
     3601 cgaacagctc gctgtcgacg atatttgccg caaccgcctt gcagtcgagg gagagtaggg
     3661 gccccttggc ccgaaggctg gcgccgtgga ttgcgcgagc aatggtttcc ttgccggttc
     3721 caggttcgcc gataacgagg accggcaacc gattgcgtgc cgactttgcg gcaacggcga
     3781 gtgcagcacg aaactcgggc gccgcaccga tcaactgttc gagcgcgagt ggcggcgcga
     3841 gcttttccga aacgggcgca agctcacccg aagcacggcg tcgatccgcg ttggccgcaa
     3901 gcgcatcgat caaacgctcg ggtgcaactg gccgaaccag gaaatccgac gcgccggagc
     3961 gcattgcttc aacggcgacg gacacggtat cgccgtgcga aagcacgatt atggagagtt
     4021 ttgggcgttc ctcgcgaagt gcactgatga gctgcggccc cttgtccgga tcccaggcgc
     4081 cgagcagcac tgcctgaact tcgcggccat gcgggccttg cagaagggca agagccgttt
     4141 cctcgtcggc ggctccgaca acgctccagc ccgagcggct ggcgatggcc gagatcagcc
     4201 ggcgttcttc cggattcgca tccagcagca acagtgaacg aactggttct tcacgcattc
     4261 tcggcttgcc ctctcgcgca accctatgcg cgaaggagta aaggtcgcct taacttctcg
     4321 atgccgggcg ttcagggact tgggcgtcga ggattggctt gttatggggt gcccaacgaa
     4381 ggctcacaaa agggaagaag atggcgcacg aagaagaacc gctcctcgct agtccaccga
     4441 cgcaagagat ggccgtgcac gtcaaggact atgagcgctt cacgcgaatg ttcaagtttg
     4501 gtgcaatcgc ctgcttttgc gtcggcttca tcgtgctcct catcctgaaa tagaccgatg
     4561 aagattgcgg tcctcaagga ggcgctcgac gagacgcgct gcgccgccgt gcccgagacc
     4621 gtgaagaggt tcgttgccct cggtgccgag atggccatcg agcgcggcac tggagaacgt
     4681 gcagcgataa gcgatgcgga cttcgaggcg gccggagcga ccctcggttc gcgggcgcaa
     4741 gtgcttgcca gtgcgggcat catactcgtt gtgaatggac ccgacccggg cgaacttgcc
     4801 ggagcgccaa aggacgcgct tctcgtcggc gcgctcgatc cgcttcgccg ccgtgcggtg
     4861 attgacggct atgccagtgc ctcgattgag gctctcgcca tggaatggat gccgcgcatc
     4921 acccgagcgc agtcgatgga catcctttcc tcgcaatcga accttgctgg ctacaaggcg
     4981 gtcgtcgacg cggcctccgc ttatggtcgc gcctttccga tgatgatgac cgctgccggc
     5041 acgatcagcc cggcaaaggt gttcgtgatg ggtgtcggcg tcgccggtct ccaggcgatc
     5101 gcgaccgcca agcgactggg agcgcaggtc agtgcgaccg atgttcgatc cgcgaccaag
     5161 gaacagattc agtccctcgg tgcaaagccg atcttcgttg agaatgtcgc gggcatcgag
     5221 ggcgaaggat caggcggtta cgcaacggag atgtcgcctg agtaccaaaa ggcacaggca
     5281 gaactcgtct cggcgcatat cgcaaaacag gacatagtca tcaccacggc tctcatccct
     5341 ggtcgccctg cgccgcgatt gatcaacgat gcgcaagtcg caagcatgcg tcccgggagc
     5401 gtcatcgttg accttgccgc ggatgccggc ggcaatgtgg aaggcaccgt ctcgggcgag
     5461 cgtgtcacca agcatggcgt taccattatc ggtgcttcca acctcgctcg aagtttgtcg
     5521 gcggacgcat ccgccttgtt cgcacgcaac ctttataatt ttctcgccgc tttctgggac
     5581 aaggaccagg cgcgcgtcgt gctcctggac gatgacgaga tcgtcaaggc aatccgcctg
     5641 acgcaaaatg gcaaggtcgt gaatgaccga ctgatcgcgg cctgaacgat cgtgatcagt
     5701 tccgatatac tcgtcattgg cggcggcatt gctggcctat cggcggccgc ggcactcgcg
     5761 gaacatcgcc gcgtcgatgt actcgaagcc gaggagcagg ttggatatca ttcgtcgggg
     5821 cggagtgcga ccatggtcca ctatgcgctt ggcgatcgcc tcgtaagagc gctcacgttg
     5881 gcgagccgtc cgttttttga ttcgccgccg ctgggcttca ccgatgcacc gcttggtcac
     5941 cagatgccag tgctcgtgca tgcgcgagag gatgaagcgg ctgctctaac gacactcgaa
     6001 gccgagattt cgctttttgc ggaactcgag cggctcgatg ccaaggggct ccacgaactc
     6061 tgtccaattc tcaacgacga cgccgttcac gggatcgttg atcgcaatgg cacgcggctt
     6121 gatccccatg cgctccttca gggcaatctt cgtcagcttc gccgccttgg tggcgaactc
     6181 cacacggggc agcgggttgc cgagatcggc cggtccaatg acacctgggc cgtcaagagc
     6241 gagcgcggcg acgtgtttgc cgctccgata atcatcaatg cggcgggctc gtgggcggac
     6301 gaggtggcaa agctcgcggg agccgcgtct cttggcctaa cgcccaagcg gcgcacgatc
     6361 attacgttcg acgcgcctcc ggacgtcgaa cttgatcgtc tcccttttgc aaaaacgatc
     6421 cacgacgagc tttactttgc accggaaagc ggacgccttt tcgcatcgcc aatggacgaa
     6481 gtgccaagcg gaccatgtga tgctcagccc gacgaatatg aagttgcgct tgccgcattc
     6541 cggatggaag agcgaacgac ggtcaaggta aaccgaatcc acagccgctg ggccggcctt
     6601 cgaacattca ccgtggatcg gcatcccgcc gtcggcttcg cacgcgactg cgagggtttt
     6661 ttctggctcg ccgggcaggg tggatttgga cttcagacct ctccggcgct tgcggacgtc
     6721 acccgcgcac ttgttaccgg tggaccctgg ccattggcga atgtcagcga ggagagccta
     6781 agtcccctcc gcttcgacgc gaaggacgca tagatcgacc catcggctgg aaacgagtgc
     6841 cgacaaccgc tcggtcgaaa cttcgaccga gctgttgagc gatccgccgg ccgggtaaac
     6901 aatgtcgaac gccttgagcg agacgtcaag gtagacggga agggccgact tcagcccgaa
     6961 cgggcaaacc cctcctagcg ggtggccggt gagctcgagg gtttcttcag cgccaagcat
     7021 ccgcggtctt gcgccaaatt cgtccttgca cttgcggttg tcgaggcgcg cgtcgcctct
     7081 cgtcacaagt aggaacagat gttcgccggc acggattgca agtgtctttg caatcctccc
     7141 gggctcaacg ccgagcgcaa ttgccgccgt ctccaccgtc gcggtggttc catcaacttc
     7201 gatcagcctc aagtcggggg catgctcttg aagccagagg cgaacggact ggagactcat
     7261 tcgccgatga gattgagcgc aatctggcgc tcgggcctgc ttgagcgatg ctcgaacagg
     7321 aatatacctt gccatgtccc aagcaccggt tgaccgctcg tcactgggat cgagagctgg
     7381 gtagaggtca aggccgtccg cagatgcgcg ggcatgtcat ccggttcctc atcctgatgt
     7441 tcgtaggcgc cgctctcagg cgcaaggcgc gccatataag cttcaaggtc gcgctgtacg
     7501 gatggcgaag cattctcctg gatcagcagc gaagcggatg tatgccggca aaagatcgtc
     7561 aggagcccct cgttgatcct gctcccggtg atgaaatcac gaacatccgc ggtgaattcg
     7621 aacaaacctg gcgccggcgc gcgaatcacc agaagcgtgc tcgactgtcg aagcatagct
     7681 tgcgatctaa tcagcaaaga gcttgcgcgc cacacgcttg gcggcagcga gaaagggcaa
     7741 aaacaaaggc gcccgccaaa tggcgggcgc cggctatctc attgattata gagacctttc
     7801 ggtctccaag aagatcgatc aggctcccgg gccagtgttg cccgaaccgc caccccacaa
     7861 ccaagccgcg attgtagcca gcattatcag tcccctttta ctcggcacca ctgcttcatt
     7921 gcagctaacg ggacgttaac cttaatcgat atggttagca aacgattaag tataaaaatg
     7981 gcgcagaact gcgcgatacg atgtaaaaga atgatccgtt ttggaggtaa aggttaggcg
     8041 gcggtgcgct tgcggtcgga agcgagccgc ttcgtcaggc tgtccatgct cattggacgg
     8101 ccgatcgcga acccctgcgc gatgtcacaa ccaagatcgc cgaggagatc cagggcctcg
     8161 cgttgttcga ctccttcggc gacgaccttg cggccgagcg aatgagccag ttcgatggtc
     8221 gactgtacca tcaggcgatc gcttcggttg tcgacgatgc ctttgacgaa gctttgatcg
     8281 atcttgatct cgttcgccgg gatcttcttc agatattcta gcgtcgacaa gccggtcccg
     8341 tagtcgtcga tagcgatatt gacgccgaga tcgcgaagcc ggttgatcat ctcgagccct
     8401 tcaccagtgc cggtgagtgc ggccgtttcg gtaagctcca gggtgaggtg gcccggttca
     8461 agtccatggc gcgcgagcaa cgccgcgagc cgaagcgtga accccttatc gcttagcagg
     8521 cgtgccgaaa ggttgaccgc gatctcgaac tgcactccgc gcttgttgat ctgcgcggcg
     8581 gccccaacgg ccttttcgag gacgaagtcg gttagcttgc cgatacgatt atgttgctcg
     8641 gcggcagcca cgaattccga ggctgcgatc gggccttttt ccgggtgagt ccaccgcgcg
     8701 agggcctcgg cgccaacaat ccgctgcgtc ttcatgtcga gcttgggttg gtaggctacc
     8761 caaacttccc cgcggtcgat ggcttcgtcg agctggctca gcatcgacag tttccacgac
     8821 gcattctcga gcgtctctgg atcgtagaac ttccatttga ggccgtcgtg cgcggcttct
     8881 tcagccgcga ccagcgcact tgcaagccgg tttgcaaccg agcgcccgct tccgacttcc
     8941 acgccaaacg cgaccgtcaa gtcgattgac aggccggccg cgcgcgccgg gttccggaat
     9001 agagaataaa gcgcatcgag atgattgccg aatggagcgt tcggctcctc aaaccaggca
     9061 aagatgccgc cgtcaccctg gtacaatgct cgatccggcg aaccgatcgt cagacgcgag
     9121 agaatctgat cgacgatctg ccgttcgccc tccggaggca gggtcgcggt gatttcctcg
     9181 taattaaaga tgcgcgccgc gatgagcgct ttcgacttgc cgttggggtc tgcacgaagc
     9241 gcgtcaagat tgggtagacc ggtgagcgag ttggtaagac cgcgttgttt cagcgtgcgc
     9301 caggtgtaga cgccccagct tgcggaaagg accagcagcg acagcgcgtt gtcgacgaag
     9361 atcagctggc tttcgaatgc taccgggccg agcagcaaca aagcaaggct ggcgccgaaa
     9421 acaaaattct gctgtgtcca ggttccccgc gtgaccgcaa ggatgatcaa tcccaacgtc
     9481 aggagcattg ccggcatcca gccgagatcc acggggttcc cgacccgtaa tgtctcggcg
     9541 ccgaggatct ggatgtagac gccgcccatc ttgccgatgc ccggaagata atattgatcg
     9601 ttgagcgcgt cgctcgtcgc gccgatgatt acttccttgc cgcgaacgat gcggggatcg
     9661 aacttgcccg tgatgacgtc ggcagcgttt accgtaggca cggtgcgggg gtcgaatgaa
     9721 tagtcgacca tgaacgtgcc ctgccgagga gcgcgccccg caagccttga agccatcgac
     9781 gggatgagct tgccaccgac gcttacgccg tagggcaagc gccagaccgc gttctgatag
     9841 ttgtaatgga cgccgatcga ggcaagcgct gcatggcgcg tgaacatcga caaggaggcg
     9901 aggctctgct gcgtcgagcc gtccgggccc caagcgcccc gcgccgcgag gattacccga
     9961 cccgatcgct cgattgactc tgccaacaag cgatcatcgc gagcatcgct gtgcgtctcg
    10021 aacgtcatgt cgaatgcgat atgcttcgcg ccagcggcgg tcagtcggtc gatgagctgc
    10081 gcgtgatcac gccgcggcca gggccatcgc ccaattgcct ggagagtatt gttgtcgaca
    10141 ctgacaagga cgatctcgcc gctcgtcgcg tgccggtgga actggttgcg tgcggcgcgc
    10201 aggagctcgt cggctggcaa ggcaaccaac gtcagaacaa tgccaagcag ggtcgtcccc
    10261 aggacgaggc gaacaagtga ccagtttgct tttatcgtgc gccaacccac gagcgctttt
    10321 tcctccaagc tcctgggcac agatgcgcgc gtaaaggtta gaaaattgat aactgcgttc
    10381 gaattaacac cgcgccttca ccacgtttgc ctctgtccta gcgcgaactt ttgtgcatga
    10441 ctgttgctga tgaaccttga acgcgagccg acaggcgaaa atacatgctg gtgctgccct
    10501 aaagccagcc ggtgcccgtc agctttcgaa cgagcgaact tggtggactt gctcccgaca
    10561 caggaggact gatggacttt atttccatcc tttcgatttt cgttctggca tgtttcgtcg
    10621 gctattatgt tgtctggtcg gtgacgcctg cgctccacac gccactgatg agcgttacca
    10681 acgcgatctc atcggtaatc gtcgttggag cgctgatcgc ttcggcagcg cccggcgtgc
    10741 ctggatcgaa atggctcgga ctggtcgccg tggcgcttgc gtccgtgaac atcttcggcg
    10801 gctttgccgt gacgcagcga atgcttggca tgtacaagag gagggagcgc aaggatggtt
    10861 gaggccgcgc cggcacaacc cgcctgggtg ctgctcgcct atctgatcgc gggcatttgc
    10921 ttcatccttg cccttcgcgg gctgtcgaac cccgagagca gcaggcgggg caatttaacg
    10981 ggcatgatcg gcatgacgat cgccgtcgtg acgacgctcg cgacgcatgc gatcgcaacg
    11041 cttccggaga tcatcgctgc aatggtcatt ggtggcggca ttggcctcgt gaccgcgcgg
    11101 aagatccaga tgacggccat gccgcagctg gtcgcggcgt tccacagcct cgtcggcttc
    11161 gctgcagtgc ttgttggtgc tgccgcttac ctgaaccccc tggcctttgg catcggcgtt
    11221 cgagtgacgc cgatcgcgtc gccctcgttc atcagcattc tgccggtaag ccgcatcgag
    11281 atggggcttg gcgttgcgat tggcgcaatc accttctcag gatcggtcat cgcttttctg
    11341 aagctcaacg gcaacatgtc gggcaagcca atccttctgc cgcttcgcca tgtcatcaac
    11401 ctcgggacgc tcgccgcgat cctcgtgctg attgcctatt tcacgcagga ccagtcaccc
    11461 tgggtgttcg ggctcgtcgc gggcttgagc ttcgcgattg gatttctgct catcatcccg
    11521 atcggcggag cggacatgcc ggtcgtgatc tcgatgctga acagctattc cggctgggca
    11581 gcggcagcca tggggttcac tctccacaac agcgcgatga tcatcaccgg tgctctcgtg
    11641 ggaagctcgg gcgcaatcct ttcgtacatc atgtgccgag cgatgaaccg cagcttcatt
    11701 tcggtgatcg ccggcgggtt tggcggcgct gacacgagtt ctggcgccgc tgccgccatc
    11761 gacaggccgt acaaacgggg atcggctgaa gatgctgcgt tcctcatgag ccaggccgag
    11821 caggtgatca tcgttccggg ctatggaatg gccgtcgcgc aggcgcagca cgccgttcgc
    11881 gaaatggcgg atctcctcaa agcgaagggt gtgcgtgtaa aatatgcaat ccacccggtt
    11941 gcgggccgta tgccgggcca catgaacgtt ctcctcgcgg aagctaatgt tccctatgac
    12001 gaggtgttcg agctcgagga cataaacagc gactttgcgc agaccgatgt cgcttacgtg
    12061 atcggcgcca atgacgtgac aaaccccgcc gcgcggacgg acaagagctc gcccatctac
    12121 ggtatgccgg tgcttgatgt cgaaaaggcg cgaacggtcc ttttcgtcaa gcggtcgatg
    12181 ggcggtgttg gctatgccgg catcgacaat gacttgttct accgcgacaa cacgatgatg
    12241 cttcttggtg acgcgaagaa aatgaccgag gaaatcgtca aggcgctcag ctgagcagga
    12301 ttatgaacaa gatcgtcgca actgctgtta aattgttggt aaatcgctga tttaccgctt
    12361 gccgcgagcg gttcgttgac cgcatgaatt ggtaacgtga cgcggccgcg attctcaagc
    12421 gtcgtcgcga cggataccgg ggaaggggaa ttaacgtgcg caagctgggc atcatcggcg
    12481 ggacgagctg gtcgtcgacg gcgctttatt atcagcatat caatcgcggc gtcgcgcagc
    12541 ggctcggtgg cctccacagc gcgcggttgg taattgaaag tctcgacctt gcgccctttg
    12601 ccgagatgga gctttcgggc gactgggacg gcgttgcgcg cgagacgctc gacgcggcga
    12661 ggaggctcga ggcggccggc gctgacggtg tcatcattac ctcgaacacc ggccataagg
    12721 tctatgacgc ggttgctccc aaaatcggcg tccccatgct gcatattgcc gatgcga
//
LOCUS       DASRBJ010000025         3125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_611396,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000025 DASRBJ010000000
VERSION     DASRBJ010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3125
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_611396"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1247)
                     /locus_tag="VE968_00810"
     CDS             complement(<1..1247)
                     /locus_tag="VE968_00810"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HZU50393.1"
                     /translation="MADLFLSYARGDEQRAEEVAAALRASGYSVWRDDELPAHRGYAD
                     VIQERLNSAKAVVVLWSAQAAKSHWVRSEAEAARQRNTLVQATLDGLVPPMPFDQIQC
                     ADLTRWQGHASTPGWHKLLSSVADLAGSAEGTPRANRRPVSVCVLPFQNMSGEAEQEY
                     FSDGISEDITTDLSKVSALEVIARNTAFTFKGQLVNVREVAKRLGVTHVLEGSVRKAG
                     NQVRITAQLIDGASGGHVWAERFDRDLTGIFAIQDEISTAIVAALKLKLLPNEKRAIE
                     QRGTKSADAYNLYLLARQYWLTGNIGDQRREERVMRIGARAVEIDPYYARAWALLAMA
                     QSNLRYGFRCLVDDGVAAANSALTIDPAIAEAHLPMVRRLEDRRSFAEADAEMEAAIR
                     LDPESWEVNKEAARVAMRQRRIK"
     gene            complement(1516..1821)
                     /locus_tag="VE968_00815"
     CDS             complement(1516..1821)
                     /locus_tag="VE968_00815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50394.1"
                     /translation="MRIALAIPLLLLGACNVTKDGNSVTVQYDQNTAQNTAADIGNTA
                     QNIGADIANDVQKTGEKIENKVGNTDVSVKVDKSEQTNSASGETTTTTKTTKTEKSH"
     gene            complement(1845..>3125)
                     /locus_tag="VE968_00820"
     CDS             complement(1845..>3125)
                     /locus_tag="VE968_00820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016745236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HZU50395.1"
                     /translation="ALAGDHYAWDIAEGLTTEVGQRLAATESEERARAWAVKRLVALG
                     FSNVHVEPFTMPVWTRGHEAAEILAPFPQKLAVTALGYSGSTGEAGVTGEIAYFDSVD
                     ALRLVPDAAVRGKIVFIDHHMARTQDGSSYGQFGAARRIGPTIASKKGALAIVVRSIG
                     TDHHRNPHTGVQYFTDGAAPIPAGALSVPDAEQLVRILKRGQPVTMHLTLVTERHENG
                     RSGNVVADVPGRDPNGPILLVGGHLDSWDLGTGAIDDASGLAIVTAAAKHIMDAGRPR
                     HTIRIVWFGAEEPGGLGGVAFAKAHSSDRYALAGESDLGADRVWRFSSELSKSDTPAY
                     AQLTAVLAPLGIVKNDNGEADGTDIEPTVANGAPWISLNQDALRYFDWHHTADDTLDK
                     IDPAQLRQNVAAWTAVLAVLSGGIEPGAKQPERR"
BASE COUNT          571 a          956 c          910 g          688 t
ORIGIN      
        1 tcttttatcc gccgctggcg catcgcgacg cgcgccgctt ccttgttgac ctcccacgac
       61 tcagggtcga gacggatcgc cgcctccatt tcggcatccg cttcggcaaa gcttctccgg
      121 tcctcaagcc ggcgaaccat cggcagatgt gcttccgcaa tagcgggatc gatggtgagc
      181 gcggagttcg ctgccgctac gccgtcgtca accaggcacc ggaacccgta acgaaggttt
      241 gactgcgcca tggcaagcag ggcccaagct cgcgcataat aagggtcgat ctcgacggcg
      301 cgcgcaccaa tgcgcatgac gcgctcttcg cgcctctggt ccccaatgtt tccagtcagc
      361 caatattggc gcgcgagcag gtagagattg tacgcgtcag cactcttcgt tccgcgctgt
      421 tcgattgccc ttttctcatt tggcagcagc ttgagcttca gagccgcgac tattgccgtc
      481 gagatctcat cctgaattgc aaagatacca gtgagatcgc gatcaaaacg ctcggcccat
      541 acatggcctc cgctggcgcc gtcgatgagc tgcgctgtta ttcgcacctg gttcccggcc
      601 ttgcggacac ttccctcgag gacatgggtg accccgagcc gcttcgcgac ttcacggaca
      661 ttcactaatt gacctttgaa ggtgaatgcc gtgttgcgcg cgattacctc gagtgctgag
      721 acctttgaaa ggtcagtcgt aatgtcttca ctgatcccat cactgaaata ttcctgttct
      781 gcttcgccgc tcatgttctg aaaggggaga acgcagaccg agaccggccg tcggttggcg
      841 cgcggtgtac cctcagccga ccccgctaga tccgcaacgc ttgaaagcag tttgtgccag
      901 cctggcgtcg acgcgtgtcc ttgccaccta gtcagatctg cgcactggat ctggtcgaac
      961 ggcattggcg gtacgaggcc atctaaggtt gcctgcacga gcgtattgcg ttgccttgca
     1021 gcctccgcct cggatctcac ccaatgggat tttgccgctt gcgccgacca aagaacgacc
     1081 acggccttgg ctgagttaag ccgctcctga attacatcgg catagccacg atgcgccggc
     1141 agttcatcgt cgcgccagac gctgtaaccc gaagcgcgaa gtgcagcggc gacctcttct
     1201 gcgcgctgct cgtcgccgcg tgcataggaa agaaaaaggt ccgccattcg aactccctct
     1261 cgagctcggg atatcaggac tctcatggta agtcatgcga gtcggcagtt tgcgggcgag
     1321 ggctttgccg cggcggtcac cggtagcgcg ccggatcccg gtcacgtttg tcgccgctcc
     1381 cgcgcgcgct catcggcggc aaaaggcagg caacctgaag ctaagatgag cgtcgattta
     1441 gcttaactta tggcgtccag atcgcccgct tttgttgaac gggtgactct cttctcttga
     1501 gccaaccggt tctacctagt gcgatttctc ggtcttcgtc gtcttcgtcg tagtggtcgt
     1561 ttcgccagag gcagagttcg tctgctcgct cttgtcgacc ttgacgctga cgtcggtgtt
     1621 gccgaccttg ttttcgattt tttcgccggt cttctgaaca tcattcgcta tgtcggcgcc
     1681 aatgttctga gcggtgttgc cgatgtctgc agcggtattc tgggcagtat tctggtcata
     1741 ctggaccgta accgagttac cgtccttcgt gacgttgcaa gctcccagaa gcaggagcgg
     1801 aatagcaaga gcaatgcgca taggttcctc cctagttcgg gcactcaacg ccgctccggc
     1861 tgtttcgctc ccggttcgat tcctcccgac agtaccgcga gtaccgccgt ccatgcggcg
     1921 acattttgcc tgagctgcgc aggatcgatc ttgtcgagag tgtcatccgc cgtgtggtgc
     1981 cagtcaaagt agcgcagcgc atcctggttg agcgaaatcc atggcgcacc gttggcaacg
     2041 gtgggttcga tgtcggttcc gtccgcttcg ccattgtcgt ttttaacaat tccaaggggg
     2101 gcaagaactg cggtcagttg cgcatatgct ggagtgtcgc tcttcgacag ctcggaactg
     2161 aagcgccata cacgatcagc accaaggtcg ctctcgccag caagtgcgta acgatcgctc
     2221 gaatgtgcct ttgcaaacgc gacgccgccg agcccaccgg gttcctcagc tccgaaccac
     2281 acgatcctga tcgtgtggcg ggggcgaccc gcatccatga tgtgcttggc ggctgcggtg
     2341 acgatcgcca gtccagacgc atcgtcaatc gcgccggtgc caaggtccca gctgtcgaga
     2401 tgtccaccca caagcaggat tggcccgttc ggatcgcggc ctggcacatc agcgacgaca
     2461 ttgccggagc gaccattctc atgacgttcg gtgacgagcg tcaaatgcat tgtcacgggc
     2521 tgtccgcgct tgaggattcg aacgagctgc tcggcatcgg gcacggataa ggcgccggcc
     2581 ggtatcgggg cagcgccgtc cgtgaagtac tggactccag tgtggggatt gcgatggtga
     2641 tccgtcccga tcgagcgaac gacaatggcg agggcacctt ttttggatgc tatcgtcgga
     2701 ccgatgcgcc gtgccgcgcc gaactggccg tagctcgaac catcctgcgt tcgagccatg
     2761 tggtgatcga tgaagacgat ctttccgcgg acggcggcat ccggaaccaa tcgaagcgca
     2821 tcgacactgt cgaaataagc aatctcgccg gtcacgcccg cttcgcccgt tgatccgcta
     2881 tatcccagcg ctgtcacggc gagcttctgc ggaaatggtg cgaggatctc cgcggcttcg
     2941 tggccgcgcg tccacactgg cattgtgaag ggctcgacat ggacattgga aaaaccgagc
     3001 gcgacgagcc gcttaacggc ccatgcgcga gcacgttctt cggactccgt cgcggctagt
     3061 cgctgaccta cttcggtcgt taggccctcg gcgatgtccc aagcatagtg gtcaccggca
     3121 agggc
//
LOCUS       DASRBJ010000026         2032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_714675,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000026 DASRBJ010000000
VERSION     DASRBJ010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_714675"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1223)
                     /locus_tag="VE968_00825"
     CDS             complement(<1..1223)
                     /locus_tag="VE968_00825"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HZU50396.1"
                     /translation="MATQGIEQVTENAIRAVARDCGSLSMECSDVAGYVKGVSDRIGE
                     HMKMLDQLEEVTTRLLGDQARVSDSTDEARLLSEQAKAKLEAGRAAIEGTIEGFKGLT
                     ELIVQLGERMAGFASAMSQVQTVSSTIETIARKTNMLALNATIEAARAGDAGRSFAVV
                     AAEVKKLAHDTRAATSQIASTIGELTREASAVTTEIKTGVERSRAAQSGFGTISETVR
                     EVSDIVGMVDRQTEGIAHSTSMIQTSVDRVKAGLTDFAADARENGKELLTAEKRLAHL
                     EMLSNTMLDTLANSGAEIDDTPFILRAQETCRRIQLAIEKAIETGEVSIEDVFDQDYR
                     IVEGSNPVQYEVRFNDAADRLVRPILDASENSDGRIIGCAIGDMNGYLPTHLSKRSHP
                     QGKDPVWNDEHCRNKR"
     gene            complement(1477..>2032)
                     /locus_tag="VE968_00830"
     CDS             complement(1477..>2032)
                     /locus_tag="VE968_00830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007015285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1343 domain-containing protein"
                     /protein_id="HZU50397.1"
                     /translation="WLNPSPNAANVNMARAYAGTVMLEGTTLSEGRGTTRPLELFGAP
                     DLEPARIMAEMERLSSRWLAGCKLREVTFQPTFHKHVGQMCRGLFIHAEGPFYEPEQF
                     RPWRLQALAFKAIRRLYPEYPLWRDFPYEYVFDKLAIDVINGSTLLRDWVDDHDAEAA
                     DLESITSADEREWAEERQSYLLYS"
BASE COUNT          362 a          636 c          580 g          454 t
ORIGIN      
        1 cgcttgttgc gacaatgctc gtcgttccag acgggatcct tgccctgagg atggcttcgc
       61 ttgcttagat gggtgggaag gtacccattc atgtcgccga tcgcgcatcc tatgatgcgc
      121 ccatccgaat tctcgcttgc atcgagtatc gggcggacaa gtcgatcggc cgcatcattg
      181 aaccggactt cgtactgcac cgggttcgaa ccttcgacga tgcggtaatc ctggtcgaac
      241 acgtcttcga tgctgacctc gccggtctcg atcgccttct cgatcgcgag ctggattcgg
      301 cggcaggttt cctgtgcgcg tagaatgaac ggcgtgtcgt cgatctccgc tccagaattt
      361 gcgagcgtgt cgagcattgt gttcgagagc atctcaaggt gggcaagccg cttttcggcg
      421 gtcagcagtt ccttgccatt ctcgcgcgca tcggccgcga aatcggtcaa gccagccttc
      481 acacgatcga cgctcgtttg gatcatgctg gtcgaatgag cgatgccctc ggtctgtcgg
      541 tcgaccatgc cgacgatgtc gctcacttcg cgcacagtct cactgatcgt gccgaagcct
      601 gactgagcgg cacgactgcg ctcgacgcca gtcttgatct cggtcgtgac tgcgcttgct
      661 tctcgggtca gctcgccaat ggtcgaggca atctggctgg tcgccgcgcg cgtgtcgtgg
      721 gcgagctttt tcacctcggc agcgacgacc gcgaagctcc gcccagcgtc gccggcgcgc
      781 gctgcttcga tcgtcgcgtt cagggcaagc atgtttgtct tgcgtgcgat tgtttcgatg
      841 gttgatgaaa ccgtctgaac ctggctcatt gcagacgcga agccggccat tcgttcacca
      901 agctgaacaa tgagctcggt cagacccttg aagccctcga tcgtgccttc gatggccgcg
      961 cgcccggcct cgagcttcgc tttcgcctgc tctgaaagga ggcgcgcttc atcggttgaa
     1021 tcactgacgc gggcctggtc gccaaggaga cgcgtcgtca cttcctccag ctggtcgagc
     1081 atcttcatat gctcgccaat ccgatcggaa acccccttca cgtatcctgc gacgtcgctg
     1141 cactccatcg acagcgaccc acaatcacgc gctaccgctc taatcgcgtt ctcggtaact
     1201 tgctcaatgc cctgtgtggc catgaacggc gcgctcctcg cgtcaaaacg tagagcctgc
     1261 gataggcagg aacctcctac ttcttcgtta accaagcgac tgatgccgcc ttggtagcga
     1321 aagtgccact ggttcagaag aacgccctcg cttgttcaga gcggcgcgga cgagagccgt
     1381 ggcgccgccc gctcttagtt tccaagggaa ggcagtcgcc ttacatctct ttccttgaag
     1441 accggcaccg gctgctccgc cgccatgacg cggcgatcac gagtatagga gatacgattg
     1501 tctctcctca gcccattctc gctcgtctgc tgatgtgatg ctttcaagat ccgccgcctc
     1561 agcgtcgtga tcatcgaccc agtcccgcag caaggtcgac ccgttgatca cgtcaattgc
     1621 gagcttgtcg aacacatatt cgtaagggaa gtcgcgccac agcggatatt cgggatagag
     1681 ccgccgaatt gccttgaagg cgagcgcctg gagtcgccac ggcctgaact gctctggctc
     1741 gtagaacggc ccttcggcat gaatgaacag gccgcggcac atttgcccga catgtttatg
     1801 gaacgttggc tggaaagtga cttcgcgaag cttgcatccg gcaagccagc gcgacgaaag
     1861 cctttccatt tccgccatga tccttgcggg ctcgaggtca ggcgccccaa agagctcgag
     1921 tggccgcgtc gtacccctgc cctcgctaag tgtcgttcct tcgagcatca ccgtgcccgc
     1981 ataggcgcgc gccatgttga cgttcgcagc attggggctg ggattgagcc ac
//
LOCUS       DASRBJ010000027        10236 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_357838,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000027 DASRBJ010000000
VERSION     DASRBJ010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 10236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10236
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357838"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1531
                     /locus_tag="VE968_00835"
     CDS             <1..1531
                     /locus_tag="VE968_00835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003043535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HZU50398.1"
                     /translation="PDAGKTTLTEKLLYSAGAIHEAGEVRARGDRRRARSDWMAIEQQ
                     RGISVTSSVMTFRHENILFNLLDTPGHQDFSEDTYRTLTAVDSAIMVIDAAKGIEAQT
                     RKLFEVCRLRNIPIITFINKVDREGRSPFELLDQIAEVLQLDVSPQNWPIGLGGLFHG
                     LYDFGANSLVTVDKKDGLSIGSLLPCTGLDDPLIDTLIPAQAADVLREEGGLASEAYP
                     QFDRAKFDSGDLTPVYFGSALKLVGVRQLLMGLARYAPAPQPQPALPSPVDPREARVT
                     GFVFKVQANMDPNHRDRIAFLRVCSGALKRGMKLANPRLGKSIAIHNPITFFAADREL
                     AEVALPGDIVGIPNHGTLRVGDTLTEKGELAFTGLPDFAPEILRRVRLDDPLKVKQMR
                     RGLSDLAEEGVIRLFKPAIGSQWIIGVVGELQLDVLATRMEQEYGVKLGFEESPWAVA
                     RWLSSDDPLRLKRMIETNRANMAEDQDGAPVLMMRNDWEFGRFVEECPGIEFLAIRER
                     L"
     gene            1717..2013
                     /locus_tag="VE968_00840"
     CDS             1717..2013
                     /locus_tag="VE968_00840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007704477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="autorepressor SdpR family transcription factor"
                     /protein_id="HZU50399.1"
                     /translation="MTQVFKALSDPTRRRVLQLLRKRPMSAGEISEKFDVSKATMSAH
                     FAVLKEADLVHSRKSGKSVIYHLKLSVLEEALLGFIDSLNAGADIPTPSKETAS"
     gene            2010..2384
                     /locus_tag="VE968_00845"
     CDS             2010..2384
                     /locus_tag="VE968_00845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007704493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HZU50400.1"
                     /translation="MKKGLTEALAWAGIMLGLAAAAVAAQRMGYVDHVTATRLTTGIF
                     GIWMVWYGNRIPKTFAPSECVRRVQKVSAWSMILSGFTYAILWAFAPVPIALSAGMAV
                     ILTSIVVTLGYCVSLHVRRKAG"
     gene            complement(2480..3481)
                     /locus_tag="VE968_00850"
     CDS             complement(2480..3481)
                     /locus_tag="VE968_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HZU50401.1"
                     /translation="MNQFARLFASVTLLAVLSSPPARAQGAPKSAALELAKEAERLRP
                     GQWVWKPEIAPKGPILVYVDLGRQLATVYRNGIRIGVSTISSGRPGYETPTGVFTILE
                     KNKEHISRKYNDAPMPYQERLTWGGVALHAGGLPGYPESHGCVHLPLAFSKLLYGSMP
                     LGGTVIIAGGHEDPVKRPPAGVLAPAIAGATTVRAASLDSDANFTWNPAAALSGPVSI
                     IVSTGDQQVVVLRNGVEIGRAHADVQQQTSEPQVMTLAAGKDKQWIEVGVSELTAQHA
                     EVISTERVEQMHLPAEFVKDMRSAITPGTTVLVTQASVTGASTGVQTTVLDSDPPAK"
     regulatory      3678..3835
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            3932..5794
                     /locus_tag="VE968_00855"
     CDS             3932..5794
                     /locus_tag="VE968_00855"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU50402.1"
                     /translation="MIASFLLAAADVVVAPADQSNTIVVTASRAPEKAKDSAASVTVI
                     DDEAITRQGDPLVYDFLREIPSAAVSSSGPAGSVTQVRIRGSEANHTLLFIDGIEAND
                     LSGSDQPRFELLNADIASRIEVVRGPQSALWGSQAIGGVINIAGTADRSGYGAAAEGG
                     SYGFLRGSAAGSLISGNMQVAGALGWQRATGIDESGTGGDRDGYHNLSGRALASWTIA
                     PDVRIGINGFSLNGYSQYDGTDPFTFAPTQKLSTRFGMSAGRFWSAFGSSDDGLSGSV
                     SASLFDARNHFLFDGDETNRTSGVRKTISGQLQYAFIAGAIKNQLVAAADYQNENFKS
                     SDTVYGGLSDANKRRVNQAITGEWKAEAGTIVADVAVRHDFFNEFKGATTLRASLLGH
                     LGGGFSVAGSYGEGIAPPTFIEMYGFFPGTFIGNRNLRPETSRGYEVSVRYAKGRFDA
                     AVTGYRQRLHDEIVNNSDFTSSINAPGTSYRSGVELEAGWHLAEKLRLSANYAYLHAT
                     QPNDLGEQVEEIRRPKHSGSIALDGSSNRLTYGASLAYVGAHRDTDFDLFPSKDVQLG
                     SYWLASARLAYAIRPGIELFVRGSNLLNQHYEDVIGYRTEGRGIYGGFRLSHFR"
     gene            5939..6313
                     /locus_tag="VE968_00860"
     CDS             5939..6313
                     /locus_tag="VE968_00860"
                     /inference="COORDINATES: protein motif:HMM:TIGR02246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgcJ/EcaC family oxidoreductase"
                     /protein_id="HZU50403.1"
                     /translation="MSDDERAIRAVVDQWMAASKAGDTASVLNLMCDDALFLTMGREP
                     FGKREFLDASEALKHISIDGQASIEEMEVIGDRAWVRNHIELTITHPENAPVYRSGET
                     LTIFRKGQDGRWRLFRDANLVS"
     gene            complement(6382..7293)
                     /locus_tag="VE968_00865"
     CDS             complement(6382..7293)
                     /locus_tag="VE968_00865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50404.1"
                     /translation="MTTAPSYEALLETSKRVNWRLEDVIGGDRHFDFSRPFLPESFAR
                     TSAVTFLTPDEQLKLNQIRAFGYVSMFELVERCILPYLDAQIPSDPGQDSCRSAALTQ
                     FAREEHKHIELFVRFRDEFAACFGHQCGFIGPAEEIGAAIRNHSDLALAIFTLAIEWG
                     TQRHYVDSIRDNEALDPQFKSLFKHHWLEESQHVKLDALVFRELTMSAPAEQVENAVD
                     EFLEIGAFVDGGLKQQAELDRQSLEAVIGRQLPAQQALQLVEQQHQAMRWTFIGSALV
                     NKGFLEALENVSPAARAKIDAIASVFC"
     gene            complement(7356..7640)
                     /locus_tag="VE968_00870"
     CDS             complement(7356..7640)
                     /locus_tag="VE968_00870"
                     /inference="COORDINATES: protein motif:HMM:NF025392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4242 domain-containing protein"
                     /protein_id="HZU50405.1"
                     /translation="MSQLKRYLVEREIPGIGGMSIVELCGAARASNQALEKLSPKIQW
                     QHSYVAGDRTFCIYLADGEETIRTHGEMSGIPVTRITEVPQIIDPTTANN"
     gene            7750..8685
                     /locus_tag="VE968_00875"
     CDS             7750..8685
                     /locus_tag="VE968_00875"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HZU50406.1"
                     /translation="MVAPAHLKSLQALEMAIRVGSLKRAAELLGITPAAVGQRVKTLE
                     AYLGVNLLERGRTGIRASPELRLAMPRLKSAFADLEAAAAELDLQRAHEIHIAAISDF
                     AELWLRPRLEAFRMLHPNILFSINGEGTAPARFGKVDCEISFRAIPEGDKHLTLFRDF
                     VVPISSPVNFERTASLPARTRLEGFPLLHLDFYRNDPVGLSWPEWFRRNGIERTAPER
                     GIRFQLIGALLDAVEANAGISLCGLALIAERVDAGRIKLPYPIATGSRTRFGFVAEFR
                     SDLSRRPFALFRDWLLDEARMTSDWIERAIQARDK"
     gene            complement(8750..9505)
                     /locus_tag="VE968_00880"
     CDS             complement(8750..9505)
                     /locus_tag="VE968_00880"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HZU50407.1"
                     /translation="MKLPDESRPSFRLKAIPLLVTVLLAFGVPILAAKAAALCSTVWH
                     TPSPHGPTLPWLYMQHGFQLLLALIVIFIMKRFLDVDFGLHLPRGKTYLWPAIAWGAA
                     FGILMTLVDYAPELLAAAKPKIGYPLTSPNVAGWLFFEGAYVGPTEEIPFRSLLVTYL
                     AATMPGRLRLGRFEMNWAGVFVALIFALLHATNFDVRAWPLALGQQIYAFALGVLYAY
                     WLEKSGSVLAPMVGHNASDVVEYLILFTWVGLL"
     gene            9710..>10236
                     /locus_tag="VE968_00885"
     CDS             9710..>10236
                     /locus_tag="VE968_00885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50408.1"
                     /translation="MRGPFRTIIFSALLGVSGIAQAECSVSSDHDAGVRSLNPAVKSD
                     VDLIVSMTILPKMMHVDYRTAAMKTGCNLGPFIAGNVTYELWGEDNGGRQRKAVAAKE
                     GAPVALVLPVVDLMKAIENQRQGRSAQVEGYLLATITKDDFTAWRYYTGMPDPATLKE
                     DMASVLAGNGSPIFRA"
BASE COUNT         2093 a         3049 c         3037 g         2057 t
ORIGIN      
        1 ccctgacgcg ggcaagacga ccctcaccga gaagctgctt tattcggctg gcgcaatcca
       61 cgaggcgggc gaggtacgcg cgcgtggtga tcgccgccgt gcccgctcgg actggatggc
      121 aatcgaacag caacgaggca tctcggtcac gagctcggtg atgaccttcc ggcacgagaa
      181 tatcctgttc aatttgctcg acacgccggg gcaccaggat ttctcagagg atacctaccg
      241 gaccctgacc gccgttgaca gcgccatcat ggtgatcgac gcggccaagg gcatcgaagc
      301 gcagacgcgc aagctcttcg aggtttgccg acttcgcaac atcccgatca tcacgttcat
      361 caacaaggtc gaccgcgagg gtcgaagccc tttcgaattg ctcgaccaaa tcgccgaggt
      421 tctgcaactc gacgtgagcc cacaaaattg gccgatcggt ctcggcggcc ttttccacgg
      481 gctttatgat tttggcgcga acagcctcgt caccgtcgac aagaaagatg ggctttcgat
      541 cgggtccttg ctgccatgca ctggtctcga cgacccgttg atcgacacgt tgattccggc
      601 gcaggcggcc gatgtccttc gcgaagaagg cggactggca agcgaggcat acccgcagtt
      661 cgatcgtgca aagtttgatt ccggcgatct gacgccagtc tattttggaa gtgcactgaa
      721 gctggttggc gtcagacagc tactcatggg actggcgcgc tacgcgccgg caccacagcc
      781 acagccagcg cttccttcgc ccgtcgatcc gcgggaggca cgtgtgaccg gcttcgtgtt
      841 caaggtccag gcgaacatgg atccgaacca ccgcgatcgg atcgccttcc tgcgcgtctg
      901 ctcaggagct ctaaagcggg gaatgaagct cgccaacccg aggctgggca agtcaatcgc
      961 catccacaac ccgatcactt tcttcgcggc tgaccgggaa ctcgccgaag tcgcgcttcc
     1021 tggcgacatc gtcgggattc ctaatcacgg aacgctccgg gtcggcgata cgctcactga
     1081 aaagggcgaa cttgccttta ctggccttcc cgatttcgcg ccggagatct tgcggcgagt
     1141 ccgcctcgac gatccattga aggttaagca gatgcgccga ggacttagcg atctcgctga
     1201 agagggagta atccgactgt tcaagcccgc gatcggatcg caatggatca tcggcgtcgt
     1261 cggcgaactg cagctcgacg tgttggcgac gcggatggaa caggaatatg gcgtcaagct
     1321 cggcttcgag gaatcgccgt gggcggtcgc acgctggctt agttcggacg atccgcttcg
     1381 actcaagagg atgatcgaaa ccaaccgcgc aaacatggcc gaggaccagg acggcgcacc
     1441 cgtattgatg atgcgcaacg attgggaatt cggccgattt gtcgaggaat gtcctggaat
     1501 tgagttcctc gcgatccgag agcgcctgta agttctcggt tggcgcccag ataagcgcga
     1561 tggtgcacgc tccgttttcg tcgatgcacg aggacgtaat cacaaaagcg caggcgcttc
     1621 cagatgagct tgcgcggctc gggatgaatc gtggccaatc gcacaaatgt gccgcgatgg
     1681 attgattcat ttagacattt agctaaatgt catatcgtga ctcaggtctt caaggcactt
     1741 tccgatccaa cgcgccgccg agtgcttcag ctcctgcgca aacgaccaat gagcgctggc
     1801 gaaatcagtg agaagtttga cgtttcaaaa gcgaccatgt cagcccactt tgccgttctg
     1861 aaagaggcgg acctcgttca ttcgaggaag tcaggcaaat cggtcatcta ccacctgaaa
     1921 ctttccgtgc tcgaagaagc cctgcttggg ttcatcgatt cattgaacgc cggtgctgac
     1981 attcccaccc cgagcaagga gactgcatca tgaaaaaggg tttaactgaa gctcttgcat
     2041 gggctggcat catgctcgga ttagccgccg ccgctgtagc cgctcagagg atgggttacg
     2101 tcgatcacgt gaccgcgacg aggctcacaa cgggcatctt cggcatttgg atggtttggt
     2161 acggaaacag aatcccgaag accttcgcgc ccagcgagtg cgtgcgaagg gtgcagaagg
     2221 tttccgcatg gtcgatgatc ctcagcggtt tcacctacgc gatactatgg gcattcgcgc
     2281 ccgttcccat tgcacttagt gccggcatgg cagtcatact cacaagcatc gtcgtcacgc
     2341 tcggctattg cgtctcgctg cacgtccggc ggaaagcggg ttgaccaagc agcgggcaat
     2401 caattcccgt ccgttgtccg tgctcagctc cccccggaat ggttccggct tctgccggca
     2461 gcgcgcttgt gatcgtgggt cacttcgcgg gtgggtcgga atcgagtacc gtcgtctgaa
     2521 ctcccgtcga cgcgcccgtc acgctcgctt gcgtgacgag aacagtggtg ccgggcgtga
     2581 ttgctgaacg catgtctttc acgaattcgg ccgggaggtg catctgttcg acgcgctcgg
     2641 tcgagatgac ttccgcgtgc tgcgcggtaa gttcgctcac cccgacttca atccactgct
     2701 tgtccttgcc ggcggccaag gtcatcacct ggggctcact ggtttgttgc tggacgtcag
     2761 catgcgcgcg gccgatctcc acgccgttgc ggagcaccac cacctgctgg tcgccggtcg
     2821 aaacgataat agagacgggg ccgctcagcg ctgccgccgg gttccacgta aagtttgcgt
     2881 cggaatcgag cgatgccgca cgaaccgttg tcgccccggc aattgctgga gcgagcacgc
     2941 ccgcgggagg ccgcttgacg ggatcttcat ggccgccagc gatgataacc gtcccgccaa
     3001 gcggcatgga gccataaagc agcttcgaaa aggcgagcgg caaatgcacg catccgtggc
     3061 tttcaggata acccggcaag ccacccgcat ggagcgcgac gccgccccac gtcagccgtt
     3121 cctggtaggg catcggcgcg tcattgtact tgcggctgat gtgctccttg ttcttttcga
     3181 gaatcgtaaa aacgcccgtc ggcgtttcat acccggggcg gccgcttgat atcgtcgata
     3241 cgccgatccg aatgccgttt cgatagaccg tcgcaagctg ccgtccgagg tcaacataga
     3301 cgaggatcgg ccccttgggc gcaatctcgg gcttccacac ccactgaccc ggcctcagcc
     3361 gctccgcctc cttcgcaagc tcgagcgcag cggatttggg cgcgccctga gcgcgcgcgg
     3421 gtggcgacga aagtaccgcg agcaaggtca cggaagcgaa aaggcgcgcg aactggttca
     3481 tcgatgcccc catcaacgcc cgtacattca taacctcatt ggaaccggcg caaaagtcgc
     3541 gctgctgcgc gcgagaagac ggtcgcaggg cgaatgcgtg gcttgccacg cccgcaccaa
     3601 gctcaacaac gcgacccgca tgcagcccaa ttgtcttcgc ttacgcgatg agcttgacag
     3661 tgtgtcttgt tcggctagcg gtccggcttg acatcggtgc cgcccacgga cgggaagtct
     3721 ggcgggggcg gttaaaaggg aagccggcga acatccggca ctgtgcccgc aactgtgaat
     3781 gaccaggttc atgcctggtc ttagtcagga acctgccttt gtccgtcgtc cgcacccggt
     3841 cgggaccagc cgtggactgc gtggcaccgg gctgtaatga tcccggtacc tccgagacga
     3901 cagtttcgtg tcgtttttct ggaggccaat catgattgct tcattcctgc ttgccgctgc
     3961 cgatgtcgtg gtggcacccg ccgatcaatc gaacaccata gtcgtgactg catcccgggc
     4021 tccggagaaa gccaaggaca gcgctgcgag cgtcacggtc atcgacgacg aggcaattac
     4081 gcgccagggc gatcccctgg tctacgactt cctgcgtgaa attccgtcgg cggcggtttc
     4141 gtcgagcggc cccgcgggtt cggtcacgca agttcgtatt cgtggctcgg aagctaacca
     4201 caccttgctg ttcatcgatg gcatcgaagc caatgacctt tccggaagcg accagccgcg
     4261 cttcgagctg ctcaacgcgg acatcgcctc acggatcgaa gtggtgcgcg gtccgcagtc
     4321 ggcgctctgg gggtcgcaag cgatcggcgg tgtcatcaac atcgccggaa cggcggatcg
     4381 ttcaggctat ggcgccgctg cggaaggggg ttcctatggt ttcctgcgcg gctcggctgc
     4441 ggggtcgctc atctccggca acatgcaggt cgccggcgca ctcgggtggc agcgcgccac
     4501 tggtatcgat gaatccggta ccgggggcga tcgcgacggc taccataatc tttccggtcg
     4561 tgcgctcgcc tcctggacga tcgcaccgga tgttcggatt ggaatcaacg gcttctcgct
     4621 caacggctat tcccaatatg atgggacgga cccattcacg ttcgcaccga cgcagaaatt
     4681 atcaaccagg ttcggcatgt cggcaggtcg gttttggagc gcctttgggt caagcgacga
     4741 cgggctttcc ggctccgtgt cggcatcctt gttcgacgcg cgcaaccatt tcctgttcga
     4801 cggcgacgag acgaaccgca ccagcggggt gcggaagacg atctcgggcc agctccaata
     4861 tgcattcatc gctggagcga ttaaaaacca gcttgttgcc gccgccgatt atcaaaacga
     4921 gaatttcaaa tcgagcgaca cggtctatgg cggtctcagc gacgccaaca agcgccgcgt
     4981 caaccaggcg atcaccggcg aatggaaggc tgaggccggt acgatcgttg cggacgttgc
     5041 ggtccgccac gatttcttca acgagttcaa gggagcaacg acgcttcggg cgtcacttct
     5101 tggacatctc ggcggcggtt tttcggtcgc ggggtcctat ggcgagggca ttgctccgcc
     5161 gacgtttatc gagatgtacg gcttctttcc cggaacgttc atcggcaatc gcaatctcag
     5221 gccagaaact tcgcgcggct acgaagtttc ggtccggtac gccaagggcc ggtttgatgc
     5281 ggcagtcacc ggctatcgcc agcgacttca tgatgagatc gtcaacaatt cggacttcac
     5341 gagctcgatt aatgcgcccg gcaccagtta tcgctccggc gtcgagctgg aagccggctg
     5401 gcaccttgcc gaaaagctga gactaagcgc caattatgcc tacctccatg caacgcagcc
     5461 caatgacctt ggcgagcaag tggaggaaat ccggcgaccc aagcatagcg gcagcattgc
     5521 gctcgatgga tccagcaatc gcctgaccta tggcgcgtcc ctcgcctatg ttggagccca
     5581 ccgcgatacg gacttcgacc tgtttccatc taaagacgtt cagcttggct cctattggct
     5641 tgcgagcgca cgcctcgcct acgccatccg gccaggaatc gagcttttcg tgcgcggctc
     5701 caatctcctt aatcagcatt acgaggacgt gattggctat cgaacggaag gccgcggaat
     5761 ttacggcgga ttccgcctct cgcacttccg ctaagcgagt gcgcctcgta atcgcccggg
     5821 cttgaagcga ccgcgcaaga acaaagagcg agcgccggta gaagcgccta tgaagagtcc
     5881 caacagcgcg tcccgcgact gttggaaaat cgccccaaat ccagctattt gcagcgaaat
     5941 gagcgacgat gaacgggcga tccgagccgt ggtggatcag tggatggccg cgagcaaggc
     6001 gggcgacact gcaagcgtct taaatctcat gtgcgacgat gcgctgttcc tgacgatggg
     6061 acgtgaaccg ttcggcaaac gagagtttct cgacgcttct gaggcactca agcacatttc
     6121 gatcgacggg caagcatcga tcgaagagat ggaagtcatt ggcgatcgcg cctgggtccg
     6181 caatcatatc gagctcacga tcactcatcc ggaaaacgca ccggtctacc ggtccggcga
     6241 aaccctgacc atctttcgca aagggcaaga tggccgctgg cggcttttca gagacgccaa
     6301 tctcgtaagc tgactcgaga cttcggaggg gccggccatc gcgatccgcg gagcagtgct
     6361 ttcgaaccgc catttctctc gtcagcagaa cacggatgca attgcatcga tcttcgcccg
     6421 agcagccggg ctaacgtttt cgagcgcttc gagaaaacct ttgttgacca gcgccgagcc
     6481 gatgaatgtc catcgcatcg cctgatgctg ctgctcgacg agctgcaaag cctgttgcgc
     6541 gggcagttgc cggccaatga ccgcttcgag cgattgccga tcaagctccg cttgctgctt
     6601 gagtcctcca tcgacgaacg cgccaatctc gaggaactca tcgacggcat tttcaacttg
     6661 ctcagcgggg gcgctcatcg tgagctctcg gaacaccagc gcatcgagct tcacatgctg
     6721 ggattcctcg agccaatgat gtttgaacag gcttttgaac tgagggtcta gcgcttcatt
     6781 gtcacgaatg ctgtcaacat agtgacgctg cgtcccccat tcgattgcaa gcgtaaagat
     6841 ggcgagggca aggtcgctgt ggttgcgaat cgcggcgcca atttcttcag cagggccaat
     6901 gaaaccacat tggtggccaa agcaggccgc gaactcgtcg cgaaaccgga cgaaaagctc
     6961 gatgtgcttg tgctcctcac gcgcaaattg cgtgagcgct gcagagcgac aggaatcctg
     7021 tcccggatcg gacggaatct gtgcatcgag atagggcagg atgcagcgct cgacgagctc
     7081 gaacatcgac acgtagccga acgcgcgaat ctggttgagt ttgagctgct catcgggcgt
     7141 cagaaatgta acggcgctcg tccgcgcaaa gctttccggc agaaacggac gtgaaaaatc
     7201 aaagtgcctg tcaccgccga tgacgtcctc gaggcgccag ttcacgcgct tcgaagtctc
     7261 gagcaaggct tcataagaag gtgctgtcgt catgatcata ctcctggcag attcattggc
     7321 gcgccgtcgc gcacccgcga gcagcctttc gccgatcagt tgtttgccgt tgttgggtcg
     7381 atgatctggg gcacctcggt aatccgggtc actggtatcc cactcatctc gccatgggtt
     7441 cggatcgtct cttcgccgtc agcgaggtaa atgcagaaag tcctgtcgcc ggcgacgtaa
     7501 ctatgttgcc actgtatctt tggagagagt ttctccaatg cctggttcga agcgcgtgca
     7561 gccccgcaca attcgacgat cgacatcccg ccgatgccgg ggatctcgcg ctcgaccaga
     7621 tagcgcttga gttggctcat gacgccagct ccacttgtgt tgttcgaacg tcgctattgt
     7681 cgtcctggcg agagcgatag gcaaactaaa cgttctggtg ctgactaaag attttcctta
     7741 ctatgggacg tggtcgctcc agctcacctg aagtccctcc aggcgcttga aatggcaatt
     7801 cgcgtgggct cgctgaagcg tgccgcggaa ttgcttggaa tcacgcctgc cgcggttggc
     7861 cagcgggtaa agaccttgga ggcctacctc ggcgtaaact tgctcgagcg aggccggaca
     7921 gggatccgcg cttcacccga gctccggttg gcgatgcccc ggctcaagag cgcgttcgcc
     7981 gaccttgaag cggcggcagc cgagctcgac ctgcagcgcg cgcacgaaat ccatatcgcc
     8041 gccatttccg atttcgccga gctttggctg cgcccacgtc tcgaagcttt tcgcatgctg
     8101 catccgaaca tcctgttctc gatcaatggc gaaggcaccg cgccagcgcg ctttggcaaa
     8161 gtggattgcg agatcagttt ccgcgcgatt cccgagggcg acaaacatct gacactcttc
     8221 cgcgattttg tggttccgat tagctcgccg gtgaacttcg aacggaccgc atcattgcca
     8281 gcacgtacgc gcctcgaagg ctttcctctg ctgcacctcg acttctaccg caacgatccc
     8341 gtaggcctgt cctggcccga gtggttcagg cgcaacggca ttgagcggac agctccagaa
     8401 cgcggcattc ggttccagct gatcggggcg cttctcgacg ctgttgaagc aaatgccggc
     8461 atcagccttt gcgggcttgc cttgatcgcc gagcgcgttg acgcgggcag gatcaagctt
     8521 ccctacccga ttgcaacggg ctcacgaacc cggttcggtt tcgttgcaga attccgctcg
     8581 gacctttcgc gacgcccttt tgcactcttc cgcgattggc tcctcgacga agctcgaatg
     8641 acgagtgatt ggattgaaag agcgattcaa gcgcgcgata aatgacgtgg gtcgacccgg
     8701 ggcggatcgc gtaagtcgtg tcaggccgac cgacgtgggg ccaatctggt cagagcaggc
     8761 caacccacgt gaacaagatc aaatactcga ctacgtcact tgcattatgc ccgaccatcg
     8821 gtgccaagac gcttcccgac ttctccagcc aataggcata gagcaccccc aaagcgaaag
     8881 cgtagatctg ctgcccgagc gccagcggcc acgcacgtac gtcaaagttc gtcgcgtgca
     8941 ggagcgcgaa gattagcgcc acgaagacgc cggcccagtt catctcgaac cggccaaggc
     9001 gcaatcgacc gggcatggtt gctgcgagat aagtgaccag gaggctgcga aatggaattt
     9061 cctcagtggg tcccacatag gcgccctcga agaacagcca gccggcaaca ttcggtgacg
     9121 ttagcggata gccaatcttc ggcttggctg ccgcaagcag ttccggagca taatcgacga
     9181 gcgtcatcaa aatgccgaac gctgcgcccc aagcaatcgc tggccaaaga tatgtcttgc
     9241 cccgcgggag atgcaggcca aagtccacgt cgagaaaacg cttcatgatg aagatgacga
     9301 tgagcgccag cagcagttga aaaccgtgct gcatgtagag ccacggcagc gttgggccgt
     9361 gtggcgatgg cgtgtgccag accgtgctac aaagtgcagc ggctttcgcg gcgagaatgg
     9421 gcacgccaaa cgcgagcaga accgtcacca gcaacgggat cgccttcagt cggaatgaag
     9481 gcctggactc gtcgggaagt ttcatatgag ctgcgcctcg tcatgcgcag catcctcaat
     9541 atgcgcaagc gcagcgccaa acgccaatgc cactccatag gcgttggcgc acgattgtat
     9601 tcgctcgctt tggagggcgt ccgcgttgct tcacgcgtga cgcgcggaat cgattggttg
     9661 acgactggca atgaataggt gagcgtctct caagcgcgaa aggacaagca tgcgcgggcc
     9721 gttccgaacg atcatctttt cagcgttact gggtgtctcc ggcatcgcgc aagcggagtg
     9781 ctccgtctca tcggatcacg atgccggcgt ccggtcgctg aacccggcgg tcaagagcga
     9841 cgtcgatctc atcgtctcca tgaccatact gccaaagatg atgcatgttg attatcgcac
     9901 tgccgcgatg aagacgggtt gcaaccttgg tccgttcatc gctggtaacg tgacctacga
     9961 gttgtggggc gaggataacg gcgggcgcca gagaaaagcc gtcgccgcaa aagagggcgc
    10021 ccctgtcgcg ctggtactcc cggtcgtcga tttgatgaag gcgatcgaga accagcggca
    10081 aggaaggtcc gcgcaagtag aaggctacct gctggcgacg atcactaagg acgactttac
    10141 cgcttggcgt tattacacgg gaatgccgga tccggcgacc ttgaaggagg acatggcgag
    10201 cgtgctagcc ggcaatggga gtccgatttt ccgcgc
//
LOCUS       DASRBJ010000028         3513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_510909,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000028 DASRBJ010000000
VERSION     DASRBJ010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3513
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_510909"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..468
                     /locus_tag="VE968_00890"
     CDS             <1..468
                     /locus_tag="VE968_00890"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HZU50409.1"
                     /translation="YREHSATLRKRLRARLGSTEEANEVLHEAFTRLLGARPLDRVRE
                     PGAFLNRILRNLLVDRSRRHSVQPAHVAIDCARDCTVPPDQGQTIEYEQMRDRYRQLI
                     ASLPPRMRQVFVMHRLEGLSYNEIAERLGISVRTVEWHIAEAIVRVSRGLDIE"
     gene            465..1502
                     /locus_tag="VE968_00895"
     CDS             465..1502
                     /locus_tag="VE968_00895"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HZU50410.1"
                     /translation="MSERNARGKEGPLEEAAAWFARMRGPEAEASRAEFERWLARGAL
                     HRAAYNRAAEVFAMGKLLADDDELEEVSGATQKGRPSGLLFGALAAASLVVVASSLFV
                     LHESSISRNRSNITANGVSGAASVDVAAVNDRQVLRLSDNSMVRLDTGSMLAVQFGKA
                     ERKLSLQRGTARFYVAHEHRPFIVYAGGGYVVAHGTIFDVGVTNNHRVTVKLIQGVID
                     VATPQIVANGRRATQSRRLRAGETLSFEGVPSDVASPLPQRSSVTAASLQDEKGAREY
                     QSISLADLVDIANAGAATPIRIADVKSGELRVSGKFRVDDTNLLADRLAALFNLVIDR
                     TNPSEIVLRPK"
     gene            1664..3394
                     /locus_tag="VE968_00900"
     CDS             1664..3394
                     /locus_tag="VE968_00900"
                     /inference="COORDINATES: protein motif:HMM:NF023271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3363 domain-containing protein"
                     /protein_id="HZU50411.1"
                     /translation="MDDDFDPWLGGLRSRQSHAEKKYLHAVASVACRGRPRSNSTDHS
                     GFRFKGIGLGRGRAAVAAFSLEGRDFTFCCRRAHVGMKVVRLRGNAFRNALAHLHYIA
                     RDGVTRTGERGIVYGASEDRTNGRSFLERCAGDRHYFRITSCCEDGAEYEDLKPLTRR
                     FMSRVEDDLETRLEWIAVDHADTLYPHTHIVLRGKDDRGEDLVIVPDYMNHGMRNRLM
                     GIVSLDLGPPVGADVSRQLRLEIDAEKVTPLDRKLISLADGDGTLKVVTKEMAEYSAL
                     TGRLHKLRTLGLAELLPGSRWQLKNGVEDSLRAMRERREVATFMQRKLCVEGLQRSPA
                     EQVIHAPGSEIDLTGRLLVCGSDETSGRAYLLVDATDGRSHYLEIGKSLPLGLPKDAI
                     INVRELRDRPGRSLGTRVKLLSPLRLDLLGSYDGATWLDHELVSPSMVPRDVGFGREV
                     RHALAQRRTWLVEQGLATKVGEQVAYQRDMLSILERRSIVRTAATLKIETGLCFVPMH
                     EGDEIDGIVRRRIDFASSPYAMIANEHAFALVPWDSALENRLGKAVRASFTSSGISWT
                     IERGRQIAIP"
BASE COUNT          723 a         1001 c         1085 g          704 t
ORIGIN      
        1 tatcgcgagc attcggcgac gctccgaaaa cgactgcgcg cacgcctcgg ctcgaccgag
       61 gaagcgaacg aggtcttgca cgaagcgttc acgcggctcc ttggagcgcg gccgctcgac
      121 cgtgttcgtg agcccggcgc attcctcaac cggatcttac gcaatctcct ggttgaccgc
      181 tcgcgccggc attcggtcca gccggcgcat gtcgcgatcg actgtgcgcg tgattgcaca
      241 gttccgccag accagggcca aacaatcgaa tatgagcaaa tgcgcgatcg ctaccggcaa
      301 ttgattgcct cgcttccgcc gcgcatgcgc caggttttcg tgatgcatcg gctcgaaggt
      361 ctaagctaca atgagatcgc cgagcggctg ggtattagcg ttcgcacggt cgagtggcac
      421 atcgccgaag cgatagtccg ggtgagcagg gggctcgata tcgaatgagc gaaaggaacg
      481 cgcgggggaa ggaagggccg ctcgaggaag cggccgcgtg gttcgcgcgc atgcgaggtc
      541 ctgaagcgga agcgagccgt gcagaattcg aacgatggct ggcgcgtggg gcgctccacc
      601 gcgctgctta caacagggct gcagaagttt tcgcaatggg aaagcttctt gcggatgatg
      661 acgaactcga agaggtttct ggtgcgactc aaaaagggcg accgagcgga ctgctgtttg
      721 gtgcgttggc agcagcatcg ctggtcgttg tcgcctcaag cctgttcgtt cttcatgaaa
      781 gctccatttc ccgaaatcga tcgaacatca ctgcaaacgg tgtgagcggt gcggcgtccg
      841 tcgacgtcgc tgccgtgaac gaccgtcaag ttctccggct ctcggataat tcaatggtgc
      901 ggctcgacac gggatcgatg ctcgcggttc aatttggcaa ggctgagcgc aaattgtcgc
      961 tccaacgagg taccgcgcgc ttctacgtcg cgcatgagca tcggccgttc attgtctacg
     1021 cgggtggcgg ctatgtcgtc gcgcatggca ccattttcga cgtaggagtg acgaacaatc
     1081 accgcgtcac ggtgaagctg attcagggcg tgatcgacgt ggccacgccg cagattgtcg
     1141 caaacggtcg tcgggcgacc caaagccgac gattacgggc aggcgaaaca ctgagtttcg
     1201 agggtgtacc gtccgatgtt gcgtcgccgc tcccgcagag gtcgtcggtc actgccgcgt
     1261 ctctgcaaga cgagaagggc gcacgagaat atcagtcaat ctcgctggca gacctggtcg
     1321 acatcgcaaa tgcgggggcc gcgacaccca ttcgcattgc agacgtgaaa tcaggcgagc
     1381 tgcgagtctc aggcaagttc cgggtcgacg acacaaatct gcttgccgac cgacttgctg
     1441 ccttgttcaa tctcgtcatt gatcggacca acccgtctga gatcgtcctt cgcccaaagt
     1501 agaacaaatt gatggcgcga ggttgctcgc gcgcaattgc acgtcagtac tttcgtcgag
     1561 gaggtactgt cgggagagtg agcgccgcct agaatatgcg tgaccacgat caaggcgcag
     1621 cgcggtcgtc taacaaaacg aagagaggcc gcgatcatta tcaatggacg acgacttcga
     1681 tccgtggctt ggcggactgc gttcgaggca atcgcacgct gagaagaaat accttcatgc
     1741 agtagcatca gttgcgtgcc gtggtcgccc gagatcaaac agcaccgacc actcggggtt
     1801 tcgcttcaaa ggtatcggcc tcggccgcgg aagagccgcg gttgcggcat tctcactcga
     1861 aggccgagac ttcacgttct gttgtcgccg agcgcacgtt gggatgaagg tagtgcgcct
     1921 ccgcgggaac gcgtttcgga atgcacttgc gcaccttcat tatattgcac gcgatggcgt
     1981 cacgcgcacc ggcgaacgcg ggatcgtcta tggcgcgagc gaggatcgaa cgaatggtcg
     2041 gagtttcctc gaacgctgcg cgggcgaccg ccattacttt cgcattacga gctgttgcga
     2101 ggacggcgct gaatacgagg acctgaagcc gctgaccagg cgcttcatgt cgcgtgtcga
     2161 ggacgatctc gaaacgcgtc tcgagtggat tgcggttgat catgccgaca cgctttaccc
     2221 ccacacgcat atcgtacttc gcggtaaaga cgatcgcggt gaggacctgg tgatcgtgcc
     2281 ggactacatg aaccacggca tgcgaaaccg gcttatggga attgtctcgc tggacctcgg
     2341 tccaccggtc ggggcggacg tttctcgcca gttgcggctt gagatcgatg ccgaaaaggt
     2401 tacgccgctt gatcgcaagc taatcagctt ggccgacggc gatggtacac tcaaagtcgt
     2461 caccaaggaa atggctgagt attccgctct caccggtcga ttgcacaagt tgcgtactct
     2521 tggtcttgcc gaacttctcc ccggcagtcg ctggcaactg aaaaacggcg tcgaggacag
     2581 cctccgtgcc atgcgggaac gcagagaagt cgccaccttc atgcagcgca aattgtgcgt
     2641 cgagggactt cagcgctcac cggccgagca ggtcatccac gctcccggat cagagatcga
     2701 tcttaccgga aggctccttg tgtgcggatc ggacgagaca agcggacgag cttaccttct
     2761 tgtcgatgcg accgacgggc gcagccacta tctcgaaatc ggcaagagct tgccgcttgg
     2821 gctgccaaag gatgcaatca tcaatgtacg agaacttcgt gatcgtccgg gtcggtctct
     2881 aggcaccagg gtgaaactgc tctcgccgct ccggcttgac ctgcttggta gctatgatgg
     2941 agcaacttgg ctcgatcatg agcttgtctc gccatctatg gtcccgcgcg atgttggatt
     3001 tggacgcgaa gtccgtcatg cactggcgca gcgacgcacg tggctcgtcg aacaggggct
     3061 cgcgaccaag gttggcgaac aagtcgcgta ccagcgtgac atgctgtcga tcctcgagcg
     3121 acggtcaatc gttcggacag cggctacttt gaagatagag acgggccttt gcttcgtgcc
     3181 gatgcacgag ggcgacgaaa tcgacgggat cgtgcgtcgt cgcatcgatt tcgcgagctc
     3241 tccctatgca atgatcgcca acgagcatgc gttcgcgctc gtgccgtggg attccgcgct
     3301 ggaaaaccgc ctcggcaagg cggtgcgtgc ttcgtttact tcgagcggca tcagctggac
     3361 gatcgaacgc ggacggcaaa tcgcgattcc gtagcgaaat aaggtcgatc gggattgata
     3421 ccaccgaaac tcatcatcgc cgcactcccg gctagccgcg cgtgaacatc ggtgccggca
     3481 gtccgttcat cgaaaagcaa ttgccttgcg aac
//
LOCUS       DASRBJ010000029         2088 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_665470,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000029 DASRBJ010000000
VERSION     DASRBJ010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_665470"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..566)
                     /locus_tag="VE968_00905"
     CDS             complement(<1..566)
                     /locus_tag="VE968_00905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000150 - DNA strand exchange activity
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HZU50412.1"
                     /translation="MTKLHCAIYTRKSSEQGLEQEFNSLDAQYEACKAYLASQRHEGW
                     TLARERYDDGGISGGTMERAGLKALLADVAAGKVDVIVIYKIDRLTRSLADFARIVEL
                     LEKHGASFVSVTQSFNTKTSMGRLMLHVLLSFAQFEREVGAERVRDKIAASKAKGMWM
                     GGTVPLGYDTVDGKLVINAQEAATVRAI"
     gene            complement(563..982)
                     /locus_tag="VE968_00910"
     CDS             complement(563..982)
                     /locus_tag="VE968_00910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016747813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2924 domain-containing protein"
                     /protein_id="HZU50413.1"
                     /translation="MSSSVEAELVALPKLGRAKLQERWRDLFKTAPPVSYTPDLLARG
                     IAFRLQEKALGGLGPDARKLLGREDQATRRRQLSARVSLRPGNRLVRRWRGRTYVVEV
                     TDAGLVYDGERFGSLSVIARQITGARWSGPKFFGLVP"
     gene            complement(979..1353)
                     /locus_tag="VE968_00915"
     CDS             complement(979..1353)
                     /locus_tag="VE968_00915"
                     /inference="COORDINATES: protein motif:HMM:NF023420.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3489 domain-containing protein"
                     /protein_id="HZU50414.1"
                     /translation="MTQTSAKTIAPKTAKSKEQAGTVPPARPTKRQRKVAGPSSGSLP
                     RPQTAAGASTPKVAHRTTKQDQVAALLLRDEGATLDQMIAATGWLPHTTRAALTGLRK
                     KGYAIDSDKVDGVRTYRAVAPQ"
     gene            1760..>2088
                     /locus_tag="VE968_00920"
     CDS             1760..>2088
                     /locus_tag="VE968_00920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50415.1"
                     /translation="MKNMILGATGALAIACAYAPVAAEPYVDYTPQKGYWTINAVEVD
                     PNHVDDYLTGLRSSQVSAFEVLKRRGLIDDYKFMVRTGYVKGSPNVLIMTHVPSTALD
                     DPDQARD"
BASE COUNT          370 a          662 c          625 g          431 t
ORIGIN      
        1 aagatggctc gcaccgtggc tgcctcttgg gcgttgatca cgagcttgcc gtcgaccgta
       61 tcatatccga gcggcactgt tccgcccatc cacattccct tggccttcga cgcggcgatc
      121 ttgtcgcgga cccgctcggc gccgacctct cgctcgaact gcgcgaatga cagcaacacg
      181 tgcaacatca gcctgcccat gctcgtctta gtgttgaacg actgggtaac gctgacgaag
      241 ctcgcgccat gcttctccag cagttcgacg atgcgggcaa agtcggcgag gcttcgggtc
      301 aggcgatcga tcttgtagat gacgatgaca tcgaccttgc ccgccgcaac gtcggcgagc
      361 agcgccttga ggcctgcccg ttccatcgtt ccgcccgaga tgccgccgtc atcgtaccgc
      421 tcgcgcgcca aggtccagcc ttcgtggcgc tggctggcga gatacgcctt gcacgcctca
      481 tattgtgcat cgaggctgtt gaattcctgc tcaagccctt gctcgctcga cttgcgggtg
      541 tagatggcgc agtgcagctt ggtcatggta ccaacccgaa aaacttgggt cctgaccagc
      601 gggcgccggt gatctgcctc gcgatcaccg atagtgatcc gaatcgctcg ccgtcataaa
      661 cgagcccggc gtcggtcacc tccacgacat aagttcggcc gcgccagcga cggaccaggc
      721 gattcccggg gcgaagcgac acgcgtgccg acagttgcct gcggcgagta gcttgatcct
      781 cacggccaag cagctttcgc gcatccggac ccagaccacc tagcgctttc tcctgcaatc
      841 ggaacgcgat gccgcgcgcg agcaggtcgg gcgtgtaaga gaccggtggc gcggtcttga
      901 acaggtcgcg ccatcgctcc tgcaactttg ccctgccgag tttcggcagg gcaacaagtt
      961 cagcttcgac cgaagagctc attggggtgc aaccgctcga taggtgcgca ctccgtcgac
     1021 tttgtcacta tcgatggcgt agcccttttt gcgcaagccg gtgagcgccg cccgtgtcgt
     1081 gtgcggcagc cagcccgttg cggcgatcat ctgatcgagc gtcgcaccct cgtcgcgcag
     1141 gagcagcgca gcgacttgat cctgtttggt ggtacggtgt gcgaccttcg gagtgcttgc
     1201 accagccgcg gtctgcggcc gaggtagtga accgctcgac gggcctgcta ccttgcgctg
     1261 ccgcttcgtt gggcgtgccg gcggaacagt gccagcttgc tccttcgatt tggcggtttt
     1321 gggtgcgatg gtctttgccg atgtctgggt catgtgagtg tctccaatca aggagcggca
     1381 acatgccgct cccaccactc acagccccgc cggcgcgccg gtcggggcag tcgcgcagct
     1441 aagcacgccg cgactcacaa aaagaccaat gctccgttcg gaagcgaagt cgaatggaat
     1501 gtaatcggaa cggccgcaaa gcacccttct cgctcattga cgaccggctc tagcgtgtcc
     1561 gtaagcggac cttcgttcag ccggcgctag agtccgtttt cgacccaacc tggcgatagc
     1621 accttagctg gctgaacggg gttatcttag ccgagatttt cgcccagtca gctgatgcgc
     1681 gtttacattt cattaggcgc gactccgtgg cccgtgcttt ggtcggtgcc gccgaattac
     1741 cggcttgagg gggtatttca tgaagaacat gattctgggt gccacgggcg ccctcgcaat
     1801 cgcctgcgcg tatgctccag ttgctgccga gccgtacgtc gattacacac cgcagaaggg
     1861 ctactggacg attaacgccg tcgaggtcga tccgaatcac gtcgatgatt acctgaccgg
     1921 cctgcgcagc tcgcaggtca gcgcattcga ggtgctcaaa cggcgcggcc tcatcgacga
     1981 ttacaagttc atggtgcgca ccggttacgt gaaaggctcg cccaacgtcc tgatcatgac
     2041 gcatgtgcct agcactgctt tggacgatcc tgatcaagcg cgcgacca
//
LOCUS       DASRBJ010000030         6070 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_209689,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000030 DASRBJ010000000
VERSION     DASRBJ010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6070
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209689"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1826)
                     /gene="mrdA"
                     /locus_tag="VE968_00925"
     CDS             complement(<1..1826)
                     /gene="mrdA"
                     /locus_tag="VE968_00925"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR03423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HZU50416.1"
                     /translation="MRITTAHQSITFSRRMVLLGGAQVAVGGLLVGRMGWLAIAQNEK
                     YQLLSESNRVQLIPVPPRRGWIIDRYGKPIAINKASFRVDLIPQQIVNGSQIIEKLQQ
                     LLSLLPDDVERITRELAASRGFQPVSVADNIPYEQYAAITVRLPELPGVAASRGFTRF
                     YPGGSTVGQLVGYVGPASTTEYEKENKNPLLLIPGVKIGKSGLEKTLEPVLRGEPGGQ
                     RVEVTAKGKLVKELDPKPDISGKTVQLTIDSDLHQYAARRIGDQSCCIVVLDVTNGDI
                     LAMPSMPSFDPNDFSDGISKNEYKMLSQDDHLPLVDKALESLYPSGSTIKPSMAMALL
                     NAGIDRKQKVNCTGAFQLGNHTFHCDKRHGPLDMDGAVVNSCDVYFYTMCLRVGAEKL
                     APMVRSMGFGEKFDLPFENQRYGTIPDPDWIMRKYHRKWQGYDTVNMSIGQGMVLINP
                     LQLATMASRLATGKRVVPRLLKNKPAVPQTQLAVDQDHLDFIRTAMAGVVDHGTAAAA
                     KFPIPGIQMAGKTGTAQTHNLSASERGNYTAANWKLRDHSLFMGFVPFDNPRYAAGAI
                     VEHGGFGASVAAPLVRDTLLFLYDRQKALAALQAFEQSLGGTL"
     gene            complement(1832..2299)
                     /gene="mreD"
                     /locus_tag="VE968_00930"
     CDS             complement(1832..2299)
                     /gene="mreD"
                     /locus_tag="VE968_00930"
                     /inference="COORDINATES: protein motif:HMM:TIGR03426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HZU50417.1"
                     /translation="MAAWVPAATVVAASLLAALPIVSTTGWYPDFGYLVFISWRLLRA
                     DPWPAWWAAPLGFVNDLFTGYPVGFSIALWSATMLALDLIDRRTMWRDYWVEWILAAV
                     LIAIDEWLQWRVARVLGGAPPLVRMLPSIAISIFLFPVIAWIVSRTDAWRLGR"
     gene            complement(2353..3234)
                     /gene="mreC"
                     /locus_tag="VE968_00935"
     CDS             complement(2353..3234)
                     /gene="mreC"
                     /locus_tag="VE968_00935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005618 - cell wall [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HZU50418.1"
                     /translation="MATARPGWSRRAQYGLFFSFLAVIAGIIVGLVMLGLSLVAPSTF
                     QTVRGAALDVTGPVAGALHEVIDTAEGIITGADDYWDAATQNAELKRENKAMLQRMVE
                     AKGIFQENRQLKATLQLREHERATIATGRIVGSSFNSPRRFAIISAGTSDGVRIGMPV
                     RSADGLVGRIIDAGALASRVLLVSDRANIVPARLLRNGIPVIAQGRGDGTIDVRPLEV
                     GRNPFKPGDIIITSGTGGLYPPLVPVGRVVKLDDDGAVALPLADPANTSFAVVEPPFE
                     PAAIAAANAPAAPPGRR"
     gene            complement(3249..4292)
                     /locus_tag="VE968_00940"
     CDS             complement(3249..4292)
                     /locus_tag="VE968_00940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HZU50419.1"
                     /translation="MFWNRWFKWMSHDMAIDLGTANTLVYVRGRGIVLNEPSVVAIET
                     INGVKKVKAVGDDAKLMMGKTPDQIEAIRPLRDGVIADIDVAEQMIKHFIHKVHGGKM
                     RAWRFPEIVICVPSGSTSVERRAIRDAASNAGASAVYLIEEPMAAAIGADMPVTQPIG
                     SMVVDIGGGTTEVAVLSLRGLAYTTSVRVGGDKMDEAISSYVRRNHNLLIGEATAERI
                     KKEVGIAKPPVDGIGKTVHIKGRDLVNGVPKEISINQGQIAEALSEPVGTIVEGVRIA
                     LENTAPELAADICDQGIVLTGGGALLQGLDEVLRDETGLPVTVADDPLTCVALGTGRA
                     LEEEQFRGVLQTA"
     gene            4444..>6070
                     /gene="mutL"
                     /locus_tag="VE968_00945"
     CDS             4444..>6070
                     /gene="mutL"
                     /locus_tag="VE968_00945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0032300 - mismatch repair complex
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HZU50420.1"
                     /translation="MSIRRLPPALINRIAAGEVVERPASALKELVENSLDAGATNVAV
                     RLGGGGLELIEVADNGCGMTPDEMHLALERHATSKLPTDEIECVRSFGFRGEALPSIA
                     SVSRLTLESRVRGNDGWRITIDHGEPLAEAPAALPPGTRIRIELLFEKVPARRKFLRS
                     ARAEYAACLDSLKRLAMARSDVAFTLEHDGRRVLSLQPADPPTRVAELLTHELDRHGI
                     GIDFVRDAVRLTGVVSIPTFNRGAADQQYLFVNSRPVKDRLLVGALRAAYRDLVARDR
                     HPIAALFLDVPLEDVDVNVHPAKTEVRFRDPAAIRGIIVGGLRHALEAESQRSAAREQ
                     AASPAMWTTSTSSYSVPHGQSDNGRGEDFGARSSPAHVQHNEPLRLFDAAPAARAEAA
                     IDPPGKFPLGVARGQVAATYIVAEAEDGLVIVDQHAAHERLVLERMRAARDGSAVARQ
                     ELLIPAVVELDEPDCDRLESAASELGEMGLELERFGPTSVLVRAVPAALGTTNAADLV
                     ADLAAEIAELGGPVMLRDKLDHVAATIACHGSVR"
BASE COUNT         1190 a         1890 c         1811 g         1179 t
ORIGIN      
        1 agcgtaccgc cgaggctctg ctcgaaagcc tgaagcgcag ccagcgcctt ctgccgatcg
       61 tagaggaaca gcaaggtatc gcgtaccagc ggcgctgcga ccgacgcgcc gaacccacca
      121 tgttcgacaa tggcgcccgc agcgtaccgc gggttgtcga atggcacgaa gcccatgaac
      181 agcgagtggt cgcgaagttt ccaattcgcg gccgtatagt tgccgcgttc cgaagcactc
      241 agattgtgag tctgggcggt gccggtcttg cccgccattt gaatgcccgg aattggaaac
      301 ttggcggccg ccgcggtgcc gtgatcgacc actccggcca tcgccgtgcg gatgaaatcg
      361 aggtgatctt gatcgaccgc gagctgcgtc tgtggcacgg cgggcttatt cttcagcagg
      421 cgtggcacca ccctctttcc ggtcgcgagc cggctcgcca tggtcgcgag ctggagcgga
      481 ttgatcagca ccatgccctg cccgattgac atgttgacgg tgtcgtatcc ctgccacttg
      541 cggtgatatt tgcgcatgat ccagtcaggg tcggggatcg tgccatagcg ctggttttca
      601 aacggcaggt cgaacttctc gccgaatccc atcgagcgga ccattggcgc gagcttctcg
      661 gcaccgacgc gcaggcacat cgtgtagaag taaacgtcgc aactgtttac taccgcgcca
      721 tccatatcga gcggcccatg acgcttgtcg cagtggaaag tgtgatttcc gagttgaaac
      781 gcgccggtgc aattgacctt ctgctttcgg tcaatcccgg cgttgaggag ggccatcgcc
      841 atcgacggct tgatcgtcga tcccgatggg tagaggctct ccagcgcctt gtcgacgagc
      901 ggcaaatggt cgtcctggga cagcattttg tattcgttct tgctgatccc gtcagaaaaa
      961 tcgttcggat caaatgaggg catcgacggc atcgccaaga tgtcgccgtt ggtcacgtcg
     1021 agcaccacga tgcaacatga ttggtcgccg atccgacgag ccgcatattg gtgaagatca
     1081 gagtcgatgg ttagctggac ggtcttgcca ctgatatccg gtttcggatc gagttcctta
     1141 acgagcttgc ccttggcggt gacttcaaca cgctggcctc ccggctcgcc gcggagcacc
     1201 ggctcgagcg tcttttcaag gcctgacttc ccgatcttaa ctcccgggat cagcaggagc
     1261 gggttcttgt tctctttctc atattccgtc gtcgacgccg ggcccacata accgaccagc
     1321 tgtccgacgg tggatccacc agggtagaaa cgggtaaagc cgcgcgaggc cgcaacgccc
     1381 ggaagctcgg gcagcctcac cgtgattgcg gcatattgtt cgtaaggaat attgtcagcc
     1441 actgacactg gctggaagcc acgcgaagcg gcgagttcgc gtgtgatccg ttctacatcg
     1501 tccggaagaa gcgacagcag ctgctgcagc ttctcgatta tctgcgaccc gttgacgatc
     1561 tgctgcggaa taaggtcgac gcgaaaactc gccttgttga tggcgatcgg cttgccgtat
     1621 cggtcgatga tccacccccg gcgcggcgga actggaatga gctgaacccg attgctttcg
     1681 gacagaagct ggtatttctc gttctgcgca atcgcgagcc accccatgcg accgaccagg
     1741 agaccgccca ccgcaacctg ggcgccgccg agaagcacca ttcgacgaga aaaagtgatc
     1801 gactggtgcg cagtcgtgat gcgcatgtgc ttcaccggcc gagcctccac gcatcagtcc
     1861 gtgagacgat ccatgcaatc accgggaaaa gaaaaatcga gatcgcgatc gaaggcagca
     1921 tgcgcacaag tggcggcgca cctccaagca ccctggcgac gcgccactgc agccattcat
     1981 cgattgcgat aagcactgct gccaagatcc attcgaccca gtaatcgcgc cacatcgtgc
     2041 gccggtcgat cagatcgagg gcaagcatgg tcgcactcca caaagctatt gaaaagccta
     2101 caggataacc ggtgaacagg tcgttgacga aaccaagcgg agcagcccac cacgctggcc
     2161 atgggtctgc tctcaaaagt ctccagctga tgaaaacgag atagccaaaa tccggatacc
     2221 agcccgttgt cgagacgatt ggcagcgccg ccagcagcga agcggcaacg accgtcgccg
     2281 cgggaaccca tgcggccatg cgcgacggac cctgtccgat ccttcgcggc gggctgagcg
     2341 cggcacgaac catcaacgcc ttcccggcgg agctgcgggc gcatttgcgg cggcgatcgc
     2401 ggccggctcg aacggtggct cgacgaccgc aaaactcgtg tttgcgggat cggcaagagg
     2461 caaggcaacg gcgccgtcgt catcgagctt cacgacgcgt ccgactggaa cgagtggggg
     2521 gtatagacca ccggttccgg acgtaatgat gatgtcgccc ggcttgaatg gattgcgtcc
     2581 gacttcaagc ggacgaacat cgatagtgcc gtcgccgcgt ccttgggcaa tcaccggaat
     2641 tccattgcga agaagccgag cgggcacgat gttcgcgcgg tcggacacga ggagcacgcg
     2701 cgacgcgagt gctcccgcat cgatgatccg accaacgaga ccgtccgccg agcgcacggg
     2761 catgccaatt cgcacgccgt cgctggttcc cgctgaaatg atcgcaaaac gccgcgggct
     2821 gttgaacgac gagccaacga tccggccagt ggcaatggtc gctcgctcgt gctcgcgaag
     2881 ctggagggtt gccttgagct ggcggttttc ctggaagatg cctttggctt caaccatccg
     2941 ctgcaacatt gccttgttct cgcgcttgag ctcagcattc tgggttgcag cgtcccagta
     3001 atcgtcggcg ccagtgatta ttccttcggc agtgtcgatg acttcgtgca gcgcgccggc
     3061 gacgggtcca gtcacgtcaa gtgctgcacc gcgcaccgtt tggaatgtgc tcggtgccac
     3121 aagcgacaac ccaagcatca ccagaccgac gatgatccct gcaattacag cgagaaagct
     3181 gaaaaagagc ccatactggg ctcgacgcga ccagccggga cgcgcggtcg ccaccgctca
     3241 gctccgcttt atgcggtctg gagcacgccg cggaactgct cttcctcgag cgcacggcca
     3301 gtgccgagcg caacgcaggt gagcgggtcg tcggcgacgg tgacgggaag gccggtctcg
     3361 tcgcgaagaa cctcgtccag cccttggagc agcgcgccgc caccggtgag aacaatgccc
     3421 tggtcgcaaa tgtcggcggc gagctcaggt gccgtattct cgagtgctat tcggacgccc
     3481 tcgacgatcg ttccgaccgg ctctgagagg gcttcagcga tctgcccctg attaatcgaa
     3541 atctccttcg gcacgccatt gacgaggtcg cgacccttga tgtgcaccgt cttgccgata
     3601 ccgtcgacgg gtggctttgc gataccaact tccttcttga tccgctccgc cgtcgcttcg
     3661 ccaatcagga ggttgtgatt gcgacgaacg taggaactga tcgcttcgtc catcttgtcg
     3721 ccgccgactc gcaccgaggt cgtgtaggca agacctcgca gcgacaggac agccacttcg
     3781 gtcgtcccgc cgccaatgtc gacgaccatc gacccgatcg gctgtgtcac gggcatatcc
     3841 gcaccgatcg cggcggccat gggctcctcg atcaggtaaa cagcgcttgc gccggcattg
     3901 gacgccgcat cgcgaatcgc gcgccgctcg acggatgtcg aacccgacgg cacgcagatg
     3961 acgatctcgg ggaagcgcca tgcgcgcatt tttccgccgt gaaccttatg gatgaagtgc
     4021 ttgatcatct gttcggcaac gtcgatgtcg gcaatgacgc cgtcgcgaag cggacggatc
     4081 gcctcgatct ggtccggtgt cttgcccatc atgagcttgg cgtcgtcacc gaccgctttc
     4141 accttcttca cgccgttgat ggtctcgatt gcgaccaccg aaggttcatt gagcacgatc
     4201 ccccggccgc ggacatagac aagcgtgttg gcggttccga gatcgatcgc catgtcgtgc
     4261 gacatccatt tgaaccaacg attccagaac attaatcccc gccctctcgc ttgtgctcgc
     4321 ccaacagcag taatgatcct gccgcttaat tttcagttct tcacaacccg ttgaatgcag
     4381 tctgaatttt cgagaaaaat cagtgcttcg ccgacacttg ggaattggga taagaccctt
     4441 aacatgtcaa taagaaggct gcctccggcg cttatcaatc gcatcgccgc gggcgaggtt
     4501 gtcgagagac cagcaagcgc gctcaaggaa ctggttgaaa attcactcga cgcgggggca
     4561 acgaatgtgg ccgtgcgcct cggcggcggc ggcctcgaac taatcgaagt tgccgacaat
     4621 gggtgcggca tgactccgga cgagatgcac ctcgcgctcg agcgtcatgc aacgtcgaaa
     4681 ctgccgaccg acgaaatcga atgcgtcagg agcttcggat ttcgcggcga agcgctcccg
     4741 tcgatcgcca gtgtctcgcg tttaaccctc gagagtcgcg tgcgcggtaa tgatggttgg
     4801 cgaatcacga tcgatcacgg tgaacccttg gcagaagcac ccgctgcact tccgccagga
     4861 acacgaatcc gcatcgagct gctgttcgaa aaagtgcctg cccgtcgcaa gttcctgcgc
     4921 tcagcgcggg ccgaatatgc cgcttgcctc gacagcctga agcgccttgc aatggcgcgc
     4981 agcgacgtcg ccttcacgct cgagcatgac ggccgacgcg tgctcagcct ccagcccgcg
     5041 gatcctccga cccgggttgc tgagcttctg acccacgaac tcgatcgtca tggaatcggg
     5101 atcgacttcg tgcgcgacgc ggttcggctt accggagtcg ttagtattcc gaccttcaat
     5161 cggggcgccg ccgatcagca atatcttttc gtgaattccc ggccggtgaa ggaccgtctc
     5221 ctggtgggtg cgctgcgcgc cgcctatcgc gatctcgtcg ctcgtgaccg ccacccgatc
     5281 gccgccttgt tcctcgacgt tcctctcgag gatgtcgatg tcaacgtcca ccccgccaag
     5341 accgaggtgc ggtttcggga ccctgccgca atacgaggaa taatcgtcgg cggccttcgc
     5401 catgcgcttg aagcggaaag ccagcggagc gccgcccgcg agcaggctgc ttcgcccgcc
     5461 atgtggacga caagcacgag ctcctattcc gttccgcacg gacaatcgga caatggccga
     5521 ggcgaggatt tcggggctag aagctcgccg gcccacgttc agcacaacga gcctcttcgg
     5581 ctcttcgatg ctgcgcctgc cgcgagagcc gaggccgcga tcgatccgcc aggcaaattt
     5641 ccccttggtg ttgctcgcgg ccaagttgcc gcgacataca ttgttgccga agctgaagat
     5701 gggctcgtca ttgtcgacca gcatgcggcg cacgagcgcc ttgttctcga aagaatgcgc
     5761 gcagcgcgcg atggaagcgc cgtcgcgcgg caggaacttc tcattccggc agtcgtcgaa
     5821 ctcgacgagc ccgactgtga tcggctcgaa tcggctgcca gcgagcttgg agaaatgggg
     5881 cttgagctcg agcggttcgg gccaacctca gtcctcgtca gggcggtccc tgcggcgctc
     5941 ggtaccacca acgccgctga cctcgttgcc gatcttgctg ccgagatcgc cgaacttgga
     6001 ggtccggtca tgcttcgcga caagcttgac catgttgcgg caacgatagc ctgtcacggt
     6061 tcggtccgcg
//
LOCUS       DASRBJ010000031         2815 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_612650,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000031 DASRBJ010000000
VERSION     DASRBJ010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2815
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_612650"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..280)
                     /gene="rplJ"
                     /locus_tag="VE968_00950"
     CDS             complement(<1..280)
                     /gene="rplJ"
                     /locus_tag="VE968_00950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011415799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HZU50421.1"
                     /translation="MDRSQKADLVAELKQVFSETSVVVVTRNLGLTVAQSTDLRLRMR
                     DAGAQFKVAKNRLALIALEDTRYKPIGDFLRGPTALATSPDPVAAAKVA"
     gene            complement(679..1581)
                     /locus_tag="VE968_00955"
     CDS             complement(679..1581)
                     /locus_tag="VE968_00955"
                     /inference="COORDINATES: protein motif:HMM:NF013759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P44/Msp2 family outer membrane protein"
                     /protein_id="HZU50422.1"
                     /translation="MRKYLLAAVAAAALATPAYARDGSPYVGLEGGILFPETKDINGS
                     VSFANPSYTQIGAAPIGREHFKKGYDLDVLGGFDLGMFRIEGELGYKKSKVKNFNLTT
                     QYVEGINTAAGTQFSGNDLGWTRNVTVYDAMLNGMIDLGDSSGWSGFAGGGIGYAHFK
                     ELGQSDSQGAWQAFAGFRFPVSDNVDVGLKYRYFRSLGRLKFNDTAVFNAVGTGTSGG
                     TAFINTSQHFSSHSLLLSLVYNFAAAAPPPPPPPPPPPPPPPPPATQTCPDGSVIPAT
                     STCPAPPPPPPPPPPPAQRGERGE"
     gene            complement(1789..2484)
                     /gene="rplA"
                     /locus_tag="VE968_00960"
     CDS             complement(1789..2484)
                     /gene="rplA"
                     /locus_tag="VE968_00960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HZU50423.1"
                     /translation="MAKLTKKQKAFAAVDREKFYGIDEALGLVKKNATAKFDETVEVA
                     LNLGVDPRHADQMVRGVVNLPKGTGKTVRVAVFAKGAKADEARTAGADVVGAEDLMET
                     IQGGQIDFDRVIATPDMMGIVGRLGKVLGPKGLMPNPKLGTVTMDVSKAVNDAKSGQV
                     EFRVEKAGIVHAGIGKASFSEADLKENFTAFIDAIIRGKPSGAKGKFVKKLSVSSTMG
                     PGVKVDLSEVAGA"
     gene            complement(2489..>2815)
                     /gene="rplK"
                     /locus_tag="VE968_00965"
     CDS             complement(2489..>2815)
                     /gene="rplK"
                     /locus_tag="VE968_00965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011240610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HZU50424.1"
                     /translation="MEFCKAFNASTQELEKGAPIPTVITVYADRSFSFVTKTPPASFL
                     LKKAAKIQKGSSETGKSTAGTIKRSQLRDIAETKMKDLNANDLDAATKIIEGSARAMG
                     LNVVEG"
BASE COUNT          526 a          863 c          848 g          578 t
ORIGIN      
        1 cagccacttt ggccgccgcc accggatcgg gcgatgtcgc aagggcggtc gggcccctga
       61 ggaaatcgcc gatcggcttg taccgcgtgt cctcgagtgc aatcagggca agtcggttct
      121 tcgcaacttt gaactgggca ccggcatccc gcatacgcag gcgcaggtcc gtggattgcg
      181 ccacggtcag tccgagattg cgtgtgacaa ccacaacgct ggtctcggag aagacctgct
      241 tcagctcggc gaccagatcg gccttttgcg atcgatccat gccaactcca aactatcgct
      301 cgaaaccgtg acctcgagcg agcttcaaca tatgcccggg caaatcggcc caagcgctca
      361 aagtccgttg ggggcaatga tcggcacgct gcatcagcaa cgcacgacgg agcgcacgag
      421 cggcgatccg aattgattcc tgtccccgtc ttggctgcag attaagccgt tcgcttgcgc
      481 gagaaggcgg cagctgtctc ggacggttgc accgggcgag ccggtgcgag cgcgcgccta
      541 taacgaattg cgctgtgaga tcaagccagt ggatgagctt tgcgcaaggc gcgcgagcgt
      601 ttcaagcgat cagactcaaa gaaaaggccc ggacgacaca agtgtcctcc gggccagtcc
      661 ccttttgaac gcgtgattct attcgccgcg ctcgccgcgt tgtgctggcg gcggcggcgg
      721 cggcggcggc ggcggtggcg ccgggcaggt gctcgttgcc ggaattaccg atccatccgg
      781 gcacgtctgc gtcgcgggtg gcggcggcgg cggtggcggc ggcggcggag gcggtggggg
      841 cggcggcgct gctgcggcga agttatagac aaggctcaag agcaggctgt gcgagctgaa
      901 gtgctggctc gtgttgatga atgccgtgcc tccggacgtt ccggtgccaa ctgcattgaa
      961 gacggccgta tcattgaact tgaggcggcc aaggcttcgg aagtagcgat atttcagccc
     1021 gacatcgaca ttatcgctga cggggaaacg gaagccggcg aatgcctgcc atgcgccttg
     1081 gctgtcgctt tggccaagtt ccttgaagtg cgcatagccg ataccgccgc ccgcaaaacc
     1141 gctccatccc gagctgtcgc cgaggtcgat catgccgttc agcatcgcat cgtaaacagt
     1201 gacattgcgg gtccagccga gatcgttccc gctgaactgc gttcctgccg ccgtgttgat
     1261 accctcgaca tattgtgtcg tcaggttgaa gttcttgacc ttcgacttct tgtagccaag
     1321 ctcaccttca atccggaaca tgccgagatc gaagccgccg agcacatcga ggtcatagcc
     1381 cttcttgaaa tgctcgcgtc caatgggagc ggcaccaatc tgcgtatagc ttgggtttgc
     1441 gaacgagacg ctgccattga tgtccttcgt ctcggggaag agaattccgc cctcaagacc
     1501 gacataggga ctgccgtccc ttgcataggc gggtgtcgcc agggctgccg ctgcgactgc
     1561 ggcgagcaga tatttgcgca tgtgtaccaa acccctttct ggtttctcgc ggcgccaaca
     1621 ttagacatgc tcactgggtt gcaccagagg agcacatgaa gtgaataggc gcagaactgt
     1681 ggcggcaaag ccacagtctt gcccgccggc cagagggaat gcgcccaaaa agaaaggccg
     1741 gaccggagcc cgacccttcc gaaagttaat gatcagtccg gcgcgcgttc aggcgccagc
     1801 gacttcgctg aggtcgacct tcacgcccgg gcccattgtc gaggaaacac tgagcttctt
     1861 cacgaacttg cccttggcac ctgatggctt cccacggatg atcgcatcga tgaatgccgt
     1921 gaaattctcc ttgaggtccg cctcggagaa actcgccttg ccgatgccgg cgtgaacgat
     1981 tccggccttt tcgacgcgga actcgacctg ccccgacttg gcgtcattca cggccttcga
     2041 aacgtccatc gtgaccgttc caagcttcgg gtttggcatc aggcccttgg gcccgagaac
     2101 cttaccgagc cgaccgacga tccccatcat gtcgggggtc gcgatgactc ggtcaaagtc
     2161 gatctggccg ccttggatgg tttccatgag gtcttcggct ccaacgacat ccgcaccggc
     2221 ggtccgcgct tcatccgcct tggcgccctt ggcgaacacg gcgacacgca ccgtcttgcc
     2281 agtgcccttg gggaggttca cgacgccacg aaccatctgg tcggcgtgcc tcggatcgac
     2341 gccaaggttt agcgcaacct cgacggtctc atcgaacttc gccgtcgcgt tcttctttac
     2401 gaggccaagc gcctcgtcga tgccatagaa tttctcgcga tcgacggcag cgaacgcctt
     2461 ctgcttcttg gtgagctttg ccattggttc agccctccac cacgttgagg cccattgctc
     2521 gggcgctgcc ttcaatgatc ttggttgcgg catcgagatc gttcgcgttg agatccttca
     2581 tcttggtctc cgcgatgtca cgcagctgcg accgcttgat cgtcccagcg gtcgacttcc
     2641 cggtctcgct cgaccccttc tggatcttag ccgccttctt gagcaggaac gaagcgggag
     2701 gagtctttgt aacgaaggag aagctacgat ccgcgtagac ggtgatcacc gtcggaatcg
     2761 gagcgccctt ttcgagttcc tgcgtcgaag cgttgaacgc cttgcagaac tccat
//
LOCUS       DASRBJ010000032         2424 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_665954,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000032 DASRBJ010000000
VERSION     DASRBJ010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2424)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2424)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2424
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_665954"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..413)
                     /locus_tag="VE968_00970"
     CDS             complement(<1..413)
                     /locus_tag="VE968_00970"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HZU50425.1"
                     /translation="MAANFDPDQFARQLAREAPDAIIYADADGRIQFWNRGAERIFGF
                     QENEAVGQTLDIIIPEHLRKRHWEGFMGTIRTGRTRYGAGDVLEVPALRKDGSQATVA
                     FSMLPFRDSDGSVLGIAAILRDVTQRFEEMKRLGER"
     gene            complement(1011..>2424)
                     /locus_tag="VE968_00975"
     CDS             complement(1011..>2424)
                     /locus_tag="VE968_00975"
                     /EC_number="7.2.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012892.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015662 - P-type ion transporter activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0019829 - ATPase-coupled monoatomic cation
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0043169 - cation binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HZU50426.1"
                     /translation="RFLAGTEHVHRSWSLVGEYPLSRRMLATSRVWSAQGAAGERVIA
                     AKGAPEAISDLCHLSADTATAVTGAVEVLASQGLRVLGVARALYPGASLPSSQHDFDF
                     QFVGLVALEDPVRPGVPQAIKEAYSAGIRTIIITGDYPSTAVSVAHAIGLANAERYIT
                     GAQLDDMSDDELSKHVEGCNIFCRVAPEQKLRIVQALKRDGEIVAMTGDGVNDAPALK
                     AAHVGIAMGSRGTDVAREAAALVLLNDDFGSMLEAVKEGRRIFDNLRKAITFVTAAHV
                     PIVGMSIIPVLFGMPLLLLPIHILFLQLIIDPACSIAFEAEPAEADVMKRPPRNPKSR
                     LFDRATILPATVQGFIILVVVVSVFTLALGRGRDEAVARATAFTTMVLCSLALLFVNR
                     LSERRTASPNRVMSALASGTIIVLALGVSIPALRSLFRFGAMSAVDISVVLAAAALCF
                     AGLVLARILLAGMHSAKSRA"
BASE COUNT          511 a          723 c          736 g          454 t
ORIGIN      
        1 cgctcgccca gtcttttcat ttcctcaaac ctttgcgtga catcgcggag tatcgcagcg
       61 atacccaaca cgctgccgtc gctgtcgcgg aaaggaagca tcgaaaacgc aacagtggcc
      121 tgcgaaccat cctttcgcag cgccggaacc tccagaacgt cgcccgctcc gtagcgcgtt
      181 ctacctgttc gtatcgtccc cataaagcct tcccaatgcc tttttctaag atgctcggga
      241 atgataatgt cgagcgtttg tcctacagcc tcgttctcct gaaacccgaa tattcgctcg
      301 gcgccgcgat tccaaaattg aattcggccg tcagcgtcag cgtaaattat cgcatcgggg
      361 gcttcccgag cgagttgccg tgcgaattga tcgggatcga aattggccgc cattcggaaa
      421 ttcctctcaa gagtcgcttt ggtaggaaga ggatgatgcg gctgaaggag gcatgtcatc
      481 ggccgaaagc agcacacctg ttacgaccgc ggcggagccg cgccgacgga ttctgtttcg
      541 atagacctgc acctcttgag gctccattgg cttttcgcaa aggcactggg cctcatgcca
      601 agagacaacg atcaacctcg gccgcgttcc actgacaatg gagggattat gcgccgaaga
      661 tggactcctg atgtagtctg ccgaattcgg ctgtcgtgaa agacggcggc gcgagatcgc
      721 gggggaaggt gtagaggcgt ttgatggtgc ggcgcagcgc gtccagcgaa tggctgccga
      781 agtaagggtg ccggtgcaag cacgagccag gtcctgcggg ccgtgcgctc gatcagcgtc
      841 acgaagccgc ggtcggcgtc gctatatacg tgatcgcgtt agtgtagcaa gccgttgtaa
      901 gggacggcga cacgccagcg cgaatccatg tatcgtaccg gtctagcttg ggccgggtga
      961 cgttcgcatc ggtctggctg tgtattctta ggcttcagac tgcgaccttg ctatgctcga
     1021 gacttcgccg agtgcattcc ggcaagaaga attcgcgcga gcacgagccc ggcaaagcag
     1081 agagctgccg ccgccagcac gacagagata tcgactgcgc tcatcgcgcc aaagcgaaac
     1141 agcgaccgca gcgccggtat cgatacgccg agggcaagca cgatgatcgt gcccgacgct
     1201 agtgccgaca tgacgcgatt cggactcgcc gtccgccgct ccgaaagacg gttgacgaag
     1261 agcaaggcca agctgcacaa gaccatcgtc gtaaatgccg ttgcacgagc cacagcctcg
     1321 tcacgccccc ggccgagagc gagagtgaac acggagacga cgactaccaa tatgatgaac
     1381 ccctgaacgg tcgcgggtaa gatcgtcgcg cgatcgaaga gccggctctt ggggtttcga
     1441 ggcggacgct tcatcacgtc ggcctccgcc ggctcagcct cgaaggcgat cgagcaagcc
     1501 ggatcgatga tcaattgcaa aaacaggata tgaatcggca agagcaggag cggcatgcca
     1561 aaaagtaccg ggatgatgct catgcccacg atcggcacat gggcggccgt tacgaacgtt
     1621 atggccttac gaagattgtc gaagatccgc cggccttcct taacggcctc gagcatggag
     1681 ccgaagtcat catttaatag taccagtgcc gccgcctcgc gcgcgacatc ggtcccccgt
     1741 gaccccatcg caataccgac gtgtgccgcc ttcagcgcgg gtgcatcgtt gaccccatct
     1801 ccggtcatcg cgacgatttc tccgtcacgt ttgagcgctt gaacgatgcg cagcttttgc
     1861 tcaggggcaa ctcggcagaa gatgttgcag ccctcgacgt gtttcgaaag ttcatcgtcg
     1921 ctcatatcgt cgagctgcgc gccggtgata tagcgctcgg cattggccag cccgatcgcg
     1981 tgcgcgacgc tcacggcggt cgatgggtag tcgcccgtaa tgatgatcgt gcggatgccc
     2041 gccgagtagg cttccttaat cgcctgcgga acgccggggc gaacagggtc ttcgagcgcc
     2101 accagaccga cgaattggaa atcgaagtca tgttgcgagg atgggaggga tgcgccgggg
     2161 taaagcgcgc gcgccacgcc gagcactcga agtccctgcg acgcaagaac ctcgacggcg
     2221 ccggtgacgg ccgttgccgt atctgcagat aagtggcaca ggtccgaaat agcctccggg
     2281 gcgccttttg ccgcaatgac ccgctcgccg gcagctcctt gcgccgacca gacgcgcgac
     2341 gtcgcgagca tccggcgcga gaggggatac tcgccgacaa gggaccagct ccgatggacg
     2401 tgctcggtgc cggctagaaa tctt
//
LOCUS       DASRBJ010000033         8553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_155918,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000033 DASRBJ010000000
VERSION     DASRBJ010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8553
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155918"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(27..1175)
                     /locus_tag="VE968_00980"
     CDS             complement(27..1175)
                     /locus_tag="VE968_00980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50427.1"
                     /translation="MEWSFDSFFMAGFECSSHRRRDGVRLDLVRATSHGKHVGSDYSL
                     CASLGFRTIRDGIRWHLIERSPGNYDWSSWMPALEAAERAGVQVIWDLFHYGSPDHVD
                     QSAGDFAQRFTDFALAAIEVQQSVSGRPPMLCPLNEISFMAWAVEVGHFPASGPTDKG
                     RFKRELVRTATTCARAIRKQWPDAFITWAEPLVHVAPHDHRRQTRSAAEQYRQGQFEA
                     YDWITGVAEPELGGDPSFVDAIGVNYYPHNQWYLDGPTIPMGHHEYRPLSEMLVEVAT
                     RYNKPILITETGAEGSGKSSWLHYVCDEVRQAMDCGAAVRGICWYPITAYPGWDNSRH
                     ADAGLLSTVTSSGQRNVDERLLAEFDQQRDLFGLSPLARRAVAGGGRR"
     gene            1371..1643
                     /locus_tag="VE968_00985"
     CDS             1371..1643
                     /locus_tag="VE968_00985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50428.1"
                     /translation="MLKTAMLLAAGAAVLTASPADARYRHHHYYRHHYYSYYSPYRYS
                     YAYPAYGYSYPVYYSYPAYYAYPAYGYPSYSISIGLGGGYHHHRRW"
     gene            complement(1763..2773)
                     /locus_tag="VE968_00990"
     CDS             complement(1763..2773)
                     /locus_tag="VE968_00990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018580 - nitronate monooxygenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HZU50429.1"
                     /translation="MGHSRLKELMHRGTEFLGCDVAIMGGAMSWVSERNLVSAISNAG
                     GFGVIACGAMTADLLDREIAETRARTSKPFGVNLITMHPQLSELIDTCAKHHVSHVVL
                     AGGLPPAGAVERIKANGAKLMAFAPALALAKKLMRSNVDALVIEGMEAGGHIGPVSTS
                     VLAQEILPSVARDIPVFVAGGIGRGEAIAAYLEMGAVGVQLGTRFVCASESIAHPNFK
                     KAFIRASARDAIPSVQIDQRLPVIPVRALKNREMERFAAKQREVADLLDNGEIEMAEA
                     QLQIEHYWAGALRRAVIDGDVETGSVMAGQSVGMVNREEPVAAIIGELVDEAARALES
                     RG"
     gene            complement(2818..4056)
                     /locus_tag="VE968_00995"
     CDS             complement(2818..4056)
                     /locus_tag="VE968_00995"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010405089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HZU50430.1"
                     /translation="MARIVMKFGGTSMAGIERIRHVAALVKRESERGNEVAVVVSAMA
                     GETDRLVQLCKEAAPLYDAREYDVVVASGEQVTSGLLAITLSGMGVNARSYMGWQLPI
                     RASGHSSALIDHIDAHVLEAVFERRGIAVIPGFQGVTAEGDLATLGRGGSDTSAVALA
                     VAVKADRCDIYTDVEGVFTTDPRIVPRARKLSAITYEEMLELASVGAKVLQTRSVGLA
                     MRYRMALQVLSSFEDKPGTLIVSDEKIEELNMERQLVTGIAHDKNEARVTLMGLADRP
                     GAVAAIFAPLAKANINVDMIVQSGAGADRTSDLTFTVPTAALAHTVAELEKSKESIGF
                     AEIITDTNVVKVSAVGIGMRSNAGIAAKMFETLAERGINILAISTSEIKVSVLLPEEY
                     TELAVRVLHSAFGLDAREAA"
     gene            complement(4069..5355)
                     /gene="lysA"
                     /locus_tag="VE968_01000"
     CDS             complement(4069..5355)
                     /gene="lysA"
                     /locus_tag="VE968_01000"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HZU50431.1"
                     /translation="MDHFQLKNGALHCEDVALADIAAEVGTPVYVYSTATMCRHVDTL
                     RSALEAIPDPLIAYAVKANPNSAVIATLCAAGLGADVVSGGEYGRARAAGVESSKIVF
                     SGVGKTAEEMRLALAGGLYQFNLESLAEAEMLSQVATGMGLTAPVGFRVNPDVAAGGH
                     AKITTGMAQNKFGIAIGEALEIYGCAARLPGLAVRGIAVHIGSQLTSLEPLENAFSRI
                     EQLLRQLRSAGHKIDVADLGGGLGVPYDPDEPPPPSPGAYGAMVARKTRDWNSRLVFE
                     PGRLIVGNAGVLVSRVIRVKPGSTDPFVIVDAAMNDLMRPALYDAWHRIEAVQPTGNK
                     RVANVVGPVCETGDTFATGRDMDEVSPGDLVVFRTAGAYAAAMSSTYNSRPLTPEVLV
                     KGEKWQVVRPRIGIDQLIAGDRVPEWVGCCARDASG"
     gene            5414..6133
                     /gene="ubiG"
                     /locus_tag="VE968_01005"
     CDS             5414..6133
                     /gene="ubiG"
                     /locus_tag="VE968_01005"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010409939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008689 - 3-demethylubiquinone-9
                     3-O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HZU50432.1"
                     /translation="MVSSTIIEEEAKLFGALAGDWWNPNGSSAMLHKLNPVRLKYIRE
                     QIDRHWQCDECSRKPLEGKSALDVGCGAGLLTEPLARLGANVTGVDASSQVIAVANDH
                     ATASGLPINYRIGDISDVEDQFDLVTCMEVIEHVADPAVFLGLLAKRIRPDGLLILST
                     PNATAWARLLMITIAESTGRIPRGTHSFEKFISPQRMKLLLGDAGLMCIDVEGIAWSP
                     TRGLHLSDDVRLNYMICAVPT"
     gene            6257..7294
                     /locus_tag="VE968_01010"
     CDS             6257..7294
                     /locus_tag="VE968_01010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HZU50433.1"
                     /translation="MRSLFNFSSRDLAIDLGTANTVVYVRGQGIVTSEPSVVAMEIVN
                     GVRKVRAVGDDAKLMLGKTPDNIKTIRPLRNGVIADIEVAEEMIKHFIRKAHGGPSRF
                     SRGPEVVICIPSGATSVERRAIRDAVTNAGADRVSLIEEPMAAALGAGLPVAEPIGSM
                     VVDIGGGTTEVGVISLQGLALCRSARVGGDKMDDAIASYVRRNYNLLIGEGTAERVKL
                     EIGSAVRAGDGKGLTTLVRGRDVGRGMPGEIELCQSQVTEALSEPVNQIIEVVRTALE
                     NTQPEIAADVIDQGITMTGGGSLLREFATVLQDATGLPVRVADEPMSCVALGAGRTLE
                     DQVFRGALIAA"
     gene            complement(7303..7530)
                     /locus_tag="VE968_01015"
     CDS             complement(7303..7530)
                     /locus_tag="VE968_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50434.1"
                     /translation="MRVLRASLALAVPAALLTAAPADAKGCIRGALVGGVAGHYAGHH
                     ALAGAAAGCVAGHMYYKHKARQARAVVHRHR"
     gene            7659..8084
                     /locus_tag="VE968_01020"
     CDS             7659..8084
                     /locus_tag="VE968_01020"
                     /inference="COORDINATES: protein motif:HMM:NF013052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SET domain-containing protein-lysine
                     N-methyltransferase"
                     /protein_id="HZU50435.1"
                     /translation="MQLGSDCPSEMVRMLMVETELRASSIHGIGTFLLEDVKKGDLIW
                     RFDSRIDRIFSDSELQTMPERLQAFLAMYSTFHEQSGLWVLCGDNGRHFNHSDEPNTI
                     SLGPAFGDDLAAADLSAGTELTTDYFAICDAVRQRGTIY"
     gene            complement(8081..>8553)
                     /locus_tag="VE968_01025"
     CDS             complement(8081..>8553)
                     /locus_tag="VE968_01025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HZU50436.1"
                     /translation="IVEYFDETVDRMPMIHGNAALRAEIRRMTEWFDMKLYREAVEPL
                     MNERMRKRLVSREPPDTRILREAMRTASEHLDYLDYLLDHRRWLAGPGLSLADFTAAA
                     HLSVIDYLGALDWRGHKQTKDWYAVMKSRPCFRPLLAERMEVIVPPSHYDKVDF"
BASE COUNT         1733 a         2668 c         2465 g         1687 t
ORIGIN      
        1 gagggaaaga agattatcta ccccgcttaa cgtcgcccac cgcccgcgac cgcacgacgt
       61 gcaagcggtg aaagtccgaa gaggtcgcgt tgctgatcga actccgcaag cagccgttcg
      121 tctacattcc gctgcccgct cgacgtgacg gttgatagga ggcccgcatc ggcgtggcgg
      181 gaattgtccc agccgggata ggccgtgatc ggataccagc aaatgccgcg caccgctgca
      241 ccgcaatcca ttgcctgtcg aacttcatcg cacacgtagt gaagccacga cgacttccca
      301 ctgccctcgg cacccgtttc ggttatcagg atcggcttgt tgtaacgtgt cgccacttcg
      361 acgagcatct ctgacagagg gcggtattca tggtgcccca tcgggatcgt cggtccgtcg
      421 aggtaccact ggttgtgcgg gtagtagttg accccaattg catcgacgaa ggagggatcc
      481 ccgccgagct caggctcggc gaccccggtg atccaatcat aagcctcgaa ctggccttgc
      541 cgatattgct ccgcggcgct ccttgtctgc cgacgatggt catggggagc gacatgaaca
      601 agcggttcag cccaggtgat gaaagcgtct ggccattgct tgcgaatcgc tctcgcgcat
      661 gtcgttgcgg tccgcaccag ctcgcgcttg aagcgcccct tgtcggtcgg cccggacgcc
      721 ggaaaatgac cgacttccac cgcccatgcc atgaagctga tttcgttcaa ggggcaaagc
      781 atcggaggtc ggcccgaaac cgattgctgc acttcgatcg ccgcaagtgc gaagtccgtg
      841 aaacgttgcg cgaaatcgcc ggcggattgg tcgacgtggt cgggcgaacc ataatggaat
      901 agatcccaga tgacctgtac gccggcgcgt tcggcggcct cgagtgcggg catccagctc
      961 gaccagtcat aattgcccgg cgatcgctcg atcagatgcc accgaatgcc atcgcgaatg
     1021 gttcgaaatc caagactagc gcagagagaa taatcgcttc cgacatgttt gccatggctc
     1081 gtcgcgcgca cgagatcgag gcgaacgccg tcgcgccgac ggtgcgacga acactcaaac
     1141 ccggccatga agaagctatc aaagctccat tccatccaga atcacctcgg tgacggacat
     1201 gggcgctgca acagcactaa ctgggatatc ctgttaaggt tgccgtttgc ggtcacccgc
     1261 gcttttgtag cgccaacctg ccgagcacag gcaacaaccc cagcacgtgc ttcgttgtaa
     1321 cactatcacg tacgggcagg tacgcccgtc gagcgttaaa cgaggcctca atgttgaaaa
     1381 cagcgatgct actggcagcc ggcgctgccg tcctgacggc gtcacccgcc gatgcgcggt
     1441 atcggcacca tcattactat cgtcaccatt actacagcta ttactcacca taccggtaca
     1501 gctatgccta cccggcctat gggtattcct atccggtcta ttacagctac cccgcctatt
     1561 acgcttaccc ggcctacggt tatccgagct acagcatctc cattgggctt ggtggcggtt
     1621 atcatcacca ccgtcggtgg taggattgaa cgaggagccg gcgcgaaccc ggctcctctt
     1681 cccccagccg ggagaatcgc tcgtcacttg gcattgggga actccatttt ccttctaaga
     1741 aggagcggcg caggtcttcg cgtcagcctc ggctctcgag cgctcttgcc gcctcgtcca
     1801 ccagttcacc aatgatggct gcgacgggtt cttcccggtt caccatgccc acggactggc
     1861 cggccattac ggacccagtc tcaacatcac catcaatcac tgcccggcga agcgcaccgg
     1921 cccagtaatg ttctatctga agctgggctt ccgccatttc aatttcgcca ttgtcgagga
     1981 ggtcagcaac ttcccgctgc tttgcggcga accgctccat ttcacggttc ttcaaggcgc
     2041 ggactggaat taccggcagg cgctggtcga tctggacgct cggaatggca tcgcgcgccg
     2101 atgcgcggat gaacgccttc ttgaaattgg gatgcgcaat gctctcactc gcacagacaa
     2161 agcgggtacc gagctgcacg ccgacggcgc ccatctcgag ataggccgca atagcctcgc
     2221 ctcggccgat gccgccggcg acgaataccg gtatgtcgcg cgcgacgctt ggcaagatct
     2281 cctgcgccag aacggaggtc gacaccggcc cgatgtggcc cccagcttcc atcccttcga
     2341 ttacaagcgc atcaacattt gagcgcatca atttcttcgc aagcgcgagc gcgggagcaa
     2401 aagccatgag cttcgcgcca ttcgccttga ttctttcaac cgcgccggcc ggcggcagcc
     2461 cgccggcgag gaccacgtga ctcacgtggt gcttggcgca cgtgtcaata agctcgctca
     2521 gttgcggatg catggtgatg agattgacgc caaaaggctt gctagtacgc gccctggtct
     2581 cggctatctc gcgatcaagg aggtcagcgg tcattgcgcc gcacgcaatc acgccgaagc
     2641 caccagcatt ggagatagcc gatacgagat tgcgttcaga gacccagctc atggctccgc
     2701 ccatgattgc gacatcgcag ccgaggaatt cggttccgcg gtgcatgagt tccttcagcc
     2761 gcgaatggcc aatcgacgca tgcacgagcc gcggttcggc aagcacgccc tcaccgctca
     2821 tgcggcctcc cgagcatcaa ggccgaacgc gctgtgcaga acacgaacgg cgagctcggt
     2881 atattcttcg ggcaacaaca cggacacctt aatctctgac gtcgagatgg cgaggatatt
     2941 gataccgcgc tcggcgagcg tctcgaacat cttggcggcg ataccagcgt tcgaacgcat
     3001 tccgatccca acagcactaa ctttcacaac gttagtgtcc gtgattattt cggcaaatcc
     3061 gatcgattct ttggattttt cgagttcggc gacggtgtgc gcaagtgcgg cggttggtac
     3121 cgtgaacgtg agatcgctcg tacgatccgc tcccgcaccg ctctgcacaa tcatgtctac
     3181 attgatattt gcctttgcaa gcggcgcaaa aatggcagca acagcccctg gcctgtcggc
     3241 aagccccatc agcgtgaccc gagcttcatt cttgtcgtgg gcaatacccg tcacgagctg
     3301 ccgttccata ttcaattcct cgatcttctc gtctgaaacg atcagggtcc ccggtttgtc
     3361 ctcgaaggac gagagcacct gaagggccat gcgataacgc atcgccaagc cgaccgaccg
     3421 cgtttgaagc acctttgcac cgacggacgc cagttcgagc atttcttcgt aagtaatggc
     3481 gctgagcttc cgagcgcgcg gaacgatccg tggatcggtc gtaaagacgc cctcgacgtc
     3541 cgtgtaaatg tcgcagcggt ccgccttcac ggcgaccgcg agtgcgacag cggacgtatc
     3601 ggatccgccg cggcccaatg tcgcaagatc cccttccgcc gtcacgccct ggaaaccggg
     3661 aatgacagca atgccgcgcc tttcaaaaac cgcctcgaga acatgcgcgt cgatatgatc
     3721 gatgagggcg gaactatgtc cacttgcccg tatcggcagc tgccaaccca tgtaagatct
     3781 tgcgttgacg cccattccgc taagggtaat tgcaagcagc cctgaagtga cctgctcgcc
     3841 gcttgcgacg acgacgtcat attcgcgcgc gtcgtaaagc ggcgcggctt ccttgcatag
     3901 ctgaacaagc cgatcggtct cgccagccat tgctgaaaca acgacggcaa cctcgttgcc
     3961 tctttcactt tcgcgtttca caagtgccgc aacatgccgg atacgctcga tccccgccat
     4021 cgaggtcccg ccaaatttca tcacgatgcg cgccatgccg cggcggcttt agccgctcgc
     4081 gtctcgcgcg caacagccaa cccattcggg cacccggtca ccggcaatca gctgatcgat
     4141 cccgatgcgc ggacgcacaa cctgccactt ctcgcccttc accagtactt cgggcgtgag
     4201 gggacgcgaa ttataggtgc tcgacatggc tgccgcgtaa gctccggcag ttcgaaagac
     4261 gacgagatcg ccagggctaa cttcgtccat gtcgcgcccg gtcgcgaatg tatcgcccgt
     4321 ctcgcagacc ggaccgacca cattcgcaac gcgcttgttg ccggtgggct gaacagcctc
     4381 gatacggtgc caagcgtcgt agagtgctgg acgcataaga tcattcattg cggcatcaac
     4441 aatgacaaat gggtccgttg atcccggctt gacccggatt acccgggaca cgaggacacc
     4501 cgcattgccg actatcagtc gtcccggttc gaacaccagg cggctgttcc agtctcgtgt
     4561 cttgcgcgcg accatcgcgc catacgcgcc cggactaggt ggcggcggct cgtctgggtc
     4621 atagggcacg cccaacccgc caccgagatc ggcaacatcg atcttatggc ccgccgaacg
     4681 caattgcctc aataactgct cgatgcggga gaatgcgttc tccagcggct cgaggctcgt
     4741 cagctggctg ccgatgtgca cggcgattcc gcgcacggcg agccctggaa gccgcgcggc
     4801 acaaccgtaa atctcaagag cttcgccgat cgcaatcccg aacttgttct gcgccatgcc
     4861 ggtcgtgatc ttggcatggc ctccggcggc tacgtccgga ttgaccctga agccgaccgg
     4921 agctgtaagt cccattcccg tcgcgacttg cgagagcatc tcggcttcgg cgagcgattc
     4981 aaggttaaac tgataaaggc ctccggcgag cgcgagcctc atttcctccg cggtttttcc
     5041 gacgccggaa aaaacgattt tggagctctc aacgcccgcc gcgcgggcac ggccatattc
     5101 tccacctgaa acgacgtccg cgccgagccc ggcagcacaa agagtagcga ttacggcgct
     5161 attcgggttc gccttcacgg cataggcgat cagcgggtcg ggaatcgcct caagagcaga
     5221 gcgcagggtg tcgacatggc gacacatggt ggccgtcgaa tagacataaa cgggcgtgcc
     5281 gacttcggca gcaatgtcgg caagggcgac gtcttcgcaa tgaagcgccc cgttcttcaa
     5341 ctgaaagtgg tccattttca cgccaacgca tcaggtgctt cccctttgca agtgggcgag
     5401 gcatggagat gtcatggttt catccaccat catcgaggag gaggctaagc tctttggcgc
     5461 tctcgcgggc gactggtgga atccgaacgg ctcttcggca atgctccaca agctcaatcc
     5521 ggtgcgcctg aaatatattc gcgagcaaat cgaccggcat tggcaatgcg acgaatgttc
     5581 gcgcaagccc ctcgaaggaa agtcggctct cgatgtgggc tgcggggcgg ggctgctgac
     5641 ggagccactg gcgaggcttg gcgccaacgt cacgggcgtt gatgcctcat cccaggtgat
     5701 tgccgttgcc aacgatcatg caacggcctc cgggctgccc atcaactatc ggatcggaga
     5761 catttcggac gtcgaagacc aattcgacct cgtcacctgc atggaggtga tcgaacatgt
     5821 cgccgatcct gccgtgttcc tcggccttct cgcaaagcgg atccgacccg atggcctcct
     5881 catcctctcg acgcctaacg ccaccgcctg ggcgcgattg ctcatgatta ccatcgctga
     5941 atcgaccggt cgcataccaa gaggtacgca ttccttcgag aagttcattt cgccgcagcg
     6001 aatgaagcta ctgctcggcg atgccgggtt gatgtgcatc gatgtcgaag ggatcgcctg
     6061 gtcaccaacc cgcgggctcc atctcagcga cgacgtgcgg ctgaactata tgatctgtgc
     6121 cgttcctacc tagcttgaac tcagctcaac gcgattcgcg aacgcccggc tggtaacggg
     6181 cattaaccat atggctctgg gccaaaccta gcctaagcct ttgatattcc gattcagaat
     6241 ggccgggggg ccgacaatgc gttctctctt caatttctca tcgcgtgatc ttgcgatcga
     6301 ccttggaacc gcaaacacgg tcgtttacgt ccgaggccaa gggatcgtca cgagcgagcc
     6361 ctcggtcgtc gcgatggaga tcgtgaatgg cgtacgcaag gtgcgcgccg tcggcgacga
     6421 tgccaagttg atgcttggca agacgccgga caacatcaag accatcaggc cccttcgaaa
     6481 cggcgtcatc gccgacattg aagttgccga agagatgatt aagcatttca tccgcaaggc
     6541 tcatggcggt ccgagccgtt tctcccgcgg acccgaagtc gtgatttgca ttccatcggg
     6601 cgcgacatcg gtcgaaagac gggcaatccg cgacgctgtg acgaatgccg gtgccgatcg
     6661 ggtgtcactc atcgaagagc caatggccgc agcccttgga gcgggactgc ccgttgcaga
     6721 gccaattgga tcgatggtcg tcgacatcgg cggcggcacg accgaagtcg gcgtcatatc
     6781 cctccagggc ctcgccctct gccgctcggc ccgtgtcggc ggcgacaaga tggatgacgc
     6841 gatcgcttca tacgtccggc gcaactacaa tctgctgatt ggtgaaggta cggccgagcg
     6901 cgtgaagctt gaaattggct ccgccgtccg cgccggcgac ggcaagggtc taacgacctt
     6961 ggtccgcggg cgcgacgtcg ggcgcggaat gcccggcgaa atcgagctgt gccagtcgca
     7021 ggtcaccgag gctctcagcg aaccagtcaa tcagatcatc gaggtcgtgc gcacggctct
     7081 tgagaatacg cagcccgaga ttgccgccga cgtaatcgac caaggaataa caatgacggg
     7141 aggcggctcg ctgcttcgcg aattcgcgac ggtccttcag gacgcaacgg gcctgccggt
     7201 ccgagtcgct gacgagccaa tgagctgcgt tgcgctcggt gccgggcgaa cgcttgaaga
     7261 ccaggttttc cgcggcgcgc tgatcgccgc ctaagccgtt cttcagcggt ggcggtggac
     7321 taccgcacga gcttgccgtg ccttgtgctt gtagtacatg tgcccggcga cacagcctgc
     7381 cgcagcgccg gcaagcgcgt gatggcctgc ataatggccc gccacgccgc cgacgagcgc
     7441 gccacgaatg cagcccttcg catcagccgg agcggccgtg aggagcgctg caggaacagc
     7501 aagtgcaagg cttgcacgaa gtacacgcat cgagggttct ccctaaattg ttgacagcag
     7561 tcggaacgcc ttactggcct atcggctcag attaaatttc atacttcgtt cgccagtgcc
     7621 attgggatca tcttgcgccc ggaaccatgc tgctcaaaat gcagttgggc tcggattgtc
     7681 cgtcggagat ggtacgcatg ttaatggtcg agacggagct tcgagcgagt tccatccacg
     7741 ggatcggcac cttccttctg gaggatgtca aaaaggggga tctcatctgg cgcttcgaca
     7801 gccgcatcga tcgaatcttt tccgattccg agctgcagac catgccggag cggctccagg
     7861 cattcctcgc gatgtactcg acgttccacg agcagtcggg gctctgggtg ctttgcggtg
     7921 acaatggccg gcacttcaat cattccgatg agccgaacac catctcgctc gggccggcct
     7981 tcggcgacga cctcgcggca gccgacctca gcgcgggcac cgaactcacg accgattatt
     8041 tcgcgatctg tgatgccgtg cgccagcggg ggaccatcta ctagaagtcg accttgtcgt
     8101 aatgcgatgg agggacgatt acctccatcc gttcggcaag aagcggccga aagcacggcc
     8161 tcgacttcat gaccgcgtac cagtctttgg tctgcttgtg cccccgccag tcgagcgcgc
     8221 cgaggtagtc gatgacgcta agatgcgcgg cggcggtgaa gtcggcaagg ctaagccctg
     8281 gaccggcgag ccaacggcgg tgatcgagca gatagtcgag gtaatcgaga tgctcggaag
     8341 cggtccgcat tgcctcacgc aagatgcggg tgtcgggcgg ttcgcgacta acgaggcgct
     8401 tgcgcatacg ctcgttcatg agaggctcga cggcttcgcg gtacagcttc atgtcgaacc
     8461 attccgtcat ccgacgaatt tcagcgcgaa gcgcagcatt gccgtggatc atcggcatcc
     8521 gatcaacagt ctcgtcgaaa tattcgacga tcg
//
LOCUS       DASRBJ010000034         6906 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_155972,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000034 DASRBJ010000000
VERSION     DASRBJ010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6906
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155972"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..657
                     /locus_tag="VE968_01030"
     CDS             <1..657
                     /locus_tag="VE968_01030"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007687118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HZU50437.1"
                     /translation="PNFDERQLPVSMIVLHYTGMPDAEGALDRLTSPEAKVSCHYLID
                     ENGSTYRLVDEEMRAWHAGKSRWRGISDINSASIGIEIVNPGHEFGYRPFPDEQIAAL
                     IPLVADIKERHGIGRGNVVGHSDVAPARKEDPGELFPWHALAKRRLALPSPTRDLIDP
                     YWTDAGFLLALERFGYDVTDPQKAVIAFQRRFRPDLIDGIIDGECRAKLLALLLPRPQ
                     "
     gene            673..1053
                     /gene="rnpB"
                     /locus_tag="VE968_01035"
     ncRNA           673..1053
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VE968_01035"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            1109..1648
                     /locus_tag="VE968_01040"
     CDS             1109..1648
                     /locus_tag="VE968_01040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HZU50438.1"
                     /translation="MPRQKRSNDWGFPRWRSYGDKGRSAAKVRLCDREGCSDIGDRPA
                     PKAPHSRERWYFCEAHAAEYNKNWNYFAGLSPEEAARRAAEEEQGAKGFRQSAQWQWA
                     GPGDGSRSREEMRALDVLELESDADFSAVKAAHRRLVKETHPDANPGNEEAAKRFKQV
                     QAAYDVLRKAEERRGSLAS"
     gene            complement(1743..2162)
                     /locus_tag="VE968_01045"
     CDS             complement(1743..2162)
                     /locus_tag="VE968_01045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HZU50439.1"
                     /translation="MAGLPPLSDILEEFEFADAEDRYRLLIDLGRKLEPMPDVLKTDA
                     TKVRGCSASVWVYPTIENGRLHFLADSNAAITKGIVALVLSAVDGKSAAEIAAMDVAG
                     ALDPFHLSRHLSANRTQGVPNMIGLVKQTASRYAENS"
     gene            complement(2181..2450)
                     /locus_tag="VE968_01050"
     CDS             complement(2181..2450)
                     /locus_tag="VE968_01050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50440.1"
                     /translation="MNPPEFLIAIIILVLAFRLVSLRMGADPQGRRGWDRPWGPLANN
                     AQDDGETLRLREEVQELKERIKVLERITVEKENSLAKEIESLRDR"
     gene            complement(2447..2725)
                     /locus_tag="VE968_01055"
     CDS             complement(2447..2725)
                     /locus_tag="VE968_01055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008997224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50441.1"
                     /translation="MSHPAEWVWVLIPLAAIGIAPFKMWMRVKERQITAQTSLAAEKS
                     AQYAQHMERFEARLRVLEQIVTDSGAQTAAQIEALRDQERIPLKDKSQ"
     gene            complement(2772..3074)
                     /locus_tag="VE968_01060"
     CDS             complement(2772..3074)
                     /locus_tag="VE968_01060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50442.1"
                     /translation="MGPADVLLALIIIGLPTIMLTVIGNRFFRFREKKLELDANLAAE
                     KAAHYAARTSELEERVRVLEQIVTDGGAQTAAQIEALRRSTQRLGRKSEPTANVTA"
     gene            complement(3074..3418)
                     /locus_tag="VE968_01065"
     CDS             complement(3074..3418)
                     /locus_tag="VE968_01065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50443.1"
                     /translation="MDPHVSEILGFLLHLLPLVALIVAIGVGGATLNNWLKIKNGYPL
                     SNSWGMPLHPKRDEESLERIKLLTSENAQLRAELGSIKDRLETLERIATDQPSRLARD
                     IDALGLAKGGNA"
     gene            complement(3441..3902)
                     /gene="pspC"
                     /locus_tag="VE968_01070"
     CDS             complement(3441..3902)
                     /gene="pspC"
                     /locus_tag="VE968_01070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017670902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspC"
                     /protein_id="HZU50444.1"
                     /translation="MAYDRYPVERRSNQPQPLPSETPYFGEQPASRTRFYRDKRNGRV
                     MGVCAGIADYTGFDVSLVRVGFLAALFMSGGSILPFYFIMGFVSPTKPVALERADTEQ
                     QQFWQGVRASPTRAARDIRSRLKDIDRRLADIESYVTTENRSLAREIEQLR"
     gene            complement(3906..4178)
                     /gene="pspB"
                     /locus_tag="VE968_01075"
     CDS             complement(3906..4178)
                     /gene="pspB"
                     /locus_tag="VE968_01075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009823244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009271 - phage shock [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspB"
                     /protein_id="HZU50445.1"
                     /translation="MDAIVIPIVVVGILFLGLPWLVFHYITRWKTAATLTSGDEKLLD
                     ELHEAARRLDDRLCTIERIMTAENPNWRQQCMPSREDSRRLLADGD"
     gene            complement(4182..4850)
                     /gene="pspA"
                     /locus_tag="VE968_01080"
     CDS             complement(4182..4850)
                     /gene="pspA"
                     /locus_tag="VE968_01080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspA"
                     /protein_id="HZU50446.1"
                     /translation="MSIFSRTRDIFAANITELLDRSEDPAKMIRMVILEMEETLVEVR
                     ASAARCIADGKEMRRALSRLDELQRNWTEKAELALSKEREDLAKAALIERQKATDMAE
                     GLREEIKVIEDTLKGYEGDIAKLQNKLREARARQNAIATRYESAVTRARARELMNGSR
                     TEDAFSKFEILERRADFAEGRADALGMTGPKSLEEEIAELKAAEAVDKELEAMKAALK
                     ARGK"
     gene            5035..6081
                     /gene="pspF"
                     /locus_tag="VE968_01085"
     CDS             5035..6081
                     /gene="pspF"
                     /locus_tag="VE968_01085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010413077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein operon transcriptional
                     activator"
                     /protein_id="HZU50447.1"
                     /translation="MERTEQFIGQSLAFLDAVERASRAAPLNRPVLVIGERGTGKELI
                     AERLHHLSTRWAGPLIVMNCAALPENLIEAELFGHEAGSFTGAAKTRHGRFEEADGGT
                     LFLDELGTLSMPAQDRLLRAVEYGEITRIGASKPVSVDVRIVAATNENLPAQVDNGRF
                     RADLLDRLSFEVITLPPLRARQGDIPLLAEHFGRRMAVELDWPNWPGFTSRATAELET
                     YSWPGNVRELRNVVERAVYRHEDPERPVDEIVFDPFHSPWAPSSAASMAAAPTLVAAN
                     EANELPPAPQSPVMAGPTNDFRAAVSDYERQLLEDALRRNRFNQRATAAALNLSYDQL
                     RHALKRHKLQDSAA"
     gene            6189..6740
                     /locus_tag="VE968_01090"
     CDS             6189..6740
                     /locus_tag="VE968_01090"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZU50448.1"
                     /translation="MKLILLAASVAAVSPLAASEAAVLTLGGPLSELCYQAAAGADGR
                     SSAIESCTRALVEESLSARDKASTYVNRGIVLMNAGRFDEANADFDTAVRLQQKLPDA
                     WLNKGFLKLREGDGRDALVLIQKAIEEGAGDRALALFGRGVAHEQMGDVKAAYLDLMH
                     AHQLAPHWVLPRDYLARYRVAQR"
BASE COUNT         1351 a         2049 c         2076 g         1430 t
ORIGIN      
        1 ccgaacttcg acgagcggca attgccggtc tccatgattg ttcttcacta tacgggaatg
       61 cccgacgccg agggtgcgct cgatcgcctt acctcaccgg aagcaaaggt ctcgtgccac
      121 tatctgatcg acgagaacgg atcgacctat cgtctcgtcg acgaggaaat gcgcgcctgg
      181 cacgcgggga agtctcgctg gcgcggaatc agcgacatca actcggcgag catcgggatc
      241 gagatcgtca atccgggcca tgaatttgga tatcggccgt tccccgacga gcagattgca
      301 gcgctcatcc cgctggttgc cgatatcaag gaacgacatg ggattggccg cggcaatgtc
      361 gtcgggcact ctgacgttgc ccccgcgaga aaggaggacc cgggcgagct ctttccttgg
      421 catgctcttg ccaagcgacg cctcgccttg cccagtccga ctcgcgacct catcgatcct
      481 tattggactg atgccggctt tctccttgcg ctcgagcgtt ttggctatga tgtgaccgat
      541 ccccagaagg cggtgattgc cttccagcgg cggttccggc ctgatctcat cgacgggatt
      601 atcgacggag aatgtcgcgc aaagctgctc gccttgttgc tgccgcgtcc tcaatagccc
      661 atattgcgcg tgccagaggg ccgggcggcc gcggcttgca aatgcaaggc gaggaaagtc
      721 cgggctccac gggatcacgg tgccgggtaa cacccggcgg cctccacgcg agcgggggtc
      781 agggagagtg ccacagaaag gataccaccc ggcttgcacg ggcaaggttg aaagggtgcg
      841 gcaagagcgc accgcggccc tggcaacagg gccggcacgg taaaccccac cgggtgcaag
      901 accgaatagg gacgctgcat gagcttggtt ccggctcggc gtccgggttg gttgcttgag
      961 gggcgaggca actcgtctcc tagaggaatg gccgcacagt ctcgcttgcg aaagcgcgat
     1021 ggacagaacc cggcttacag gccctctggc gaattccttg ggtcggcggc tcgcattcga
     1081 gacgccggca ccctaaacgg cgagaagtat gcctcggcaa aagagatcaa atgactgggg
     1141 gttcccgcgc tggcgctcct atggcgacaa gggccgctcg gcggccaagg tgcgcctatg
     1201 cgatcgtgaa ggttgcagcg acatcggcga tcgacctgca cccaaagcgc cacatagtcg
     1261 cgaacgatgg tatttctgcg aggcgcatgc cgctgagtac aacaagaact ggaactattt
     1321 cgctggcctc agtcccgagg aggccgctcg acgtgccgcg gaggaggagc agggggcgaa
     1381 ggggtttcgg caatcggcgc aatggcagtg ggcaggaccc ggtgacggca gtcgttctcg
     1441 cgaagaaatg cgtgcgctcg atgtgctcga gcttgagagc gacgccgatt tcagcgcggt
     1501 aaaggccgcg catcgccggc tcgtcaagga aacgcacccc gatgcaaacc caggcaacga
     1561 ggaagcggca aagcgattca aacaggtgca ggcggcctat gacgtgcttc ggaaggccga
     1621 agaaagacgc ggcagcctag cgtcctagag gaagtgcgcg cgggaaagcc gaggagcgcg
     1681 cgcagcttgt cgcggctcgg acttgtctaa tcggcggcga tctgctgact gcaagcgccc
     1741 tcttatgagt tttcggcgta gcggcttgcc gtttgcttca cgaggccgat catgttcggc
     1801 actccttgtg ttcggttcgc gctcaagtgc cttgagagat gaaatggatc gagcgcaccg
     1861 gcgacgtcca tcgccgcaat ttctgccgct gacttgccat cgaccgcgct tagaacgaga
     1921 gcaacgatgc ccttggtaat cgcagcgttg ctgtcggcaa gaaagtgcag gcgaccgttt
     1981 tcgatggtcg gatagaccca gactgacgcg gaacagccac gtacttttgt tgcatcggtc
     2041 ttgagtacgt cgggcatcgg ctcgagcttg cgcccgagat caatcagaag ccggtagcga
     2101 tcctcggcat cggcgaattc aaactcttca agaatgtcgg ataagggagg tagtccggcc
     2161 atttaggggc cctagcatcg ctatcgatct ctcagcgact cgatttcctt cgcgagactg
     2221 ttttccttct cgacggtgat tcgttcgagc accttgatgc gctccttgag ctcttgcact
     2281 tcttctcgca ggcgcaacgt ttcgccatca tcttgcgcat tgttcgcgag cggcccccat
     2341 gggcgatccc aaccgcgccg cccctgaggg tcggctccca tgcgcaggga aacaaggcga
     2401 aacgcaagaa ccagaatgat gatcgcgatt aggaactcgg gagggttcac tgggacttgt
     2461 ccttcagagg gattcgttcc tggtctcgaa gcgcttcgat ctgggctgcc gtttgggcgc
     2521 cactatcggt gacgatttgc tcaagaacac gaagtcgcgc ttcaaagcgc tccatgtgct
     2581 gtgcatattg agcgctcttt tcggcagcga gactggtttg cgccgtgatc tgccgttctt
     2641 tcacccgcat ccacatcttg aatggtgcga tgccaatggc tgctagcggg attagaaccc
     2701 agacccattc agctggatga ctcatcttct ttgcccctta tcggttcatg ttgtgcgcgg
     2761 cggcgctatg ttcaagcggt aacgttggcg gtcggttcac tcttccgtcc gagccgctgc
     2821 gttgaacggc gcaacgcctc gatctgggca gccgtctgag cgccgccgtc ggtgacgatc
     2881 tgctcaagga cgcgcacgcg ctcctcgagt tcgctggtgc gagcagcata atgggctgct
     2941 ttctctgccg cgagattcgc gtccagttcg agcttctttt cgcgaaagcg aaaaaatcga
     3001 ttgccaataa cggtaagcat gatcgtcggc aggccgatga tgatcaatgc gagcaagacg
     3061 tccgccggtc ccattaggca ttgcctcctt ttgcgagccc aagtgcatcg atatcccgag
     3121 ccagccgaga cggctggtcc gtcgcgattc gctcaagggt ttcgagccga tccttgatcg
     3181 aacccagctc tgctcgaagc tgcgcattct cgctggtcag aagcttgatt ctttcgagcg
     3241 attcctcgtc gcgctttgga tgaagcggca ttccccagga attcgagagc ggataaccgt
     3301 tcttgatctt gagccagttg ttcaacgtcg ctccgccgac gccaatagcg acgatcagtg
     3361 ccactaaagg taggaggtgc aagagaaacc ccaggatttc agatacgtgc ggatccatcg
     3421 attccaccct tcttcgacga ttagcgtagc tgctcgatct cgcgtgcaag tgagcgattt
     3481 tcggtcgtga cgtagctttc gatgtcggcg agacgtcgat caatgtcctt gagacgcgag
     3541 cggatgtcgc gtgccgctcg tgttggcgaa gcccttacgc cctgccagaa ttgctgctgt
     3601 tcggtgtcgg ccctttcgag cgcaaccggc ttggttgggc tgacaaagcc catgatgaaa
     3661 tagaatggca ggatgctgcc gccactcatg aacagcgcag cgagaaaccc aacgcgcacg
     3721 agactgacgt caaatccggt ataatcggca ataccggcgc agacgcccat gacacgtccg
     3781 ttccgcttgt cgcggtaaaa gcgcgtgcgg cttgccggct gttcgccaaa atagggcgtc
     3841 tcgcttggca gcggctgcgg ctggttagag cgtcgctcga caggatagcg gtcgtaagcc
     3901 atcgatcagt ccccgtcggc gagcaggcgt cgactgtctt cacgactggg catgcactgc
     3961 tgtcgccagt tcggattttc ggcagtcatg atgcgttcga tcgtgcacag gcgatcatcg
     4021 agccggcgag cggcttcgtg gagttcatca agcagcttct catcgcccga cgtgagcgtc
     4081 gcggccgtct tccagcgcgt gatgtaatga aacacgagcc agggcagccc gagaaagaga
     4141 attccgacaa cgacgatcgg gatgacaatc gcatccatta tttacttccc cctagccttg
     4201 agcgcggcct tcattgcttc gagctccttg tccacagctt cggcagcttt caattcggca
     4261 atttcttctt cgagactctt cgggcccgtc attccaagcg cgtcggcgcg cccttcggca
     4321 aaatcggcgc gccgctccaa tatctcgaac ttcgaaaaag cgtcctcggt gcgactgccg
     4381 ttcataagct ctcgagcacg cgcgcgcgtc acggcacttt catagcgtgt cgcgatcgca
     4441 ttctggcgcg cgcgtgcttc gcgcagcttg ttctgaagct ttgcgatgtc gccttcataa
     4501 cccttcaacg tatcctcaat gaccttgatc tcctcgcgaa gaccttccgc catgtcggtc
     4561 gccttctggc gttcgatgag cgccgccttc gcgagatcct cgcgctcctt ggatagcgcg
     4621 agttcggctt tttcggtcca attgcgctga agttcatcga gacgcgagag cgcacggcgc
     4681 atttccttgc cgtcggcaat gcaccgagcg gccgaggcgc gtacctcgac gagcgtttcc
     4741 tccatttcga ggatcaccat acggatcatc ttcgccggat cttccgagcg atcgagcagc
     4801 tcggtgatgt tggccgcgaa gatatcccgt gttcgggaaa aaatactcat tcggtactcc
     4861 gcattcgaaa ttagggccct aaacttgtcc aaagacaagc aatctataag ccaattttca
     4921 aaaaacgcag attttcagct attttcccga acattcatcg actgacggcg tgaaattcct
     4981 tgccaaatgg tgggatctgg caccaacagt cggccagaat tcttaataag ccttatggaa
     5041 cgcacggaac agttcatcgg ccagagcctc gcctttctcg acgccgtcga gcgagcgagc
     5101 cgcgctgcgc cgcttaaccg accagtgctc gttattggcg agcgcggcac gggcaaggag
     5161 ctgattgctg aacgcctgca ccacctgtcg acgcgatggg ctggaccatt gatcgtcatg
     5221 aattgcgccg ctcttccgga gaatctgatt gaagccgagc tctttggaca cgaggcagga
     5281 agttttactg gcgcggccaa gactcgtcac ggccgcttcg aggaggccga cggcggaaca
     5341 ttgttcctgg acgagctcgg aacgctctcc atgcctgccc aggaccgact gctgcgcgcc
     5401 gtcgaatatg gcgagattac gcggatcggt gcgtcgaagc cggtctcggt cgacgtcagg
     5461 atcgttgccg cgaccaatga aaatctcccg gcgcaggtcg acaatggccg gtttcgagcc
     5521 gaccttctcg atcggctttc gttcgaagtg atcaccttgc cgccgttgcg tgccaggcaa
     5581 ggcgacatac ccttgctcgc ggagcatttc gggaggcgca tggcggtgga actcgactgg
     5641 ccaaactggc caggctttac gtcgcgcgca acggccgagc tcgagaccta ttcctggcca
     5701 gggaatgtgc gcgagctaag aaacgttgtc gaacgcgccg tctaccgtca cgaagatccg
     5761 gagcggcccg tcgacgagat cgttttcgac ccgtttcact cgccgtgggc gccatcatca
     5821 gcggcgagca tggcggcagc gccgacgctg gtcgcggcca atgaagccaa tgagctgccg
     5881 ccggcaccgc aaagcccagt gatggccggt ccgacgaatg actttcgtgc cgccgtctct
     5941 gattacgagc gccagcttct cgaagacgca cttcgtcgga accgattcaa tcagcgagca
     6001 accgcggcag cgttgaatct aagctacgat cagcttcgac acgcgctcaa acggcataaa
     6061 ttgcaggaca gcgccgccta gcaagaccag cggtcgcagg aagggcatct gaccgttggt
     6121 cgattggcgc gagcgttcga ccgttcgata tgctaaatcc gcggcattgg agagacgagg
     6181 aggcttcgat gaagttgatc ctgctcgcag cgtcggtcgc tgccgtgtca ccgcttgctg
     6241 caagtgaggc cgcggtgctc actcttggag gtccgctttc agaactctgc taccaggcgg
     6301 cggccggtgc ggatggtcgc tcgtccgcga tcgaaagctg cacgcgagcg cttgtcgagg
     6361 aatcgctttc cgctcgtgac aaggcctcga cctacgtcaa ccgcggcatt gtgctcatga
     6421 acgccggacg ctttgacgag gccaacgccg atttcgacac ggccgtcagg ctgcagcaaa
     6481 agctgcccga cgcatggctc aacaagggat ttctgaagct tcgcgagggc gacggccgcg
     6541 acgcactcgt cctcattcaa aaggcgatcg aggaaggggc cggcgaccgg gcgttggcac
     6601 ttttcggccg aggcgtcgcc catgagcaaa tgggcgacgt caaggcagcc tatctggatc
     6661 ttatgcacgc gcatcaactt gccccgcact gggtgctccc gcgggactat ctcgctcgat
     6721 accgagttgc ccaacgctaa gcactttagc gcagttcgtt gcgccgctgt cgtttccggc
     6781 ttgaattttc cggcggcacg cgcatttgca ccagcaagcg ggcggggggc tttgctgcgg
     6841 gttggcgacg gcttccggag cccgcccgaa ttcttcggag gagtgctgtc tgatgccgtt
     6901 ccagct
//
LOCUS       DASRBJ010000035         2417 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_511631,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000035 DASRBJ010000000
VERSION     DASRBJ010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2417
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_511631"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1433
                     /locus_tag="VE968_01095"
     CDS             <1..1433
                     /locus_tag="VE968_01095"
                     /inference="COORDINATES: protein motif:HMM:NF024581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HZU50449.1"
                     /translation="GQARAELLRMMYGDELLACFREFKAIWDPTNRLNPGKAIEPFPI
                     DSNLRLGLSYRPKKLDTHFSFPRDHGSFAHATTRCVGVGKCRRRTVGNEVMCPSYLAT
                     SEEKHSTRGRAHLLHEMARGEVIVDGWKSDAVEDALSLCLSCKGCKADCPVGVDIATL
                     KSEFRSHYYAHKRRPRSAYAMSRISELARLASHAPAFSNIVGRTSLAKNLAGIHHGAK
                     LPRFASQTFEKWFRDRGSRTIGTDRLLLWPDTFNNQFRPKTLIAATQLLERAGFRIAL
                     PSSSLCCGRPLYEWGFLEKAKKQFERTFSVLAAEIAAGTPIVVLEPACASTFKDELLN
                     LFPDRDEAKSLSAQVHYFSDFVRDRIDRFPRFLKGGSALVQPHCHHHAVIGFENERKI
                     LDLLELSAEQPPQGCCGMAGAFGMAQETFDVAREIGERVLLPRVRALDPTTVIVADGF
                     SCREQIEMNAGRTTVHVAELLRERMI"
     gene            1430..1753
                     /locus_tag="VE968_01100"
     CDS             1430..1753
                     /locus_tag="VE968_01100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50450.1"
                     /translation="MNKHSPEESVRFEPRDVPPLLPLWLAAGLAGFVIIVLGGIALGY
                     PLANRQENRGPTQPLPPMPRLQPAPASDLSAYRAAKLRELENSPVPIEVAMQQTAQQG
                     WGPPK"
     gene            1750..>2417
                     /locus_tag="VE968_01105"
     CDS             1750..>2417
                     /locus_tag="VE968_01105"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HZU50451.1"
                     /translation="MIRTLVIAAVSALFIAAPAAARIDANSFSGLAFRQHPGAQLPIG
                     TRFMDETGRATTLGASMGGRPSVLVLEYLRCQNLCSLVLAGTVSAIQRGQLLPGKDIN
                     LVAVSIDPRDTTNDAAKLSAMYSRRFADASLAAQGIHFLTGSPAEVRKLADAVGFPFK
                     LDRQSDQYAHPAGFVVTTSDGRISRYMLGLNPPAAGLREAVAEARRGAVTPAAHPLLL
                     LCFG"
BASE COUNT          472 a          750 c          706 g          489 t
ORIGIN      
        1 acgggcaagc gcgtgccgag ctcttgcgga tgatgtatgg tgacgagctg ctggcgtgct
       61 tccgcgaatt caaggcaatc tgggatccaa cgaaccgact caatcccggc aaggcgatcg
      121 agccattccc gatcgactcg aacctgcggc tcggccttag ctaccgtcca aagaagctag
      181 atacgcactt ctcttttcca agggatcatg ggtcgttcgc acacgcgacg acgcggtgtg
      241 ttggtgtcgg caagtgccgg cgccgaacag tcggaaacga agtaatgtgc ccgtcttacc
      301 tcgcaacatc ggaggaaaaa cattcgacgc gcgggcgcgc gcacctgctt catgaaatgg
      361 cgcgcggcga agtgatcgtt gacggctgga agagcgatgc cgttgaggat gcgctgtcgc
      421 tgtgcctctc atgcaagggt tgcaaggccg attgccccgt tggtgttgat atcgcgactc
      481 taaaatcgga attccggtct cattattatg cccataagcg gcgacctcgc tctgcttacg
      541 cgatgagcag gataagcgaa cttgcaagac tcgcttcgca tgctccagca ttttcaaata
      601 ttgtcgggag aacatcgctc gcgaagaatc ttgctggcat tcaccacggt gcgaaactgc
      661 cgcgcttcgc gtcgcagacg tttgagaaat ggttccgcga tcgcgggagc cgaacgattg
      721 gaaccgaccg cctgctgctc tggcccgata cgttcaacaa ccagttccgg cccaagactc
      781 tgattgccgc aacccagctc cttgaacgcg ccggtttccg gatcgcgcta ccatcgtctt
      841 cgctgtgctg cggccgtcca ctttacgaat ggggatttct tgagaaggcg aagaagcaat
      901 tcgagcgcac cttctcggtc cttgctgccg agatagctgc cggcactccg attgtcgttc
      961 tggagcccgc gtgcgcatca accttcaagg acgagcttct gaaccttttt ccggaccgtg
     1021 acgaagcgaa aagtctgtcc gcgcaagttc attatttctc ggatttcgtg cgcgaccgga
     1081 tcgatcgctt ccccaggttc ctcaagggcg gctcggcgct cgtacagccg cactgccacc
     1141 atcacgcggt catcggattt gaaaacgagc gcaagattct agatctcctc gagctgagcg
     1201 cggagcaacc gccgcaaggc tgctgcggaa tggctggtgc gtttggaatg gcgcaagaga
     1261 cattcgacgt tgcgcgggaa attggcgagc gagtgttgct tccgcgagta cgagcgctcg
     1321 atccaacgac cgtcattgtc gccgacgggt tcagctgccg ggaacagatt gaaatgaatg
     1381 cgggccgcac aacggtccac gttgccgaac tgctgcggga gcgcatgata tgaacaagca
     1441 ctcgcccgaa gagagcgtac gctttgaacc gagggacgtg ccaccgctcc tgccgctctg
     1501 gctcgcagcc ggactcgccg gcttcgtcat cattgtactt ggcggaatcg ctcttggtta
     1561 ccccctcgcc aatcggcagg aaaatcgtgg accgacgcag ccgctccctc ccatgccccg
     1621 gcttcagccc gcaccagcga gcgatctctc cgcctatcgg gcagccaagc tgcgcgagct
     1681 cgagaattca ccggtgccga ttgaagttgc gatgcagcaa accgcgcagc aaggctgggg
     1741 accacccaag tgatccgtac tcttgtcatt gctgcggttt ccgctctctt cattgcggcg
     1801 ccggccgctg cgcgcatcga tgcgaacagc ttttctggcc tcgccttccg acagcacccg
     1861 ggcgcccagc tcccgatcgg aacgcgattt atggacgaga cgggccgcgc gacgacgctt
     1921 ggagcatcca tgggcggtcg cccttccgtg ctcgtgctcg aatatctacg ctgccagaac
     1981 ttgtgcagcc tcgtactggc cgggacagtc agcgcaattc agcgtggcca attgcttccg
     2041 ggaaaggaca tcaacctcgt cgcggtcagc atagacccgc gagatacgac gaatgatgcc
     2101 gcgaagcttt ccgcaatgta cagccgccgc ttcgccgacg cgtcgctagc agcacagggc
     2161 attcacttcc tgaccggctc ccctgccgag gtccgcaaac ttgccgatgc cgtaggcttc
     2221 ccgttcaagc tcgatcggca gagcgatcaa tatgcgcatc ccgcgggctt cgtggtgacg
     2281 acgagtgacg gccgaatttc ccgctacatg ctcggtctaa acccgcctgc cgcgggactt
     2341 agggaggcgg ttgcggaggc gcgccgaggc gccgttacgc cggcggcaca cccactgctt
     2401 ctcttgtgct tcggcta
//
LOCUS       DASRBJ010000036         2515 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_511877,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000036 DASRBJ010000000
VERSION     DASRBJ010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2515
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_511877"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..365
                     /locus_tag="VE968_01110"
     CDS             <1..365
                     /locus_tag="VE968_01110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HZU50452.1"
                     /translation="IGIVTQDRHSPPESGVLAKAASGALERIPWARVVNLARALDEIG
                     EAGFWRVALSGDSETDLRDALGPRRVALVLGAEGAGLRPNTREHCDAVARLPISDAVE
                     SLNVSNAAAVALYAASIA"
     gene            365..982
                     /locus_tag="VE968_01115"
     CDS             365..982
                     /locus_tag="VE968_01115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007687659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase 2 family
                     protein"
                     /protein_id="HZU50453.1"
                     /translation="MVRTKESIRSAVQELASREPAFAAVIERHGIPEPRRSDPGAHTL
                     LRTIVGQQVSVAAARSMWGKLEQAFGAPPDLALLLAATDEELRAAGMSRQKAGYIRSL
                     AELVISGELDLDNLPQDDEQAIELLTRIKGIGRWSAEIYLLFAEGRPDVFPAGDLAVL
                     VELGKLMGLDSRPQEKELRRLAEAWKPHRGAAAILAWHSYNSEVL"
     gene            1055..1456
                     /locus_tag="VE968_01120"
     CDS             1055..1456
                     /locus_tag="VE968_01120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50454.1"
                     /translation="MKRVDLYFLLLATFLLICGAVLGIVMGTKEDFQLAPVHAHLNLA
                     GWASLGLFGLAYRAYPQMAATRLAFYHFIVSAIGSVLLPIGIGFAVLRNSPGIAIVGS
                     ILWFLGVLLFGVQLLRLTGNRYEQRTLSPAE"
     gene            complement(1458..2168)
                     /locus_tag="VE968_01125"
     CDS             complement(1458..2168)
                     /locus_tag="VE968_01125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50455.1"
                     /translation="MFLLWRRRQPEYYAGGADFDLFVPAAPAGPGPQRAPVPQLQPRT
                     VSPPETQPSPAPPSPKPVTSPKGIVSTRLRPVLELAVQPVRCLLEDERVVLEFELELF
                     NSGAAPARSVLAEASLFNAGQNQDQELARFFAKPLGAGERVDSILPMKRLAFVSQVIA
                     PRTAIQEYELGGRKVFVPVLAFNAIYSWSGGEAQTSLAFLVGRDTASEKLGPLLLERG
                     PRQIVKLAARPLPTALRT"
     gene            2311..2472
                     /locus_tag="VE968_01130"
     CDS             2311..2472
                     /locus_tag="VE968_01130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50456.1"
                     /translation="MLVTVASGAFDIVAALSAGNVAGGSVRGVALAARAALWRVCCCE
                     ELIVALPAE"
BASE COUNT          482 a          726 c          803 g          504 t
ORIGIN      
        1 caattggtat cgttactcaa gaccgccatt ccccaccgga aagtggcgtt ctcgcaaagg
       61 ccgcctcggg cgctctcgag cggataccct gggcgcgcgt cgtcaatctt gcccgcgctc
      121 tcgacgagat aggcgaagcc ggattctggc gggtggcctt aagcggcgac tctgagactg
      181 acttgcggga tgcgctcggg ccgcggcgag ttgcgctcgt ccttggagcc gaaggtgctg
      241 gacttcggcc gaatacgcgc gaacattgcg atgcggttgc ccgcctgccg atcagtgacg
      301 cggttgagag cctcaatgtt tcaaacgcgg cggccgtcgc gctctacgca gcaagcatcg
      361 cctgatggtg cgcaccaagg aaagcatccg cagcgccgtc caggaacttg cgagccgtga
      421 accggctttt gccgcggtga ttgagcgcca cggcattccg gaaccgcgcc gcagtgatcc
      481 tggtgcgcac actctcctgc gaaccatcgt cggccaacaa gtgagcgtcg ctgcggcgcg
      541 gtccatgtgg ggaaagctcg aacaggcatt cggcgcgcca cccgatcttg cgcttcttct
      601 tgccgcaacg gacgaggaat tgcgcgctgc aggcatgtcg cggcaaaagg caggctacat
      661 ccgaagcctc gccgagctgg taatctccgg tgagctcgac ctcgacaatc ttccgcagga
      721 cgatgaacag gcgattgaac tgctgacaag gatcaagggc attgggcgct ggtccgcgga
      781 aatctatctg ctgttcgcag aaggccgccc cgacgttttt ccggctggcg accttgccgt
      841 gctcgtcgag cttggaaaac tgatgggact cgattcaagg ccacaagaga aggagcttcg
      901 acgacttgcc gaagcttgga agccgcatcg tggagctgcg gcgatcctcg cgtggcacag
      961 ttacaattcg gaagtgcttt aatcgagaaa aattgacttg agaaaagagc gcacacggtg
     1021 cgaagttcgt gcgagcgaat ggggagaatg ttcgatgaaa cgcgttgatc tgtacttcct
     1081 gctgcttgcc actttccttc ttatctgtgg agcagtcctt ggaattgtca tgggcaccaa
     1141 ggaagacttc cagctggcac ccgtgcacgc gcatctcaat cttgccggct gggcctcgct
     1201 tggattgttc ggcctcgctt atcgcgcata cccgcaaatg gcggcaacgc gacttgcttt
     1261 ctatcacttc atcgtgtcgg caatcggttc cgtgctgctg ccaatcggca ttggatttgc
     1321 cgttcttcgg aattcgccgg gcatagcgat cgtcggctcg atactatggt tcctcggagt
     1381 actcttgttc ggtgtgcagc ttctgcgtct taccggcaat cgttacgagc agcgaaccct
     1441 cagtccggcc gaatgaatta ggttcgaagc gccgtcggca agggtcgagc cgcaagcttc
     1501 acgatctgtc gcggaccacg ctccagcaag agtgggccga gcttctcgct ggccgtatct
     1561 cgaccgacca ggaaagcgag tgacgtctgc gcttcaccgc cgctccagga atagattgca
     1621 ttgaaggcaa gcactgggac gaacaccttg cgaccgccca gctcatattc ttggattgcc
     1681 gtgcgtgggg cgattacctg gctcacgaac gcgaggcgct tcatcggaag aattgagtcc
     1741 acgcgttcac cggcgcccag cggctttgca aagaaccttg cgagttcttg gtcttggttt
     1801 tggccagcat tgaataggct agcttcagcg aggacgctgc gcgccggagc cgcgccggaa
     1861 ttgaacaatt ctagctcgaa ctcgagcacg acacgctcat cctcgagcag gcatcgcact
     1921 ggttgaacgg caagttctaa caccggccgt aggcgcgtcg aaacgatgcc tttcggcgaa
     1981 gtgacgggct ttggtgaagg cggtgcagga gagggctgtg tctccggtgg cgaaacggtg
     2041 cgaggctgca attgaggcac tggcgctcgc tgcggacctg gtccagcggg tgccgccggc
     2101 acaaagagat cgaagtccgc gccacccgca taatattctg gctgtcggcg gcgccaaagc
     2161 aagaacatgg tcgcgccggc aagtgccaac gcagcgaaaa gccagggcca gagcaggagc
     2221 ttgtgctctg ggccgagcga attcggccga gcaggcacag acgaggtcgg aagcggtgcg
     2281 gcttggctcg aaagcggact tggggtcgac gtgctcgtta ctgtcgcaag cggggcattc
     2341 gacatcgtcg cggcactgtc ggcgggcaat gtcgccggcg ggagcgttcg aggagtggca
     2401 cttgcggcgc gcgcggcact gtggcgcgtt tgttgttgcg aggaactgat tgtcgccctt
     2461 ccggcggaat gagcgatgtt atcgtcgatc gggccgcccg gcgccacggt tgccg
//
LOCUS       DASRBJ010000037         2167 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_717043,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000037 DASRBJ010000000
VERSION     DASRBJ010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2167
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_717043"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            183..656
                     /locus_tag="VE968_01135"
     CDS             183..656
                     /locus_tag="VE968_01135"
                     /inference="COORDINATES: protein motif:HMM:NF025013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4142 domain-containing protein"
                     /protein_id="HZU50457.1"
                     /translation="MLRKLLFAGAMIASSTAIAAPPAKFLNEAIQGDNSEIHLGQLIA
                     SEGKSPDVRSFGNTLVSDHTQAKSQAADVARQLHVPVPDSMMPEARAEYTKLQHLHGP
                     AFDREVKRYMINDHEKDISKFEQQARSGDKRTAALAREQLPTLRKHLKIAQSLRG"
     gene            708..2048
                     /locus_tag="VE968_01140"
     CDS             708..2048
                     /locus_tag="VE968_01140"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HZU50458.1"
                     /translation="MDDSACLIDTHPEPRARMLGKWMSLAMVVGSMVGSGIYLLPTTV
                     APFGANIVTAFVLTGCGTMCLAFALARLAARFPGGPFVYVDRAFGEMPAFVTLWCYTL
                     SQVTGVAGVAVAVAGALGHVFPQVLSGAGLIAVALGSILLLLLVNLRGARSAGALQVG
                     TVLVKLVPLLAVLALVVARFGSGQQVEKLAPMPLSIGGTTAAAALILFSLTGFECAAM
                     AANVTRDSTTTVPRATIVGTGFTAVMYLLTTVATLLLLPSAAAAKSGAPFADAIAPLL
                     GAAAGTLVALIGAVSAFGTANSLLLVAAESSRTMAEAGDLPRIFARPNKLGAPAGSLY
                     ICAVAAALLVLASSSKNFVSVYVFITLVSTVLALVLYVVCASAALKLRAGGNGTILLV
                     IGVLYSIAMFVGAGVDVLLSATVLALAGLPIRIISRWRSASTQQAAANQAAPQE"
     gene            complement(1981..2154)
                     /locus_tag="VE968_01145"
     CDS             complement(1981..2154)
                     /locus_tag="VE968_01145"
                     /inference="COORDINATES: protein motif:HMM:NF013044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50459.1"
                     /translation="MITRVQLGMQSPSYKAGPLGTSEVCLRSFARKVRLFIPEARLDS
                     PPPAGWTRFANAR"
BASE COUNT          377 a          699 c          633 g          458 t
ORIGIN      
        1 cctgcaccca ttcctaccga ttggctgccc tgacctggga aaagaaaagc ccgcatctaa
       61 atccctcgtt caatccggcg cgcgcttggc cgctgacgcc acctcggtca agcgacagta
      121 ggaacctgag gcccgtcgca acagttgctg gtcacgtcag attgctgagg agatttcgag
      181 aaatgttacg caaactcttg ttcgctggag cgatgatcgc gtcttcgaca gcaattgccg
      241 cgccgccggc aaaattcctg aacgaagcga tccagggaga caattcagaa attcacttgg
      301 gtcaactgat cgcgtcagag ggaaagagcc ccgacgtccg gagtttcggc aataccctgg
      361 ttagcgacca cacgcaggcg aaaagccaag ccgccgatgt tgcacgccaa ttgcacgtgc
      421 ccgtcccgga ttcgatgatg cccgaggcgc gcgccgaata taccaagctc cagcaccttc
      481 atgggccggc gttcgaccgc gaagttaaac gctacatgat caatgaccat gaaaaggaca
      541 tttccaagtt cgagcagcag gcgcgaagcg gcgacaagcg cacggcggca cttgcccgtg
      601 aacagctgcc gacgcttcgc aagcatctca agatcgccca gtcgctgcga ggctaacgct
      661 tcgctctaag attgcgctgc ttgccgtgac ctgcgaagcg cgaggtcatg gatgactcag
      721 cctgcctgat cgacactcat cccgagccgc gcgcccgcat gctcggcaag tggatgagcc
      781 tcgcgatggt cgtcggctcg atggttggct cgggcattta cctgcttcct accacggtcg
      841 cgccgttcgg agcgaatatc gttacggctt tcgtcctcac cggatgtggg acgatgtgcc
      901 tagccttcgc gctagcgcgc ctcgcggcgc gatttccggg tggcccgttc gtctacgttg
      961 atcgcgcttt cggcgagatg ccggccttcg tgacgctctg gtgctacacg ctctcccaag
     1021 taacgggtgt cgccggcgtc gccgtcgcgg ttgctggagc gctcggtcac gtcttccccc
     1081 aagtgctctc cggcgcagga ctaattgccg tcgctctcgg ctccatcctt ttgctcctgc
     1141 tcgtgaatct gaggggcgct cgatcagccg gtgctcttca ggtcgggaca gtccttgtga
     1201 agctcgtgcc gttgcttgcc gtgctggcgc tcgtggtcgc gcgatttgga tcggggcagc
     1261 aagttgagaa gcttgcgcca atgcctctta gcattggcgg gacgacggcc gccgcagccc
     1321 tgatcctatt ctctctcacc ggctttgaat gcgcggcaat ggctgccaat gtcacgcgcg
     1381 attcgaccac aaccgtgcca cgggcaacca tcgttggcac tggattcacc gccgtcatgt
     1441 atctcctgac gacggttgcg acgcttctgc tcctgccaag cgcggctgcc gcaaaaagcg
     1501 gagcgccttt tgccgacgcg atcgcgccgc tgctcggcgc tgcagccggg actctcgttg
     1561 cactcatcgg cgccgtaagc gccttcggga ctgcaaattc gttgctcctc gtcgcggcgg
     1621 aatcgtcgcg gacgatggcc gaggcaggcg accttcctcg gatatttgcg cgtccaaaca
     1681 agcttggtgc tcccgccggt tccctctaca tttgtgccgt cgctgcagca ctcctcgtcc
     1741 ttgcaagctc gtcgaaaaat ttcgtcagcg tctacgtctt catcaccctc gtttcgacgg
     1801 tccttgcact cgtgctctat gtcgtgtgcg cgagcgcggc cttgaagctg cgcgccggcg
     1861 gcaacgggac aatcctgttg gtgatcggtg tcctttattc gattgcaatg ttcgtcggcg
     1921 ccggcgtcga cgtcttgctc tcggcgaccg tgctcgcgct cgctggcctt ccgatccgga
     1981 ttatctcgcg ttggcgaagc gcgtccaccc agcaggcggc ggcgaatcaa gccgcgcctc
     2041 aggaatgaac aggcgaactt tccgcgcaaa gctcctgagg caaacctcgc tcgtgccgag
     2101 cggcccagcc ttgtagctgg gcgactgcat cccaagctgg acacgcgtga tcaactcggt
     2161 gtcctcg
//
LOCUS       DASRBJ010000038         5519 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_105825,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000038 DASRBJ010000000
VERSION     DASRBJ010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5519
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105825"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1275
                     /locus_tag="VE968_01150"
     CDS             <1..1275
                     /locus_tag="VE968_01150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50460.1"
                     /translation="QLQRAADSAAVAGVYDRENANGATTNTPTAVCNDLAVNLHTWMP
                     LLDSTPCTGTVGSYSSLTYPADTTYESNQVAVTLRIQQRLPFSSLFLSAAPIITASAT
                     AAGISTGHPCALALNSSGTAMNYNGNATVNAPTCILYSDSASSNSASAGGSSSVTAKA
                     VAGVGGISQSNNFNVSQYLPYSPTIPDPFSNITPDPTQMHCAGHYVTTKVKGVSTTTW
                     VYDALSESTDMANSTYLDSSGNVQTGANCWTSLSTSASNKTGLTVPNSYSGPIYIDAN
                     AAHGGTGSANMQGIFNCSSCTIVLTNSDSTSNTIGTYSANAQSQTNITSPTTGTYAGI
                     AVFQDRRKSSVSTDRINGGSNNVLTGAVYFPHDTLQINGTGTATSLCAMWVANNISFL
                     GNSSIAISSPDDTACSGKEPGGGSVHIVRLVA"
     gene            1272..1787
                     /locus_tag="VE968_01155"
     CDS             1272..1787
                     /locus_tag="VE968_01155"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE family protein"
                     /protein_id="HZU50461.1"
                     /translation="MIILRNERGAAVIELALVAPVLALTVVGIVDMSNAFSKKLGLEQ
                     GAQRAIEKIMNTTGDSTVESTLANEVQCQVNGSTTTGGVTTCNTSPTQTITVTWRLDC
                     TTGGTTTSQSTTNSATYDGYVSACTGTKAGYVQVNVTDKYTPLFPIHFAAFNSGDSTY
                     HLSATAGMRTF"
     gene            1787..2269
                     /locus_tag="VE968_01160"
     CDS             1787..2269
                     /locus_tag="VE968_01160"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE family protein"
                     /protein_id="HZU50462.1"
                     /translation="MTRAPIAADEHGAAAIEMAFALPVLIVMIWAFVQLAQVYRAMAG
                     IQQALGQGARYATLCIPGVSGCSAPSPGSGPSPASDSVKAKIQNSVYGIGPGTFTVDD
                     PSVGTSGTGSYYDLTVCYQQPTNLLLFPGPTIKVSRSKRVWIASTNVTASTAASSCAS
                     "
     gene            complement(2266..3018)
                     /locus_tag="VE968_01165"
     CDS             complement(2266..3018)
                     /locus_tag="VE968_01165"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HZU50463.1"
                     /translation="MSEHVRVEREGGVLAITLARPERRNAITIAMYGALADAIAGSGD
                     HTRLITIRGEGQDFAAGNDLADFLAVRPGGDEEIAVWRFLRALAGCEIPMVAAVHGNC
                     VGIGTTMLLHCDLVVADDSARFSMPFVDLALVPEAASSLLLPRIAGRRRAARYLLLGE
                     TFGAEEAETIGLVSHRVSQGQLDSKLDEIVAALLAKPAEALRQTQRLLRHGTREELLE
                     RMKLESTAFAERLTSPEVAEAITAFFAARSKN"
     gene            3108..3761
                     /gene="fsa"
                     /locus_tag="VE968_01170"
     CDS             3108..3761
                     /gene="fsa"
                     /locus_tag="VE968_01170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HZU50464.1"
                     /translation="MKFFADTAEISEIRELAATGLLDGVTTNPSLIHKSGRKFLEVVK
                     EIAGVVKGPVSAEVVALDYEGMMREAEVIRKIADNIAIKVPLTPAGLKACKSLSSDGT
                     MVNVTLCFSSAQALLAAKAGATFISPFIGRLDDISTDGMQLISDIRLIYDNYDYGTEI
                     LAASIRHPMHVVESAKMGADIATVPPKIIWQLFKHPLTDAGIASFLKDWQETGQKIA"
     gene            3915..4076
                     /locus_tag="VE968_01175"
     CDS             3915..4076
                     /locus_tag="VE968_01175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HZU50465.1"
                     /translation="MSKFLKLIRNEEGATAIEYGLIAALIAVAAIGAMQGIGNKLNTT
                     FNNVSNHLG"
     gene            complement(4149..4913)
                     /locus_tag="VE968_01180"
     CDS             complement(4149..4913)
                     /locus_tag="VE968_01180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HZU50466.1"
                     /translation="MRHGPLFEGDHRCHYPRIRPGRLISYSALLITRHVINPVQLIAP
                     MLWIALAAAAQLSAPEPINLKKWFSFEDVPSYLMQMGTGIWNVGIRVNVASDGAVQNC
                     EVESGSGIPKLDKLTCMIVTVRAKFRPAHFADGSPAHGAYRTSVNWLVQDAPGELIER
                     SKPDLDITVRQLPRAFGKSSLVRVMFAVDANGNASSCTGEPGDNFEQAKNEPALVPLA
                     CEQFMNSYKPTVARDTAGNAVPSVQDGLVRFTVKGQ"
     gene            4905..5441
                     /locus_tag="VE968_01185"
     CDS             4905..5441
                     /locus_tag="VE968_01185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 domain-containing protein"
                     /protein_id="HZU50467.1"
                     /translation="MAHLRQRLGAVEEANQDLIAFARGHSGAVASIHEAVLAAIDADT
                     VEALLHVVTQEWPLILGIDSVAVSLVVGAEGFRADGSGVQIVDPAILRRAIERVEGVE
                     MRAVERGHPLFGPACDLIRAEALVRIACEPPLPSGLLALGQRAELKLDARHGSELLMF
                     LGNSLAAMIRKCLTTPQE"
BASE COUNT         1097 a         1775 c         1632 g         1015 t
ORIGIN      
        1 caattgcagc gggccgcgga ttctgcggcg gtcgccggtg tttatgaccg tgaaaatgcg
       61 aacggggcga cgaccaatac gccgaccgcg gtttgcaacg acctcgcggt caacttgcac
      121 acttggatgc ccctactgga ctcgacgccg tgcaccggaa cggtgggcag ctattccagc
      181 ctgacctatc cggcggacac gacatatgaa tccaaccagg tagccgtcac gctgcgaatc
      241 cagcagcgtc tgccgttcag ctccctgttc ctgagtgctg cgccaataat caccgcaagc
      301 gcgaccgccg ccggcatatc gacgggacac ccgtgtgcgc tggcgcttaa cagctccggg
      361 acagcgatga attacaatgg caatgccacg gtgaacgcgc cgacctgcat cctctactcc
      421 gactccgcgt cgtcgaattc cgcgagcgcg ggtggaagct cttcggtgac ggccaaggcg
      481 gtcgccggtg tcggcggcat ttcgcaatcg aacaatttca acgtgtcgca atacctcccg
      541 tactcgccga cgattccgga tccgttctcc aacatcacgc cggatccgac gcagatgcat
      601 tgcgccggcc attatgtgac gacgaaggtc aaaggtgttt ccactaccac ctgggtctac
      661 gatgctctca gcgagagcac cgatatggcg aactcgacct atctcgactc gtccggcaac
      721 gtgcagacgg gcgcgaactg ctggacgtcg ctctcgacct cagccagcaa caagacaggg
      781 ctgaccgtac cgaacagcta ttccggaccg atctatatcg acgcgaacgc cgcccatggt
      841 gggacgggta gtgcaaacat gcagggcatc ttcaactgca gcagctgcac gatcgtcctg
      901 acgaattccg attccacgtc gaacaccatc gggacctact cggcaaacgc gcaatcgcaa
      961 accaacatta cgtcgccgac tacgggcact tatgcaggaa tcgcggtttt ccaggaccgc
     1021 cgaaagtcaa gcgtgagcac cgataggatc aacggcggct caaacaacgt cctgacggga
     1081 gcggtctatt tcccgcacga taccctgcag atcaacggaa ccggtacggc cacttcgctg
     1141 tgtgcgatgt gggttgccaa caacatctcg tttctgggca acagctcgat cgcaatcagc
     1201 agccccgacg ataccgcctg cagcggcaag gagccgggcg gcggttcggt gcacatcgta
     1261 aggcttgtcg cgtgattatt cttcggaacg agcgcggcgc cgccgtgatc gaattggcgc
     1321 tggtcgcgcc ggttctcgcg ctcacggtcg ttggcatcgt ggacatgagc aacgccttca
     1381 gcaagaagct ggggctcgag cagggcgccc agcgagcgat cgaaaagatc atgaacacga
     1441 cgggggactc tacggtcgaa agcacgctcg cgaacgaggt ccaatgtcag gtcaacggta
     1501 gcacgaccac cggcggggtc acgacctgca acacgagccc tacccagacc atcacggtga
     1561 cctggcggtt ggactgcacc acgggtggaa cgacgaccag ccagtcgacg acgaactcgg
     1621 ccacttacga tggatatgtg agtgcatgca cgggcacaaa ggccgggtat gtgcaggtca
     1681 acgtgaccga caagtacacg cccttgttcc cgatccattt cgccgctttc aacagcggcg
     1741 attccacata tcacctttcc gcgactgcag gcatgaggac gttttgatga cgcgcgctcc
     1801 aatcgcagcg gacgagcacg gcgctgcggc gatcgagatg gccttcgctt tgcccgtcct
     1861 tatcgtgatg atctgggcat ttgtgcagct cgcgcaggtg tatcgcgcga tggcgggaat
     1921 tcagcaggca cttggccagg gcgctcggta cgcgacgctg tgcattcctg gcgtcagcgg
     1981 ctgcagcgcg ccctctcctg gaagcggtcc ttccccggct tccgatagcg tcaaagcgaa
     2041 aattcagaac agcgtctacg gcatcggccc tggtacgttt accgtggacg atcccagcgt
     2101 cggaaccagc ggcaccggtt cctattacga tctgacagtt tgctaccagc agcccaccaa
     2161 tctgctgctc tttccggggc caaccatcaa agtctctcgg tcgaagcgtg tttggattgc
     2221 atcgacgaac gtcaccgcct caactgctgc gagcagttgc gcgagctagt tcttcgatcg
     2281 agccgcgaag aaggcggtga tcgcctcggc gacctcgggc gaggtcaggc gctccgcgaa
     2341 agccgtgctc tccaacttca ttcgctcgag cagttcctcg cgagtgccgt ggcggagcag
     2401 ccgttgggtc tggcgtaagg cttcggcggg cttcgcgagc agcgccgcga cgatctcatc
     2461 gagcttcgaa tcgagctgtc cctgggacac tcgatggctc acaagcccga ttgtctcagc
     2521 ttcctcggcg ccgaacgtct cgccgagcag cagatagcgc gccgctctcc gccgtccggc
     2581 aatccgcggc agcagcagcg agctcgccgc ctccggcacc agcgcgagat cgacgaaggg
     2641 cattgagaag cgcgcactgt cgtcggcgac caccagatcg cagtggagca gcatcgtcgt
     2701 tccgattccg acgcaattgc cgtggaccgc ggcgaccatc gggatctcgc atccagcaag
     2761 cgctcggagg aaccgccaga ccgcgatctc ctcatcgcct ccgggccgca ctgcgaggaa
     2821 gtcggcgagg tcgttcccgg ccgcgaagtc ttggccttcg ccgcggatcg tgatcaggcg
     2881 ggtatggtcc ccggagccgg cgatggcgtc ggcaagcgct ccgtacatgg cgatcgtgat
     2941 tgcattgcgc cgctccggcc gggcgagcgt gatcgccagg accccgcctt cgcgttcgac
     3001 ccgcacatgc tcgctcattc cctgcctcca tcccggaacg cgtgacgcct tgcgccgcag
     3061 gcgctattgc ccgcccatcc accaaagccg gagcccacgc aatcgccatg aaattcttcg
     3121 ccgacactgc tgaaatttcc gaaatccgcg agctcgccgc gaccggcctg ctcgacggag
     3181 tgacgaccaa ccccagcctg atccataagt cgggccgcaa gttcctcgag gtggtgaagg
     3241 aaatcgccgg agtggtgaag ggcccggtat cggcggaggt ggtcgcgctc gattacgaag
     3301 ggatgatgcg cgaggccgag gtgatccgca aaatcgccga caacatcgcg atcaaggtgc
     3361 cgctgacccc cgccgggctg aaggcctgca agtcgctgtc gagcgacggg acgatggtca
     3421 acgtcacgct ctgcttttcg tccgcccagg cgctgctcgc cgcgaaagct ggcgccacct
     3481 tcatttcgcc gttcatcggg cggctcgacg acatcagcac cgacggcatg cagctgatct
     3541 cggacatccg gctgatctac gacaattacg attacggaac cgagattctc gccgccagca
     3601 tccggcaccc gatgcacgtc gtcgaatcgg cgaaaatggg cgcggacatc gcgaccgtgc
     3661 ccccgaagat catctggcag ctgttcaagc atccgctgac cgacgccgga atcgcgagct
     3721 tcctcaagga ctggcaagaa acgggtcaga agatcgcctg aagacactcg cttctatttg
     3781 tctttaaccc ttccgcaacc gtccgacgta acgcttcttc aaccgctcga cggttagttc
     3841 cagtcatccc tgtcgtggaa agcagggcgc ggcggctcac gcctccgcaa aaatggaacc
     3901 aaggagcgaa gaccatgagc aagtttctca agctgattcg taacgaagag ggcgcgaccg
     3961 ccatcgagta cggcctgatt gcggccctta tcgccgttgc ggcgattggc gcgatgcagg
     4021 gcatcggcaa caagctcaac acgacgttca acaacgtgtc gaaccacctc ggctaagccg
     4081 aggtcctcga cttcgtgaac ggaagcggcg gcgcctcacg gcgccgccgt ttttgttttg
     4141 cgcagtggct actggccctt aacggtaaag cggaccaagc cgtcctgtac cgacggaaca
     4201 gcattacctg cagtatccct cgccacagtc ggtttgtagc tgttcatgaa ctgctcgcac
     4261 gcgaggggta cgagcgcggg ttcattcttc gcctgctcga aattatcgcc gggctccccc
     4321 gtgcaggacg aggcatttcc gttcgcatca actgcgaaca tcacgcgcac cagagatgac
     4381 ttgccaaagg cgcgagggag ttgccgtacc gtgatgtcca aatccggctt gcttcgctcg
     4441 attagttcgc caggcgcgtc ctgaacaagc cagttcaccg aggtccggta agcgccatgt
     4501 gcaggtgatc catcggcaaa gtgcgccggt cgaaactttg cacgcactgt cacaatcata
     4561 catgtgagtt tatccaattt cgggatcccg cttcccgact ccacctcgca attctgaact
     4621 gcgccgtcgg aagcgacatt gacgcggatt cccacgttcc aaatgccagt gcccatctgc
     4681 atcaggtaag atggaacgtc ttcgaaactg aaccacttct tcaggttgat cggctcaggg
     4741 gcactgagct gcgcggcagc ggcgagggcg atccacaaca tgggtgcaat aagttgcact
     4801 ggattaataa catgtcgagt gatcaggagc gctgagtagg aaattaaccg gcccgggcgt
     4861 attcttggat aatggcaacg gtgatcccct tcgaagagcg ggccgtggcg catttgcgtc
     4921 agcggctcgg cgccgtcgaa gaagcgaacc aggacctcat cgccttcgcc cgcggccatt
     4981 cgggagcggt cgcctcgatc cacgaagcgg tgctcgccgc gatcgatgcg gacacggtcg
     5041 aagcgctgct tcacgtcgtc acccaggaat ggccgctgat cctcggcatc gattcggtcg
     5101 cggtgtcgct ggtcgtaggc gcagaagggt ttcgtgcgga tggaagcggc gtgcagatcg
     5161 tcgatccagc gatcctccgc cgcgcgatcg agcgtgtcga aggagtagag atgcgcgcgg
     5221 tcgaaagggg ccatcctcta ttcggccccg cctgcgacct catccgcgcc gaggcgctgg
     5281 tccgcatcgc ctgcgagcct ccgctgccgt cgggcctgct cgcgctcggc cagcgggccg
     5341 agctcaagct cgatgctcgc cacggctcgg aattgctcat gttcctcggc aactctcttg
     5401 cggctatgat ccgcaagtgc ctcacgacgc ctcaagagta gtccatccgg cgagcgcgct
     5461 cgccgctcgc tgggcctcct atctccagca cgaccggcgc cgctcccagc ataccgtcc
//
LOCUS       DASRBJ010000039         2482 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_105849,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000039 DASRBJ010000000
VERSION     DASRBJ010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2482
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105849"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..370
                     /gene="ccsA"
                     /locus_tag="VE968_01190"
     CDS             <1..370
                     /gene="ccsA"
                     /locus_tag="VE968_01190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HZU50468.1"
                     /translation="TWWEWDGRLTSMLILFFLYLGYIGLASAERERGGEGRITAIYGL
                     VGAINLPIIHYSVLWWRTLHQGESIGLTGSTIDSSILWPLPLTMIGFTCLFAAAALMR
                     MRAQLAEAKVEARMRRMSIQ"
     gene            367..495
                     /locus_tag="VE968_01195"
     CDS             367..495
                     /locus_tag="VE968_01195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50469.1"
                     /translation="MNPWPFVIAAYTVAICLTVALLLWAFVSMRRAEAGAEALRNR"
     gene            492..932
                     /gene="ccmE"
                     /locus_tag="VE968_01200"
     CDS             492..932
                     /gene="ccmE"
                     /locus_tag="VE968_01200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008830267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HZU50470.1"
                     /translation="MKPKNQRLVLLGSAIVAVLVAVLLGMWGLRNQASFFYTPADIVA
                     GKARDGRIARLGGMVERGSIQRQADGVTILFALTDGKATTPVMYRGIVPDLFREGSGA
                     VAEGRMHNGTFVADQILAKHDERYMPPQLGNLAAEHKAGKTLEK"
     gene            929..>2482
                     /locus_tag="VE968_01205"
     CDS             929..>2482
                     /locus_tag="VE968_01205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015456909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HZU50471.1"
                     /translation="MIAEAGLAALWLAAALAAYQFLLMLLALRSEIDVARPMRAVAIV
                     QGVLTLSAFVLLVLLFATSDMSVALVVENSHSAKPFIYKIAGTWGNHEGSMLLWVTIL
                     SIAGAALALFGRRLSERTFIAGLGSQAILALGFYAFLLIASNPFARLLNPPADGQGLN
                     PLLQDPGLAFHPPTLYLGYVGLSVAFSLAVGALLTGEVDSRLARAMRPWVLGAWILLT
                     LGITAGSYWAYYDLGWGGYWFWDPVENASLMPWLSATALLHSINVLAARGALKAWTMM
                     LAVIAFSMSMVGTFLVRSGVLTSVHAFAIDPQRGTFLLALLAIYVGAAFTLFAFRGAT
                     LKEGAPFELVSRESGLVVNNLFLSVILGIVFLGTLYPLFIEALSGEKLSVGAPYFNAA
                     VGPLALVLAILVGVGPLLSWRRERRPVLGRLKVPALLGVTALVITIILWPAMAILPRL
                     GFVAAAYLMAASLLPLIGRNPIRAPLTTWGMVVAHFGIAVALTGMAANAAFTSERLAV
                     AKPGDTLSVG"
BASE COUNT          403 a          751 c          749 g          579 t
ORIGIN      
        1 aacctggtgg gagtgggacg gtcgcctcac ctcgatgctc atccttttct tcctctacct
       61 tggatacatt gggcttgcat cggccgagcg cgagagaggc ggtgagggac gaatcacggc
      121 catctatggt cttgttggtg cgatcaatct tccgatcatc cactattccg tgctgtggtg
      181 gcgaacgctt caccagggtg aaagcatcgg gcttacaggc tcgacgatcg acagttcgat
      241 actttggcct ctccccttga cgatgatcgg tttcacctgc ctctttgccg ccgccgcact
      301 gatgcgaatg cgggcacagc tcgccgaagc caaggtcgaa gcgcgaatgc gccgaatgag
      361 cattcaatga acccttggcc gtttgttatc gcagcctata cggttgcgat ctgcctgacc
      421 gtcgccttgc tcctgtgggc gttcgtctcg atgcggcgag ccgaagccgg agcggaagcg
      481 ctaagaaatc gatgaagccg aagaaccagc gcctggtcct gctgggttct gcgatcgtcg
      541 cggtactcgt cgccgtcttg cttggcatgt ggggactgcg gaaccaggca tcttttttct
      601 atactcctgc cgatatcgtt gctggaaagg cgagggatgg tcggatcgct cgcctcggcg
      661 ggatggtcga acgtggatcg attcaaaggc aggccgacgg cgtcacgatc ctcttcgcgc
      721 tgacggacgg gaaggcgacg acgcccgtta tgtatcgggg tatcgttcca gacctcttcc
      781 gggaaggtag tggagcggtc gccgaaggga ggatgcacaa cggcacgttc gttgctgacc
      841 agatattagc gaagcacgac gagcgctata tgccaccgca gcttggaaac ctggcggcgg
      901 agcacaaggc ggggaagacg ctcgagaaat gattgccgag gcaggactag ccgcactgtg
      961 gctcgcggcc gcgcttgccg cctaccagtt tctgctgatg cttcttgctc tacgaagcga
     1021 gatcgatgtc gcgcggccga tgcgcgccgt cgcaatcgtc cagggcgtac ttacgctgtc
     1081 ggcgttcgtg ctgctggtat tgctatttgc aaccagtgac atgtcggtcg cactcgttgt
     1141 cgagaacagc catagcgcca agccctttat ctacaagatt gccggcacct gggggaacca
     1201 tgaaggatcg atgcttcttt gggtcacgat cctgtcgatc gccggcgccg cgctcgccct
     1261 ttttggtcgg cggctcagcg aacgtacatt catcgcgggg cttggaagcc aggcgatcct
     1321 cgcactcggc ttttacgcct tcctgctgat cgcgtccaac ccgtttgcac ggctgcttaa
     1381 cccgcccgcg gacgggcagg ggctaaatcc cctccttcag gacccgggcc tcgctttcca
     1441 tcccccgact ttgtaccttg gctatgtcgg cttgtcggtt gcattcagcc ttgccgtcgg
     1501 cgctcttctc accggtgaag tcgacagccg cctcgctcgc gccatgcgac cctgggtgct
     1561 tggtgcctgg attttgctta cgcttgggat aaccgctggc agctactggg catattatga
     1621 tcttggatgg ggcggatact ggttctggga ccctgtcgag aacgcgtcac tcatgccttg
     1681 gttgtcagca acggcgctgc ttcactcgat caacgtcctt gctgctcggg gagcgcttaa
     1741 ggcgtggacc atgatgcttg cagtcatcgc gttctcgatg tcgatggtcg gtacctttct
     1801 cgtccgctcg ggcgtcctca cgtcggtcca tgcgtttgcg atcgatccgc agcgcggtac
     1861 gttcctgctg gcactcctcg cgatttacgt cggcgcagcc ttcaccttgt ttgccttccg
     1921 cggcgcgacg ttgaaggaag gggcgccgtt tgaactcgtc agccgcgaaa gtggtttggt
     1981 cgtgaacaat ctgttcctca gcgtcatcct cggcatcgtg ttcctcggca cactctaccc
     2041 gcttttcatc gaggctctca gcggggagaa gctctccgtc ggcgcgccct atttcaatgc
     2101 cgccgtcggc ccgctcgccc tcgtcctcgc aatactcgtc ggtgttggac ctttgctgag
     2161 ctggagacgc gaacgtcggc cggtgctcgg acggctgaag gtgccggcgc tgcttggtgt
     2221 taccgccctt gtgatcacca tcattctctg gccagcgatg gccatcctgc cgcgcctcgg
     2281 atttgttgcg gcagcctatc tgatggccgc aagcttattg cctctcatcg gtcgcaatcc
     2341 cattcgtgca ccgctcacga cctggggcat ggtcgtcgcg cacttcggca tcgccgttgc
     2401 gcttaccggc atggcagcaa atgcagcatt tacgagtgag cggctcgctg ttgccaagcc
     2461 cggagacacg ctgagcgtcg gg
//
LOCUS       DASRBJ010000040        16750 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_359176,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000040 DASRBJ010000000
VERSION     DASRBJ010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 16750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16750
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359176"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            142..570
                     /locus_tag="VE968_01210"
     CDS             142..570
                     /locus_tag="VE968_01210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010214580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HZU50472.1"
                     /translation="MLAILLDQPVAIMAQSPVPTGKVTGIGGIFIKSSNPRALAAWYE
                     DVLGMKLEPWGGALLRYDVPGHPPQAVWNAFPMESTYFAPSTKEFMIDLAVDDMDAMI
                     ARLKAKGIAILKQDSDSTGQFAWIMDPEGTKIELWQPKRK"
     gene            complement(682..1467)
                     /locus_tag="VE968_01215"
     CDS             complement(682..1467)
                     /locus_tag="VE968_01215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010338010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HZU50473.1"
                     /translation="MFSAYNPLYSLAGFLVGMLVGMTGVGGGSLMTPILVLLFNFHPA
                     TAVGTDLLYASVTKTVGTAVHGKQGTVDWRIVAALACGSVPASVLTIFVMSQVGTLDA
                     HAAGTLNLVLGAALLLTSFSVFLRPHILSWAGHHIHALEPRELKGWTILVGFVLGVLV
                     SVTSVGAGALGTTALLILYPRLPVARIAASDIAHAVPLTLIAGIGHWLMGSVNFTLMG
                     ALLVGSIPGIVVGSLLSGRSSDAILRPVLAVTLLVVSIRMLIG"
     gene            1607..2293
                     /gene="cysE"
                     /locus_tag="VE968_01220"
     CDS             1607..2293
                     /gene="cysE"
                     /locus_tag="VE968_01220"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011414689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HZU50474.1"
                     /translation="MNSGLVAYLDSVKSRDPAARSRWDILFYPGVTALGLHRVAHWLW
                     EGHLFFLARLVNHFARFLTGIDIHPGAKIGRRFFLDHGFSVIGESAEIGDDVTIYQHV
                     TLGGTNPTTGVGGKRHPTLRNGVVVGSGAQILGPIEIGEGAKIGANSVVTKDVAAGQT
                     VVGIPAKPVPVDVVHYSPGFMPYGTPCGEDVDPVRARLVELENEIAELRRDIKMLKAT
                     KQAQPKVKSA"
     gene            2290..2631
                     /locus_tag="VE968_01225"
     CDS             2290..2631
                     /locus_tag="VE968_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2794 domain-containing protein"
                     /protein_id="HZU50475.1"
                     /translation="MSVIAPFPSAWDRRPIATFDRRELGRILDLYGRMVAAGHWRDYA
                     LRIDPEVAVFAAFRRHSERPEIRIEKRPALRHKQGAFALIGEHGAVLKRGHDLAGVLA
                     PLERRLMRLVG"
     gene            complement(2612..3718)
                     /locus_tag="VE968_01230"
     CDS             complement(2612..3718)
                     /locus_tag="VE968_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50476.1"
                     /translation="MYSQQELDDAVASGVITVEAANALRAHIERQRATAIPDEEQFRL
                     ITGFNDIFVAIASAILLFAVGWIGQSIGQSIGLAIDGDGPSFLAPLLVAGTAWGLALY
                     FTARRRMALPSILLLLAFVGGVFATALLAFILAVGADRANNNNALVGILASAAAAIAG
                     GAAWLHWRRFHVPITVAAGAAAAAGIVVGLVLAGLGQDPAHARNVILALVLVLGIGMF
                     MFAMWWDASDRTRLTRRSDVAFWLHLLAAPMIVHPIFTLLGLTSGHISVGEGLAVVLL
                     YVALGVTAVAVDRRALLVSALAYVLYALDELFREFGAVELNVALTALVIGSALLLLSA
                     FWHQARMAIVRPLPETLRDKLPVLDRSLVSQPAA"
     gene            complement(3761..4825)
                     /locus_tag="VE968_01235"
     CDS             complement(3761..4825)
                     /locus_tag="VE968_01235"
                     /inference="COORDINATES: protein motif:HMM:NF018017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ELM1/GtrOC1 family putative glycosyltransferase"
                     /protein_id="HZU50477.1"
                     /translation="MLEPTDAGEVQLKRETQVRIWALLGARPGDNDQVIALARALGLP
                     FTVKRLHYNRLHLLGPRLLGASLAALTPGSRRDVSADAAPDVTISTGHRSVPVVRWLR
                     RRAGTRSIHIGFPRVSPANFDLVVATPQYPIADHPNLLRIPIALTSAAVSYPDPNGTD
                     RDVDLPYPRRLLIVGGPTLFWKLNRQAIARTLGELVDEARSSGGAVLVTSSPRTPVVV
                     RRELASILRNAGVESLLAHPGDGCSYETLLTAADSIHVTADSVSMISDAVWTAKPVAL
                     IAVAPSAAGRLVFSIHDMLKPGTRVYPQDLRFFWRALQDMGVSDELAAPRSSTRAIVA
                     TVTSRAAALVAKRRAAVLTQ"
     gene            complement(4819..6759)
                     /gene="asnB"
                     /locus_tag="VE968_01240"
     CDS             complement(4819..6759)
                     /gene="asnB"
                     /locus_tag="VE968_01240"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013833029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HZU50478.1"
                     /translation="MCGIAGWYRRRGRRVDDHVIQAQCRRLVHRGPDDEGIHVDEDFG
                     FGMRRLSIIDLAGGHQPIFSPDRRFAIICNGEIVNHRDLRREIGSAFDFRTNSDVETL
                     LAAFVRWGDDAWLRAEGMYAAAIWDSAARTLRLARDPLGIKPLFFTEQNGGVAFGSEI
                     PALRAVPSYQFDVDEAGVDDFFTFGHVLGPRTIFSQVNALPPGHLLQVARDGPPMLRC
                     LWKARIRTIEGRSEADWIDETRERVRATVDQHMIADVPVGAFLSGGVDSGAIAAAMAR
                     SGEREIKLFTAGFPGSKIDETAAASSVARHLGCEHVVLPIEPKTAADVLPLVQSAFDE
                     PSAANSAIPLWYLSRAAAQHVKVVLCGEGGDELFLGYNRQRWAERMRRYSPYLKPLRL
                     DWLDDLPGLGSRNLNYLREYAVRFRDGAMLADGFERFFAAVAITSPQVRRHIYGQDFA
                     ARHERSPNYADRVERYFASEDKDRLSSLEQFMIGDLTVHMPASLLQRLDRSSMAHSLE
                     ARVPFLSHGFVDWALTIPTELKYRHGIGKYVLREAVKPWLPRATPNGRKLGFQMPLAD
                     WFTGGFSNFAQEAWQSSGASKAGFLDPSRVDQLFDEHRRGERNHGRLLYAIAMFSCWW
                     LEQKEVGTRAPAAHDRQAAAHC"
     gene            complement(6852..8117)
                     /locus_tag="VE968_01245"
     CDS             complement(6852..8117)
                     /locus_tag="VE968_01245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Coenzyme F420 hydrogenase/dehydrogenase, beta
                     subunit C-terminal domain"
                     /protein_id="HZU50479.1"
                     /translation="MRWDRNGFLKPISDGGRSFAQQCPFSPAAANEDEIAQANFPDSA
                     VVDERIGRFEAAYVGHVATDPFRRNGSSGGLTSWVAAELLRTGKVEGVAHVAPTNPRD
                     GSLFAYRISRSLNELSHGAKSRYYPVELSQVLHEIRATPGRYAIVGVPCFIKAVHLLR
                     RVDPLVRERVTHTLGLFCGHMKSAAMVESFAWQLGTELQQVRALDYRIKDATRPANWY
                     RAHLELDRGKAIEKDWWHLADGDWGAGFFQNPACNWCDDVVAETADIAFGDAWVEPYS
                     SDGRGTNVVIVRSKELKSMIESARADGRLELEEVDSEFIVRTQAAGLRHRRDGLAYRL
                     TWRKGKAAPRKRVPPSSALPLRRKMVYRLRYFIAKQSHPMLRLARLARMPSLYTCWAR
                     SMLRLYQSVTWSRGRLGRLVDAILPAPEV"
     gene            complement(8182..9237)
                     /locus_tag="VE968_01250"
     CDS             complement(8182..9237)
                     /locus_tag="VE968_01250"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007687232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide pyruvyl transferase family
                     protein"
                     /protein_id="HZU50480.1"
                     /translation="MKVGVLTFHKCINYGSYWQARCMVEALRARGHDAELLDHDCRCV
                     RRAEVRCALQPKLPERTPRHELPIYAHKTRRFIDAITALPLSKPFNLHQPDAGDKYDA
                     IVVGSDEVWNFRHPWYGSKPIFWGDGLKTDRLVSYAASFGNHSAWDGIHPAWAKKLGR
                     FSSISVRDQNSLHLVRNGTSREPALVVDPCLLYPEPAKMKRRSGAAYALVYGYAFPSW
                     LKTLARRWSYAAGLRLVSVGYSNDFVHEQRIGDGPAEFAQLMSGASAVITNFFHGCVF
                     SLLNGKPWVAAPSDYRSIKIPDLASTLGADHRLVDGDTDDRRFAELMTTPVQPWVEER
                     ISELRASSQSYLDSALA"
     gene            complement(9384..10904)
                     /locus_tag="VE968_01255"
     CDS             complement(9384..10904)
                     /locus_tag="VE968_01255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaF family protein"
                     /protein_id="HZU50481.1"
                     /translation="MSAFGKRSGISGARPSFGVAKPMKGGPATAVPAGGDQFPPIEEL
                     NQPAETSAVESAPRTGGIGAAMDRLTARQNASGEAASSKVEGFEASVHRIKEQVLPRL
                     LERVDPEAAATLNKDELAEEFRPIISEVLAELKITLNRREQFALEKVLVDELLGLGPL
                     EELLADPAVSDIMVNGPEQTYVERKGKLEIATIQFRDEEHLFQIAQRIVNKVGRRIDQ
                     TTPLCDARLQDGSRVNVIIPPLSLRGTAISIRKFSEKPITLDMMRGFGSMSEKMATVL
                     KIAGASRMNIVISGGTGSGKTTMLNALSKMIDPGERVITIEDAAELRLQQPHWLPLET
                     RPANLEGQGAITIRDLVINALRMRPDRIILGEIRGPECFDLLAAMNTGHDGSMATLHS
                     NSPRECLARMENMVMMSDIKVPKEAISRQIADSVNLIVQVKRLRDGSRRTTNITEVIG
                     MEGDVIVTQELFKFEYLDETADGKIIGEYRSMGLRPYTLDKAKQFGFDQPYLEACL"
     gene            complement(11041..12603)
                     /locus_tag="VE968_01260"
     CDS             complement(11041..12603)
                     /locus_tag="VE968_01260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50482.1"
                     /translation="MNNQNNWAAKLPPTPRLTPWQERPGIAYPFLFILAVILVLPSNA
                     ARPLLHDSFAIDWVWADQFTSELARGILYPRWLPNSDGGLGAPVFYYYPPLAFYVSAV
                     FGLLGLSTYASIIATFAAAFFGSGIACWHWLKGHCSQPLLGAAFFVVAPYHLLDYTVR
                     GALAESVAIGLIPVVAIGLRRIAERRGGKILTAISYGAMIGSHLPLALLVSVFLIAPT
                     ALAARRQMVHVATAAALGIALSAVYLVPALALEPFHDVGQLYRTPNLQTAYWAVYNGH
                     WSDPTFTMVMFIIVSILFAAALPALRRRDGWAQYSMAMALLVSGIIPLLWSMPLLQKV
                     QFPYRALPLAEFGLATALARLPRRELLAKLFFLLPLLLSIMIVPGFHIPGDNLARLRT
                     LHPDVYEYLPRGVMKRGQTKARLADILAARVPPPKVAGMVVEDHFYFPSWSCGEAEPR
                     TQLLIHSKTCHPRLVLTKPEKLGLFVSIVAGSFLGLMAWLASVTNPAVLAARFARIMP
                     TSSPASRAPDGA"
     gene            complement(12790..13053)
                     /locus_tag="VE968_01265"
     CDS             complement(12790..13053)
                     /locus_tag="VE968_01265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit epsilon"
                     /protein_id="HZU50483.1"
                     /translation="MADLHFELVTPERLVMSGDFYMVVVPGTEGESGIMAGHAPYMTT
                     LKNGDIAVYRTQGAQPERIQVSGGFAEVSDRGLTVLAESATAA"
     gene            complement(13242..14765)
                     /gene="atpD"
                     /locus_tag="VE968_01270"
     CDS             complement(13242..14765)
                     /gene="atpD"
                     /locus_tag="VE968_01270"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HZU50484.1"
                     /translation="MATAAETKPRSRKATATSATGSGPANVTSPSNLTGRVSQVIGAV
                     VDVAFEGELPPILSALETENQGSRLVLEVAQHLGENVVRTIAMDSTDGLTRGQVVNAT
                     GSEIRVPVGPKTLGRIMNVIGEPIDERGPIGSDMTAPIHASAPPFVDQSTEASILVTG
                     IKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGVSVFAGVGERTREGN
                     DLYHEFLEAGVIAKDADGNPTPEGSKVALVFGQMNEPPGARARVALSGLTQAEYFRDQ
                     EGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTNKGSI
                     TSVQAIYVPADDLTDPAPATSFAHLDATTTLSRAISELGIYPAVDPLDSVSRVLTPAV
                     VGQEHYETARAVQATLQKYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFHV
                     AEVFTGIPGKFVQVEDTVRSFKAVVNGEYDHLPEAAFYMVGGIEEAVAKAEKLAQES"
     gene            complement(14788..15678)
                     /locus_tag="VE968_01275"
     CDS             complement(14788..15678)
                     /locus_tag="VE968_01275"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HZU50485.1"
                     /translation="MASLKALKIRIGSVKSTQKITKALNMVAASKLRRAQQNASAARP
                     YSSRITEVVASLASRITPGPQSPRLLAGTGKDDTHLIIVVTGDRGLAGAFNTNIVRAV
                     RKRADELIGQGKTVLFYIVGRKGRPVIQRLYPNSIIAQFDTSEMKNPSYGEAQAIAKD
                     IIDRYTTDGIDVVHLAYANFRSTLVQEPTIDQIIPVTASKAEDDRASVKGSPAAVEYE
                     PDEEEILADLLPRNIAVQIYRALLENQAGFYGSQMTAMDNATRNAGDMINRLSIQYNR
                     TRQAVITTELIEIISGAEAL"
     gene            complement(15679..>16750)
                     /gene="atpA"
                     /locus_tag="VE968_01280"
     CDS             complement(15679..>16750)
                     /gene="atpA"
                     /locus_tag="VE968_01280"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HZU50486.1"
                     /translation="DALVPIGRGQRELIIGDRQTGKTAVALDTFINQKEVNKGSDESQ
                     KLYCIYVAVGQKRSTVAQIVRALEENGAMEYSIVIAATASEPAPLQYLAPYAGVAMGE
                     YFRDNGMHAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN
                     EDNGSGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFYQGIRPAINVGLSV
                     SRVGSAAQTKAMKKVAGSIKLELAQYREMAAFAQFGSDLDASTQRLLARGARLTELLK
                     QPQFAPMPVEEQVASIFAGTQGFLDNVDVKDVVRYEAAMLSFLRSEKPEILAKIRDTK
                     TLDDDTAAALKDALGQFGKQFA"
BASE COUNT         3425 a         4964 c         5187 g         3174 t
ORIGIN      
        1 gtgatgaagg caatcgcgac ggtgcacgcg acgctttagc gatcgtcaaa acctcgggtc
       61 catgtgctcg cacgcgcgac tttgtcgtgc caaggacccc atgctatcct acgatattcg
      121 agcggaattc ctggaggacc aatgctggca atccttctcg atcaaccggt agcgatcatg
      181 gcgcaatcgc ctgtcccaac tggcaaagtg acgggtattg gcggcatctt catcaagagc
      241 agcaaccccc gtgcgctcgc cgcctggtac gaggatgttc tcgggatgaa gctcgagccc
      301 tggggcggcg cgcttcttcg ctacgacgtg cccgggcatc caccgcaggc ggtgtggaac
      361 gcctttccaa tggaaagcac ctattttgct ccgtccacca aagaattcat gatcgacctt
      421 gcggtcgacg acatggatgc gatgattgca cggctcaagg cgaaaggcat tgcgatcctg
      481 aagcaggaca gcgactcgac gggccagttc gcctggatca tggatccgga gggaaccaag
      541 atcgaacttt ggcagcccaa gcgcaaatag cgcgcgttcg ccatcgtccg atctgcgcga
      601 gcgtatgcgg atgatgagac gacgggacga gcttcgatga tcggcaaggg ccggcctcgc
      661 gacaaacccc aggtttcgcg atcagccgat cagcattcgg attgatacaa cgagcagagt
      721 taccgcgagg accggtcgca agatggcgtc cgacgatcgg ccgctaagga ggcttccaac
      781 gacgattccc ggaattgatc cgacaagtag agcgcccatc agcgtgaaat tgacagaacc
      841 catcaaccag tgaccgatgc cagcgatcaa cgtcagtgga accgcgtgcg cgatgtcgct
      901 cgcagcaatg cgcgctaccg gtaacctcgg atagaggatc aggagtgctg ttgtgccaag
      961 ggctccggca ccgaccgagg tcaccgacac gagcacgccc aagacgaagc ctacgaggat
     1021 cgtccaaccc tttagctcgc gcggctcgag tgcatggatg tgatgacctg cccagctcag
     1081 gatgtggggc cgcagaaata cggaaaagct cgtaagcaat agcgcggcac ccagaacgag
     1141 gttcagagtc cctgccgcat gcgcatcgag cgttccgacc tggctcatta cgaaaatcgt
     1201 caggacggat gctggaacgc ttccgcatgc gagcgcagcg acgatccgcc agtcgaccgt
     1261 tccctgcttg ccatggacag cagtaccgac cgtctttgtt accgaagcgt agaggaggtc
     1321 cgtgccaacc gccgtcgcgg gatggaagtt gaacaataag acgagaatgg gcgtcatcag
     1381 cgagccgccg ccgacaccgg tcattccgac cagcatgcca acgaggaagc ccgcaagcga
     1441 gtagagcgga ttataggcag aaaagattag aaaccccctc gagtaagcag cctaggcgtc
     1501 aaaatcatgg ctttggcatc ctgttccaag acgtcgttag cagtcacgct ggaatttact
     1561 gcgccgcgca cttagattgg agtttggaag gaaggaagaa gctagcttga actcgggcct
     1621 ggtcgcttac ctagattcgg tcaaatcacg cgacccagcc gcacgttcgc gctgggatat
     1681 ccttttctat cccggagtca cggctcttgg tctccaccgc gttgctcact ggctttggga
     1741 agggcatctt ttttttctgg ctcggctcgt caatcacttc gcacgcttcc ttacggggat
     1801 cgacattcat cccggagcga agatcgggag gcgcttcttc ctcgatcacg gcttcagcgt
     1861 cattggcgaa agcgccgaaa tcggtgacga cgtcaccatc tatcaacatg ttacgctcgg
     1921 tggcacaaac ccgacgactg gtgtcggagg caagcgacac ccaactcttc gcaatggcgt
     1981 agtggtcggt tcaggggccc agatactggg gcccatcgag atcggcgaag gtgcgaagat
     2041 cggtgcgaat tccgtcgtga cgaaggacgt tgccgccggg cagaccgttg tcgggattcc
     2101 agccaagcca gtcccggtcg acgtcgttca ttatagcccc gggttcatgc cgtatggcac
     2161 gccttgtggc gaggacgtcg atccggtgcg cgctcgcctc gtcgagcttg aaaacgaaat
     2221 cgcggagctt cgccgcgaca tcaagatgct caaggccacc aagcaggccc agccgaaggt
     2281 caagagcgct tgagcgtcat cgcgccgttc ccgagtgcct gggaccggcg cccaatcgcc
     2341 acgttcgatc gcagggaact cggccggatt ctcgatctct atggccgaat ggtcgctgca
     2401 ggccattggc gcgattacgc gcttaggatc gatcccgaag tcgccgtgtt cgcagcgttc
     2461 cggcgccaca gtgaacgccc ggagataagg atcgaaaagc ggcccgcgct acgtcacaag
     2521 cagggcgcgt ttgcgcttat tggcgagcat ggagcagtgt tgaagcgtgg acacgacctt
     2581 gccggcgtgc tcgccccgct cgagcggcgc ctcatgcggc tggttggctg acgagcgagc
     2641 ggtcgagcac cggcaacttg tctcgcaaag tctcgggaag cggccgaacg atggccatcc
     2701 gagcctggtg ccagaacgcc gacaacagca gcaacgcgga cccaataacg agagcggtga
     2761 gggcgacgtt gagctcgaca gcaccaaatt cgcggaacag ctcatcaagc gcataaagaa
     2821 cataggcaag cgccgaaacg agcaatgctc gccggtcgac ggcaaccgcc gtgacgccga
     2881 gagcgacgta aagcaggacc accgcaagcc cttcaccgac gctgatgtgc ccgctggtga
     2941 gaccgagaag cgtgaaaatg gggtgcacga tcatcggtgc agcgagcagg tgcagccaga
     3001 aagcaacatc ggaccggcgc gtgagccgcg ttcggtctga cgcatcccac cacatggcga
     3061 acatgaacat gccgatgcca aggaccagca cgagagcgag gatcacgttc ctcgcgtgag
     3121 ccggatcttg cccaaggcca gcaagcacga gcccgacgac gattccagcc gccgctgcag
     3181 cgccagcggc gaccgtgatc ggcacatgga aacgacgcca gtgaagccac gcagcgccac
     3241 ccgcgatcgc cgcggctgcg gacgcaagta tcccaacgag ggcgttgttg ttgttcgcgc
     3301 gatcggcgcc cacggcaagg atgaatgcca agagagcagt cgcgaacacc ccgccgacga
     3361 atgcaaggag aaggaggata gaggggagcg ccatccggcg cctcgcggtg aaatagagcg
     3421 ccaatcccca tgccgttcca gcaaccagaa gcggagcaag gaacgatgga ccgtcaccat
     3481 caatcgcaag accgatcgat tggccgatac tctggccgat ccagccgacc gcgaacaaca
     3541 ggatggccga agcgattgca acgaagatgt cattgaagcc ggtaatcagc cggaactgct
     3601 cttcatcggg tattgctgtt gcgcgctgac gctcgatgtg ggcacgcagg gcatttgctg
     3661 cctcgacggt aatcacgccc gacgccaccg cgtcgtccag ctcttgctga ctatacatcg
     3721 cagctctcct gttagcgcgc tgacaataat gataactgta ttattgtgtc aatacagcag
     3781 cgcgcctttt tgcgaccaga gccgctgccc ggcttgtaac tgtcgcaaca atcgcgcgcg
     3841 tcgagcttcg aggagccgcg agctcatcgc tcacccccat gtcctgaaga gcgcgccaga
     3901 agaagcgcaa gtcctgggga tagacacgcg ttccaggctt gagcatgtcg tgaatgctaa
     3961 ataccagccg tccggccgcc gacggcgcga ccgcgatgag ggcgacgggc ttggcggtcc
     4021 agaccgcgtc cgaaatcatc gacacgctgt cggccgtcac atgaatggaa tcggccgccg
     4081 tcagcagagt ttcgtaggaa cagccatcgc ccggatgggc caataggctt tcgacgccgg
     4141 cgttgcgcag aattgatgca agttccctac gtaccacaac aggagttcgc gggcttgaag
     4201 taacgagaac tgccccccca ctcgagcgtg cttcgtcgac caactcgcca agcgttcgcg
     4261 caattgcctg ccgattgagc ttccagaaca aggttggtcc gccgacgatc agcaaacgtc
     4321 tcggataagg caagtcgaca tcgcgatcgg tgccgttcgg atctgggtac gaaaccgcag
     4381 cgctcgttag agcgatggga attcgcagaa ggtttgggtg gtcggcgata ggatattgcg
     4441 gggtcgctac gacaagatcg aagtttgcgg gcgaaaccct gggaaatccg atgtggatcg
     4501 agcgcgttcc cgcgcggcgg cgcagccaac ggacgaccgg tacgctccgg tgtcccgtgg
     4561 agatagtaac gtccggcgcg gcgtccgccg agacgtcacg tcgagagccc ggcgtgagcg
     4621 cggcgaggct tgcgccaaga aggcgcggtc caagaaggtg aaggcggttg taatgcagac
     4681 gcttgacagt gaacggcaag ccaagcgccc gcgcgagtgc gattacctgg tcattgtcgc
     4741 cgggacgtgc accaaggagc gcccagatcc gaacctgcgt ctcgcgcttc agttgcactt
     4801 ctcctgcatc ggtcggctct agcaatgagc agcagcctgg cgatcatgcg cggccggcgc
     4861 tcgcgtcccg acttctttct gctcgagcca ccagcagctg aacatcgcga tcgcataaag
     4921 cagccgccca tggtttctct caccgcggcg atgctcgtcg aacaattgat caacccgcga
     4981 tggatcaaga aaccctgctt tcgacgcacc ggacgattgc cacgcttctt gggcgaaatt
     5041 gctgaatccg cccgtgaacc agtccgccag aggcatctgg aagccgagtt tgcggccgtt
     5101 gggcgtcgct cgcgggagcc agggcttcac cgcttcgcgc aagacatatt tgccgatgcc
     5161 atggcggtac ttgagctcgg ttggaatcgt cagcgcccaa tccacgaagc catgcgagag
     5221 gaagggcact cgtgcctcaa gcgaatgggc catcgacgac cggtccagtc gctgaagaag
     5281 ggaggcaggc atgtgaaccg tgaggtcgcc aatcatgaac tgttcgagcg acgaaagccg
     5341 atccttgtct tccgatgcga aatagcgctc gacgcggtcg gcatagttcg gcgagcgttc
     5401 gtgccgcgcg gcgaaatcct gcccatagat gtgacgtcgg acttggggtg atgtgattgc
     5461 gaccgcagca aagaagcgct cgaaaccgtc cgccagcatt gcgccgtcgc gaaagcgcac
     5521 ggcatattct cgaagataat tgagattgcg cgagccaagg ccagggagat cgtcgagcca
     5581 gtcaagacga agtggcttta gataaggcga atagcgccgc atccgttcgg cccagcgctg
     5641 gcgattgtag ccaagaaaca gctcgtcgcc tccttcgccg cacaagacga ctttgacgtg
     5701 ctgcgccgcg gcgcgcgaga gataccagag cggtattgcc gaattggcgg cagagggctc
     5761 gtcgaacgcg ctttgcacaa gcgggagcac gtcggccgcg gttttcggtt caatggggag
     5821 gaccacatgt tcgcagccga gatgccgcgc aacggagctc gctgccgcgg tctcgtcgat
     5881 cttcgagccc ggaaaccccg cggtgaaaag cttgatttcg cgttcacccg agcgcgccat
     5941 cgcggccgca attgcgccag aatcaacgcc gcccgacagg aaggccccga ccggcacatc
     6001 agcgatcatg tgctggtcga cggtcgcgcg tactcgctcg cgcgtttcat cgatccagtc
     6061 ggcctcgctc cgaccttcga tggtgcgaat tcgtgccttc cacaggcagc ggagcatcgg
     6121 tggaccatct cgtgccactt gaagcaggtg ccccggcgga agcgcattca cctggctgaa
     6181 gatggtgcgg ggaccaagga catggccgaa cgtgaaaaag tcatcgacac cggcctcgtc
     6241 gacatcgaac tgatagctcg gaaccgcgcg taatgctggt atttccgacc cgaaggcgac
     6301 gccaccgttc tgctcggtga aaaaaagcgg tttgatcccg agcgggtctc tcgcgaggcg
     6361 cagcgttcgt gccgccgaat cccagattgc cgctgcgtac attccctcgg cacggagcca
     6421 cgcgtcatcg ccccagcgaa caaacgcagc caggagcgtt tcgacatcac tgttggtccg
     6481 aaaatcgaag gcgctgccga tttcgcgacg aagatcgcga tgatttacaa tctcaccatt
     6541 gcagatgatc gcaaatcgcc gatcagggct gaagatcggt tggtgtccgc cggcgaggtc
     6601 aatgatgctg aggcggcgca tcccaaaacc aaagtcctcg tcgacatgga tgccctcgtc
     6661 gtctggtccg cgatgaacga ggcgtcggca ctgtgcctgg atgacatgat catcgacgcg
     6721 gcgtccgcgc ctcctgtacc aaccagctat tccgcacatt tcgtagcgat tgcctttgcg
     6781 ttagtggccg catcgcgcgt gcgaagcgcc tttcagcgcc aaataggcac tttgccgagg
     6841 gacgactact gttagacttc cggcgctgga aggatggcat cgaccagccg gccgaggcgt
     6901 ccgcgagacc aggtgacgga ctggtaaagc ctcagcatgg agcgcgccca acaagtataa
     6961 agtgacggca tccgcgcgag ccgagccagc cggagcatcg ggtggctctg cttggcaatg
     7021 aagtagcgaa ggcgatagac catctttcgt cgcaacggca acgcggaaga aggcggcacg
     7081 cgttttcgtg gagcggcttt ccctttgcgc caggtcagcc ggtaagcgag tccgtcgcgc
     7141 cggtgccgaa gaccggcagc ctgggttcgg acgatgaact ctgaatcaac ttcctcaagc
     7201 tcgaggcggc cgtccgcgcg cgcggactca atcatggatt taagctcctt tgatcttacg
     7261 atcaccacgt tcgtgccgcg accgtcggac gaataaggtt cgacccaggc atccccgaac
     7321 gcgatgtccg ctgtttcggc gactacgtca tcacaccagt tgcaggccgg gttctggaag
     7381 aagccggcgc cccagtcacc gtcggcgaga tgccaccagt ccttctcgat cgccttgccg
     7441 cgatcgagct cgagatgggc ccgataccag ttggccgggc gggtcgcgtc cttgattcgg
     7501 taatcgagtg cccgcacctg ttgcagctct gttccaagtt gccaggcgaa gctctcgacc
     7561 atcgcggcgc ttttcatgtg cccgcaaaag agtcccagcg tgtgcgtgac gcgctcgcgg
     7621 actaacgggt ccacgcgacg aagaagatga acggccttga tgaaacaggg cacgccgacg
     7681 atcgcgtagc gcccgggcgt tgcgcgtatc tcgtggagaa cttgcgagag ttccacggga
     7741 tagtagcgcg acttggcgcc atggctaagc tcgttgagcg aacgcgagat tcggtaggcg
     7801 aacagacttc cgtcgcgggg gtttgtgggt gcgacatgcg ctactccctc gaccttgcca
     7861 gttcgcagca gttcagcggc aacccagctc gtgagaccgc cggaactccc gtttcgccgg
     7921 aacggatcgg tcgccacatg tccgacatag gctgcttcga agcggccgat cctttcatcc
     7981 acgacggcgc tgtcggggaa attcgcttgg gcaatctcgt cttcgttggc agctgcgggt
     8041 gaaaacggac attgctgcgc gaaggaccta cccccatcgc ttatcggctt taggaagccg
     8101 ttcctgtccc agcgcattcg ctcggcacag ctgccgcatc cgacgcaaag gcccgcccgc
     8161 gccatttgcg ctggattgag atcaggcaag cgccgaatcc agatagcttt gggaacttgc
     8221 ccgaagctcg ctgatccttt cctcgaccca aggttgcacg ggcgtcgtca tcagttcggc
     8281 gaatcgccgg tcgtcggtgt cgccgtccac gagcctgtgg tcagcgccga gggttgacgc
     8341 gagatcgggg atcttgattg agcgatagtc gcttggcgcg gctacccagg gcttgccgtt
     8401 caagaggctg aagacgcagc cgtggaagaa attggtgatc accgcacttg ccccggacat
     8461 gagctgcgcg aattccgcgg gaccatcgcc gatacgctgc tcgtgaacga agtcgttcga
     8521 atagccgaca ctcaccagcc tcaagccagc agcataggac cagcggcgcg caagcgtctt
     8581 tagccagctt gggaacgcat atccgtagac gagcgcatag gccgctcccg atcttcgctt
     8641 catctttgcg ggctccggat aaagaaggca gggatcgacc acgagcgcgg gctcgcgtga
     8701 tgtgccgttt cgaacgaggt gcagactatt ctgatcgcgg acggaaatcg atgagaagcg
     8761 cccgagcttt ttcgcccagg cggggtggat gccatcccag gcgctgtgat ttccaaagct
     8821 agcagcatag gaaacgagac gatcggtttt caatccgtcg ccccagaaga tcggtttgct
     8881 gccgtaccag ggatgtcgga agttccacac ctcgtcgctt ccaacgacga tcgcatcata
     8941 cttgtcgccg gcgtcgggtt gatggaggtt gaacggcttg gacagcggca aggccgtaat
     9001 tgcgtcgatg aatcgccggg tcttgtgcgc gtaaatcggc aactcgtgtc gcggtgttcg
     9061 ctcggggagc ttgggctgca gcgcgcagcg cacctcggcc cggcgcacgc accggcaatc
     9121 atgatcaagc agctcggcat catgcccgcg cgcgcgaagc gcttcgacca tgcagcgcgc
     9181 ctgccagtat gagccgtagt tgatgcactt gtgaaaggtg agaacgccga ctttcatggg
     9241 cgtaacaatc ggccttccat ggccgttgtt ccggagcttg atgagggtta acggatatcg
     9301 gtcgccgtca tcggactatc ttcacaagga gacgggtcgg tcagcgttga acggctcgct
     9361 gactgaggac cgggagctcg aaactagagg caggcttcga gatagggctg gtcgaagccg
     9421 aactgcttgg ccttgtcgag cgtgtagggc cgaaggccca tcgagcgata ttcgccgatg
     9481 atcttgccgt ccgccgtttc atcgagatat tcgaacttga acagttcctg cgtgacgatg
     9541 acgtcacctt ccatgccgat cacttcggtg atgttggtcg tccgacgtga gccgtcgcgc
     9601 agacgcttga cctgcacgat gaggttcacc gagtcggcaa tctgccggct gatggcctct
     9661 ttcgggacct tgatgtccga catcatcacc atgttctcca tacgtgcaag gcactcgcgc
     9721 ggagagttcg agtgaagggt cgccatcgag ccgtcgtggc cagtattcat tgccgccaga
     9781 agatcgaagc attctggacc tcgaatttcg cccaggatga tgcggtcggg gcgcatacga
     9841 agagcgttaa tgacgaggtc gcgaatggtt atggcgcctt ggccttcaag gttcgcgggg
     9901 cgagtctcga gcggaagcca gtgcggttgc tgcaggcgaa gctcggcagc gtcctcgatc
     9961 gtgatcacgc gctcgccggg atcaatcatc tttgagagcg cattaagcat cgtcgtcttg
    10021 cccgaaccgg tgccgcccga gatcacgatg ttcatgcggc tcgcgccggc gatcttgagc
    10081 acggtggcca tcttctcgga catcgaacca aagccgcgca tcatgtcgag cgtgatcggc
    10141 ttctcggaaa acttacgaat tgaaatggcg gtgccgcgaa gcgatagcgg cggaatgatg
    10201 acgttgacgc ggcttccgtc ctgcagtcgc gcgtcgcaca agggtgttgt ctggtcgata
    10261 cggcgaccga ctttgttcac gatgcgctga gcgatctgga acagatgttc ttcgtcacga
    10321 aactggatgg tggcgatctc gagcttgccc ttgcgctcga cgtaggtttg ctcgggacca
    10381 ttcaccatga tgtcgctgac tgccgggtcg gcaagcagct cttcgagcgg acctagtccg
    10441 agaagctcgt cgacgagtac cttctcaagg gcaaactgtt cgcgccgatt gagggtgatc
    10501 ttgagctctg cgagaacctc ggagatgatc ggccggaatt cctcggcaag ctcatccttg
    10561 ttgagtgtcg ccgcggcctc cggatcgacc cgctcaagca ggcgcggaag aacttgttcc
    10621 ttgatgcggt ggaccgaagc ctcaaagcct tcgaccttgc tgcttgctgc ttcgccgcta
    10681 gcgttctggc gcgcggtcag gcggtccatt gccgcgccga tgccgcccgt tcgcggcgcg
    10741 ctttcgacgg cacttgtctc cgcaggttgg ttcagctcct cgatcggcgg aaattgatcg
    10801 ccgcccgccg gcactgcggt agctggacca cccttcattg gcttggccac gccgaaactc
    10861 ggccgtgcac cactgatgcc actgcgcttc ccgaatgcac tcatgccggt attgtcaccc
    10921 gctaatctgg aatttccgcc ggaggattaa caacagatgc ctaaagaaag actaaccttc
    10981 ccgctgtcct gctaggctgc cgccaataca ccaccgcgga aacgatcggt gagcagtcgc
    11041 ttaggcgccg tcgggagcgc gtgacgcggg cgaagatgtt ggcatgatcc gcgcaaaacg
    11101 tgcggcgagc actgccgggt tcgtgaccga agcgagccac gccattaatc ccaagaacga
    11161 tcccgcgacg attgagacga agagtccaag cttctccggt ttcgttaaga cgaggcgcgg
    11221 atggcacgtt ttgctatgaa tgagcagctg cgttcgtggc tccgcctcgc cgcacgacca
    11281 cgagggaaaa tagaaatgat cctcgaccac catcccggcg accttcggcg gcggaacacg
    11341 ggccgcgaga atatcggcta gtctggcttt cgtctggccc cgtttcatga cgccgcgcgg
    11401 caaatattca tagacgtccg gatggagcgt ccgaaggcgc gcgagattat cgccgggaat
    11461 gtgaaaacca gggacgatca ttatcgacag aaggagcggc aataggaaga acagcttcgc
    11521 gaggagctcc cgccgcggaa gccttgcaag tgcggtagcg agtccaaact cggcaagtgg
    11581 tagtgcgcga tagggaaact gaaccttttg aagcagcggc attgaccaca gcaacggtat
    11641 gatgcccgag accagcaagg ccatggccat cgaatactgc gcccagccat ctcggcgccg
    11701 aagggccggc aaggctgcgg caaacaggat cgagacaatg atgaacatca ccattgtgaa
    11761 cgtcggatcc gaccaatggc cgttgtaaac cgcccaataa gcggtctgga gattgggggt
    11821 acggtagagt tgacccacgt cgtggaatgg ctccagagcg agggcgggaa cgaggtaaac
    11881 ggcggagagt gcgattccga gcgccgcggc cgtcgcaacg tgtaccatct gccggcgtgc
    11941 cgcgagagcc gtcggtgcaa tcaggaacac gctcacaaga agagccaggg gcaaatggct
    12001 gccgatcatt gcaccgtagc taatcgcggt cagtattttg ccgccccgcc gctcggcgat
    12061 ccggcgaagg ccgatcgcga cgacgggaat caacccaatc gccaccgatt cagcaagcgc
    12121 tccccggacc gtgtaatcga gaaggtggta aggagcgaca acgaagaaag ccgcgcccag
    12181 cagcggctgg ctgcagtgtc ctttcaacca gtgccaacag gcaattcccg atccgaaaaa
    12241 tgccgcggcg aacgttgcga tgatgctcgc gtaggttgat aagccgagca gtccgaaaac
    12301 agccgacacg taaaaggcga gcggaggata atagtagaag accggcgctc caagtccgcc
    12361 atccgaattg ggtagccacc tcggataaag gattccgcgg gcaagctcgg aagtgaactg
    12421 atcggcccaa acccagtcaa tcgcgaagct gtcatgaagc agtggtcgcg cggcattgct
    12481 cggcaggacg agaatgacgg cgaggatgaa caggaacgga taggctattc ctgggcgctc
    12541 ctgccaaggt gtaagacgtg gcgttggcgg aagcttggct gcccaattgt tttggttgtt
    12601 catgtggcgc gtgcgtagcg gaagatggtt aactaaccgc ctccgatgag tggctgagct
    12661 catccggaga cctttgcgcc atgggtgcat cgcggtcgaa cgacgctcgc gcggctttgc
    12721 cttcggcagg agaaattggg cgtcggaggt ttaacgagac gcgatgttgc gcgccatttg
    12781 gacactagct caagcggcgg ttgcgctctc ggcgagcacg gtcaagccgc ggtcacttac
    12841 ctccgcgaaa cctccgctta cctgaattcg ctcgggctgc gccccttggg tgcggtaaac
    12901 cgcgatgtca ccgttcttaa gcgtagtcat gtagggcgcg tggccggcca tgataccgct
    12961 ttcgccctcg gttcccggca cgacaaccat gtagaagtcg cccgacatca caagccgctc
    13021 gggagtcacg agctcgaaat ggaggtccgc cattacttct cacctttgat tgcttgctcg
    13081 aacgcgcgga ttgcgcgctc gaacttgtca cgacatccga cattgcagaa gccgacgacc
    13141 ttgccgcgat aaagcgccag gctgtccgcc tggaccggct tgccggacca gggacagacg
    13201 tcgttgacgc agtcttcgag gcgaagttcg ccggccagtg ctcaggattc ctgcgccagc
    13261 ttctcagcct tggcgactgc ctcttcaatg ccgccgacca tgtagaaggc cgcttccgga
    13321 aggtgatcat actcgccgtt caccacagcc ttgaacgagc gcaccgtgtc ttccacttgc
    13381 acgaacttgc ccgggatccc ggtgaacact tcggcgacat ggaacggctg cgacaagaaa
    13441 cgctggatct tgcgcgcccg gctgacggtc agcttatcct cttcgctgag ttcgtccatg
    13501 ccgaggatgg caatgatgtc ctgcagcgac ttgtacttct gcaaagtggc ctggaccgcg
    13561 cgcgcggtct cgtaatgctc ttggccgacg accgcaggcg taaggactcg gctgaccgag
    13621 tccagtggat cgacggcggg gtagatcccg agttcagaaa tcgcgcggct gagggtcgtc
    13681 gttgcgtcaa ggtgagcgaa cgaggtcgct ggcgcagggt cggtcaaatc gtcggcgggg
    13741 acgtaaatcg cctgcacgga cgtgatcgag cccttgttgg tcgaagtgat tcgctcctgc
    13801 agggcgccca tgtcggtggc aagcgttggc tggtagccga ccgctgaggg gattcggccg
    13861 agcagcgccg acacttctga gccggcctgt gtaaagcgga aaatgttgtc gacgaagaag
    13921 agcacgtcct ggccttcctg gtcgcggaaa tattctgcct gggtaagacc cgacaaggcg
    13981 acgcgggcgc gtgctcccgg tggttcgttc atctgcccga acaccagcgc gacctttgag
    14041 ccctcgggcg tcgggttgcc gtcggcatcc ttggcaatga cgccggcttc gagaaactcg
    14101 tgataaaggt cattgccttc acgcgtgcgc tcaccgacgc cggcgaacac cgacacgccg
    14161 ccatgaccct tggcgatgtt gttgatgagc tcctgaataa gaacggtctt gccgactccg
    14221 gcgccgccaa acaggccaat ctttccaccc ttggcgtaag gggcgaggag gtcgatgacc
    14281 ttgatcccgg tgacgaggat cgacgcttcc gtcgactgat cgacgaaggg gggcgccgaa
    14341 gcgtgtatcg gtgccgtcat gtcgctgccg atggggccgc gttcgtcaat cggttcgccg
    14401 atgacgttca tgatacgtcc gagagtcttg ggaccaaccg gaacccggat ttcggaaccg
    14461 gtggcattca cgacctgtcc gcgagtgaga ccgtcggtcg agtccatcgc gattgttcga
    14521 accacatttt cacccagatg ctgcgcgacc tcgagcacca gccggctgcc ctggttctcc
    14581 gtctcgagcg ctgaaaggat cggtggcagc tcgccttcga aagcgacgtc gacgacggcg
    14641 ccgatcacct ggctcactcg gccggtgagg ttgcttgggg aagtgacgtt cgcgggaccg
    14701 gagccggtcg cactggttgc tgtcgccttg cggctgcgtg gcttcgtttc ggcggcggtt
    14761 gccatgttct cgttccttgc tgtctgctta gagcgcttcg gcgcccgaga tgatttcaat
    14821 gagctcggtg gtgatcacgg cctggcgtgt ccggttgtac tggatcgaca gtcggttgat
    14881 catatcgccg gcatttctcg tcgcattgtc catcgcggtc atctgcgagc catagaagcc
    14941 ggcctgattc tcaaggagag cgcggtagat ctggaccgca atgttgcgcg gcagcaggtc
    15001 ggcgaggatt tcctcctcgt ccggctcgta ttcgaccgca gccggtgagc ctttgacgct
    15061 cgcgcgatcg tcctcggcct tgcttgcggt gaccgggatg atctggtcga tcgtcggctc
    15121 ctgcacgagt gtcgagcgga agttcgcata ggcgaggtgg acgacatcga tcccgtccgt
    15181 cgtgtagcga tcgatgatgt ccttggcgat cgcctgcgcc tctccatagg aggggttctt
    15241 catctcgctc gtatcgaact gcgcgatgat cgagttggga tagaggcgct ggatcaccgg
    15301 acgacccttg cgcccgacga tgtagaacag cacggtcttc ccttggccga taagctcgtc
    15361 tgctctcttg cgcacggcgc ggacaatgtt cgtgttgaac gctccggcaa gaccgcggtc
    15421 gcccgtcacg acgatgatga ggtgggtgtc gtccttgccc gtgcccgcaa gcagtcgcgg
    15481 gctctgtgga ccgggcgtga tgcgcgacgc gagcgacgca acgacctcgg ttattcgtga
    15541 cgaatatggc cgcgcggcgc tcgcgttctg ctgcgcacga cgcagcttcg aggcggccac
    15601 catgttgagc gccttggtga tcttctgcgt cgactttacc gagccaatgc ggatcttcag
    15661 ggccttgagc gatgccattt aggcgaactg cttcccaaac tggccgagcg cgtccttgag
    15721 cgccgcggcg gtatcgtcat cgagcgtctt ggtgtcgcga attttcgcga ggatttcggg
    15781 cttctctgaa cgcaggaagc tcagcattgc ggcctcgtag cgaacgacgt ccttcacatc
    15841 gacattgtcg agaaagccct gcgttcccgc gaagatcgaa gcgacctgct cttcaaccgg
    15901 catcggagcg aactgaggct gcttcagaag ctccgtaagc cgagcgccgc gcgcaagaag
    15961 tcgctgcgtc gaggcatcga gatcggagcc gaactgggcg aaagccgcca tttcgcgata
    16021 ttgagcaagc tcgagtttga tcgaacccgc caccttcttc atcgccttgg tctgcgcggc
    16081 cgagccgacg cgactgaccg aaagaccaac gttaattgcg ggccggatcc cctggtagaa
    16141 aaggtccgtc tcgagaaaga tctggccgtc cgtgatcgag atcacgttgg tcgggatata
    16201 cgccgacacg tcgccggcct gcgtttcgat gatcggaagt gcagtgagag acccgctgcc
    16261 attgtcctcg ttcatcttcg cggcacgctc gagaaggcgg ctgtgaagat agaaaacgtc
    16321 cccgggataa gcttcacggc cagggggacg acggaggaga agggacatct gacggtacgc
    16381 gaccgcctgc ttggagagat cgtcatagac gatcacggca tgcatgccgt tgtcgcggaa
    16441 atattcgccc atcgcgacac cagcataagg tgcaagatac tgaagcggcg ctggctcgga
    16501 ggccgtcgcg gcaatcacga tggaatattc catcgcgcca ttttcctcga gcgcgcgcac
    16561 gatctgcgcg acggtcgacc gcttctgacc gacggcaaca tagatgcagt agagtttctg
    16621 gctctcgtcg ctgcccttgt taacttcctt ctggttgatg aaggtatcga gcgcaacggc
    16681 agtcttgccg gtctgacggt caccaatgat gagctcgcgc tgcccgcggc cgatcggtac
    16741 cagcgcatca
//
LOCUS       DASRBJ010000041         5545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_309047,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000041 DASRBJ010000000
VERSION     DASRBJ010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5545
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309047"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..297)
                     /locus_tag="VE968_01285"
     CDS             complement(<1..297)
                     /locus_tag="VE968_01285"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
                     /protein_id="HZU50487.1"
                     /translation="MTGTASFLFDLDGTLVDSVYNHVRAWHLALKEEGLDLSVWRIHR
                     KIGMSGGLFTAQLQRELGRTIDNAMTQRLRDRHAELFREISKDVPPLPAAVRLLQ"
     gene            361..2490
                     /locus_tag="VE968_01290"
     CDS             361..2490
                     /locus_tag="VE968_01290"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HZU50488.1"
                     /translation="MLVHGRANDWSSGVEGIRRILRSGGSSGQEDLRPQTSRAEGLIQ
                     EFESSEKGWFWETGRDGSLTYISESVASALGRETGDLLERPFTDLISTDSADGSATSE
                     RTLGFYLSSHVAFQDLIVRAKTKNEIWWSISGRPVHDEIGRFFGFRGFASDLTKMRQS
                     EVELDRLARQDALTGLANRQALRRALDDALVSAVRRKHRCSMFLLDLDRFKAVNDTLG
                     HPAGDTLLRLVALRLRDVIGEAGQVGRLGGDEFEVVLPTTSDKTELSKLAQGIIDSLS
                     RPYTINGTAVSIGASVGIVTSDYDDRTSDDLMRDADLALYAAKAAGKGCYRFFAAEMH
                     EAARERQLMESDLRVALEKGQLRLVYQPCINALSEAVTGFEALIRWDHPEHGPVSPAQ
                     FIPLAEEIGLINDIGEWVLRTACAEAAKWPQNISVAVNLSPVQFKSHALPTMVRTVLA
                     ETEFPAKRLELEITEGVFLNNDEHVHEMIQSLKAIGLKLALDDFGTGYSSLSYLQRVP
                     FDKIKIDQSFVRGACDPQSRNAALIRAMVGLASDLQMQTTAEGVETQEELELIRNLGC
                     SLIQGYIFGKPMQPDDARELASKGAVDKPEAPFPPREPRMRIIRAALLHYNGQVKGAR
                     LRNISSGGALVECREELPVGARVQLDFAAGGLIEAEVRWTKGTQFGCQFTEKFNLKLL
                     QPTKPISSKPPVMTPTYLTATDSAEGK"
     gene            complement(2544..4523)
                     /gene="parE"
                     /locus_tag="VE968_01295"
     CDS             complement(2544..4523)
                     /gene="parE"
                     /locus_tag="VE968_01295"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010337732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009340 - DNA topoisomerase IV complex
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HZU50489.1"
                     /translation="MSDLFSSSASPASNSYDASAIEVLEGLEPVRRRPGMYIGGTDER
                     ALHHLAAEVIDNSMDEAVAGFATRIEVELGRGNRLTVSDNGRGIPVDPHPKYPGKSAL
                     EVIMTTLHSGGKFEGKAYSTSGGLHGVGVSVVNALSTETIVEVARDRTLYRQAFARGI
                     AISHLETVGAAPNRRGTTVSFTPDPEIFGEGSNFSPERLYKLARSKAYLFAGVEIRWR
                     CDATLSSKDVPEQAVFQFPGGLADHLAEQLSDRPTVTNQPFTGRQDFPNDQGSAEWAV
                     AWPLYSEGSQSYYCNTIPTPDGGTHEAGLRAALTKGIRAFGELVGNKKAKDITADDMF
                     NGIELMLSVFIRNPHFQSQTKDRLTSLEAARFVEAAVRDHFDHYLADNMDRGRALLGS
                     IIERMEERLRRRAEREVLRKTATSARKLRLPGKLTDCSSDDPEGTELFIVEGDSAGGS
                     AKQARDRKTQAILPIRGKILNVASASADKIRANSEIGDLLLALGCGTRDKFNEEALRY
                     ERIIIMTDADVDGAHIATLLMTFFFQEMPELVRRGHLFLAQPPLYRLTAGAKTLYARD
                     DAHRAELEASEFKGKKVEVSRFKGLGEMNPSQLKETTMDAATRSLLKVTLPSAYEDRQ
                     PIKDLVERLMGRNPEHRFEFIQSRASALDEEEIDA"
     gene            4738..5244
                     /locus_tag="VE968_01300"
     CDS             4738..5244
                     /locus_tag="VE968_01300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20 family protein"
                     /protein_id="HZU50490.1"
                     /translation="MRSAFDFSPFRRSTVGFDRLFDMLENSNLGQSQENYPPFDLIRK
                     GDNDFCIQLAVAGFKPDEIDITAQQNVLIVSGRKNDENEQKNGDFIYRGIANRSFERR
                     FALADHIQVKGADLKDGLLAIELVREIPEAMKPRKINISGSESAHRSEIGGQAASKQT
                     VDVAAEHA"
BASE COUNT         1129 a         1580 c         1685 g         1151 t
ORIGIN      
        1 ctgcagcagc cgaacggcag caggaagggg cggaacatct ttggagatct cgcgaaacag
       61 ctcggcgtgc cgatcacgga ggcgctgagt catagcattg tctatcgttc ggccaagctc
      121 acgctggagc tgcgcggtga aaaggccgcc gctcattccg atttttcggt gaatccgcca
      181 aaccgagagg tcgagacctt cttccttcaa cgccaggtgc catgcccgga cgtgattata
      241 gacgctgtcg acgagcgttc cgtcgagatc gaaaaggaat gatgcggtgc cggtcatagg
      301 agcgccaatt cctcgaacaa tccgcggttc cgaccatcga accctaacgg aaaatcaacc
      361 atgctggtgc atggacgagc gaacgattgg agttccgggg tggaaggcat caggcgaatt
      421 ttaaggagcg ggggcagttc cggccaggaa gacctgcgtc cgcagacgtc gcgcgcagaa
      481 ggcctgattc aggagtttga aagcagcgag aagggctggt tctgggagac cggccgggat
      541 ggctcgttga cctacatcag cgagagcgtg gcgtcggcgc ttggacgaga aactggcgac
      601 ttgctcgagc ggccctttac ggatctcatt tcgaccgatt cggcagacgg gtcggcaacg
      661 tcggaacgga cgctcggctt ctatctttct tcgcacgtcg ccttccaaga tctcatcgtt
      721 cgcgcgaaga ccaagaacga gatttggtgg tcgatctcgg ggcggccggt tcacgacgag
      781 atcggtcgct tctttggctt tagaggcttt gcttccgacc tcacgaagat gcgccagtcg
      841 gaggtcgaac tcgaccgcct cgctcggcag gatgcgttga ccggtctcgc caaccgacag
      901 gcattgcgac gtgcgctcga tgatgcgctg gtgagtgccg tccggcgcaa gcaccgctgc
      961 tcgatgttcc tgcttgacct tgatcgattc aaggcggtga atgacactct tggccacccg
     1021 gccggcgaca cattgctccg cctggttgcc ttgagactgc gcgatgtgat cggcgaagcg
     1081 gggcaggtcg ggcgcttagg gggtgacgaa ttcgaagtcg ttcttccaac cacctccgac
     1141 aagactgagc tgtcaaagct cgcccagggg atcatcgata gcctgtcgcg gccctacacg
     1201 ataaacggca ccgccgtgtc gattggtgca tcggtcggaa tagtcacgtc cgattatgat
     1261 gatcgcacgt ccgacgacct gatgcgcgat gccgaccttg cactctatgc agccaaggca
     1321 gccggaaagg gctgctaccg cttcttcgct gccgagatgc atgaagctgc gcgagaacgt
     1381 cagctgatgg agtccgacct tcgtgtcgcg cttgaaaaag ggcagctgcg gcttgtctat
     1441 cagccatgca tcaatgcctt gagcgaagca gtgacggggt ttgaggcgct gatccgctgg
     1501 gatcatcccg aacatggacc ggtaagtcca gcgcagttca tcccgctcgc ggaagaaatc
     1561 ggcctcatca acgacatcgg cgagtgggtg ctccgaaccg cttgcgctga agcggcgaaa
     1621 tggccgcaga acatatcggt cgccgtcaac ctctcaccgg tgcagttcaa gtcacacgcg
     1681 cttccaacga tggtgaggac ggttcttgcc gagacagaat ttccggccaa gcgcctcgag
     1741 cttgaaatca ccgaaggcgt gtttctcaac aatgatgaac acgttcacga aatgatccag
     1801 agcctcaaag cgatcggact gaagcttgcg ctggacgact tcggcacggg ctattcgtcg
     1861 ctcagttacc ttcagcgggt tcctttcgat aagatcaaga tcgatcagag cttcgtgaga
     1921 ggcgcgtgcg acccgcaaag tcgcaacgcg gcacttatcc gtgcgatggt cggtctcgcc
     1981 tccgatctgc agatgcagac gacggcagaa ggcgtcgaga cgcaggaaga actggagctt
     2041 atccgcaatc ttggctgctc gctgatccag ggatacatct ttggtaagcc gatgcagccg
     2101 gacgatgctc gggagcttgc gtcaaaggga gccgtcgaca agccggaggc gccattcccg
     2161 ccacgcgaac cgcgcatgag gatcattcgg gcggcacttc tccactataa tggtcaggtg
     2221 aaaggcgcgc ggctgcgcaa catctcaagt ggtggagcac tggttgaatg ccgtgaagaa
     2281 ctgccggtcg gtgctcgcgt gcaactcgat tttgcagccg gcggtctcat cgaagccgag
     2341 gtccgctgga ccaagggtac gcaatttggc tgccaattca ctgagaaatt caacctcaaa
     2401 cttctccagc cgacgaagcc aatttcgagc aaaccgccgg tgatgactcc aacttacctt
     2461 actgcgaccg atagcgcaga ggggaaatga ccgttcctcg gggctgagag tgaagcagtg
     2521 gctagcttaa ggccggccta ctcctaggcg tcgatttcct cttcatcgag cgcggacgca
     2581 cggctctgaa tgaattcgaa acgatgttcg ggattacggc ccatcagccg ctcgacgaga
     2641 tccttgatcg gttgtcggtc ttcgtaggcg ctcggcagtg tcaccttcag aagtgatcgc
     2701 gttgcagcat ccatcgttgt ttctttgagc tggctcggat tcatttcgcc caagcccttg
     2761 aaccggctga cttcgacttt ctttcccttg aactcgctcg cctcgagctc tgcgcggtgc
     2821 gcatcatcgc gtgcatagag cgtcttggca ccggcggtca gccgataaag tggcggctgc
     2881 gcgaggaaga ggtgcccgcg gcggaccagc tcgggcattt cctggaagaa aaaagtcatg
     2941 agaagagttg cgatatgagc accgtcgacg tcggcatccg tcatgatgat gatccgctcg
     3001 tagcgaagtg cttcttcgtt gaatttgtcg cgcgttccgc agccaagcgc cagaagaagg
     3061 tcgccaattt cgctattggc ccggatctta tcggccgacg ccgaggcgac gtttaggatc
     3121 ttgccgcgga tcgggagaat tgcctgcgtt ttccggtcgc gcgcctgctt tgccgaaccg
     3181 cccgcgctgt caccttcgac gatgaataac tcggtgcctt caggatcatc gctcgaacag
     3241 tcggtaagct tacccggcag tcgtagcttg cgcgctgaag tggcggtctt gcgaaggacc
     3301 tcgcgttcgg cgcggcggcg cagtcgctct tccattcgct cgatgatcga gccgaggagt
     3361 gcccggccgc ggtccatgtt gtcggcgagg tagtgatcaa agtgatcgcg cacggccgct
     3421 tcgacaaagc gtgcggcctc gagactagtg agccgatcct tggtctggct ctggaaatga
     3481 gggttgcgga tgaagacact cagcatcagt tcgatgccgt tgaacatgtc gtccgccgta
     3541 atgtccttcg ccttcttgtt tccaaccagc tcaccaaagg cccgaatgcc tttggtgaga
     3601 gccgcccgaa gaccagcttc atgcgttccg ccatcgggcg ttggaatagt gttgcagtaa
     3661 tagctttggg atccctccga gtagagcggc cacgcaactg cccactcggc gctcccctga
     3721 tcattgggaa aatcctgccg gccggtgaag ggctggttcg tgacggttgg tcggtcgctg
     3781 agctgctcgg cgagatgatc cgccagtccg cctggaaatt gaaagacggc ctgctccggg
     3841 acatcctttg aagagagcgt cgcatcgcag cgccaacgta tctcaacgcc ggcgaacaga
     3901 taggccttgg atcgggcaag cttgtacagt cgttccggtg agaagttcga gccttcgccg
     3961 aaaatttccg gatccggggt gaagctgacg gtagttccgc gccggttcgg tgctgctcca
     4021 acggtctcaa ggtgagagat tgcaatgccc ctggcgaagg cttgccgata gagtgtgcgg
     4081 tcgcgcgcaa cctcaacgat cgtctcggtc gacagcgcat tgacgacgct aacaccaaca
     4141 ccgtggaggc ctccggacgt cgagtaggct ttcccttcga atttgccgcc ggagtgaagg
     4201 gtggtcatga tcacttcaag tgcggacttg cccggatatt tggggtgggg atcaacgggg
     4261 attccgcgac cattgtcgct gacggtcaga cggttgccac ggccgagctc gacttcgatc
     4321 ctcgtcgcaa agccggcgac ggcttcatcc atcgagttgt cgatgacttc cgcggcaagg
     4381 tggtgaagtg cacgctcatc ggtgccgccg atgtacattc cgggccgccg gcggacgggt
     4441 tcgagaccct cgagtacctc gattgcggat gcatcgtaac tgttggaagc gggagaagct
     4501 gaagacgaaa agaggtcaga catgtgccgc gtaggtatag ggctgccaat gagcctgtgc
     4561 caagcgcacg gcgacccgtt ttccacagca atggcttcgt gcccgaagcc atcttgaaac
     4621 gcgctttttg ttgaccatct gagagtagcc ggacgccatc acgggtccgg cgacggggcg
     4681 gtccttgcct gacgctgcac gtccgctccg ccagtcgctc agatggagga caaacttatg
     4741 cgtagtgctt tcgacttttc gcctttccgg cgttcaacgg tcggtttcga ccgcctcttc
     4801 gatatgctcg agaattccaa tctcggccaa tcgcaggaga actatccgcc cttcgatctc
     4861 atcaggaagg gcgacaatga tttttgcatc cagctcgcgg tcgccgggtt caagcccgac
     4921 gagatcgaca ttaccgctca gcagaatgtg ctgatcgtgt ccggccgtaa gaacgacgaa
     4981 aatgaacaga agaatggcga tttcatttat cgtggaattg ccaaccgttc gtttgagcgc
     5041 cgttttgcgc tcgccgatca tatccaggtc aagggtgccg atctcaagga cggtctcctt
     5101 gcgatcgagc tcgtccgtga gatccccgaa gcgatgaagc cgcgaaagat caatataagc
     5161 ggatctgaaa gcgcgcaccg atcggagatc ggcggccagg ctgcttcaaa gcagaccgtg
     5221 gacgtcgccg ccgagcacgc ctgaaccctg cagcaatgca gcaatgggct ccgggagcag
     5281 gtcgcttccg gagccttttt catcgcatct gttcccagct tctttgttgc gaacaggggt
     5341 tttcaaacta ggttgcgcct gtgggccccc gtccatgctc gagctaggcg tcaagcacac
     5401 gcttgcgtcc gaccggctgc caatgttgct tgaagaggcc aaatcgatcg agtcgatcga
     5461 ctgcgtggac tagccaggag gctcgacgtc tcgcgatcgg gccaaccgac aggaggtcaa
     5521 agccggtcca cggcacgaag ggcgt
//
LOCUS       DASRBJ010000042         3311 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_562292,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000042 DASRBJ010000000
VERSION     DASRBJ010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3311
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_562292"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            78..1307
                     /locus_tag="VE968_01305"
     CDS             78..1307
                     /locus_tag="VE968_01305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III PLP-dependent enzyme"
                     /protein_id="HZU50491.1"
                     /translation="MHNYHRTLGLASSPSGGHSAVDIAKLRPVEPVTLLRPHAARRAA
                     RYFVENFAGRSLYAVKANPSPELLRIFWEAGITHYDVASIGEVRSVRKSLPDAVLCFM
                     HPVKAEECIAEAYFEHGVKTFSLDTVEELDKIVRATSTGGVPASDLNLLVRIRVSSDH
                     AKLSLASKFGADPRDITTLLFAARQAADALGICFHVGSQAMTPAAFGEAMSRVRDAIV
                     DAAVTVDIVDVGGGFPSSYPGMEPPPMETYFSVIHQAFEALPISYSAELWCEPGRALC
                     AEYASVMVRVEKRRADELYINDGAYGALFDAAHIDWRYPVRLVRDRESHVRSMGFSFY
                     GPTCDDLDRMAGPFDLPADVQPGDYIEIGMLGAYGCAMRTQFNGFGVTHSAIVDDEPM
                     ASLYGAAAPARSNVVKL"
     gene            1429..2487
                     /locus_tag="VE968_01310"
     CDS             1429..2487
                     /locus_tag="VE968_01310"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HZU50492.1"
                     /translation="MNAEVNVNDTRKQELLSTPVEHIDITKFDARPVIDAMGKMSFTS
                     RDLARATEIYNRMLEDAACSIILVIAGSTSAGGCMDLYAELVRSNMVDAIVATGATIV
                     DMDFFEALGHKHYQANEIPDDDTLRSLYIDRIYDTYIDEEQLQDCDHTIGKIADALEP
                     RPYSSRAFIREMGKWLSEGNAKKNGSLVQLAYEHDVPIFCPAFTDSSAGFGLVKHQVD
                     AMKRGGRYMTLDSIADFRELTDIKIKAGTTGLLMIGGGVPKNFTQDTVVCAEILGHED
                     VEVHKYAVQITVADVRDGACSSSTLQEAASWGKVSTAMEQMVFAEATSVLPLLASDAW
                     HRGLWRNRERRRFAKLFD"
     gene            complement(2484..>3311)
                     /locus_tag="VE968_01315"
     CDS             complement(2484..>3311)
                     /locus_tag="VE968_01315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50493.1"
                     /translation="SFNFASADFAVLIAGLIGLGLSATLSGTQLDAWGWRVAFLLGAA
                     IVPVGVRLRKTLVETLFLNSERDGAATTSGRLLPIATAGLLIIAGATISNYTLDYVTT
                     YAQSTLNMAVPTAFAATVVLGLVGVAGDLAGGWLSDRFGAKRVLLLPWTLLIVSSAAI
                     FDLLNRTRTPTALLVSTAVLTLFHILGASAATIHFVQALPSRARAGTIGIVYALAIAG
                     FGGTTQFVETLLIRWTGNPIAPGWYMMAAVAIALAGALFIPGRRSERRAPGIRQVLT"
BASE COUNT          686 a          966 c          990 g          669 t
ORIGIN      
        1 cgctgcccca tgggacttcc aaccgcaagg cagcttttcg tcaacgtttg ccgccaggca
       61 tttggaggtc ccttgagttg cacaactatc atcgcacgct ggggctagcg tcctcccctt
      121 ccggcggcca cagcgctgtc gatatcgcca agctgcgccc ggtcgagccg gtcacactcc
      181 tgcgccctca cgcggcgcgg cgtgcggcgc gctatttcgt cgagaatttc gcggggcgtt
      241 cgctctacgc agtgaaggca aacccttcac ccgaacttct ccgcattttc tgggaagccg
      301 ggattacgca ttacgacgtt gcatcgattg gcgaagtacg atcggtccgt aagtcgctgc
      361 ccgacgcggt gctgtgcttc atgcacccgg tgaaggccga ggagtgcatt gccgaagctt
      421 atttcgagca cggagttaag acgttcagcc tcgatacggt cgaggaactc gacaagatcg
      481 ttcgagcgac gtcgacaggt ggcgttccgg caagcgatct caatctcctg gttcgcatcc
      541 gcgtcagttc cgaccatgca aagctgagcc ttgcgtccaa gttcggcgct gacccgcgcg
      601 atatcaccac cctgctgttt gctgcgcgcc aggcggccga tgcactcgga atctgcttcc
      661 atgtcggcag ccaggccatg actccggcag cattcgggga agcaatgtcg cgagtccgtg
      721 atgcgatcgt cgacgctgcc gtgaccgtcg acatcgtcga tgttggcgga ggattcccat
      781 cttcctatcc ggggatggaa ccgccgccga tggaaacata tttttcggtg atccatcaag
      841 cgtttgaagc actgccgatt agctattcgg cggagctctg gtgtgagccg gggcgagctc
      901 tatgcgccga atatgcaagc gtgatggtgc gtgttgaaaa gcgccgtgcc gatgagcttt
      961 acatcaacga tggagcctat ggcgctctgt tcgatgccgc gcacatcgat tggcgctatc
     1021 cagtccggct ggtacgcgac cgcgagtcgc acgtgcggtc gatgggcttc agtttctacg
     1081 ggccgacgtg cgatgatctt gatcgcatgg cgggtccatt cgacttgccc gcggatgtcc
     1141 agccaggcga ttatatcgaa attggaatgc tgggcgctta tggatgcgcc atgcgcacgc
     1201 agttcaatgg cttcggcgtc actcactcgg ccattgtgga cgatgagccg atggcgagcc
     1261 tttatggtgc tgcagcgccg gctcgctcga acgtggtgaa gctctaagag aaacccctcg
     1321 gcatttgccg ggggacgacg gagggtgagg ctgtcccctc cacatgagaa tgacacgcct
     1381 tgctttggat ctctcccgca aagcgggcga gaactattgg agttgggaat gaacgcggaa
     1441 gttaacgtca acgacactcg caagcaggaa ctgctgtcga cgccggttga gcacattgac
     1501 atcaccaagt tcgatgcgcg gcccgtcatc gacgcgatgg ggaagatgag tttcacgagc
     1561 cgtgatctcg cgcgtgcaac agagatctac aaccggatgc tcgaggatgc agcctgttcg
     1621 atcatcctcg tgattgcggg ttccacttcg gccggtggct gcatggatct ttatgccgag
     1681 ctcgtgcggt cgaacatggt cgacgccatc gtcgccaccg gagcaacgat cgtcgacatg
     1741 gatttcttcg aggctcttgg gcacaagcat tatcaagcga acgaaattcc tgacgatgat
     1801 acgcttcgat cgctctacat cgaccggatt tacgacacct acatcgatga ggagcagctc
     1861 caggactgcg accacacgat cggcaaaatc gccgatgctc tcgagcctcg gccctacagc
     1921 agtcgcgcgt tcatccgtga aatgggcaaa tggctaagcg aagggaatgc caagaaaaat
     1981 ggcagcctcg ttcagcttgc ctatgaacat gatgttccga ttttctgccc cgcgtttacc
     2041 gacagttcgg caggattcgg gctcgtcaag caccaggtcg acgcgatgaa gcgtggcggc
     2101 cgctacatga cgctggatag cattgccgat tttcgcgaac tgacggacat caagatcaaa
     2161 gccggaacta ctggattgct catgatcggc ggcggcgtgc ccaagaactt cacgcaggac
     2221 accgtcgtct gcgcggagat tctcgggcac gaagatgtcg aggtgcacaa atatgccgtg
     2281 cagatcactg ttgccgacgt gcgcgatggc gcctgctcat cctcgactct ccaggaagcc
     2341 gcgagctggg gcaaggtttc gacggcaatg gagcagatgg tctttgccga agcgacgagc
     2401 gtccttccgc ttcttgctag cgacgcatgg catcgggggc tctggcgcaa tcgcgaacgg
     2461 cgccgcttcg caaagctctt tgactaagtc agcacttgcc ggatcccggg cgcacgccgt
     2521 tcagagcggc gcccggggat gaacagcgca ccagcgagcg caatcgccac ggcggccatc
     2581 atgtaccacc cgggagcaat tggattccca gtccaccgga tgagaagtgt ttcgacgaat
     2641 tgcgtcgtcc cgccgaaccc cgcgatcgcc agtgcataga cgataccgat tgttcccgct
     2701 ctcgcccgac taggaagcgc ttgaacgaag tggatggtag cggccgatgc gccgaggatg
     2761 tggaacaatg ttagaaccgc tgtcgagacg agtagtgccg ttggcgtgcg ggttctgttc
     2821 aatagatcga agatggcggc actgctaact ataagaagcg tccaaggtaa taggagcacc
     2881 cgcttcgcgc cgaacctatc ggaaagccat ccgccggcta ggtctcctgc gactccgacc
     2941 aggccaagaa cgaccgttgc tgcaaatgcg gtcggaacag ccatgttgag cgtcgactga
     3001 gcgtaagtcg tgacataatc caatgtgtaa ttgctgatgg tcgctccagc gatgatcagg
     3061 aggcccgccg tcgcaatcgg cagcaaccgg ccgctcgtcg tcgctgcgcc gtcgcgctcg
     3121 ctgttcaaga atagcgtctc gacaagcgtc ttgcgaagcc gaactccgac agggacaatt
     3181 gctgcaccga ggagaaaggc aacgcgccac ccccatgcat cgagctgcgt tccactgagc
     3241 gttgccgaca atcccagtcc aatgaggccg gcgatcaaca cagcgaaatc ggccgatgcg
     3301 aagttgaatg a
//
LOCUS       DASRBJ010000043         6059 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_359422,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000043 DASRBJ010000000
VERSION     DASRBJ010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6059
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359422"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..897)
                     /locus_tag="VE968_01320"
     CDS             complement(<1..897)
                     /locus_tag="VE968_01320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HZU50494.1"
                     /translation="MMRQSILAGLLTAAASIAVAAPTPKEQLLVPPAGARHYTITSTA
                     GKHGDMWSWTLPNGQSAYRMSMSLRGWVTEDDELITTGADGRPTAIAIRGYTDQGDAT
                     EDFNVDGSAVAHWKTSIDAGAAPYAGKRYNTYGGPPIAVEKDIDALVAAGPTGIDLLP
                     SGHASISIGPSVQIEGPQGPRTVKLAFVMGYGFSPSPVWLDEQNHFFGTAGLIAVLPE
                     GFEKNAAKLKDVQDAATAAMVRNVAHQFLQPRNHGPTLVDHVLMFDSIEGRYIPDRAV
                     LIADGKVAAIGPAGSIKAPAGAA"
     gene            complement(1015..1578)
                     /locus_tag="VE968_01325"
     CDS             complement(1015..1578)
                     /locus_tag="VE968_01325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019053734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HZU50495.1"
                     /translation="MVTRIREIRRARGFTLDEIARRCDPPTTPQTIGRLETGARTVSI
                     GWLERIASAMGVRAQDLMAPAENRALEVAAVIGPRGALAPKKNAVLVPPQASDGQLAV
                     VVETSVGEYRAGDEIWCEIVPSGDYARALNHDVLVPRSGMRLLFGRLINRDEEKLQIL
                     PLEAGARQQVVSSPPWLAVAKLLVRRL"
     gene            complement(1678..1824)
                     /locus_tag="VE968_01330"
     CDS             complement(1678..1824)
                     /locus_tag="VE968_01330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50496.1"
                     /translation="MRSNSGKDEARDNLHDPTLRDRELGRDETKSSAKKPTAPADHRG
                     GRKD"
     gene            1912..2568
                     /locus_tag="VE968_01335"
     CDS             1912..2568
                     /locus_tag="VE968_01335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003043351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HZU50497.1"
                     /translation="MILYGSSLSPYVRKVLAYAAEKGIELELTPTGRGPGQPSDEFLE
                     ASPLRKMPAFRDEEFTLADSSAIIHYLEARFPDPAMIPSDPRMRGKVIWFEEFADTSL
                     TACSGKMFYNRIVAPRFLGKEGDEEVAKTAEREEMPSLLDYLETVVPPAGEFLVGNKI
                     TLADIAIASPFANFSHLGCERDRARHSRVFDYVDAILERQSFKTFIEREAALLARVAA
                     "
     gene            complement(2653..3234)
                     /locus_tag="VE968_01340"
     CDS             complement(2653..3234)
                     /locus_tag="VE968_01340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50498.1"
                     /translation="MADERDNQSQANEGKGQQTAGQQGQNSEFGNQGVETGSGATNTT
                     GEKSPNAKVGAGQPIGGNDSNTGSGTTLTQGADFAGQSSTGQAQASDGTGDTLTSDEQ
                     RSGGTFGQGTTSNAGGSSVGGDRGSGSSSGTAGGAGFIGSDANTSDDYLQENVRSSGQ
                     SRSNSSTPEDTGGNDFARDGRGALDDDDTSTSS"
     gene            complement(3404..3991)
                     /gene="rplI"
                     /locus_tag="VE968_01345"
     CDS             complement(3404..3991)
                     /gene="rplI"
                     /locus_tag="VE968_01345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HZU50499.1"
                     /translation="MEVILLERVEKLGAIGDVVKVKDGFARNYLLPRKKALRANDANR
                     RLFEANRARIEEENANRRSDAEKSAKGVDGKTIQLIRQASNTGQLYGSVSARDIVDAL
                     EADGAKVSKSQVVLDRPIKAIGMHEVKIALHPEVSVKVKVNVARSPEEADLQAQGIDV
                     MAQMFERDTAAFTEAYDPNAEPGATAEASPAPSEA"
     gene            complement(4003..4227)
                     /gene="rpsR"
                     /locus_tag="VE968_01350"
     CDS             complement(4003..4227)
                     /gene="rpsR"
                     /locus_tag="VE968_01350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006832330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HZU50500.1"
                     /translation="MARAFFRRRKSCPFSGKDAPKIDYKDIRLLQGFVSERGKIVPSR
                     ITAVSSKKQRELARAIKRARHLGLLPYVVK"
     gene            complement(4227..4622)
                     /gene="rpsF"
                     /locus_tag="VE968_01355"
     CDS             complement(4227..4622)
                     /gene="rpsF"
                     /locus_tag="VE968_01355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016747031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HZU50501.1"
                     /translation="MPLYEHVFLARQDLAQAQVDALAENATKIIEDNGGKVVKTETWG
                     LRSIAYRIAKNRKAHYVALDVDAPAAAIAELERQSNINEDVIRFLTIRVDELEKGPSA
                     MMRRGEKDRERRSDRGDRMDFRMREEEVE"
     gene            4870..5379
                     /locus_tag="VE968_01360"
     CDS             4870..5379
                     /locus_tag="VE968_01360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010339441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50502.1"
                     /translation="MTARSIRTAAASLVAIAIAGCTTTGVGTGQSMTGNIGATFTWTE
                     TGGTQGTMVAQLSDGQVFQGPMFQITSESRVTDYGSLWAGWGPGWGWHRPWSRFGWGW
                     GGWGPWGPDDQTITHYSGQVLANLQGPGGFMRCHFTLMSPSYGMAGGGVGQCQLPSGA
                     IINAQFPRH"
     gene            5436..>6059
                     /locus_tag="VE968_01365"
     CDS             5436..>6059
                     /locus_tag="VE968_01365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008830299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HZU50503.1"
                     /translation="MATQLRSLATEDPLDGQSLPGWIYVDEEFFEAEKRAFLRAAPQV
                     VCHESEIPEPGEWRSLDYLGESIIVIRGDDNAIRAFSNVCRHRGSRIVDGSGGCAKVL
                     TCPYHAWSYARDGRLVGVPHRQEYPNLRVDELGLQRVSLEIWHGFVFVTLDGGAPTVA
                     QMMAPYEGEIAPYRFEDLRAIGRVTLRPRSLNWKTIADNYSDGLHIPV"
BASE COUNT         1124 a         1847 c         1827 g         1261 t
ORIGIN      
        1 cgcggcgccc gcgggtgcct taattgatcc cgcagggccg atcgccgcga ccttgccatc
       61 ggcaatcagg actgcccgat caggaatgta tcggccctcg atcgaatcga acatgagaac
      121 atggtcgaca agcgttggtc catggtttcg gggctgcagg aactggtgcg cgacgttccg
      181 gaccattgct gccgtggccg catcctgcac atccttaagc ttcgctgcgt tcttctcgaa
      241 cccctcggga aggacggcga tcagtccggc ggtgccgaag aagtggttct gttcgtcaag
      301 ccacactggg ctcggcgaaa atccgtaacc cataacgaag gcgagcttga cggttcttgg
      361 tccttggggt ccctcgatct gcaccgacgg tccgatgctg atggaagcgt gcccactcgg
      421 cagcagatcg attcccgtcg gacccgcagc gaccagcgca tcgatatcct tttcgacagc
      481 gatcggcggt ccaccatagg tgttgtagcg tttgcccgcg tagggcgccg cgccggcatc
      541 gatcgacgtc ttccaatgcg caaccgcgct gccgtcgaca ttgaaatcct ctgtcgcgtc
      601 gccctggtcc gtatagccac gaattgcgat agccgtggga cggccatcgg cgccggtggt
      661 aatgagctcg tcgtcctcgg ttacccagcc gcgcaacgac atcgacatgc gataggcgga
      721 ctgaccattg ggcagcgtcc acgaccacat gtcgccgtgt ttgccggcgg tcgaagttat
      781 cgtgtaatgg cgcgcgccag cgggaggcac aagcaactgc tccttgggcg taggcgcggc
      841 gacagcaatg gatgcagcag cagtcagcag gccggcaaga atggattggc gcatcatgat
      901 tttcccccgg gataagcgcg atggagcgca tgatagacgg caaaggggcg agagacaaaa
      961 aaggggtgat tgcgcgcgct cgtgaagaag ggggcccgcc ttcgtcggga tttgctagag
     1021 gcggcgaacc aggagcttgg caacagcaag ccagggaggg ctcgacacca cttgttggcg
     1081 tgctccagct tcgagcggca agatctggag cttctcctcg tcgcgattga tgagccgacc
     1141 aaacagcaaa cgcattcccg aacgaggtac cagcacgtcg tgattgagcg cgcgcgcata
     1201 atcacccgac gggacgatct cgcaccaaat ttcatcgcct gcgcggtatt cgccgacgct
     1261 agtctcaacc actaccgcca attggccatc acttgcctgc ggcggaacga ggacggcgtt
     1321 cttcttgggg gccagcgcgc cacgcgggcc aatcacggca gcgacctcga gcgcccggtt
     1381 ttcagccggt gccatcagat cctgcgcacg tacacccatt gcgcttgcaa tgcgttcgag
     1441 ccacccgatc gaaacagtcc gcgcccccgt ttcaagccga ccgatcgtct gcggtgtcgt
     1501 cggcggatcg cagcggcgtg caatttcgtc gagagtgaac ccgcgcgcgc ggcggatttc
     1561 ccggattcgc gtgaccatca agagagcccc cgctcattga acctgatagg ctccttaaat
     1621 ctgctataaa ataaccaaat tggcaaatag agtctacgct ccgaaacggg ctcggcttca
     1681 atccttgcgg ccgccgcgat ggtcggcggg agccgtcggt ttcttggctg aagacttggt
     1741 ctcgtcgcga ccaagctcac gatcgcgaag ggtcggatcg tgaagattgt ctcgcgcttc
     1801 gtccttgccg ctgttgctgc gcatccgtct cactcctact ggtgcgaaag cgtcaacggg
     1861 cgagccggtc cgaatttccg cgcctcgccg ctctggagga ggtccctgcc catgattctc
     1921 tatggctcgt cattatcgcc ctatgtacgc aaggtgcttg cctacgccgc ggagaagggg
     1981 attgaactcg aactaacgcc aaccggccgt ggcccaggcc agccaagcga tgagtttctc
     2041 gaagcaagcc cgcttcgcaa gatgcccgcc tttcgcgatg aagaattcac gctcgccgat
     2101 tcaagcgcga tcattcacta tctcgaggcg cgattccccg atccggcgat gatcccgagc
     2161 gatccgcgaa tgcgtggcaa agtgatctgg ttcgaggaat tcgccgacac ctcgctgacc
     2221 gcttgcagcg gcaagatgtt ttacaaccgg attgtcgcac cgcgcttcct cggcaaggag
     2281 ggtgacgagg aagtggcgaa gaccgctgaa cgagaagaaa tgccttcgct gctcgattat
     2341 ctggagaccg tcgttccacc cgctggcgaa ttcctcgttg gcaacaagat cactcttgcg
     2401 gacattgcga tcgcaagccc ttttgcgaac ttctcgcatc ttggctgcga gcgcgaccgg
     2461 gcacgccaca gtcgcgtgtt cgactatgtc gatgcgatcc ttgaacgaca aagtttcaag
     2521 acttttatcg aacgtgaggc ggcgctcctg gcgcgggtcg ctgcatgaaa attgcgggcg
     2581 cgccggaatt cggcgcgccg ccagttttta gcaagttcta acgcggaagc agccgcttct
     2641 actgttgccg attcagcttg aggtcgacgt gtcgtcgtca tcgagcgcac cgcgcccgtc
     2701 acgcgcaaaa tcgtttccac cggtgtcttc gggcgtcgaa gaattgcttc tggactgacc
     2761 cgaactccgg acgttctcct gcagataatc atcggaagtg ttcgcatcgg aaccgatgaa
     2821 ccccgcgccg ccagcggttc cactcgaact tccagaaccg cggtctccgc cgaccgacga
     2881 gccgcccgca ttacttgtcg tgccttggcc gaaggtgccg cctgagcgct gctcatcgct
     2941 ggtaagggtg tcaccggtac cgtcacttgc ctgggcctga ccggtcgaac tctggccggc
     3001 aaagtcggcg ccttgcgtca gcgttgtacc gctgccggtg ttgctgtcat tgccgccaat
     3061 gggctgcccg gcgccgactt tcgcgtttgg cgacttctcg ccagtcgtgt tcgtcgctcc
     3121 gcttccggtt tcgacgccct ggttgccgaa ttcgctattc tgcccttgct gcccggcagt
     3181 ctgctggccc ttgccttcgt tcgcttgaga ttggttgtcg cgttcatccg ccatgggaag
     3241 ctccttactg gtttccgctc gttctgcggt tcagaacaag gcgccggcgc gaagcgttcc
     3301 gagggatcgc gatggtttgc gacgaacagt tcggcgaacg aaaaaggccg ccgatcttgc
     3361 gaacggcggc ctcaatatat tcgagcctag gctcgctgat ccactaagct tcgcttggag
     3421 ctggcgaagc ttccgccgtc gctccaggct ccgcgtttgg atcataggct tcagtgaagg
     3481 cggcagtgtc gcgttcgaac atctgcgcca tgacgtcgat accctgcgcc tgcagatcgg
     3541 cctcctccgg tgagcgggcg acattgacct tcaccttgac ggaaacttca gggtggagtg
     3601 caatcttcac ctcgtgcatg ccaatcgcct tgattggacg atcgagcacg acctggctct
     3661 tgctgacctt cgctccgtcg gcctcaagcg catcgacaat gtcgcgcgcg ctgactgaac
     3721 cgtaaagctg gccggtattc gaggcttggc gaatgagctg gatggtcttc ccgtcaacac
     3781 ccttcgccga cttctcagca tccgatcggc ggttcgcatt ttcttcctcg atgcgagcgc
     3841 gattggcttc gaacagtctg cggttggcgt cattggcgcg gagcgccttt ttgcgaggca
     3901 ggagatagtt gcgggcaaag ccgtccttga cctttacgac gtcgccgatt gcgccaagct
     3961 tctcgacgcg ttcaagcaga ataacttcca tgacggcgct ccttatttca cgacgtaggg
     4021 gagcaggccg aggtgacggg cgcgcttgat tgcacgcgca agctcacgct gctttttcga
     4081 ggagacggca gtgattcggc tcggcacgat cttgccacgc tcggagacga agccctgcag
     4141 aaggcggatg tccttgtagt cgatctttgg cgcgtccttg cctgaaaacg ggcaggactt
     4201 tcggcgacgg aagaatgcgc gggccattac tcgacctcct cttcacgcat gcggaagtcc
     4261 atgcggtcgc cgcggtccga gcgacgctcg cgatcctttt caccccgccg catcatcgcc
     4321 gacgggccct tctcaagctc atcgacacgg atggtgagga aacggatcac gtcctcgttg
     4381 atgttcgact gccgctcgag ctcggcgatt gcagccgccg gcgcgtccac gtcgagcgcg
     4441 acatagtgag ccttgcgatt cttggcgatg cgataggcga tcgaacgaag gccccatgtt
     4501 tcggtcttga cgacctttcc gccattgtct tcgattatct tggtagcgtt ttccgcgagc
     4561 gcatcgacct gagcttgtgc aaggtcctgc cgcgcgagga aaacatgctc gtagagcggc
     4621 atgtttctcg tctctctttt ggccgatcgc tgacgtaccc ctgtggcacg cccctccggc
     4681 tgtcttccaa aaagtacagg cgcagcggca aagccgtgcg ccagctctga cgctatgacc
     4741 gatctggtcg caaaaggcaa ccgagcgatg aacttgggcg gaccgtttac gcacaaagca
     4801 atgaactttc gcggctgtgg gaccctcggc accaccctga ccgttttgac gatgaaagga
     4861 ggcgactaaa tgactgcaag atcaatcaga accgcagcgg cgtcgctcgt tgcaatcgcg
     4921 attgctggct gcacgaccac tggtgttgga accggacaat cgatgaccgg aaatatcggc
     4981 gcgacgttca cttggaccga aacgggcgga acccaaggca cgatggtggc ccagctcagc
     5041 gacgggcaag tgttccaggg tccgatgttc cagattacct cagagagccg cgtcaccgac
     5101 tatggctcgc tctgggccgg gtggggtccg ggatggggtt ggcaccgtcc ttggagccgc
     5161 ttcggctggg gctggggcgg ttggggtcca tggggcccgg atgaccagac gattactcat
     5221 tattcagggc aggttctcgc caatctccaa gggccaggcg gattcatgcg ctgccacttc
     5281 accctgatga gcccgagcta tggaatggcg ggcggcggcg tcggtcagtg ccagcttccg
     5341 tccggcgcaa tcatcaacgc gcaattcccg cggcactgag ccattgagcg gacccgcgga
     5401 ttgcattccg cgggtccgcc gtggcacatg gcgccatggc gacacagctc aggtcacttg
     5461 caacagagga tccgctggac gggcaaagcc tgcccggctg gatctacgtc gacgaagaat
     5521 tcttcgaagc ggagaagcgc gccttcttgc gcgcggcgcc gcaggtcgtg tgccacgaaa
     5581 gcgagattcc cgagcccggc gagtggcgat cgcttgatta tcttggcgaa agcatcatcg
     5641 tcattcgcgg cgacgataat gccatacgcg ctttctcgaa cgtctgccgc caccgtgggt
     5701 cgcgaatcgt cgacgggtct ggcggttgcg caaaggtact gacatgtccc tatcacgcgt
     5761 ggagctatgc gcgtgacggg cggctggttg gcgtgccgca tcgccaggaa tatccaaatt
     5821 tgcgcgtcga cgagcttggc ctccagcgcg tttcgctcga gatttggcat ggtttcgttt
     5881 tcgtaacgct tgacggtggc gctccaaccg ttgcgcagat gatggctccc tatgagggcg
     5941 aaattgcccc ctaccgtttc gaggacctcc gagcgatcgg gcgagttacg cttcgtccac
     6001 gttcactgaa ctggaagacg atcgcggaca attactcgga cgggttgcac attcccgtc
//
LOCUS       DASRBJ010000044         7335 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_156781,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000044 DASRBJ010000000
VERSION     DASRBJ010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7335)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7335
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156781"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2560
                     /locus_tag="VE968_01370"
     CDS             <1..2560
                     /locus_tag="VE968_01370"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HZU50504.1"
                     /translation="PPTDRASALPELATIVFTGKGEFRKVQPGQIKADAAYERYCEQL
                     ATKIGELVAVQRADKLASDIAAGLRAGQAFSTRYGRAKRAAGVADFNDLIEWSRRLLK
                     QSGMADWVGYKLDRQIDHLLVDEAQDTNSAQWQIIEQLVDEFFSGQSETDHRKRTLFM
                     VGDFKQAIYGFQGTDPRRFLEARTRFRDRALKLSGAEAATEFRDLSITASFRSAQSLL
                     DVVDRFIKTVGAEALGLREPPPVHCAHHAGRPGFVELWHPFAVEQSADDLDNGEERWI
                     SLRDRRYADVLAERIRSMIVEGNVLASTGRPITAGDILVLVRSRGELASLIVARLFSA
                     GVPVAGVDRLHLHEPLAVQDLLSAVRFAVQPNDDLSLACLLVSPLIGWDQDKLRSLAF
                     GRKASLWRELRRRRTEFEDVHAMLGELLRIADFTPPSRFLETILTGPMEGRRKLYARL
                     GIAARDPIDELMNSALEFERNEAPSLDRFLAWFSRGTVDVQRDPGHRGNEVRVMTVHG
                     AKGLEAPIVILADATADPVKLGRTPIAIEMEVQNSSPVPVLRPKKAERCPPFEAIIAA
                     QEKADLEEHMRLLYVALTRASDRLIVSGVRPKEKKDASDPRPPKSWHVLVEQAMESLG
                     CTPGEGHVALSYGTRSTTQAPAATIRTAVQAPAIPQWARRPAPPESKPPRPLAPSALA
                     IDNDVALAPSERMRAAALRGTWIHQLLERLPAVPCEMRRTVADRWLERSAGVSDRRLR
                     EEIVQQVCAILSDERFADFFAPQSLAEAPLAATLPDGRVIAGTVDRLLVEKDRVSVLD
                     FKTGRVPSTVGEIPASHRSQMDAYVEALEVIFPGRRINAALLYTAGPQLYELAT"
     gene            2622..2972
                     /gene="trxA"
                     /locus_tag="VE968_01375"
     CDS             2622..2972
                     /gene="trxA"
                     /locus_tag="VE968_01375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_process: GO:0006662 - glycerol ether metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HZU50505.1"
                     /translation="MATKTVTDQSFASDVLGSQGPVLVDFWAEWCGPCRMIAPALEEI
                     AGELGDKVTIAKLNIDENPDTPSRYGVRGIPTMLLFKGGQPVAQKVGAAPRSQIQQWL
                     ESNLGASSQNARQA"
     gene            complement(2977..3414)
                     /locus_tag="VE968_01380"
     CDS             complement(2977..3414)
                     /locus_tag="VE968_01380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HZU50506.1"
                     /translation="MGLTGRCLCGAVRYELLSRPFDCGWCHCRTCQLNSGSPAMVFAS
                     VPDGDLRWTSGAEKLKSIRSSDFGHRTFCGECGTPFLMKVDHQPETVDFSVATLDDPT
                     AVSPGFHIFWNSRIPWAETVDALPRHDKFRPDTRGLTGTDPPD"
     gene            3534..6272
                     /gene="secA"
                     /locus_tag="VE968_01385"
     CDS             3534..6272
                     /gene="secA"
                     /locus_tag="VE968_01385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020820874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HZU50507.1"
                     /translation="MFAGLAKSIFGSANDRYVRGLGKYVAAVNGFEPNIQALTDDELR
                     GQTDKLRARLADGEKLDDLLPEAFATVREAAIRTLGQRHYDVQLIGGIALHRGEIAEM
                     KTGEGKTLVATLAVYLNALEGKGVHVVTVNDYLARRDADWMGQIYRFLGMSVGVIVPN
                     LTDQERRDAYNADITYATNNELGFDYLRDNMKYSRDQMVQRPFNFAIVDEVDSILIDE
                     ARTPLIISGPTDDKSDLYIAVDGIVKSLQPSDYEKDEKQKSVVLTEEGTEKAERMLEG
                     AGLIEGRNLYDITNTQVVHHLNQALKANVMFKKDIDYIVKDGKIVIIDEFTGRMMDGR
                     RWSDGLHQAVEAKEGVQIEPENQTLASITFQNYFRMYPKLSGMTGTAMTEAPEFFDIY
                     KMNVVAIPTNVPVQRIDEDDEFYKTITEKFAAIAKEIKEKQELGQPVLVGTVSIEKSE
                     MLSEYLKAEGIRHSVLNARFHEQEAHIVAQAGRLGAVTIATNMAGRGTDIQLGGNLEF
                     RMRDEYSSLAEGTPEYDQQAEKVRAEIAAEKQRVLEVGGLYVLGTERHESRRIDNQLR
                     GRSGRQGDPGLSKFYLSLDDDLLRIFGPQTMFARLMNKNLEDGEAIVSPWISKAIETA
                     QKKVEARNYDIRKQVVEFDDVMNDQRKVIYEQRADIMDADNVSDVIHDMRAETAAAIV
                     LVNCPEGTYPEQWNVQELKDSIDVVFGLQPPIDDWLQEDAVDQEMIIDRLRKLADETM
                     ETKVADIDPEQWREIEKQMLIQTLDHHWKEHLATLDALRQVIHLRSYAQKKPIDEYKQ
                     EAFLLFERLLVAIREEVTRTLMRAQFQFQPPPLPELPDFITQHLDPFSADDDSADLDA
                     AARGIMPTLPPLLNIPQPPLPQRDASGNVVEAPISRNAPCPCGSGKKYKHCHGQPA"
     gene            6287..>7335
                     /locus_tag="VE968_01390"
     CDS             6287..>7335
                     /locus_tag="VE968_01390"
                     /inference="COORDINATES: protein motif:HMM:NF013761.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HZU50508.1"
                     /translation="MRAQLDRTELRRAYRADEERVDSERVEEAQLNERELGEATAIAR
                     ALVKGVRAHKPSGVDAFLHAYDLGSDEGIAMMCLAEALLRIPDDHTANELIADKLSGP
                     DWSEKLGSSDSAFVNAATFSLLLTGKVLESAQDKSSNWKSALGRAVGRLGEPVVRTAV
                     REAMKILGRNFVFGRTISEALKRAEPERRKGLSHSFDMLGEAAKTFDDAARYSQSYAN
                     ALEAIANDASGGFRRSPGISVKLTALDPRFEYTRARDALARVIPIVRDLALKASRADV
                     HFTIDAEEADRLELQMDVFEALLADDELFENGWGGLGIAIQAYQKRAVPLCDWVVRAA
                     RANGRKLMCRLVKGA"
BASE COUNT         1553 a         2137 c         2205 g         1440 t
ORIGIN      
        1 gcccccgacc gatcgagcgt ccgcacttcc tgaactcgcg acgatcgtgt tcacggggaa
       61 aggggagttt cggaaggtcc agcctgggca aatcaaggcc gatgctgctt acgagcgtta
      121 ttgtgaacag ctcgcgacaa aaattggcga gttggttgcc gttcagcgcg ccgacaagct
      181 cgcgtccgat attgctgccg gcctgagagc gggccaggca ttctcgaccc gctatggccg
      241 ggcaaagcgc gcggccggtg tcgcggattt caacgatctg atcgagtgga gccggcgcct
      301 tctgaaacag tccggtatgg cggactgggt cggctacaag cttgatcggc agatcgatca
      361 tcttttggtc gacgaggcgc aggacaccaa cagcgcgcaa tggcaaatca tcgagcaact
      421 cgtcgacgaa ttcttcagcg gccaaagcga gacggaccac cgcaagcgaa ccttgttcat
      481 ggtcggcgat ttcaaacagg cgatctacgg cttccaggga actgatccgc gtcgttttct
      541 cgaagcgcgc acgagattcc gggatcgagc gctcaagctc tctggagcgg aggcagcgac
      601 ggaatttcgt gacttatcaa tcaccgcaag ctttcgctcg gcgcagagcc tactcgatgt
      661 tgttgatcgc ttcatcaaga ccgtaggtgc agaggccctc ggtttgcgcg aacctccgcc
      721 ggtccactgc gcacatcatg ccggacggcc aggtttcgtg gagttgtggc atccatttgc
      781 ggtcgagcaa tcggcagacg atctggacaa tggcgaagaa cgatggatct cgcttcgcga
      841 ccggagatat gcggacgtgc tcgctgagcg aatccgctcg atgattgttg agggcaatgt
      901 tctagcgtcg acgggacggc ccataaccgc cggtgacatc ctcgtcttgg ttcgaagtcg
      961 tggcgagctt gcttccctga ttgtcgcccg ccttttttcc gctggggtac cggtcgcagg
     1021 cgtcgatcgt ctgcaccttc acgagccgct tgcggttcag gatctccttt ccgcggtgag
     1081 gttcgcagtc cagcccaacg atgacctcag cctcgcctgc ttgttggtct cgccactcat
     1141 cggatgggat caggacaagc tacggtcgct cgccttcggt cgaaaggcat cgttgtggcg
     1201 ggagctgcgc cgacgtcgaa cagaatttga ggatgtgcat gcgatgctcg gcgagcttct
     1261 gcgcattgct gatttcacgc cgccgtcccg atttcttgag acaattctta ccggcccgat
     1321 ggaggggcgt cgaaagctct atgcccggct tgggatcgcg gcacgcgatc cgattgacga
     1381 acttatgaac agcgcgctcg aatttgagcg caatgaagcg ccctcgctgg accgtttcct
     1441 ggcatggttc tcgcgcggca cggtcgatgt acagagggac cccggccacc gcgggaatga
     1501 agttcgggtg atgacggttc atggtgcgaa gggcctcgaa gcgccgatcg tcatcctcgc
     1561 tgatgctacg gccgatcctg ttaagctcgg ccgaacaccg atcgcaatcg agatggaggt
     1621 ccagaactcg tcgccagttc cggtcctaag accgaagaag gcggagcgct gccctccatt
     1681 cgaagccatc atcgctgccc aagaaaaggc cgacctcgaa gaacacatga ggctcctcta
     1741 cgtcgctctc acgcgggctt cggaccgact gatcgtcagt ggcgtccgac caaaggagaa
     1801 gaaggacgcg tccgatccaa gaccacccaa atcttggcat gtgctggtgg aacaagcgat
     1861 ggaatcgctt ggctgcacgc cgggagaagg tcatgtcgcg ctcagctatg gcacgaggtc
     1921 gacgacgcaa gctcctgccg caacaatcag gaccgctgtc caagcgccgg caattccgca
     1981 atgggctcgg cgacctgcgc ctcctgaatc gaaaccgcca cgaccgctgg ctccctctgc
     2041 tcttgcgatt gacaacgatg ttgctcttgc gccgagtgag cgcatgcgtg ctgcggcact
     2101 tcgcggcacc tggatacacc aattgctcga gcggctcccg gccgttcctt gcgagatgcg
     2161 ccgaacagtg gctgaccggt ggcttgaacg ctcggccggc gtcagcgaca ggcgtcttcg
     2221 ggaggaaatc gtgcagcagg tttgcgctat cttgtcggac gaacggttcg ccgatttttt
     2281 tgcgccgcag tcgcttgctg aagcgccgct cgctgcgacc ttgcccgacg gccgggttat
     2341 tgccggcacg gttgatcgct tgcttgtcga gaaggatcgc gtttccgtgt tagacttcaa
     2401 gacgggtcga gttccctcaa ctgtcggcga aatccccgct tcgcatcgca gccaaatgga
     2461 cgcctatgtc gaggcactcg aagtcatctt ccccggtcgc cgcatcaatg cggcgctcct
     2521 ctacaccgct ggaccgcagc tgtatgagct cgcgacttga gcgcgccgaa cggaacgccc
     2581 atatccagtg ttaacttttg aactcaggag attcgcccgc catggccacg aagacggtca
     2641 ctgatcaaag ctttgcttcc gatgtcctcg gttctcaagg acccgtgctc gtggatttct
     2701 gggcggaatg gtgtgggccc tgccgaatga ttgcgccggc tctcgaggaa attgctggtg
     2761 aactcggcga caaggtaacg atagccaagc tcaacattga cgaaaatccg gatacgccga
     2821 gccgctacgg cgttcgcggt atccccacaa tgctgttgtt caagggcggc cagccggtcg
     2881 cgcagaaggt tggtgctgca cctcggagcc agatccagca atggctcgag agcaatctcg
     2941 gcgcttcatc gcaaaacgct cgccaggcct gattcgttaa tctggaggat cagttcccgt
     3001 aaggccgcgc gtatcgggtc tgaatttatc atgtctcggc aacgcgtcca ccgtttctgc
     3061 ccaggggatg cggctgttcc agaagatgtg aaagccgggg ctcacggccg tgggatcgtc
     3121 gagcgttgcg acgctgaaat cgacggtctc gggctgatga tcgaccttca tgagaaacgg
     3181 ggttccgcat tcaccgcaaa aagtacggtg gccgaaatcc gatgaacgga tggacttcag
     3241 cttctccgcg cccgacgtcc agcgcaaatc gccgtctggg acgctcgcaa agaccattgc
     3301 cggggagccg ctgttaagct ggcaggttcg gcaatggcac cagccgcagt cgaacggtcg
     3361 actgaggagc tcgtagcgca ctgcgccaca caggcatcgt ccggtgagac ccatattcgc
     3421 tcactttaat tgactataag ggggtcgctc cttacatcgc gcgacgcaat ttccccagcg
     3481 tcggcgggag cgcttcgcct tttcctgaac gcgcgggctt ttaagggaat tccatgttcg
     3541 ccggattggc aaaaagcatc ttcggatcgg ccaacgatcg ctatgtccgc gggctcggca
     3601 aatatgtcgc cgcggtcaac ggtttcgagc ccaatatcca agcgctcact gatgacgagt
     3661 tgcgtggtca aacggacaag ctccgcgctc ggctcgcgga cggcgaaaag ctcgacgatc
     3721 tgctccccga ggcattcgcg accgtgcgtg aagcggcgat ccgcacgctc ggccagcggc
     3781 attatgacgt ccagctgatc ggcggcatcg cgcttcatcg cggcgagatc gccgagatga
     3841 agaccggcga gggcaagaca cttgttgcaa cgctcgccgt ttacctcaac gcccttgaag
     3901 ggaagggcgt ccatgtcgtc acggtaaacg actatctggc gcgacgtgac gccgactgga
     3961 tggggcagat ctaccggttt cttggaatgt ccgttggcgt gatcgttcca aatctaaccg
     4021 accaggaaag gcgcgacgct tacaacgccg acatcacgta cgcgacgaac aacgagcttg
     4081 gcttcgacta tcttcgcgac aacatgaagt actcgcgcga ccagatggtg caacggccgt
     4141 tcaatttcgc gatcgtcgac gaagtcgact cgatcctcat cgacgaagca cgaacgcccc
     4201 tcattatttc cggcccgacg gatgacaaat ccgacttgta catcgccgtt gatggaatcg
     4261 taaaaagcct ccagccgtcg gattatgaaa aggacgagaa gcagaaaagt gtcgtcctta
     4321 cggaagaggg gaccgagaag gccgagcgca tgctagaggg cgctggtctg atcgagggcc
     4381 gcaaccttta cgacatcacc aacacacaag tcgtccacca cttgaaccag gcgctcaagg
     4441 ccaacgtcat gttcaagaag gacatcgatt acatcgtcaa agacggcaag atcgtcatca
     4501 tcgacgaatt caccgggcgc atgatggacg ggcgtcgctg gtcggatggc cttcaccagg
     4561 cggtcgaggc caaggaggga gttcagatcg agccagaaaa ccagacattg gcgtcgatca
     4621 cgttccagaa ctacttcagg atgtatccaa agctttccgg catgaccgga acggcgatga
     4681 ccgaagctcc tgagttcttc gacatctaca agatgaacgt ggtcgcgatc ccgaccaatg
     4741 ttcccgtcca gcggatcgac gaggacgacg aattttacaa aacgatcacc gagaaattcg
     4801 ctgcaatagc caaggaaatc aaagagaagc aggagctggg ccagccggtt cttgtcggta
     4861 ccgtttcgat cgagaagtcg gaaatgcttt ccgagtacct caaggcagaa ggcatcaggc
     4921 attcagtact gaacgcacga ttccacgagc aggaagccca catcgtggcg caagccggcc
     4981 gcctcggtgc agtgaccatt gcgacgaaca tggcgggccg cggaacggac atccagcttg
     5041 gcggcaacct cgaattccga atgcgcgacg aatattccag cctcgccgag ggtacgcctg
     5101 aatacgacca acaggcggag aaagtgcgcg ccgagattgc tgccgagaag cagcgtgtcc
     5161 ttgaagtggg cggtctctac gtcctcggga ccgaacggca cgagagccgt cgcattgaca
     5221 accagttgcg cggccgttca ggtcgtcagg gcgacccggg gctttcgaaa ttctatctaa
     5281 gcctcgatga cgatcttctt cgcatcttcg ggccacagac gatgttcgcc cggttgatga
     5341 acaagaatct cgaagatggc gaagcaatcg tcagcccgtg gatcagcaag gcgatcgaaa
     5401 ccgcgcagaa gaaggtcgag gctcggaact acgatattcg aaagcaggtc gttgagttcg
     5461 acgacgtgat gaatgaccag cgcaaggtta tttacgagca gcgcgccgac atcatggacg
     5521 ccgataacgt cagtgacgtc attcacgata tgcgcgccga gacggccgct gcgatcgttc
     5581 tcgtcaattg cccggagggc acctatcctg agcagtggaa cgtccaggag ctcaaggaca
     5641 gcatcgatgt agtgttcggc ctccagccgc caatcgacga ttggttgcaa gaagacgccg
     5701 tcgaccagga aatgatcatt gatcgtctcc ggaagctcgc tgacgagacg atggaaacca
     5761 aggtggcgga tatcgatccc gagcaatggc gcgagatcga aaagcagatg ctgatccaga
     5821 cgctcgacca tcactggaaa gagcatctcg cgacgctcga tgcactacgg caggtcattc
     5881 accttcgtag ctacgcgcag aagaagccaa ttgatgaata taagcaggaa gctttcctgc
     5941 tgtttgagcg gctgcttgtt gccattcggg aagaagtgac gcgaaccttg atgcgcgccc
     6001 agttccagtt ccagccgcca ccacttcccg agctcccgga cttcatcacg cagcacctcg
     6061 atcccttctc ggccgatgat gacagcgccg acctcgacgc tgcggcgcgc ggcatcatgc
     6121 cgacgcttcc gccgttgctt aacatcccgc aaccgccgct tccgcagcgt gatgcgtcgg
     6181 gcaacgtggt cgaagcgcca attagccgca atgcaccgtg tccgtgcggt tccggcaaga
     6241 agtataagca ttgccacggg cagccagcgt aacgcgttcc ccggtgatgc gggcgcaact
     6301 cgaccgcacc gagcttcgcc gtgcttatcg agccgacgag gagcgcgtcg actccgagcg
     6361 cgttgaggag gcacagctaa acgagcgcga acttggcgaa gcgacggcga ttgcgcgggc
     6421 gctggtcaag ggagttcgcg cgcataagcc ttctggcgtc gatgcgttcc tccacgccta
     6481 tgaccttggt tcagacgaag gcatagcaat gatgtgcctc gccgaggcat tattgcgtat
     6541 ccccgatgac catacggcca atgagctgat tgctgacaag ctctcgggtc ctgactggtc
     6601 ggagaagctt ggcagctccg actctgcttt tgtgaatgcg gcgacctttt cgcttttgct
     6661 gactggaaag gtgctcgaga gcgcgcagga taaatcgagc aactggaagt cggccctcgg
     6721 ccgagccgtc ggtcgcctcg gtgagccggt ggtacgaacg gccgttcgcg aggcgatgaa
     6781 gatcctgggc cggaacttcg tgttcggccg aacgatcagt gaagccctca aacgtgccga
     6841 gcccgagcgt cgcaaggggc tcagccatag ctttgacatg cttggcgagg ccgcgaagac
     6901 gttcgatgat gcggcgcggt attcgcaatc ctacgccaac gcgctggagg caattgcaaa
     6961 tgacgcgtcc ggcggttttc gccgttctcc cgggatctca gtcaagctca ctgctctcga
     7021 tccgcgattt gagtataccc gcgcgcgcga tgcactcgcg agggtgatcc cgatcgttcg
     7081 cgatcttgcg ctgaaggcct cgcgagcgga cgtccacttc acgattgatg ccgaagaagc
     7141 ggaccgtctt gaacttcaga tggacgtgtt cgaggcgcta cttgcggacg acgagttgtt
     7201 cgagaatggc tggggtgggc tcgggattgc aatccaggcc tatcagaagc gcgcggtgcc
     7261 gctctgtgac tgggttgtga gagcggcgcg tgcgaatgga cgcaagctca tgtgtcgcct
     7321 cgtcaaggga gccta
//
LOCUS       DASRBJ010000045         2673 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_55961,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000045 DASRBJ010000000
VERSION     DASRBJ010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2673
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55961"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..301)
                     /locus_tag="VE968_01395"
     CDS             complement(<1..301)
                     /locus_tag="VE968_01395"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HZU50509.1"
                     /translation="MQSKRAPASPRPRKTTRRPTEELKTRLHQSLARELGIKIVCGEY
                     GPGESLPGEIAASQTHRVSRNAYREAVRILAAKGLVESRQKAGTLVTERNRWNLLD"
     gene            416..1948
                     /locus_tag="VE968_01400"
     CDS             416..1948
                     /locus_tag="VE968_01400"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HZU50510.1"
                     /translation="MSTSSEIAVGASGYAAGPNGGALRRYGAYIDGAEREPASGEYFD
                     THDPYTGEVWAKVPRCGRADVDAAVSGAKKAFERWSHLRPSQRGRILRKFADAIIANA
                     DRLAEIERRDNGKLAAEVNAQVRYLGEYFHYYAGLSDKVQSAVIPTDKEGVFAYTVYE
                     AKGVVAIITPWNSPLTLTSWKLAPALAAGCTAVIKPSEFTSASMIELAAIAIDAGVPA
                     GVINVVTGFGPEVGEPLVSHPDVSHIGFTGGELAGQKIYEAAARGLKTVTLELGGKSP
                     NIVFDDADLDQAVKGVVSGIFAATGQTCQAGSRLLVQDSIHDELIRRLVDFVKDAKIG
                     DPADLSTQIGPVATRPQFEKILSYIDIAKQEGAKLAYGGNVRADIGAGQFIEPTIFTD
                     VHNRMRIAQEEVFGPVLSVIRFKDEQDAVQIGNDIAYGLAAGVWTQSLKRTMYVTEHL
                     KAGTIYVNNYRATSFTSPFGGFKRSGIGRESGPDAIKDYLDVKTVWLSSDLDVPNPFI
                     RR"
     gene            1952..>2673
                     /locus_tag="VE968_01405"
     CDS             1952..>2673
                     /locus_tag="VE968_01405"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014075451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HZU50511.1"
                     /translation="MLLQDVRVLDLTNVLAGPFCAYQLALLGAEVIKVETPRTGDLAR
                     QLGASPELSAELMGASFLAQNANKKSVTINLKSDEGKDALRRLVATADVLVENFRPGV
                     MARLAVGYDELKTVNPKLIFCAISGFGQEGPMRAAPAYDQIVQGLSGVMSITGDGESA
                     PLRVGYPVCDSIGGITAAFAIASALVRQRATGEGCFIDVSMLDSTLATMGWVVSNYLI
                     ADQQPVPMGNDNFTAAPSGAFRT"
BASE COUNT          547 a          758 c          815 g          553 t
ORIGIN      
        1 gatcgagaag attccagcgg ttgcgttcgg tgaccagtgt tccggccttc tggcggctct
       61 caaccaagcc ctttgcggca agtatccgaa ctgcctcgcg atatgcgttt cgcgaaacac
      121 ggtgtgtttg actcgccgca atctcgccgg gcaggctctc gccgggaccg tattcgccgc
      181 atacgatttt tatgccgagc tctcgcgcca gcgattgatg aagtcgcgtc tttagttctt
      241 ctgtcggacg gcgtgtcgtc ttccgtggac ggggggacgc tggtgctcgc ttggattgca
      301 tgcgcgaatc ttatggatgg ggcggcgtga tgtcgaggat aacggaagca gaagcagcct
      361 cgaaatgtga ctcgacaaag attatgtagt acaatatctg acggttaggg agagcatgtc
      421 aacttcaagt gaaatagcag ttggtgcgtc cggatatgcg gcgggaccaa acgggggcgc
      481 gttgagacgc tacggcgcat acatcgacgg cgcggagcgc gaacccgcct ccggagaata
      541 tttcgatact cacgacccct atacaggcga ggtgtgggcg aaggttccgc gctgcgggag
      601 ggcggatgtc gatgcggccg tttcgggcgc caaaaaggca tttgagcgct ggtcgcatct
      661 ccgtccgtcg caacgtggac gcattcttcg caagtttgcg gatgcaatca ttgccaatgc
      721 ggacaggctc gccgagatcg agcgccgcga caatggcaag ctcgccgccg aggtaaatgc
      781 gcaggtgcgc tatctcggcg aatatttcca ttactacgcc ggcttatccg acaaggtgca
      841 gagcgccgtc atcccgaccg acaaagaggg tgtattcgcc tataccgtct atgaagccaa
      901 gggagtggtt gcgatcatca cgccctggaa ctcgccgctc acgctaacca gctggaaact
      961 agcgcctgca ctcgccgctg gttgcacagc tgtgatcaag ccgtcggagt tcacatcggc
     1021 gtcgatgatc gagctggccg caatagcgat agatgcgggc gttcccgccg gcgtcatcaa
     1081 cgtcgtgacc ggctttggac ctgaggtcgg cgagccgttg gttagtcatc ctgacgtttc
     1141 tcatatcggc ttcacgggcg gagaactggc cgggcagaag atctatgagg ctgctgcgcg
     1201 tggcctgaag accgtgactc tcgagctcgg cggaaagtcg cccaatattg tctttgacga
     1261 tgccgatctc gaccaagcag tgaagggcgt cgtgtcgggc attttcgcgg ccacagggca
     1321 gacatgccag gcagggtcgc ggctcctcgt acaggacagc atccacgatg agctgattcg
     1381 acggctcgtc gacttcgtta aagatgcaaa gatcggcgat cccgcggacc tttcgacgca
     1441 aatcggtcca gtcgcgacaa ggccgcagtt tgagaaaatt ctttcgtata tcgacatcgc
     1501 gaaacaggag ggggccaaac tcgcctatgg cggcaatgtg cgcgccgaca ttggggctgg
     1561 ccaattcatc gagccgacga tcttcacgga tgtacacaat agaatgcgaa tagcccagga
     1621 agaggtgttc gggcctgtgc tttcggtgat ccgatttaag gacgagcagg atgccgtgca
     1681 aatcggcaac gatatcgcct atggtcttgc agcaggcgtt tggacgcaaa gtctcaagcg
     1741 cacgatgtac gttaccgagc acctcaaggc tggaacgatc tacgtcaaca attaccgcgc
     1801 gacgagtttc acgtcgccgt tcggcggctt caagcgctca ggcatcggcc gcgagtccgg
     1861 gcccgatgcc atcaaagact atctggacgt gaaaacggtt tggctttcga gcgaccttga
     1921 cgtgccgaac cccttcatca ggcgctgagc catgctcctc caagacgttc gtgtcctcga
     1981 tttgaccaac gtgcttgctg ggccattctg cgcctaccag ttggcgctgc ttggtgccga
     2041 agtcataaag gtagaaacac ctcgcactgg tgatctcgct cgacagctag gtgcctcacc
     2101 tgaacttagc gctgagctta tgggtgcttc attcctcgcg caaaatgcga acaagaaatc
     2161 agtcacgatc aacctcaagt cggatgaggg caaggacgca cttcggcgct tggttgcgac
     2221 cgctgacgtg ctcgtcgaga acttccgtcc gggcgtcatg gcccggttag ctgttggcta
     2281 cgacgaactt aagactgtga atccgaagct gatcttctgt gccatttcgg ggttcggcca
     2341 ggaagggcca atgcgcgctg cgcccgccta tgaccagatc gttcagggac tgtccggggt
     2401 catgagcatc accggcgacg gcgagagcgc gccgctgcgc gtcgggtacc ccgtctgcga
     2461 cagcatcggc ggcatcacgg cagcgttcgc gattgcgagc gcgctcgttc ggcagcgcgc
     2521 aacgggcgag ggctgcttca tcgacgtctc catgctcgac tccactctcg ccacaatggg
     2581 gtgggtcgtg tccaattacc tcatcgcgga tcagcaaccc gtaccgatgg gaaacgacaa
     2641 tttcaccgcc gcgccatcgg gggccttcag gac
//
LOCUS       DASRBJ010000046         4067 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_512902,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000046 DASRBJ010000000
VERSION     DASRBJ010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4067
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_512902"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1963)
                     /locus_tag="VE968_01410"
     CDS             complement(<1..1963)
                     /locus_tag="VE968_01410"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GH92 family glycosyl hydrolase"
                     /protein_id="HZU50512.1"
                     /translation="MIALAPIRWITAVTAFALAIPAFAAAPRDNDPASLVNPFIGTTN
                     GGNDFPGAVMPFGMVSFSPEETPLPGSRLVVAAPGGYESRSNGVRGFGLAHVSGSGCA
                     GAGGDVPIMPVTNEIKSSPSAAGAANIYTAFIDHRKEAASPGAYSVELGNGMGVELAA
                     TERTGTARFTFLAGKPANLLFRTSDTEVGSSNATIQIDVLHRTITGSVTSGNFCGYLS
                     PDRQQSYYTLYFVAVFDQDFAVGGTWVDDALKPGATKAGGGTGYGHDGFPVPGKGSGG
                     WISFDPTKAPIVTMRIGISYVDADGARANLLRENPAGQSLEETRSKARAAWNDQLGRI
                     KIRGGTGDERTVFMTALYHSLIDPSLYSDVDGRYRGMDGRVHQLAGKQRSQYANFSGW
                     DVYRSQLQLVTLLDPKVGSDIAQSLLNQASQYGGQWDRWTHLTGATGVMNGDPAAPAI
                     AAIYAFGGREFNLNDAYRSLVQAATVPTAKDLSRAGCPVMCVGERPGLDSWLKLHYLP
                     IGAPGWGSAADTLELAAADFAIAQLARVVGDRQNERRFLDRSGWWRNLVKPHSGYIEP
                     RAADGAWPAFDPASDDEFVEGSGAQYRWMVPFDAAGLFEAIGGRDKALAALDAFFHQP
                     DGGWAVTKAGPLHAELDNEPSIGSPWLYDF"
     gene            2634..>4067
                     /locus_tag="VE968_01415"
     CDS             2634..>4067
                     /locus_tag="VE968_01415"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HZU50513.1"
                     /translation="MTVGRRSARHVRRSLAAILATLALAHPATAASPNNRVRAWRQAH
                     EKAILTAFTTFLSLPNVATKLADVERNAAYIEAELKERGFATRILSAGPGTPPSVFAE
                     LDTPGAKRTILFYAHYDGQPISQKGWLINPFAPSVRTALPEAKPVDWKALARPIDPDL
                     RLYARGSGDDKASIQALISAFDALKANGIQPSVNIKLLYEGEEEQGSPHFGTIVQQNR
                     DLLKADALIMGDGPMHQSGRQMVAFGNRGIVGFALTVYGPINPLHDGHYGSFAPSPSV
                     MLARLIASLRDEDGRILIPGIYDDVTPPTAADEAAIAAMPPIEAELKQKLGLAQNIGP
                     ARLAEGYLKPTLNVRSIHVGDEGPNAANAIAPEGFASFDIRLAQGETPVRVRQLVEAD
                     LNRLGWYIVRSTPDMQTRLAHPKIVKIEWDPGASIATRTALDLPAARAVVGSIARTVG
                     YAPIELPTSGASSGIAEAVDVLRTPMIG"
BASE COUNT          816 a         1233 c         1213 g          805 t
ORIGIN      
        1 cgaaatcgta cagccacggt gagccgattg acggctcatt gtcgagctcc gcatggagcg
       61 gtcctgcttt cgtcacggcc cagccgccat cgggttggtg aaagaaggcg tcgagcgccg
      121 cgagcgcctt gtcgcgtccg ccgattgcct caaacaatcc cgcggcatca aacggaacca
      181 tccagcgata ttgagcgccg cttccttcga cgaactcatc gtccgatgcg gggtcaaaag
      241 cgggccaagc gccgtcggcc gcgcgtggtt cgatatagcc cgagtgcggc ttcacgagat
      301 tgcgccacca gcctgaccga tcaagaaacc ggcgctcgtt ctgccggtca ccgacgacgc
      361 gggcgagctg tgcgatggca aaatcggctg cagccagttc caaggtgtcg gcagccgatc
      421 cccagccggg cgcgccgatt ggcaggtagt ggagcttaag ccacgaatcg aggccgggac
      481 gctcaccgac gcacatcacc ggacatccag cgcggctgag gtcctttgcc gtaggcactg
      541 tcgccgcttg caccagcgaa cggtaagcat cgttgagatt gaactcacgg ccaccaaagg
      601 cgtagatcgc ggcaatggcc ggtgcagctg ggtcgccgtt cattacgccc gtcgcaccgg
      661 ttagatgcgt ccagcggtcc cactgcccac catattgtga cgcctggttc aagagcgact
      721 gtgcgatgtc ggagccaacc ttcgggtcga gcaacgtgac gagctggagc tgcgagcgat
      781 agacgtccca gcccgagaag ttcgcatatt gcgatcgttg cttgccggct aactgatgca
      841 ctcggccgtc catgccacgg tagcggccat ccacgtcgct atagaggctg ggatcgatca
      901 gcgaatgata tagcgccgtc atgaagacgg tacgctcgtc gcctgtcccg ccgcgaatct
      961 tgatccgccc tagttggtcg ttccacgctg cacgcgcttt tgatcgcgtt tcctcgagag
     1021 actgaccagc tggattttcg cggagaaggt tcgctcgcgc gccgtccgca tcaacatagg
     1081 aaatgccgat ccgcatggtg acgattggcg ccttggttgg atcaaagctg atccagccgc
     1141 cggagccctt cccaggaacg ggaaatccgt catgcccgta gccggttccg ccacccgctt
     1201 ttgtagcgcc cggcttcagt gcgtcatcga cccacgttcc gccaacggca aagtcctggt
     1261 cgaagactgc aacgaaatag agcgtataat aactttgctg ccgatcgggc gagagatagc
     1321 cgcagaaatt gccgctcgtg acgctgccgg tgatcgtccg atgcaggaca tcgatctgga
     1381 tcgtcgcgtt acttgaaccc acttccgtgt ccgacgttcg aaagaggagg ttcgcgggct
     1441 tgcccgctag aaaagtgaat cgcgcagtcc ctgttcgctc ggtcgccgcg agctcgacgc
     1501 ccatgccatt gccaagctcg acactataag cgccgggact cgccgcctcc tttctgtggt
     1561 cgatgaaggc cgtataaata ttcgctgcac cggctgctga tggcgaactt ttgatctcat
     1621 tcgtcacggg catgattgga acgtcgccgc cggcaccggc gcatccgctg ccggatacgt
     1681 gggccaatcc aaagccgcgg acgccgtttg agcgcgactc atagcccccg ggagccgcaa
     1741 cgacgagacg gctacccggc agcggcgttt cctccgggct gaacgacacc atgccgaatg
     1801 gcataaccgc gccgggaaaa tcgtttccgc cattggtagt gccgatgaag ggatttacga
     1861 gtgatgctgg atcattgtct ctcggcgctg cggcgaatgc tggtattgca agtgcgaatg
     1921 cggtcaccgc agtgatccat cggatcggag ctaatgcgat cattgagcga ctgctaacag
     1981 gttcgacgtg atcgggcatc ggcacgtcac tttttatgct tgcgcctttg tcggcagcgg
     2041 cgagggaaaa ttcggattct tcaggaaagt aacaagcgat tgctcggttg attatcgccc
     2101 gagaacaagg tcgcggcact ctggtgttgc gatgggatgc gaatcatcca tgccttgcac
     2161 ttcgaggtcc tcgatgcacc gtctcgcggc tgggcttagt cgctcccggt ctttccgcaa
     2221 ggttagcaca caaccatagt ggtcgccgta aaggcacttt tcgatttccg gcggaatgct
     2281 agcgccgcga ctggccgcgg ctgcattggg cgcaatcgat cctggcgatt gggatatgcc
     2341 tggttgtcca ctcatcgagc tcaaggttgc tactgctaac ccgatagcca gcctcattgc
     2401 gccctctcgc gcctgaaacc aagtggaacg atatgtccga cgacggcgcc cgtccagtgc
     2461 ggtgatcgct cttgaaggga gaaccgatcg gctgcgttga tgccgctccg attactcgtt
     2521 tccgctgatc aagaatatgg tcggcagcgc aattgcgatt agccatggag cgtacttgcg
     2581 tttttccttt ggatagtccc tgtttcgttc gaaacgaggc aaacggagta tccatgacag
     2641 taggtcgacg gagcgcgcgg catgttcgaa gatccctcgc agcaattctc gcaacactgg
     2701 cgctcgcgca tcctgccacg gcagcatcac ccaacaatcg tgttcgcgct tggcggcagg
     2761 cgcatgagaa agcgatcctt accgccttca caaccttcct ctcgctcccg aacgtcgcga
     2821 cgaagctcgc ggacgttgaa cggaacgcgg cttacatcga agccgagctc aaggagcgcg
     2881 gatttgcaac gcgaattctc tcagcagggc caggaacgcc gccgtccgtc ttcgcggaac
     2941 tggacacgcc cggggcgaag cggacgattc ttttctatgc ccattatgac ggccagccga
     3001 tctctcagaa aggctggctc atcaacccgt tcgcgccgtc cgtacggacc gcgcttcccg
     3061 aagcgaagcc ggtcgattgg aaggccctcg cccgaccgat agatccggac ttgcggctct
     3121 acgcgcgcgg atcgggtgac gataaagcgt cgatccaggc gctaatctcg gcctttgatg
     3181 cgctcaaggc caatgggatc cagccatccg taaacatcaa gctattatac gagggcgaag
     3241 aggagcaggg ctcgccgcat tttggaacga tcgttcaaca gaatcgcgac ctcttgaaag
     3301 ccgacgcact gatcatgggc gacggcccca tgcatcagag cggccgacaa atggtagcgt
     3361 ttggcaatcg cggcatcgtc ggctttgcgc tgacggtcta cggtccgatt aatccgctcc
     3421 acgatggcca ttatggtagt ttcgccccga gcccgtcggt tatgttagca aggctcattg
     3481 cgagcttgcg cgatgaggat ggacgaattc tcatcccggg catctatgat gatgtgacgc
     3541 cgcccacggc agcagacgag gccgcgatag cagcaatgcc gccgatagag gctgaactta
     3601 agcagaaact cggcttggcc caaaatatcg ggccggcgcg gctcgccgaa ggttatctca
     3661 agccgacgtt gaacgtgcgc tcaatccacg tcggcgacga aggaccgaac gctgcaaatg
     3721 caattgctcc cgaggggttc gcttcgttcg acatccgcct cgcccagggc gaaacgccgg
     3781 ttcgcgtgcg tcagctcgtc gaagcggact tgaacaggtt gggttggtac atcgtgcgaa
     3841 gcacgcccga catgcaaacg cgcttggcgc acccaaaaat cgtgaagatc gagtgggacc
     3901 ccggcgcgtc cattgcaaca aggacggcgc tcgacctgcc cgcggcgagg gctgtcgtgg
     3961 gctccattgc gcggaccgtc ggttatgcac cgatcgagct gccaacttcg ggagccagct
     4021 ccggcattgc cgaagccgtg gacgtcttgc gcacgccgat gattggc
//
LOCUS       DASRBJ010000047         8632 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_717850,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000047 DASRBJ010000000
VERSION     DASRBJ010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8632
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_717850"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(53..376)
                     /locus_tag="VE968_01420"
     CDS             complement(53..376)
                     /locus_tag="VE968_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017184621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HZU50514.1"
                     /translation="MPDFDEIMKMAQNAQNELQKAQDNLDRIEVEGLAGGGMVKVRAT
                     AKGRILAVDIDETLLQPSEKTMVEDLVAAAINDARAKADAAAAGEMQKMQSSLPLPPG
                     FKLPF"
     gene            complement(387..2018)
                     /locus_tag="VE968_01425"
     CDS             complement(387..2018)
                     /locus_tag="VE968_01425"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003044453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HZU50515.1"
                     /translation="MDDFESPGLGLDTPEQPQKAVSGSAYRVLARKYRPQTFSQLIGQ
                     DAMVKTLANAIERGRIAHAFLLTGVRGVGKTSTARLIAKALNCIGPNGDGGPTISPCN
                     VCEPCRAIAEGRHIDVIEMDAASHTGIDDIREIIDAVRYASVSARYKIYIIDEVHMLS
                     KAAFNALLKTLEEPPEHVKFLFATTEVNKVPVTVLSRCQRFDLRRIPAEKLAGHFAEV
                     SRAEEVNVDPEALAMIARAAEGSARDGLSILDQAIAHGAGTVTAEQVRDMLGLADRGR
                     IRDLLQLVLTGDSNGALIALDEAHSLGIDPAQLLRGLMESLHSATRAKAGAKADALQS
                     AEERETASAMARQLSWSTIHRLWQMLLKGLQDVAVAPDPREAAEMALLRLIHAAELPD
                     PASLIEKLSGNSALEAASLTPKPTASGAVSRLPSDFAGLVQALEQSGKHLLAQQLHDQ
                     VGLVRYAPPELVLKPMRPLGPDWSRDLATALKSATGATWQVSLSNEAGEPSLLDQEKI
                     AAERVRADVLNDPNVRAVMDAFPGSELETYPNRGA"
     gene            complement(2134..2228)
                     /gene="ffs"
                     /locus_tag="VE968_01430"
     ncRNA           complement(2134..2228)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VE968_01430"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            2324..3052
                     /locus_tag="VE968_01435"
     CDS             2324..3052
                     /locus_tag="VE968_01435"
                     /inference="COORDINATES: protein motif:HMM:NF024600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EF-hand domain-containing protein"
                     /protein_id="HZU50516.1"
                     /translation="MNVALPLIAIAALGAKPVQEESPITVTAHPWAPFISPMGEPFRA
                     HSTSDDTLAAWFRKADRNNDGKLTVDEMVADAERFFATLDTNHDGQIDPDELNHYEWD
                     VAPEIQVNSRTRRRPGEAVPLAAANGNDEDLRGKRHRRSDDGDSALGLNGALQGAARY
                     GLLNIPEPVAAADSDFNRAISLEEFRQAAIERFRLLDTGHQGKITLEQLEVLRRQLQD
                     AAARRGHGASEWDDRLGNPVPKQP"
     gene            3126..3887
                     /locus_tag="VE968_01440"
     CDS             3126..3887
                     /locus_tag="VE968_01440"
                     /inference="COORDINATES: protein motif:HMM:NF024600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-hand domain-containing protein"
                     /protein_id="HZU50517.1"
                     /translation="MVLASMLLSLAQMSSAVPAAHAPVAPVSGPRHPRRLFISPMGEP
                     FRSKSRDDDTLADWFEQADRNHDGRLTMEEMQQDAERFFALLDVNHDGEIDPDEITRY
                     ENVIAPEIRTTERFAFASLDSGTQESSGGRHEGRGGGRGGGGHRRGGGDDAGRSPHFV
                     RGGEDPHQGAGKYGLLDLPEPVVAADADFNRGVSLAEFRQAADQRFLALDLDHKGYLT
                     LADVERIRPAPPPAPNAPEKSKEVDESALPPEPQL"
     gene            complement(3884..4219)
                     /locus_tag="VE968_01445"
     CDS             complement(3884..4219)
                     /locus_tag="VE968_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HZU50518.1"
                     /translation="MIRVRFLRADGSLDKEVDAAPGQRLLDVAWSAREPLEGACEGVM
                     ACSTCHVIVDNSDFEELPPPSEEEEDLLDLASHATRTSRLACQIILTDEMKSLTVRIP
                     PEARNWMGR"
     gene            complement(4216..5376)
                     /locus_tag="VE968_01450"
     CDS             complement(4216..5376)
                     /locus_tag="VE968_01450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase family protein"
                     /protein_id="HZU50519.1"
                     /translation="MVPHCGPGEADGGVIYLDYQATTPVAPEVASAMQPWIEERFANP
                     HSPSRWGHEAAAAIEFARKQIEKALGFKGGGIAFTGSATEAINWALKGTVEKERGNGR
                     SRVITLATEHAAVLDSCEWLAEQGVDLTVLPVQSNGRLDLDLLARELDERVLLVSVMM
                     VNNEIGVTQSISEIADMAHRNGAIVFCDAVQAFGRLDLSTGPDLVAISAHKIHGPKGI
                     GALWMKKGKEPAALIHGGGQEQGLRSGTLSPELCVGFGAAANLANERATRDLDHVQRL
                     WTAALDSLGPRWIVNGCTQCRYHGNLNIRREGLDAARLVADLRDIAFSLGSACASGSG
                     RPSHVLRALGLDYREARSSIRLGFGRYTKHNELVEACERIAAAAVEQEKLDA"
     gene            complement(5334..6443)
                     /locus_tag="VE968_01455"
     CDS             complement(5334..6443)
                     /locus_tag="VE968_01455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HZU50520.1"
                     /translation="MAIVRKVAVLSRSGRVYLDHAATTPVLAEARVAMADALERWANP
                     SSPHADGRRVRAALDESRRLFATLLDWRHDVILTSGASEAINIAGARAKVGKRLVNPT
                     EHEAVIAAMGPDAALLRVGQNGLVDLDHLKAQLSEGPALVAVQLVNNETGVVQPIHEI
                     QALVRETGSLLLVDCAQAAGKIVLPDADFIAISSHKFGGPPGVGALLVCDLAQLEPTG
                     GQERGYRRGTENWPSLEGMVAALRTGAFMAEMPRLARLRATLEQEIEAGGGIVIARDA
                     PRIATIGAYALPELESASQLVQLDLAGISVSAGSACSSGSMKQSHVLAAMGLPSGIVR
                     SVIRVSFGPSTTERDTEQFVSEWCRIAARAKRTAA"
     gene            6526..7209
                     /locus_tag="VE968_01460"
     CDS             6526..7209
                     /locus_tag="VE968_01460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HZU50521.1"
                     /translation="MPEVIFPGPEGRLEGRFHPGTRPRAPVALILHSHPQAGGTMNNK
                     IVQLLYQTFVKRGFATLRFNFRGVGKSQGLFDNGIGELSDAASALDWVQSIHPEAETT
                     WVAGVSFGAWIGMQLLMRRPEIRGFISIAPPANMYDFSFLAPCPSSGIIIQGEADEVV
                     TPGAVQKLVDKLRTQRHITIHHDVIPGANHFFANELDLLMKSVDDYLDMRLATDPIKP
                     AIPSRSSRS"
     gene            complement(7181..7348)
                     /locus_tag="VE968_01465"
     CDS             complement(7181..7348)
                     /locus_tag="VE968_01465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50522.1"
                     /translation="MDNFSDAALAIAIIAGFLLLGGGAKLAFERQTRVRGILMMVAAL
                     VIVMNVMIWTV"
     gene            7400..7654
                     /locus_tag="VE968_01470"
     CDS             7400..7654
                     /locus_tag="VE968_01470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50523.1"
                     /translation="MGAAEQHVRLDEAFERIEETILPCIAMMLETLIDASEAVAENER
                     RFLAAELKTLAAELEELTKVVERSSPAHLEPGEYKTRNVA"
     gene            complement(7651..8592)
                     /locus_tag="VE968_01475"
     CDS             complement(7651..8592)
                     /locus_tag="VE968_01475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine dehydratase"
                     /protein_id="HZU50524.1"
                     /translation="MPTRKDVLAAAERIAAEVQQTPLIESEVDGVRVWLKCECLQTGG
                     AFKLRGAANRLLQLSEAERARGVVAFSSGNHARGVAIAARRLGMKAIIVMPADAPEVK
                     VDGTRREGAEIVLYDRRRESREEIAARIANETGATVVPSFDDPAIVAGQGTAGLEIVE
                     QLGRSPSRIVIPCGGGGLASGIALAVPDAQIVIVEPEGWDDMARSLERGEIVSVPSDA
                     PNTMCDALQTPRVSPITFGILSERNAEALSVNDGEAADAMRFAWERHGLVVEPGGAVA
                     LAALTSGKLPAQPDTVVVLSGGNVDPALHARIVGSRD"
BASE COUNT         1712 a         2686 c         2513 g         1721 t
ORIGIN      
        1 cgcctcccca aaagacccgg catcatgact caaaaatgcc ggatcgcaag ggttagaacg
       61 gcagtttgaa tcccggtgga agtggcagac tgctctgcat tttttgcatt tcgccagccg
      121 ctgcggcatc ggcttttgcc cgtgcgtcgt tgattgccgc cgcaacgagg tcctcgacca
      181 tcgtcttttc cgacggctgc aggagggttt cgtctatatc gaccgcaaga atgcgccctt
      241 tggcggtggc tcgaaccttc accatcccgc caccggccaa gccctcgacc tcgatccgat
      301 cgagattgtc ctgcgccttt tgcagttcgt tctgggcgtt ctgcgccatt ttcatgattt
      361 cgtcgaaatc aggcagttcg ggcatatcag gcgcctctat ttgggtaggt ttcaagctcg
      421 gaaccgggga acgcgtccat cacggcccgg acgttcggat cgttcaggac atccgcgcga
      481 acgcgttcag cggcaatttt ctcctgatcg agaagcgaag gttcgccagc ctcgttggac
      541 agtgatactt gccaggtcgc gccggttgct gacttcaggg ctgttgcaag atcgcgagac
      601 cagtcagggc cgagcggccg cataggtttg aggacgagct cgggcggtgc atagcgcacg
      661 agcccaacct ggtcgtggag ctgctgcgcc agcaaatgct tgccgctttg ctcaagcgcc
      721 tggaccagtc ctgcaaagtc gctcggcagc ctcgagacag cgccactggc cgtcggtttc
      781 ggcgtcaagg aagcagcttc caaggccgaa ttgccgctta gcttttcgat gagcgatgcc
      841 gggtcaggaa gttctgctgc atgaatgagt cgcaagagcg ccatttctgc cgcttcgcgc
      901 gggtccggcg ccaccgccac gtcctggagg cctttcaaca gcatctgcca aaggcggtgg
      961 atggtgctcc atgatagctg ccgggccatt gcggacgctg tttcgcgttc ctcggcgctc
     1021 tgcagggcgt cggctttcgc gccggctttt gcccgcgttg cactgtgcag gctttccatg
     1081 aggccccgca ggagctgagc cggatctatg ccgagcgagt gtgcttcatc gagcgcgatc
     1141 aaggcaccgt tcgaatcgcc cgtcagcacc agttgaagca gatcacgaat gcgaccgcgg
     1201 tcggcaagcc cgagcatgtc ccgcacttgt tcggcggtca cggttccagc gccgtgggca
     1261 atcgcctggt ccaaaatcga cagtccatcg cgcgccgagc cttcggcagc gcgggcgatc
     1321 atcgccagcg cttcagggtc gacgttaacc tcttcggcgc gcgatacctc ggcgaagtgc
     1381 ccggcaagct tttcggccgg tatccgacga aggtcgaatc gctggcagcg cgaaagcacg
     1441 gtgaccggca ccttgttcac ttcggtcgtc gcaaacagga atttcacatg ctcaggtggt
     1501 tcctcaagag tcttcagcaa cgcgttgaat gctgctttgg aaagcatgtg cacttcgtcg
     1561 atgatgtaga tcttgtaacg cgcactcacc gatgcgtagc gaacggcgtc gatgatctcg
     1621 cgaatgtcgt cgatgcccgt gtggctggcc gcatccatct cgatgacgtc gatgtgccgt
     1681 ccctccgcaa ttgcgcggca cggttcacac acattacaag ggctgatcgt cggccctcca
     1741 tccccgttgg gaccaatgca gttgagtgcc ttcgcaatca gccgcgccgt tgacgtcttg
     1801 ccgacgcccc gcacgccggt gagaagaaag gcatgcgcta ttcggccgcg ttcgatggca
     1861 ttggcgagcg tcttcaccat cgcgtcctgg ccgatcaact gagagaaagt ctgcgggcga
     1921 tatttgcgag cgaggacacg gtacgctgag ccgcttaccg ccttttgggg ctgttcaggg
     1981 gtgtcgaggc cgagaccagg cgattcgaag tcgtccattg ccgatcgttt aggatgtttc
     2041 gcgatcaccg caaaagccaa cctcgaacaa ttcgcgctgg agctctcgct gatggcaagc
     2101 cccgtttgta gggggcaatt cgacaacctg gaaggaggtg gaagccgacg acccggcacg
     2161 aaatcgttgt ggctgcttcc ttccggacct gaccaggttg gcgacaatgc cgtccgccga
     2221 cttccgaacg cgcatatggg ataacgagtt cgcgcgcgca agttgctcgc gcgccctgcc
     2281 ttcattggtc gttcagggtg atcggcgaag gcccttcgac ctaatgaatg tcgcgcttcc
     2341 tctaattgcg attgccgcac tcggcgccaa gcccgttcag gaagagtcgc caatcacggt
     2401 gaccgcgcac ccgtgggcgc cgttcatcag tcccatgggc gagccattcc gagcccattc
     2461 gaccagcgac gacacgctcg ccgcatggtt tcggaaggcc gatcgaaaca acgatgggaa
     2521 acttacggtc gacgagatgg tcgccgacgc ggagcgcttc tttgcaacgc tcgacacaaa
     2581 tcacgacggc caaatcgacc cggacgaact caaccattac gaatgggacg ttgcgcccga
     2641 aatccaggtg aactctcgaa cgaggcgacg tcccggcgag gccgtcccgc tcgcggccgc
     2701 gaatggcaat gacgaggatt tgcgcggtaa gcgccaccgg cgcagcgacg acggcgactc
     2761 ggcgctcggg ctgaacggtg cgcttcaagg agccgctcgt tacgggcttc tcaatatccc
     2821 ggaacccgtc gcggcggccg attcagactt caatcgagca atttctctcg aggagttcag
     2881 gcaagcggcg atcgagcgat ttcggcttct cgacaccggg catcagggaa agatcacgct
     2941 cgaacaactg gaggtcttgc gtcgacagtt gcaggatgca gccgctcgtc gtggacatgg
     3001 cgcgtccgag tgggacgatc gcctcggtaa ccccgtcccg aagcagccgt aagtaggaca
     3061 aacattgcag cgattcacaa tctggttcac ctgagagcaa ggtttgcgag cgcttcattt
     3121 ccgccatggt tctagcatca atgctccttt cgttggccca gatgtccagc gccgtgcctg
     3181 ccgctcatgc acccgtcgca cctgtgtccg ggccgcgcca tccgcgacgt ctattcatca
     3241 gcccaatggg cgagccattt cggtcgaagt cccgcgacga cgacacactt gccgactggt
     3301 tcgagcaggc tgacaggaac catgatggtc ggctgacgat ggaggagatg cagcaggacg
     3361 ccgagcggtt tttcgccttg cttgacgtca accatgacgg cgaaatcgat cccgacgaaa
     3421 tcacgcgcta cgagaacgtc atcgctccag agattcgtac caccgagcgt ttcgccttcg
     3481 cgtcgctcga tagtggaacg caggaaagtt ccggcggtcg ccatgaaggt cgagggggtg
     3541 gacgtggcgg tggcggtcat cgccgaggcg gcggggacga cgccggtcga tcgccgcatt
     3601 tcgtgcgtgg gggcgaggat cctcaccagg gtgctggcaa atatggtttg ctcgacttgc
     3661 ccgaacccgt ggtcgccgcg gacgccgact tcaatcgcgg cgtctcactt gccgagttcc
     3721 gccaagcagc ggaccagcgc ttccttgcgc tcgatcttga tcataagggt tacctgacac
     3781 ttgccgacgt cgagagaata aggccggcgc cgccgcctgc tccgaacgca cctgagaagt
     3841 ccaaagaggt tgatgaaagc gctcttcccc ctgagcccca gctttagcga cccatccagt
     3901 ttctcgcttc gggcgggatc cgaacggtca gtgacttcat ctcgtcagtg agtatgatct
     3961 ggcaggcaag ccgggatgtg cgtgtcgcat gtgatgcgag gtcgagaagg tcctcctcct
     4021 cctcgctcgg cggcggaagt tcctcaaaat cactattgtc gacaatgacg tggcaagtcg
     4081 aacaggccat gactccctcg catgccccct cgagcggttc gcgcgcggac catgcaacgt
     4141 cgagcagccg ctgaccgggc gctgcgtcca cttccttgtc gagactaccg tcggcccgca
     4201 aaaaacgtac tcggatcacg cgtcgagctt ctcctgctcg acggcggctg ccgcgatgcg
     4261 ctcacaggcc tcaacaagct cattgtgctt cgtgtatcga ccaaatccga ggcggatcga
     4321 ggagcgggct tcgcgatagt caagcccaag tgcccgaagc acatggctcg ggcgcccgga
     4381 accgctcgcg caagcactgc cgagcgaaaa agcaatgtcg cgaagatcgg caactagtcg
     4441 cgccgcatca aggccttccc gccgaatatt taagtttcca tggtaacggc attgggtgca
     4501 tccgttgact atccaacggg ggcccaatga gtccagtgcc gcggtccaca gacgctggac
     4561 atgatcaagg tcgcgcgttg ctcgctcgtt agcgagattt gcggcagcgc cgaaaccgac
     4621 gcatagttcg ggcgacagag tgcccgaccg aagcccctgc tcttggccgc ccccatggat
     4681 aagtgcggcc ggttccttgc cctttttcat ccacaaggca ccgatcccct ttgggccgtg
     4741 aatcttgtgc gccgagatcg cgaccaggtc cggaccggtc gagaggtcca agcggccaaa
     4801 ggcctggacc gcgtcgcaga agacaatggc gccgttgcga tgggccatgt cggcaatttc
     4861 cgagatcgac tgggtgacgc cgatttcgtt attcaccatc atcaccgaga ctagcaggac
     4921 tcgctcatcg agctcgcgag caagcagatc aagatccagg cgcccgttcg attgtactgg
     4981 aagaacggtt agatcgacgc cttgctccgc aagccactcg caactgtcga gcacggcagc
     5041 atgctcggtt gcaagggtga ttactcggga tcgaccgttg ccacgctctt tctcaaccgt
     5101 acctttgagt gcccagttaa tggcttcggt ggcactgccg gtgaaggcaa tgccacctcc
     5161 cttgaaaccg agcgcctttt cgatctgctt acgggcgaat tcgatggcgg cagccgcctc
     5221 atgtccccag cgtgagggag aatgaggatt ggcaaatcgt tcctcgatcc acggctgcat
     5281 cgcacttgcg acctcgggag caacgggcgt cgttgcttgg taatcgagat agatcacgcc
     5341 gccgtccgct tcgcccgggc cgcaatgcgg caccactcag aaacgaattg ttccgtatcg
     5401 cgctcagtcg tcgaaggacc aaagctcacc cttatcaccg agcgcactat cccgctgggc
     5461 aaacccatgg ccgcaagtac gtggctttgt ttcatcgatc ccgacgaaca ggcacttccc
     5521 gccgataccg aaatgcctgc aagatccagc tgtaccagct gacttgcact ttcgagctcg
     5581 ggcaatgcgt aggcaccgat cgttgcaatg cgaggtgcgt cgcgcgcgat gacaatgccg
     5641 ccgccggcct cgatctcttg ctcaagtgtt gcacgcaacc gtgcaagacg gggcatttcc
     5701 gccatgaacg caccggttcg caatgcggca accattcctt cgagcgacgg ccaattctcg
     5761 gttccacgac gatagccacg ctcctggccg ccggttggct caagttgtgc gagatcacaa
     5821 acgaggagcg ctccaacgcc tggcgggccg ccgaacttgt ggcttgatat cgcgatgaaa
     5881 tctgcgtcgg gaagaacgat cttgccggct gcctgagcgc agtcaacgag cagcaatgat
     5941 cctgtttccc gtactagagc ctggatttcg tggatcggct ggacgacacc cgtttcattg
     6001 ttcacgagct gcaccgcaac cagtgccgga ccttccgaca gctgcgcttt taaatgatcg
     6061 aggtcgacaa gaccgttttg cccgacccga agaagcgcgg cgtccggtcc catcgcagcg
     6121 attacggcct catgctcggt cgggttaacg agccgcttgc cgaccttcgc gcgcgcaccg
     6181 gcgatgttga tcgcttcgct cgcccccgac gtgagaatga cgtcatgccg ccagtccagc
     6241 aacgtcgcga acaaccgacg cgattcgtcg agcgctgctc gtaccctgcg tccgtccgcg
     6301 tgcggcgaac ttggatttgc ccatcgttcg agggcgtcgg ccatcgccac tcgtgcttct
     6361 gcaagaacgg gcgtcgttgc ggcatggtcg agatagactc ttccacttcg gctcaaaacg
     6421 gccactttcc tgacaattgc cacatgattg ctcgtcccta tataggagcg taggccgctg
     6481 cgcacccgtg cagcggcacc ttagtttaag agcaccatcg ctttcatgcc cgaagtcatt
     6541 tttcctggac ccgagggacg cctcgaagga cgtttccacc ccggcactcg accgcgagcg
     6601 cctgtagccc tcatcctgca ctcgcatcca caagcgggcg gcacgatgaa caacaagatc
     6661 gtgcagcttc tctaccagac cttcgtgaaa cgaggctttg cgactctgag gttcaatttt
     6721 cgcggtgtcg gcaagagcca ggggctgttc gacaacggca ttggcgaatt gagcgacgct
     6781 gcgagtgcac ttgactgggt acaatcgatc caccccgaag cggaaaccac ctgggtcgcg
     6841 ggtgtaagtt ttggcgcctg gataggcatg caactgttga tgcgccggcc cgagattcgc
     6901 ggattcattt cgatcgcgcc tccagccaac atgtatgatt tcagctttct cgcaccttgt
     6961 ccctcgtccg gaatcatcat tcagggcgaa gccgacgaag tcgtcactcc aggcgccgtt
     7021 cagaagctcg tcgacaagtt gcgaactcag cgccacatca ccatccacca tgacgtgatc
     7081 cccggcgcga atcacttctt cgcgaacgag cttgatctgc tcatgaaatc ggtcgacgat
     7141 tatctcgaca tgcggctggc gacggatccc atcaaaccgg ctataccgtc cagatcatca
     7201 cgttcatgac gatgacgagg gccgcgacca tcatgagaat gcctcgcacc ctcgtctgac
     7261 gctcgaacgc gagcttggct ccgccaccga gaagcaggaa tccggcgatt attgcgattg
     7321 caagcgcagc gtccgagaaa ttatccatcc acccgtacga tttcacaaag acttaaccaa
     7381 agttgagcga catggatgca tgggcgcagc cgagcagcat gtacgtctcg atgaggcgtt
     7441 tgagcggatc gaggaaacga tcttgccgtg catagcaatg atgcttgaga cgctcattga
     7501 tgcctccgaa gcggttgccg agaacgaacg ccgctttctt gccgccgaac tcaagacgct
     7561 cgcggctgag ctcgaagaac tgacgaaggt cgtcgaacgc tcaagcccgg cacatcttga
     7621 gcccggcgaa tataaaacgc ggaacgtcgc ctagtcacgc gagccgacaa tccgcgcgtg
     7681 gagcgctggg tcaacattgc ctcccgaaag aaccacgact gtgtcgggct gagcaggaag
     7741 ctttccggac gtaagcgccg cgagcgcgac cgcaccgccg ggttcaacca caagcccgtg
     7801 cctctcccaa gcaaagcgca tcgcatctgc tgcttcgccg tcgttgacgg agagcgcctc
     7861 ggcattccgc tcgctcagga ttccgaaggt aatgggcgag acacgcggcg tctgcagcgc
     7921 gtcgcacatg gtatttggag cgtccgacgg gacggacacg atctcgccac gctcaagaga
     7981 acgcgccatg tcatcccatc cttctggctc gacgatgacg atctgtgcgt ctgggaccgc
     8041 cagcgcgatt ccggacgcaa gaccaccgcc gccacaaggt atgacgattc ggctcggtga
     8101 acgaccaagt tgctcgacga tttcgagtcc cgctgtgccc tgcccggcta cgattgcagg
     8161 gtcatcgaaa cttggaacga ccgttgcgcc agtctcattt gcgatgcgcg cggcgatctc
     8221 ctcgcgactt tcgcgccggc ggtcataaag gacgatctct gctccctcgc ggcgggtgcc
     8281 gtccactttt acctcgggag cgtcagcggg catcacaatg atcgccttca tgccgagacg
     8341 ccgcgcagca attgcaacac cgcgcgcatg attgccggaa gaaaaggcaa caactcctcg
     8401 agcccgctcg gcttccgaca actgcaagag gcggttggcg gcaccgcgaa gcttaaacgc
     8461 gccaccggtc tgaagacact cgcacttgag ccagactcgc acgccgtcga cctcactttc
     8521 gataagcggc gtttgctgca cttcggcggc aattcgttcg gcggcagcca gtacatcctt
     8581 tcgagttggc acagggattc cttttaactt gttgataaat cgccgtttcg at
//
LOCUS       DASRBJ010000048         3112 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_717880,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000048 DASRBJ010000000
VERSION     DASRBJ010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3112
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_717880"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..504)
                     /locus_tag="VE968_01480"
     CDS             complement(106..504)
                     /locus_tag="VE968_01480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013041453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system Fe-S cluster assembly regulator"
                     /protein_id="HZU50525.1"
                     /translation="MRLTHLADYAVVLMTAAARRPLTARLSATELASETGVPLPTAQK
                     LMGQLASYGLLRSARGVGGGFSLAKAASDISLADIVEAVEGPIAMTVCSDGRTICALD
                     AHCRVKPHMGVVGNAVRGALGAVRLTELAR"
     gene            572..1621
                     /locus_tag="VE968_01485"
     CDS             572..1621
                     /locus_tag="VE968_01485"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013834516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HZU50526.1"
                     /translation="MVRFYPLLRPLAFAMDPERAHRHTINLLRLVPPQRPPSFSQSLK
                     IRVAGIDFPTPIGLAAGFDKDAEVPRQMLALGFGFVEVGTLTPRAQQGNATPRLFRLK
                     EDRAVINRMGFNNQGQAEAYSRLRQIPHLRGIVGVNVGANKDSVDRIDDYLGGLRAMA
                     PVSHYLTINISSPNTPGLRGLQDESALRELLASVEQLRLKKPVFLKVAPDLDARDSER
                     IVRSALDHKIDAIIVSNTTVSRPPLKSPFASEAGGLSGVPLRQLALNCLRNFRRASGG
                     EMPLIGAGGISTAKDAFERIRAGASLVQLYTAMVYEGPAIAKRITNELAQIIAREGFA
                     NIAEAVGAEKASGEA"
     gene            complement(1605..>3112)
                     /locus_tag="VE968_01490"
     CDS             complement(1605..>3112)
                     /locus_tag="VE968_01490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003052823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="gamma-glutamyltransferase family protein"
                     /protein_id="HZU50527.1"
                     /translation="LALVEPQSSSVAGGAFMTYFDARTGKTTVYDGREVAPAQAASTM
                     FLDGAGKPLPFNTAVLSGRATGVPGVLKMLELAHREHGKLPWNSLFGDAERTADQGFI
                     VSPRLARMIHGHYAENSAPDVRRYFSKPDGSLLNAGDMLVNKPYAEFLRRLASNGVAA
                     LYAGSTAAKIVARTHDAPLGGTMTLADLSKYRPIKREALCGPFNIYLLCTTPPPGSGV
                     GLIQLMMILDRTDIARRGPGDAQAWYLFAEASRLMDAGRDKFVGDPAFVDVPVRGMID
                     RAYVDSRAALIGPAAGPPPSAGTPPGARLAGADATIDPTGTTHLIVRDAQGNVVSMTT
                     TVESIFGTGRMVDGFFLNNQLTDFSFSPTDEKGRPVANAVRAGKRPRSSMVPSILLTR
                     DRRFAGAIGSAGGNAILAYVAKCLVAAVDWHEPMSKALADPNLVARGSNFQGEVGKFS
                     PAVLAGLRQRGIDLRPGQGEDSGVTAVLVRGGKIDGAADPRREGVVLTLPR"
BASE COUNT          650 a          942 c          930 g          590 t
ORIGIN      
        1 gccctctggg agcaaattcc tgctcgacgt cggacacgaa gccccactca taatcggcga
       61 gcttctcggc ggcttcatga gcctcgcgat ttcgaaccgt gtcagtcaac gtgcgagctc
      121 cgttagcctg acggcgccaa gagcaccgcg gacggcgttg ccaaccacac ccatgtgcgg
      181 ctttactcgg cagtgggcat caagcgcaca gattgtgcga ccgtccgagc aaacagtcat
      241 cgcgattggg ccttcgacgg cctccacaat atccgcaagg ctgatgtcgc ttgccgcttt
      301 cgcaagcgaa aagccgccac ccacgccccg cgcgcttcgc aatagtccat acgaggctag
      361 ttgccccatg agcttctgtg ccgtcggaag aggaacaccg gtctcggaag caagctcagt
      421 cgcgctaagt ctcgccgtta aaggccgacg cgcggcggca gtcattagaa cgaccgcgta
      481 atcggcgagg tgagtgaggc gcataatagt taattcggag ctttccagtc ggatttagtt
      541 tgacaacggg ccagttgcaa ggcggaacgc aatggtgcgt ttttatccgc tccttcgccc
      601 cttggcattt gcgatggacc cggaacgtgc ccaccgccac acaatcaacc ttctccggct
      661 agttccaccg caaaggccgc ccagtttctc acaatcacta aaaatccgtg tcgcggggat
      721 cgacttcccc accccaatcg gcctcgcggc gggctttgac aaggatgccg aagtcccgcg
      781 gcagatgctt gcgttgggct ttgggtttgt agaagtcggc acgctaacgc cccgcgccca
      841 gcaaggtaat gcgacaccgc gccttttccg cctcaaggaa gatcgcgccg tgatcaatcg
      901 catggggttt aacaaccaag gacaggcgga agcttattca aggctgagac agatcccaca
      961 cctccgtggc atcgttggcg ttaacgttgg tgcgaacaag gatagtgttg atcgcatcga
     1021 cgattaccta ggcggcttgc gagcgatggc accagtaagc cactatctta cgatcaacat
     1081 cagctcgcct aacactcccg gtcttcgcgg gctgcaggac gagagtgcac ttcgcgaact
     1141 ccttgcgtcc gttgaacagc ttcgactgaa gaagcccgtc ttcctcaagg tcgctcccga
     1201 tctcgatgcg agggactcgg aacgcattgt ccgttccgcc ctcgaccaca agatcgatgc
     1261 aatcatcgtg tccaacacga ctgtctcgcg accgccgctg aagtcgccgt tcgcgagcga
     1321 agcaggaggc ttgtcgggcg ttccgctaag acaactggct ctaaactgtc tgcgcaattt
     1381 ccgtcgtgcg agtggcggag aaatgccgtt gatcggcgca ggcggcatct ccacagcaaa
     1441 ggacgcattc gagcggatcc gtgccggagc aagcctggtg cagctctaca ccgcgatggt
     1501 ttacgaaggc ccggccatag cgaagcggat caccaacgag ctcgcgcaga ttatcgcgcg
     1561 cgagggattc gccaatatcg ccgaggccgt cggggccgaa aaagctagcg gggaagcgta
     1621 agcaccacgc cttcgcgccg tggatcggca gcgccatcaa ttttcccacc gcgcacgagt
     1681 acggccgtca cgcccgaatc ctcgccctgg ccaggcctca gatcgattcc acgttgacga
     1741 agaccagcga gcacagcagg cgaaaatttg ccaacctcgc cctgaaaatt ggatccgcga
     1801 gcgaccagat tgggatcggc aagtgccttg ctcatcggtt catgccaatc aaccgcggcg
     1861 acgaggcatt ttgcgacgta ggcgagaatc gcatttccac ccgcggatcc gattgctccg
     1921 gcaaatcgtc tgtcacgcgt caagaggatc gatgggacca tcgacgagcg ggggcgcttg
     1981 ccggctctca cggcattggc gaccggtcgg cccttctcgt ctgtgggact gaatgaaaaa
     2041 tcggtgagct ggttgttgag gaagaagccg tcaaccatcc ggccggtccc gaaaatgctc
     2101 tcgacggttg ttgtcatcga gacgacgttt ccttgcgcgt cgcgcacgat gagatgtgtc
     2161 gttccggtag gatcgatcgt tgcgtccgct ccggcaaggc gtgcaccagg gggcgttccg
     2221 gcgcttggtg gtggtccggc agcgggaccg atcaacgcgg cacgggaatc aacataagcg
     2281 cgatcgatca tcccgcggac aggaacgtca acgaaagcgg gatcgccaac gaacttgtcg
     2341 cgaccggcgt ccatcagccg actcgcctcg gcaaaaaggt accaagcttg agcgtcgccg
     2401 ggtcccctcc gcgcaatgtc ggttcgatcg aggatcatca taagttgaat aagtccgacg
     2461 ccgcttccag gcggcggcgt cgtgcacaag agataaatat taaacggccc gcaaagcgct
     2521 tcgcgcttga tggggcgata tttcgaaaga tcggctaggg tcatcgtccc gccgagcggt
     2581 gcgtcatgcg ttcgggcaac gatcttggcg gcggtggagc ccgcgtagag cgctgctact
     2641 ccattcgacg cgagacgccg aaggaattcg gcgtacggct tgtttacaag catgtcgccg
     2701 gcattgagaa gggatccgtc gggcttcgag aaatagcgac gaacgtccgg cgcgctattt
     2761 tccgcataat gcccgtggat catgcgcgcg agccgagggg agacaatgaa gccttggtcg
     2821 gcggtcctct cggcgtcgcc aaaaagactg ttccagggca gcttgccatg ctcgcgatgg
     2881 gcaagttcga gcatcttgag gacgccgggt acgcccgtcg cacgaccgct caagaccgcg
     2941 gtattgaacg gcaatggctt gcccgcgccg tcgaggaaca tcgtggaagc ggcctgcgcc
     3001 ggtgcgactt cccgcccgtc atagacggtt gtttttccgg ttcgggcatc gaaataggtc
     3061 atgaaggcgc cgccggcgac gctcgaactt tgcggttcga caagcgcaag ca
//
LOCUS       DASRBJ010000049         3564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_56424,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000049 DASRBJ010000000
VERSION     DASRBJ010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3564
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56424"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..830
                     /locus_tag="VE968_01495"
     CDS             <1..830
                     /locus_tag="VE968_01495"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004212090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HZU50528.1"
                     /translation="LDQNLFRLMREGPDDELKLTQNAQPAIMAHSLAVMRVLTSDAGI
                     DLKKHASFVAGHSLGEYSALCAAGSFDLVTTARLLRTRGAAMQQAVPDGQGAMAALLG
                     SDLALAKKIAERAAQGQVCSVANDNDPSQVVISGAKEAIDRAVQIAKEMGAKRAILLP
                     VSAPFHCALMKPAADVMADALGAVTLDRPVVPLFANVTAEPTSDPDTIRSQLVDQVTG
                     MVRWRESIANIADSGVEEFIEIGAKVLGAMVKRIVPNAKVTSVTSIEEIEALAKEIA"
     gene            831..1571
                     /gene="fabG"
                     /locus_tag="VE968_01500"
     CDS             831..1571
                     /gene="fabG"
                     /locus_tag="VE968_01500"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004212094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HZU50529.1"
                     /translation="MFDLSGMTALVTGASGGLGSSIAKALARQGARLALSGSNVEKLD
                     AFVGTLGGEHVAVPCNLSDASAVDQLVPQALDALGGRLDILVNNAGVTRDNLLMRMKD
                     EEFEEVIKVNVEAAFRLMRAAAKPMMKARFGRIISISSVVGVTGNPGQANYVASKAAL
                     IGMGKAVAQELATRGVTVNAIAPGFMSSPMTDALNEQQRSSILARIPMGVMGAGEDIG
                     AACVFLASREAGYVTGQTLHVNGGMLMP"
     gene            1767..>3564
                     /gene="dnaK"
                     /locus_tag="VE968_01505"
     CDS             1767..>3564
                     /gene="dnaK"
                     /locus_tag="VE968_01505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011445702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HZU50530.1"
                     /translation="MAKVIGIDLGTTNSCVAVMEGGKPKVIENSEGARTTPSVVAFTK
                     DGERLIGQPAKRQAVTNPDNTIFAVKRLIGRRFDDPITKKDTELVPYKIVRGSNGDAW
                     VEAGGKDYSPSQISAFILQKMKETAEAYLGETVAQAVITVPAYFNDAQRQATKDAGQI
                     AGLEVLRIINEPTAAALAYGLEKEDGKTIAVYDLGGGTFDVSILEIGDGVFEVKSTNG
                     DTFLGGEDFDARIVNWLADRFKAKEGIDLRTDRLALQRLKEAAEKAKIELSSAATTEI
                     NQPFITARMEGGTTTPLHLVETISRADLEKLVDDLIERTIEPCRKALKDAGVDAKDIH
                     DVVLVGGMTRMPRVRERVKEFFGKDPHTGVNPDEVVAMGAAIQAGVLQGDVKDVLLLD
                     VTPLSLGIETLGGVFTRMIDRNTTIPTKKSQVFSTAEDNQNAVTIRVFQGEREMAADN
                     KLLGQFDLVGIPPAPRGVPQIEVTFDIDANGIVNVSAKDKGTGKEQQIRIQASGGLSD
                     NDIEKMVREAEQFAEDDKKRRAAAEAKNNAESLIHSTEKQLAEHGDKVSPDVKSEIEK
                     AIAEAKTAVESGNADDMQQKTSALTQAAMKLGE"
BASE COUNT          784 a         1001 c         1109 g          670 t
ORIGIN      
        1 ccctggacca gaatcttttc cggctgatgc gcgaggggcc cgatgacgag cttaagctta
       61 cccaaaatgc gcagcccgcg atcatggcgc actcgcttgc ggtcatgcgt gtgctcactt
      121 ccgacgccgg catcgatctc aagaagcacg caagcttcgt cgccggccac agtctcggcg
      181 aatattcggc gttgtgcgcg gccggctcct ttgatctcgt gacgaccgca aggcttctgc
      241 gcacgcgcgg cgcggcgatg caacaggctg tgcccgatgg acaaggtgcg atggccgcgc
      301 ttcttggttc cgatctcgca cttgccaaga agatcgcgga acgtgccgcc caagggcagg
      361 tgtgcagcgt cgcgaacgac aacgatccct cgcaggtcgt gatctccggc gcgaaggagg
      421 caatcgatcg cgccgttcag atcgcaaagg agatgggagc aaagcgggcc attctcttgc
      481 ccgtatcggc gcctttccac tgtgcgctga tgaaacctgc cgccgatgta atggccgacg
      541 ccctcggagc agtgacctta gaccgtcccg tcgtcccgct gtttgcaaat gttaccgccg
      601 agccgacgag cgatcccgat acgatacgta gccagttggt cgatcaggtg acgggcatgg
      661 ttcgctggcg cgaaagtatt gccaacatcg ctgactcggg tgtcgaggag ttcatcgaaa
      721 taggcgcaaa ggtgcttggg gccatggtga aacgtatcgt tcccaatgca aaggtgacga
      781 gcgtcacctc gatcgaggag attgaggctc tcgccaagga gatcgcataa atgttcgacc
      841 tttcaggcat gactgctctt gtaacgggcg cgtcgggcgg ccttggcagt tcgatcgcga
      901 aagctcttgc gcgacagggc gctcggctcg cgctctcggg cagcaacgtc gaaaagcttg
      961 atgcgtttgt cgggacactt ggtggtgagc atgtcgccgt gccatgcaat ctctcggacg
     1021 cctcagcggt tgatcagctc gtgccgcaag cccttgatgc ccttggcggt cgattggaca
     1081 tccttgtcaa caatgccggc gtcacgcgtg acaaccttct gatgcggatg aaggacgagg
     1141 agttcgagga agtcatcaag gtcaacgtcg aagcggcctt tcgattgatg cgtgcggcgg
     1201 caaagccgat gatgaaagct cggttcgggc gtatcatctc gattagctcg gtcgttggcg
     1261 tgaccggcaa tccgggccaa gccaattatg ttgcatctaa ggcggcactc atcgggatgg
     1321 gcaaagcggt tgcgcaggaa cttgcgaccc gcggcgttac cgtcaatgcg attgctccag
     1381 gtttcatgtc ttcgccgatg acggacgcgc tcaatgagca gcagcgttcg agcatcctcg
     1441 cgcgtattcc gatgggggtc atgggagccg gggaggatat cggcgcggca tgcgtctttc
     1501 tcgcgtcacg agaagcgggc tatgtcaccg ggcagacact gcacgtcaac ggcgggatgc
     1561 tgatgccatg aagccgcggt gctaacgagc ttcatcatga gagcagtcgc aacgctgcga
     1621 cacccgtgaa tgcttgagca agttccaacc atggccgtgc agtccttgtc gtcgcaattg
     1681 cgccacctat atcgccatca atccaaagat ttcggttgcc tccaagaggg atcgaacaag
     1741 gggctgtaag agagaggtac aagcacatgg ccaaggtcat tgggatcgac ttgggcacga
     1801 ccaacagctg cgtcgccgtc atggaaggcg gcaagccgaa ggtcatcgag aatagcgaag
     1861 gcgcgcgaac gacgccttcc gtcgtcgctt tcaccaagga tggcgaacgt ctgattggcc
     1921 agccggcaaa gcggcaggcc gttactaatc ccgacaatac gatttttgca gtgaagcgac
     1981 tgatcggtcg ccgcttcgat gatccgatca cgaagaagga caccgagttg gtgccctaca
     2041 agatcgtgcg cggatcgaat ggcgatgcct gggtcgaagc gggcggcaag gattattcgc
     2101 cctcgcagat ctccgcgttc attcttcaga agatgaagga gactgccgag gcttatcttg
     2161 gtgaaacggt cgcacaggcg gtgattactg tccccgccta tttcaatgac gcgcagcgcc
     2221 aggcaacgaa ggatgccggc cagatcgctg gtcttgaagt gctccgcatc atcaacgagc
     2281 cgaccgctgc cgcgcttgcc tacgggcttg agaaagagga cggcaaaacg attgcggtct
     2341 atgacctcgg tggtggcacg ttcgacgtct cgattctcga gatcggcgac ggcgtcttcg
     2401 aagtgaagtc caccaacggc gacacattcc tcggcggcga ggatttcgac gcgcggatcg
     2461 tcaactggct ggcagaccga ttcaaggcaa aggaaggtat cgaccttcga acggaccgcc
     2521 ttgctcttca gcgattgaag gaagcggcgg aaaaagcgaa gatcgagctc agctccgcag
     2581 caaccacgga gatcaaccag cccttcatca cggcgaggat ggaaggtggt acgacaactc
     2641 cgctccacct cgttgaaaca atcagccgag ctgacctcga aaagctcgtc gatgatctca
     2701 tcgagaggac gatcgagcct tgccggaagg cgctcaagga cgccggcgtc gacgccaagg
     2761 acatccacga cgtggtactc gtgggcggca tgactcgcat gccgcgcgtg cgtgaacgtg
     2821 tgaaggaatt cttcggcaag gatccacaca cgggcgtcaa cccggacgag gtcgttgcaa
     2881 tgggcgcggc gatccaggcc ggtgtgttgc agggcgacgt caaggacgtg ctgctgctcg
     2941 acgttacacc actgtcgctt ggcatcgaga ctcttggcgg ggttttcacc cgtatgatcg
     3001 atcgcaatac gacgatcccc acgaagaaga gccaggtctt ttcgaccgcc gaggacaacc
     3061 agaacgcagt gaccatcagg gttttccagg gcgagcgtga aatggccgca gacaacaagc
     3121 tgcttggcca gttcgatctc gttggaatcc cgccggcacc gcgcggcgtt ccccagatcg
     3181 aggtcacgtt cgatatcgat gcgaacggca tcgtgaacgt ctcggccaag gacaagggta
     3241 ccggcaagga acagcagatc cgcatccagg cttcgggcgg tcttagcgat aacgacatcg
     3301 agaagatggt tcgcgaagct gaacagttcg ccgaggatga caagaagcgt cgcgctgcgg
     3361 cggaagcgaa gaataatgcc gagagcctta ttcattcgac cgagaagcag ctcgctgaac
     3421 atggtgacaa ggtctcgccc gatgtgaaga gcgagattga aaaggcgatc gccgaagcca
     3481 aaactgcggt cgagagtggc aacgccgacg acatgcagca gaagaccagt gctcttacgc
     3541 aggccgcaat gaagctcggc gagg
//
LOCUS       DASRBJ010000050         3144 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_513329,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000050 DASRBJ010000000
VERSION     DASRBJ010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3144
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_513329"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..649)
                     /locus_tag="VE968_01510"
     CDS             complement(<1..649)
                     /locus_tag="VE968_01510"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HZU50531.1"
                     /translation="MDARTRKQGEPDEAVVEEARTLAEAITAKRDRLLASLTLIAGIA
                     LIVLLPFALRAGAEFFMPVTAALVVAIALVPLLEWFERRGIPSKTAAGLCVILFLLLA
                     IFAIASIVMPASNWVAQVPTKIPKVRAALEPVIQLYKHLDRFIDRTVSQIAITQEHTR
                     AVTIESPNSFSSLLISSAPHLMIQLFFALLVIFFFLAGWTAMRKKTIVSRGSFEGA"
     gene            complement(735..820)
                     /locus_tag="VE968_01515"
     tRNA            complement(735..820)
                     /locus_tag="VE968_01515"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(785..787),aa:Leu,seq:caa)
     gene            951..2729
                     /locus_tag="VE968_01520"
     CDS             951..2729
                     /locus_tag="VE968_01520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020820609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-requiring protein"
                     /protein_id="HZU50532.1"
                     /translation="MNTSDFFVERLKSWGVKRIFGYSGDGINGVIGAIQRDGTIDFIQ
                     VRHEEMAAFMATADAKFSGQLAVCLATGGPGATHLLTGLYDAKLDHMPVLAICGQAET
                     NVRGASYQQELNLDRIFQDVAEYVQEVETPAQLPHVIDRAIRLAIARRGPSVVILPKN
                     VQEEPFTAPKRKHGFTRSGPGYSRPVLVPSEADLRRAADILNAGKKIAILIGAGAIHA
                     VDEVVQVAETLGAGVAKALLGKCVLPDDLPFVTGAIGLLGTKPSSDMMNACDTLLMIG
                     TGFPWSEFLPKTGDARAIQIDVDPAMLSLRYPCEVNLQGTAAETLQLLLPMLKQKSER
                     SWREEIEKGMKDWWETLESRALTSAHPVNPQRVVWEMSPRLPHNAIVTSDSGSCANWY
                     ARDYRVKRGQLASLSGGLASMGAAVPYAIGAKFAHPDRPVIALVGDGAMQMNNMAELI
                     TIHKYWERWPDKRLVTCVFNNQDLNEVTWEQRVMNGNPRFDASQDIPDVRYSKFAELI
                     GLTGIYVDNPDDLGSAWEHALSADRPVVLEVKTDPEIAPLPPHVSLKEAKNFMMSMTK
                     DEDAGHVIRDTARQVMNAVLHKEDAD"
     gene            complement(2782..>3144)
                     /locus_tag="VE968_01525"
     CDS             complement(2782..>3144)
                     /locus_tag="VE968_01525"
                     /inference="COORDINATES: protein motif:HMM:NF017470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HZU50533.1"
                     /translation="IESILGLNRMVAGVYGPLTVIVMLATIVPNLAVGVRRLHDTSRS
                     AWWLLLLVPYLISVVLMVQALMAGSPAGFGAAGLVALIGLLCCLGFLVLMVLPSSPGA
                     NRYGPNPYGEGEAAVAAE"
BASE COUNT          674 a          952 c          947 g          571 t
ORIGIN      
        1 aagcgccttc aaagctcccg cggctgacga tcgtcttctt cctcattgcc gtccagccgg
       61 caaggaagaa gaaaatgacg aggagcgcga agaaaagctg gatcatgagg tgcggcgcgg
      121 agctgatcag caggctcgaa aaagaattcg ggctttcgat cgtgaccgct cgcgtatgct
      181 cctgcgtgat cgcgatttgc gaaacggtgc ggtcaatgaa ccgatcgaga tgcttgtaga
      241 gctgaatgac cggttcgagt gcagcgcgca cctttgggat cttggtcggg acctgcgcaa
      301 cccagttgct tgccggcata acgatcgaag cgatcgcgaa aatcgcgaga agaaggaaca
      361 ggatcacgca aagaccagcg gccgtcttcg agggaatccc gcgacgctcg aaccattcaa
      421 gaagcgggac aagtgcgatc gccacaacca gtgccgcggt cactggcatg aagaattcgg
      481 cgcccgcccg caaggcaaag ggcaacagta cgataagcgc aattccggcg atcagcgtca
      541 gcgacgcgag cagtcggtcc cgctttgccg tgattgcctc cgcgagcgtt cgggcctcct
      601 cgacaactgc ctcatcgggt tcgccctgct tgcgtgtgcg cgcgtccatc gggggagcat
      661 aaccccacca gcccggaccc gccagcgatt cgcacgcatg aggagcccgg ctgaattacc
      721 gatcggcgcg cggttggtgc ccctggtccg actcgaacgg acactcccgt aaaggaactc
      781 gattttgagt cgagcgcgtc taccattccg ccacaggggc acgcgcgcct gtagctagcc
      841 ggccgtttca tcggccgcaa tgcctgctgg cggtcaagat tgctcgtgtc gacggagctt
      901 agggcacggg tcggcgtttg gccttgcatc agacatcagt gggtgcagca atgaacactt
      961 ccgatttctt cgtcgaacgg ttgaagagct ggggcgtcaa gaggatcttc ggctattctg
     1021 gtgacggtat caacggagtg atcggcgcga tccagcgcga tggaacgatc gatttcatcc
     1081 aggttcgcca cgaggaaatg gccgcgttca tggcgaccgc ggacgcgaaa ttctccgggc
     1141 agctcgcggt ttgcctcgcg accggcggtc caggcgcaac ccatcttcta acgggccttt
     1201 atgacgcgaa gctggaccac atgccggtgc ttgccatttg cggccaagcc gaaaccaacg
     1261 tccgcggagc aagctatcaa caggaactga acctcgaccg gatcttccag gacgttgccg
     1321 aatatgtgca ggaggtcgaa acgcccgctc agcttccgca cgtcatcgac cgggccattc
     1381 gactggcgat cgcccgccgt gggccctccg tcgtcattct tcccaagaac gtccaggaag
     1441 agccgttcac ggcgcccaag cgcaagcatg gctttacccg ttccggccct ggctattcgc
     1501 gtccagtcct cgttccgagc gaagcggacc tccggcgcgc ggcggacatc ctcaatgcgg
     1561 gcaagaagat tgcgatcctc attggtgccg gcgcaatcca cgccgtcgat gaagtcgtcc
     1621 aggtcgccga gacgcttggc gcgggcgtcg cgaaggcact ccttggcaaa tgtgtccttc
     1681 cggacgatct tccgttcgta accggcgcaa tcggacttct cggcacgaaa ccgagctcgg
     1741 acatgatgaa cgcctgcgac actctcctga tgatcgggac gggctttccc tggtccgagt
     1801 tcctgccgaa aaccggtgac gcccgcgcga tccagatcga cgtcgatccg gcgatgctct
     1861 cgctccgcta tccgtgtgaa gtaaaccttc aaggaactgc ggcggaaaca ctgcaactgc
     1921 tgcttccgat gctgaagcag aaaagtgagc gcagctggcg cgaagaaatc gagaaaggca
     1981 tgaaggactg gtgggagaca ctggaatcgc gagccctcac cagtgcgcat cccgtgaacc
     2041 cgcagcgggt cgtttgggaa atgtccccgc gcctgcctca caatgcaatc gtcaccagcg
     2101 acagcggctc ttgtgccaac tggtacgcta gggactatcg cgtgaagcgc ggtcagctcg
     2161 cttctttgtc gggcggcctt gcatcaatgg gtgcggcggt gccttatgcg attggcgcca
     2221 agttcgcgca tcccgatcgc cccgtcattg cgctggtcgg cgacggcgca atgcagatga
     2281 acaatatggc tgagctcatc acgatccaca aatattggga acgctggccg gacaagaggc
     2341 tcgtcacctg cgtgttcaac aaccaggatc tcaatgaagt cacctgggag cagcgggtga
     2401 tgaacggcaa tcctcgtttc gatgcgagcc aggatattcc tgacgtgcgc tattccaaat
     2461 tcgctgagct catcgggctc actggaattt acgtcgataa tcccgacgat cttggaagcg
     2521 catgggaaca cgcattgtcg gcggatcgac cggtcgtgtt ggaagtcaag acagatcccg
     2581 agatcgcacc gcttccaccg cacgtgagcc tcaaggaagc caagaatttc atgatgtcga
     2641 tgacgaagga cgaggatgcc gggcacgtca tccgcgatac ggcacgccag gtcatgaatg
     2701 ccgtccttca caaagaggac gcggactgat gagcgggcgc cgcttcaaca ggcggcgccc
     2761 tcgtctttag gcgagtccag cttactcggc ggcgacggcc gcttcgcctt caccgtaggg
     2821 atttggtcca tagcgattcg cgcctggcga gcttggcaat accatcagca cgaggaagcc
     2881 gaggcagcaa agaagaccga tgagcgcaac caggcccgcc gcgccaaacc cggcgggact
     2941 tcccgccatc agcgcctgaa ccatcaggac gaccgaaatg agatagggca cgaggaggag
     3001 cagccaccac gcgctccggc tcgtgtcatg cagacggcgc actccaaccg caagatttgg
     3061 aacgatcgtc gccagcatga cgatgaccgt caatgggccg tagacgcctg cgaccatgcg
     3121 attaagccca aggatgctct cgat
//
LOCUS       DASRBJ010000051        14095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_718290,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000051 DASRBJ010000000
VERSION     DASRBJ010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 14095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14095
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_718290"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1216)
                     /locus_tag="VE968_01530"
     CDS             complement(<1..1216)
                     /locus_tag="VE968_01530"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006793 - phosphorus metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HZU50534.1"
                     /translation="MRQAESSAIIDIGSNSVRLVVYAGPARVPAPIFNEKVLAGLGVG
                     LARSGRLPPVGRAKALAALRRFRLLIDHMNVKRTIAVATAAVRDAADGAEFIREVEQM
                     GINCQVLSAREEADLAGQGVLSGIPGAEGIVGDLGGGSLELVNLVGGEPVSGISMPLG
                     VLRLEASASGEREARKLLRSTLKGSCLTGQTSSRPFYMVGGSWRALARIDMLASEFPL
                     PITHQYQMKPGRARELRKILRDPGVKFAGATSPPRLASSPQAAMLLDVLVDELEPSEL
                     VISTYGIREGLLYSRLSTKDRRIDPLVEEAREAGGGEHRFGQHGDLLDQWIAPLFDDD
                     HPEMRRLRLASCLLADVAWQANPGFRADRGIEMALHGNWVAVTPGGRVIMAQALTANF
                     GRDRLPDDRLATL"
     gene            complement(1217..3382)
                     /locus_tag="VE968_01535"
     CDS             complement(1217..3382)
                     /locus_tag="VE968_01535"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014075831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009358 - polyphosphate kinase complex
                     [Evidence IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006799 - polyphosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HZU50535.1"
                     /translation="MDVGPDPQPAGALTAAAEVPQPEPRYFNRELSWLAFNRRVLEEA
                     CNLKHPLLERLRFLSISANNLDEFFMVRVAGLKAHQTLGVEEISPEGLTVAQQLSAIS
                     SDADRLVTSQHEVWAELQAQLDVAGMHVVEESEGLDPDAEAWLDEQFREQIFPVLTPQ
                     AIDPAHPFPFIPNKGLGLIFELKKGKTSVRELIMAPPTLPRFIRLPGDIGRYIALETL
                     IRRKTSYLFPKYEVLQGGAFRIIRDSDIEVEEEAEDLALYFRTAIKRRRRGRVVRLEL
                     EPGMPESLVNELKEGLSADTAVTSETRGFLGMTDLSQLVEEDRPDLKFPPFNPRFPER
                     VREHGGDCFAAIKEKDILVHHPYESFEVVVEFIQQAAADPDVVAIKQTLYRAGKQSAI
                     IRALIDAAEAGKSVTAVIELKARFDEEQNLMWANALERAGAQVVYGFIDWKTHAKVSM
                     VVRREEKGFRTYCHFGTGNYHPVAARIYTDLSYFTANPQIGRDAAKLFNYITGYLEPR
                     NLKQLVISPTQLRDELMKLIDAEIVNAREGKPSGIWAKMNSIVDPQIIEKLYEASAAG
                     VPIDLVVRGICCVRPGVPGLSENIHVKSIVGRFLEHARLWCFANGHSLPHAQAKVFIS
                     SADWMPRNFDRRIEYMLPIENPTVHAQLLDQVMVANLIDNEQSWRLNADGTYTRLHAT
                     PGHAFNLHDYFMSNPSLSGRGQALKKGRKVPKLRFHRGR"
     gene            3519..3869
                     /locus_tag="VE968_01540"
     CDS             3519..3869
                     /locus_tag="VE968_01540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50536.1"
                     /translation="MAKDKKKSKDKKHKKSDGAANGGKASKKAAKGFEAITQNPIVAD
                     VVAAALISMAAALKDSDKARRIASDAGDQLGELSKKSAKQGSIMWDLALDIGRRTLET
                     LAGENAQKGKPGSR"
     gene            3955..4332
                     /locus_tag="VE968_01545"
     CDS             3955..4332
                     /locus_tag="VE968_01545"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZU50537.1"
                     /translation="MIPSRRAALIVEDQPFVGMVASDILKEAGFETFHAYDAEAATQL
                     LTDHPEIEVVVTEAQLPGDVNGLELCRRVSRQRPEVQLVLTGTALELHHNDVPSGARI
                     LRKPYASGELRTLVADRALLAEA"
     gene            complement(4339..4818)
                     /locus_tag="VE968_01550"
     CDS             complement(4339..4818)
                     /locus_tag="VE968_01550"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HZU50538.1"
                     /translation="MSDVDPRPYRRGVGVMLLNSHGEVFVGARIDNTDEAWQMPQGGI
                     DAGENDPWMTALRELEEETGIPPHLVERVADCPERLKYDLPENLKSKLWGGKYKGQEQ
                     DWFLARFLGDNSDINIATKDPEFREWKWVPPRQLPELIVPFKRDLYRRLIREFAEHL"
     gene            complement(4815..5744)
                     /locus_tag="VE968_01555"
     CDS             complement(4815..5744)
                     /locus_tag="VE968_01555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HZU50539.1"
                     /translation="MREPYIRPDVRDFLAYIQTLDRPKAHLAGPDGARRMLIASRHAF
                     ETPAKKIRIGRNIEGPVPLRLYDDRPERGPGPLLVFLHGGGWVIGDLETHEPFCIDVA
                     KALDLPVVAVDYRLAPEHPFPAGLNDALAATRWIAAAPPQLERAPTALFLAGDSAGGN
                     LACVISASLRDSPAMVPIAGQWLIYPASDPEVRYPSYAEFNSGYVLTKESMDWFEDCY
                     AAPRGDWRYSPLLAGTSGLPPTFVVTAGLDPIRDQGRAYASRCAEAGVETIYLEVRGT
                     VHGFLNLRGAIPSGREDFARCMAYLKPWVEQVR"
     gene            5883..7817
                     /locus_tag="VE968_01560"
     CDS             5883..7817
                     /locus_tag="VE968_01560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HZU50540.1"
                     /translation="MATATHLLTEKEATAHPAGEAVVVRFAGDSGDGMQLTGGQFTLS
                     TALAGNDLSTFPDFPAEIRAPQGTTFGVSAFQINFGSTSIDTAGDQPDVLIAMNPAAL
                     NVNAPQVREGGLIIADEGEFTQRNLAKAGYERNPLEDGSLAKWQLVHFNISQLTLDAV
                     KPFGLGNKEALRCKNMWTLGLALWMFDRDRQPIVDWLKQKFAKAPELAEANIAALNAG
                     HAYGETVEMGAPFKQHHLAPAPAEPGLYRTVTGAESLALGLVAGCELAGLNMFFGSYP
                     ITPASPLLHHLARLKEFGITTFQAEDEIAAVCAAIGASYAGHLGVTSSSGPGIALKTE
                     AIGLAIMTELPLVVVNSQRGGPSTGLPTKTEQSDLYQAIYGRNADAPVPVLAARSPAD
                     AFECAIEACRIATRYMTPVILLTDGYIANAAEPWRVPDMSRYEPFKVSFLNAAPEGGA
                     AMPYSRNGDLARPWIRPGTAGLEHRIGGIEKAPGTGNIDYSPAVHQEMTNTRWAKVAG
                     VAKSIPDQEICLGQEGAELAVVGWGSTFGPIHQAVGRALARGLDVAHVHVRHLWPMPS
                     NMARLLKSFKHILVPEMNMGQFKTVLRDQFLVDAKSLTKVSGHPFRIAEIEAAIDGAI
                     AGGSNARAEGRPMNAPGLKQ"
     gene            7894..8907
                     /locus_tag="VE968_01565"
     CDS             7894..8907
                     /locus_tag="VE968_01565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HZU50541.1"
                     /translation="MNDITTLTTAKDWASDQEVRWCPGCGDYAVLKAVQRTMPDLGIA
                     REKTVFISGIGCSSRFPYYMASYGFHTIHGRAPAIATGVKLANPELDVWIITGDGDAL
                     SIGGNHTMHVLRRNLDCQILLFNNEIYGLTKGQYSPTSRVGTRSPSTPFGSVDRPVTP
                     CAFALGSGGRFIARGIDVHKNLPDVLKAAHAHRGASFVEIYQNCVVYNDDVFASFTER
                     TVAAEKQLWLKAGEKMLFANGTKGLALDTDRLALKVVAADDPAVLTHDPSNRQLAAML
                     ILMPQEGFPIALGVIYEDPAPTFESSVAEQNKAAASGKQPDLQALVSKGQTWMIAAEP
                     KRL"
     gene            8921..9880
                     /locus_tag="VE968_01570"
     CDS             8921..9880
                     /locus_tag="VE968_01570"
                     /inference="COORDINATES: protein motif:HMM:NF016214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HZU50542.1"
                     /translation="MDNITHTLAGALLGEMGLKRRSRFAMAACLLGANAPDLDVFAPL
                     VLPVDGIEFHRGPMHAVFAWPVLAAGIVALLWLVDRLFPSRADAVPFRARSLFVVAFA
                     AVLTHPFLDWLTTYAIAIFAPVTWRWYSGNAIFIVDWVYWILMISGIALSERRWRAGL
                     PAPGTPAKIAGILMLAYIGANLAESSWVEAATATTLQRRGIKPVLVVAGPPPLAFWDR
                     TIEWRSRDQFGSGKFSPATGIELAQAAQPIGLDSPQLMQARQTQRYVRSFLVWSRMPI
                     VVSIGGQKYLTDQRFYNATPIPLGTTLKKMVRRSAFLIPLDKR"
     gene            9904..11151
                     /locus_tag="VE968_01575"
     CDS             9904..11151
                     /locus_tag="VE968_01575"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HZU50543.1"
                     /translation="MSTRGEHLVHADRRFATGGGILAHLAAPAVSKVLDEIDRRLAVG
                     GIETLLPNGETKHLGFRASGPKALVQLSSWLALVRLATSGSVGWYKAWTLGEWSSPDP
                     VKIFELFSANAVALGDLGRAKGPFRWLNALAHRLRDNGRSKARENIAAHYDLGNDFYS
                     AWLDRTMTYSSARFGSGRESLQAAQLRKISNLLDRLDLGPGKRMLEIGCGWGTLAIEA
                     ARRGACVVGLTLSTEQKAWAEQKIKEAGVGDRVEVRLQDYRDVDDQFDAVASVEMVEA
                     VGRRWWDTYVASIARNLKRGGRAGLQFISIEHRIFDRYAQNADFIQTYIFPGGLLLDE
                     VEFQALAHANGLSWFDRETFGPDYAETLKRWRQRYDQAVSRGALEGFEEPFHNLWRYY
                     LMYCEGGFRGGAINVAQVTMQKN"
     gene            11230..11694
                     /locus_tag="VE968_01580"
     CDS             11230..11694
                     /locus_tag="VE968_01580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HZU50544.1"
                     /translation="MTGLSLSDISDKMRHIDFAMLSTKTEGGAIASRPMSNNRQVEYD
                     GDNYFFTLQDTGTLRDITGDSNVGLSFQGKSGALGMKPFFITVEGDAELIRDKAEFAK
                     HWTSDLDDWFKDGLETAGLVLVKVHARRLHYWDGYHQGEVALEQTGAREPAQ"
     gene            complement(12017..12733)
                     /locus_tag="VE968_01585"
     CDS             complement(12017..12733)
                     /locus_tag="VE968_01585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HZU50545.1"
                     /translation="MTDSKAIGGRLALVTGASRGIGAATAEALARAGAHVILVARTSS
                     ALEDVEERIHAAGGTATIAPLDLTDGENVGKLAGAVAERWEKLDILVLNAAMLGSLTP
                     VQDIDPKEYSRVLSINLLANQALIAAFDPLLRRAERADVVALTSSVGAEPRAFWGAYG
                     SSKAALESLLGAYADETAYTGRIKVHVVDPGATRTRMRELAYPGEEPHSVKPPAIVAD
                     AIVNLVASDVETGAKTRVEA"
     gene            complement(12752..>14095)
                     /gene="purF"
                     /locus_tag="VE968_01590"
     CDS             complement(12752..>14095)
                     /gene="purF"
                     /locus_tag="VE968_01590"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HZU50546.1"
                     /translation="HALQHRGQEAAGVTTFDGKFFHSHRAMGHVAGNFDRDDIIRRLA
                     GRSGIGHVRYSTTGETALRNVQPLFAELAEGGFAVAHNGNLSNAMKLRRTLNRRGSIF
                     QSTSDTEVIIHLVATSDHKGTLDRLTDALKHVEGAYSLVVLTDQGLVACRDPLGIRPL
                     VMGKLGEATIFASETVALDVIGASFLRDVEPGELILVNDSGIRSFRPFQKVSPRPCIF
                     EHIYFSRPDSVADGMSVYEVRKSIGAELAREAPVTADYVVPVPDSGVPAAIGYSQASG
                     TPFELGIIRSHYVGRTFIQPSQDVRLQGVKLKHNANSALIDGKSIVLVDDSIVRGTTS
                     VKLVQMMRDAGAREVHMRIASPPTRHSCFYGVDTPERAKLLAAQMSIEQMRDYINADS
                     LAFISIEGLYRALGEERNPARPQRCDACFTGAYPTTLTDLAEKEAATALSLVASR"
BASE COUNT         2852 a         4170 c         4290 g         2783 t
ORIGIN      
        1 ataacgtcgc cagccgatca tcgggaagcc gatcgcgtcc gaagttcgcg gtcagcgcct
       61 gcgccatgat cactcgaccg ccgggcgtta ctgcaaccca gttgccgtgg agagccattt
      121 cgatgccccg atccgcacga aagccgggat tagcctgcca tgcgacgtcg gcgagcagac
      181 atgacgcaag cctcaggcgc cgcatctcgg gatgatcatc gtcgaacaag ggagcgatcc
      241 attggtcgag caggtcgcca tgttggccga agcggtgttc gccgccaccc gcctcgcgag
      301 cttcctcgac gagtgggtcg atccgccggt cttttgtgct caacctcgaa tagagcagtc
      361 cctcgcggat cccgtaagtg gaaatgacga gttccgaggg ctcgagttca tcgacgagga
      421 cgtcaaggag catcgctgcc tgcggagagc ttgcaaggcg aggcgggctc gttgcaccgg
      481 cgaacttaac cccggggtca cgcaagatct tccgcaactc tcgcgcacga cctggcttca
      541 tctgatactg gtgcgtgatt ggcagcggga actcactcgc gagcatgtca attctcgcga
      601 gcgcgcgcca cgagccaccg accatgtaaa agggccggct gctagtttgc ccggtaaggc
      661 aggaaccctt cagcgtcgag cgcagcaatt tgcgtgcttc gcgttctccc gacgcgcttg
      721 cctcaagtcg aagcaccccg agaggcatcg aaatgccgct gaccggctcg cctccgacga
      781 ggttcacgag ctcaaggctc ccgccgccaa gatcaccgac gataccctca gctcccggaa
      841 ttcctgaaag cactccctgg ccggcaagat cggcttcctc gcgcgcgctc agcacttggc
      901 agttgatgcc catttgttcg acttcacgga tgaactcagc accatcggcc gcatcgcgaa
      961 cggccgccgt cgcgacggcg atcgttcgct ttacattcat atgatcaatg aggagccgaa
     1021 agcggcgaag tgcggcgagc gccttggcgc gacctaccgg cggaagtcgg cccgagcgcg
     1081 caaggccgac gccgagaccc gcgagaactt tctcgttgaa gatcggcgct ggaacgcgcg
     1141 ctggaccggc gtagacaacc agtcgaaccg agttcgaccc gatgtcgatt attgccgatg
     1201 attccgcctg tcgcagctat cgtccccggt gaaagcgcag ctttggcact ttgcggcctt
     1261 tcttgagcgc ctggccacgg cccgaaaggc tcgggttcga catgaaataa tcgtggaggt
     1321 tgaatgcgtg ccccggcgtc gcgtgaagcc gcgtgtacgt gccatccgcg ttcagccgcc
     1381 agctttgctc attgtcgata aggtttgcga ccatcacctg gtcgagaagc tgggcatgca
     1441 cggtcgggtt ctcgattgga agcatgtact cgatgcggcg atcaaagttc ctcggcatcc
     1501 agtccgcgga actgatgaac accttcgctt gcgcatgggg cagcgagtgc ccgttagcga
     1561 aacaccagag ccgcgcgtgc tcaaggaatc gcccgacgat cgacttgacg tgaatattct
     1621 cgctgaggcc cggaacgccc gggcggacgc agcaaatgcc gcgcacgacg aggtcgatcg
     1681 gcacccctgc ggcgctcgcc tcgtaaagct tctcgattat ttgcggatca acaatcgagt
     1741 tcatctttgc ccagataccc gatggctttc cttctcgggc attcacgatc tcggcatcga
     1801 tgagcttcat cagctcgtct ctgagctggg tgggtgatat tacgagctgc ttgaggttgc
     1861 ggggttcaag gtagcctgtg atatagttga acagcttcgc cgcatcgcgg ccaatctgcg
     1921 ggttcgccgt gaagtagcta aggtcggtgt agatccgcgc cgcgacgggg tggtagtttc
     1981 cagttccaaa gtggcaatag gttcgaaaac ccttctcctc ccgccgcacg accattgaaa
     2041 ctttcgcgtg cgttttccaa tcgatgaacc cgtagacgac ctgagcgccg gctcgctcga
     2101 gcgcgttggc ccacatcaaa ttctgttcct cgtcgaagcg cgccttgagc tcaatgacgg
     2161 cggtcaccga ttttccagct tcggcggcgt cgatgagcgc tcggatgatc gccgactgct
     2221 tcccggcgcg gtaaagtgtc tgcttgatcg caacgacgtc ggggtcagcc gcagcttgct
     2281 ggatgaattc aaccaccacc tcgaaacttt cataggggtg gtgaacgaga atatccttct
     2341 ccttgatcgc cgcgaagcaa tcgccgccat gttcacggac gcgctcggga aagcgcggat
     2401 tgaatggggg gaacttgagg tctggacggt cttcctcgac gagctgcgag aggtccgtca
     2461 tcccaaggaa gccccgcgtc tcggacgtaa cagccgtatc ggcgctgagg ccctccttca
     2521 gttcattgac gagcgactcg ggcatgccgg gctcaagttc aagccggaca acgcgtccgc
     2581 gccggcgcct cttaatcgcg gttcggaagt aaagagcgag atcctcggct tcctcttcga
     2641 cctcgatgtc gctgtcgcga atgatccgga acgcacctcc ctgaagcact tcatacttgg
     2701 ggaaaagata actcgttttg cgacgaatga gcgtttcaag agcgatgtag cgaccgatgt
     2761 cgccgggcag acggatgaat cggggcagcg tcgggggcgc catgatgagt tcacgaacgc
     2821 tcgtcttgcc cttcttcagt tcaaagatga ggcccagtcc cttgttgggg atgaaaggga
     2881 agggatgcgc gggatcgatt gcctgcgggg tgaggaccgg gaaaatctgt tcgcggaatt
     2941 gttcgtcaag ccaagcctcg gcgtccgggt caaggccctc cgattcttcg acaacgtgca
     3001 tcccagcaac atcgagctga gcctgtaact ccgcccatac ttcgtgctgg ctcgtgacga
     3061 gtctgtccgc atccgaactg atcgcgctca attgctgggc aacggtcaag ccctcgggcg
     3121 atatctcctc gaccccgagc gtctggtggg ccttcagccc agcgacgcga accatgaaga
     3181 attcgtcgag gttgtttgcc gagatcgaga ggaaccgcag ccgctcgaga aggggatgct
     3241 tgagattgca cgcctcttca aggacgcgcc ggttgaacgc cagccagctg agttcgcgat
     3301 tgaagtatcg cggttccggt tggggaactt ccgcagctgc cgtgagggcg cccgcgggct
     3361 gcgggtcagg gccgacgtcc atcagttcgt tacgagtaag aagtgagcgt gcgcgaggat
     3421 ccactgcatg tcgccgaact gaaacagagg cgtgttacag agatgtgacg aaaaatggta
     3481 tgggcgtcgc ttccaagcga cgttggaagg ggaaaattgt ggcgaaggac aagaagaagt
     3541 caaaggacaa gaagcacaag aagagtgacg gagccgcaaa tggcgggaag gcttctaaga
     3601 aagccgcaaa aggcttcgaa gcaataaccc agaacccgat cgtcgctgac gttgtcgcgg
     3661 ccgctctcat ctcgatggcg gcagcgctca aggattccga caaggcgcgt cggatcgcga
     3721 gcgatgcagg cgatcagctt ggcgaacttt caaaaaagag cgcgaagcaa gggagcatca
     3781 tgtgggacct cgcgcttgat ataggtcgtc gtacgctcga gactctcgcc ggcgagaatg
     3841 ctcaaaaagg aaaacccggt agccggtgag ttgagtgaac agccggtcga gcggctgttg
     3901 actctgaact ccacgccaac gagatatcag catccaacat aggttagcgc tcccatgatc
     3961 ccgagtcgcc gcgccgcact cattgtcgaa gatcagccgt tcgtcggaat ggttgcctct
     4021 gacatcctaa aggaagcggg tttcgaaacc ttccacgcgt atgatgccga agcggcaacg
     4081 caactgctca ccgatcatcc agagatcgag gttgtcgtta cggaggcgca gcttcccggt
     4141 gacgtcaatg ggctggagct atgtcggcgt gtgtcgcggc agcgacccga agtgcagctg
     4201 gttcttactg ggacggcact cgaactgcac cacaatgacg tgccaagcgg agcgcgaata
     4261 cttcgaaagc cttatgcgag cggtgaacta aggacgctcg tagccgatag ggcacttctc
     4321 gccgaagcgt gaattttctc acagatgttc ggcaaactcg cggatcaggc gtcgatatag
     4381 atcgcgcttg aacggaacga taagctccgg cagctgtcgg ggaggaaccc acttccactc
     4441 gcgaaactcg gggtccttcg tcgcgatatt gatgtcgcta ttgtcgccga ggaagcgcgc
     4501 caggaaccag tcctgttcct ggcccttgta tttcccgccc caaagcttgc tcttcaagtt
     4561 ctcgggaagg tcatacttca gccgctccgg acaatcggca acgcgttcga cgaggtgggg
     4621 agggatgccg gtttcctctt caagctcgcg aagcgccgtc atccatggat cattttcgcc
     4681 cgcgtcgata ccgccctgcg gcatctgcca cgcctcgtcg gtattatcga tgcgagcgcc
     4741 aacgaacacc tcgccgtggc tgttaagcag cataacgcca acgccgcgtc ggtagggtcg
     4801 agggtcaaca tcactcatcg cacttgctcc acccagggct tgagataggc catgcaccgg
     4861 gcgaaatctt ctcttcccga cggaattgca ccacgcaagt tcagaaaccc gtgcacggtt
     4921 cctcgaacct cgaggtagat cgtctcgacg cccgcctccg cgcagcgcga cgcataagca
     4981 cggccctggt cgcgaatggg atcaagcccg gcggtgacga caaaggtcgg aggcaatccg
     5041 ctcgtcccgg caagcaatgg actgtagcgc cagtcacccc gcggtgcggc atagcaatcc
     5101 tcgaaccagt ccatgctctc tttcgtcagt acatagccac tgttgaactc ggcgtagctc
     5161 gggtagcgaa cttccggatc gcttgccgga tagataagcc actggccggc gatcgggacc
     5221 atcgccggtg agtcgcgaag cgaagcggag atgacgcagg cgagattacc ccccgcgctg
     5281 tcgccggcaa ggaatagggc ggtcggtgcg cgctccagct gtggcggcgc ggcggcgatc
     5341 cagcgcgttg cggccaaggc gtcgttgagg cctgccggga agggatgttc aggagcgagg
     5401 cgataatcca cggccactac ggggaggtcg agcgccttcg cgacgtcgat gcagaagggt
     5461 tcgtgggttt ccaaatcgcc gatcacccag ccgccaccat gaaggaagac gaggagcggc
     5521 ccgggcccgc gctctggcct gtcgtcgtaa agccgcagcg gcaccggccc ttctatgttc
     5581 ctacctattc ggatcttctt tgctggcgtt tcaaatgcgt gacgcgaagc gatcagcatg
     5641 cgccgcgctc catccggtcc ggcaagatga gccttcggcc gatcaagtgt ctgaatgtaa
     5701 gcgaggaagt cgcgaacgtc gggccggatg taaggttctc gcatgaactt tggttctcca
     5761 agcgccgagt cgagggagta cacgatccaa atatctccta gcgacgaaac tgtagctaac
     5821 gaggcctcaa gggcctaaaa gggcagtcac atccaaaaca tgcgtttgtg aaggactcat
     5881 ctgtggcaac tgccacccat ctcctcaccg aaaaagaagc cacggcgcac ccggccggcg
     5941 aagccgtcgt cgttcgattc gccggcgata gtggcgacgg catgcagttg accggcggcc
     6001 agttcacctt gtcaacggcg ctcgccggaa atgacctctc gacgtttccc gatttcccgg
     6061 cggaaatccg cgcgcctcaa gggacgacat ttggagtttc cgcgttccag atcaacttcg
     6121 gctcgacctc gatcgatacg gccggcgacc agcccgacgt gctgattgca atgaacccgg
     6181 cggctctaaa cgtgaacgcg ccgcaggttc gcgagggcgg cctgattatt gccgacgagg
     6241 gtgagtttac ccagcgaaac cttgcgaagg cggggtacga gcgtaacccg ctcgaggatg
     6301 gcagcctcgc caagtggcag ctcgtccatt tcaacatctc gcaactgacg cttgatgcag
     6361 tgaagccctt tgggctcggc aacaaggaag cgctgcgttg caagaacatg tggacgctgg
     6421 ggcttgcgct gtggatgttc gatcgtgacc ggcagccgat cgtcgactgg ctgaagcaga
     6481 agttcgccaa ggccccggag ctcgccgaag ccaatatcgc ggcactgaat gccggtcacg
     6541 cctacggcga gaccgtcgag atgggcgccc ccttcaagca gcaccatctc gcgccggcgc
     6601 ccgcggagcc tggtctttac cgaacggtga cgggtgccga atcgctggcg ctcgggctcg
     6661 ttgcgggatg cgagcttgcc gggctcaaca tgttcttcgg ctcatacccg atcacaccgg
     6721 cgagcccgtt gctgcatcat ctcgcgcgcc tcaaggaatt cgggattacc acgttccagg
     6781 cggaggatga aattgccgct gtttgcgcgg caatcggcgc aagctatgct ggccaccttg
     6841 gagtgacttc ctcctcaggc ccgggaattg cacttaagac cgaggcaatc ggccttgcaa
     6901 tcatgactga gcttccactc gtcgttgtca actcgcagcg tggtggaccg tcgaccggcc
     6961 tcccgacgaa gaccgaacaa tcagatctct accaggcgat ctatgggcgc aatgcggatg
     7021 caccggttcc agtgctcgcg gcgcgatctc ccgccgacgc attcgaatgc gcaatcgagg
     7081 cgtgccggat agcgacgcgg tacatgacgc ccgtcattct gctgacagac ggctacatcg
     7141 ccaacgcggc cgagccctgg cgcgtgcccg acatgagccg atacgagccg ttcaaagtga
     7201 gcttcctgaa cgccgctccg gaaggcggag cggcgatgcc ctattcgcgc aacggtgacc
     7261 ttgcaagacc gtggatccga cccgggacag cagggctcga gcatcggatt ggtggcattg
     7321 agaaggctcc tggtaccggc aacatcgact attcgcccgc cgttcaccaa gagatgacga
     7381 atacccgctg ggcaaaagtc gccggcgttg cgaaatcgat tcccgaccag gaaatatgcc
     7441 ttggtcaaga aggagccgag cttgcggtcg tcggctgggg ctcgacgttc ggtccgatcc
     7501 accaggccgt tggccgtgcc cttgcaaggg gactcgacgt tgcgcacgtc cacgttcgcc
     7561 acttgtggcc gatgccctcc aacatggcgc gactgctcaa gagctttaaa catatactcg
     7621 tgccggaaat gaacatgggg cagttcaaga ccgtgctgcg cgaccagttt ctcgtcgacg
     7681 ccaagtcgct caccaaagtt tctggacacc ctttcagaat tgcggagatc gaagcggcaa
     7741 tcgatggggc gatagccggc ggctcgaatg cgagagcaga ggggcggcca atgaacgcac
     7801 ccgggctcaa gcaatgaagc agctcaacgt ttggccgatg ctgcttctgc tcatcgccgt
     7861 cctcttcatc atcatctggc tgagaccgca ttcatgaacg acattacgac gctgaccact
     7921 gcgaaggatt gggcgagcga ccaggaagtc cgctggtgtc ccggctgcgg cgactatgct
     7981 gtcctgaagg ctgtgcagcg aaccatgccg gatcttggaa tcgcccgcga aaagacggtt
     8041 ttcatcagcg gcatcggctg ctcgagccgg tttccctatt acatggcgag ctacgggttc
     8101 cacacgatcc acggccgagc gcccgcgatc gcaacgggcg tcaagcttgc caatcccgag
     8161 ctcgacgtct ggatcatcac gggcgacggc gatgcactgt cgattggcgg caaccacacc
     8221 atgcacgtgc ttcgccgcaa cctcgattgc cagatcctgc tgttcaacaa cgaaatatat
     8281 ggccttacga aaggccagta ttcgccaacg agccgggtag gaacgcgctc gccgtcgacc
     8341 ccgttcggtt cggttgaccg accggttacg ccctgcgcgt tcgcacttgg ctcaggcggt
     8401 cgcttcattg ctcgtgggat cgacgtccac aagaacttgc ccgacgtgct taaggcagcg
     8461 cacgcccacc gaggcgcaag ctttgttgag atctaccaga actgcgttgt ctacaacgac
     8521 gacgtatttg cgagtttcac ggaacgaaca gtcgctgccg aaaagcagct ctggctgaag
     8581 gctggcgaga agatgctgtt tgcaaacgga acgaagggat tggcgctcga cacggaccgg
     8641 cttgcactga aagtcgtcgc tgctgacgat ccagcggtcc tgacgcacga cccaagcaac
     8701 cgccagctcg ctgcaatgct gatcctgatg ccccaggaag gctttcccat cgcgctcgga
     8761 gtgatctacg aggatccggc accgacgttt gaatcctccg tggcggagca gaataaggcg
     8821 gccgcttctg gcaagcagcc ggaccttcag gcgcttgttt ccaagggcca gacatggatg
     8881 atcgccgcgg agcccaagcg cctctgaccc gccgccttta gtggacaaca ttacacacac
     8941 gcttgccggc gcgttgctcg gcgagatggg gcttaagcgc cgctctcgct ttgcaatggc
     9001 tgcctgtctc ctcggtgcga acgcgcctga cctcgacgtg tttgcaccct tggtgcttcc
     9061 ggtcgacggc atcgaattcc atcgcggacc aatgcatgcc gtcttcgcct ggcccgtcct
     9121 tgcggccggg atcgttgctc ttctctggct cgtcgatcga ctattcccga gtcgagccga
     9181 cgcggtcccg ttccgcgcgc gctcgttgtt cgtcgttgcc tttgcggccg tgctgacgca
     9241 tccgttcctc gactggctga ccacttatgc cattgccatc ttcgctcccg ttacttggcg
     9301 ctggtattcg ggcaacgcga ttttcattgt cgattgggtc tattggatct tgatgatcag
     9361 cgggatcgcg ctttctgagc gacggtggcg cgccggtctc ccagcgccgg gcaccccggc
     9421 gaagatcgcc ggaatattga tgctagccta catcggcgca aatctcgcgg agagttcgtg
     9481 ggtggaagcg gcaacggcga cgacattgca gcgacgcgga atcaaaccgg tgcttgtcgt
     9541 cgcggggcct ccaccgctcg ccttttggga caggacgatc gaatggcgaa gcagggatca
     9601 gttcggcagt ggcaagttca gcccggcaac ggggatcgaa cttgcccaag cggcgcagcc
     9661 gatcggcctc gacagtcccc aattgatgca agcgaggcag acgcagcgct atgtacgttc
     9721 cttcctcgtt tggtcgcgaa tgccgatcgt cgtcagcatt ggcggccaga agtatctaac
     9781 cgatcaacgc ttctacaatg ccacgcccat tccgctcgga actacgctta agaagatggt
     9841 gcgtcggagt gcatttctta tcccgctcga caagcggtaa atgagttcat aacgcgcgct
     9901 gggatgagca cgcgcggcga acatctggtg cacgccgacc gccgctttgc aacgggcggc
     9961 ggaatcttgg cgcaccttgc ggctccggcg gtctctaagg tcttggacga gattgaccgt
    10021 cgactggctg ttggcgggat tgaaacattg ctgccgaatg gagaaacaaa gcatctcggc
    10081 tttcgtgcaa gcggcccaaa agctctagtc cagctctcca gttggctcgc tcttgtgcgg
    10141 ctcgcgactt cggggtcggt cggatggtac aaggcttgga cacttggcga atggtcgagc
    10201 cccgatccgg tcaagatttt cgagctcttt tctgccaatg ccgtcgcact tggcgatttg
    10261 ggccgggcga aagggccgtt ccgctggctt aatgcgctcg cgcatcgctt gcgcgacaat
    10321 ggcaggagca aggcgcgaga gaatatcgcg gcgcactacg atcttggaaa cgatttctac
    10381 tccgcctggc tcgaccgcac gatgacctat tcatcggcgc gatttggatc cggtcgcgaa
    10441 agcctccagg cggcgcagct tcgcaagatt tcgaaccttc tcgatcgtct cgaccttgga
    10501 cccggcaagc ggatgctgga aattggatgt ggctggggga cattggcgat tgaagcggca
    10561 aggcgcggcg cttgcgtcgt tggcctcacc ttgtcgaccg aacagaaggc gtgggccgag
    10621 cagaagatca aggaagccgg agtgggtgac cgggtcgagg tgcgactgca ggactatcgt
    10681 gatgtcgatg accagtttga cgccgtggct tcagttgaaa tggtcgaggc agtcggaagg
    10741 cgctggtggg atacgtacgt tgcaagcatt gcgcgaaacc tcaagcgagg cggccgagca
    10801 ggattgcagt tcatctcgat cgaacatcgg atcttcgatc gctacgcgca gaatgccgac
    10861 ttcattcaga cgtacatctt tccgggcggt ctcctcctcg acgaagtgga gttccaggcg
    10921 ctcgcgcacg cgaatgggct cagctggttt gatcgcgaga ccttcggccc cgactatgcc
    10981 gagacgttga agcgctggcg acaacgctat gatcaagccg tttcccgcgg tgctctcgag
    11041 ggatttgaag agccgtttca caatctctgg cgatactatc tcatgtactg cgagggcggc
    11101 tttcgcggtg gagcgatcaa cgtcgcccaa gtgaccatgc agaagaactg aagctacggc
    11161 cgttgtgccg tatgagggac cccaagagaa ggtgcgcgcg ttcgctcgca agtacccaag
    11221 gagcatctca tgaccggact ttccctcagt gacatcagcg acaagatgcg ccacatcgat
    11281 ttcgccatgc tttcgacgaa aaccgaaggc ggcgccatcg catcgcgacc gatgagcaat
    11341 aatcgccagg tcgagtatga cggtgacaat tactttttta cgcttcagga taccgggact
    11401 cttcgtgaca tcactgggga ctccaacgtc ggtttgtcct tccaaggcaa gtcaggagcg
    11461 ctcgggatga agcccttctt cattacggtt gaaggcgatg ctgaactcat ccgagacaag
    11521 gccgagttcg caaaacactg gacgagcgac cttgatgatt ggttcaaaga cggtctcgag
    11581 acggcgggtc tcgtgctcgt caaagtgcac gcaaggcgcc tgcattattg ggacggttat
    11641 catcagggag aagttgctct cgagcagacg ggcgctcgag aacccgccca gtgaatatgg
    11701 attgctgttg gcgaaaggag acgcgtcgat ccttgccaag cgtcggcgtt aatctcgttt
    11761 tggggtttgt tggtcgggtg agctctaccc gcgcgaggct tagcagagct cacccgtgct
    11821 cggtacaggg gcaacgttgc accgagcaat ctggcaattt cgagagcttc tgcccctccg
    11881 ctaccattgg aacgacgcga gtgcttcccc ctgcactcat cagaatgcgt cagaatggtt
    11941 actgctcata cgaattaacc atgagtcggg caaccgacgt ttaatcgaaa atgaagaaga
    12001 aagggccgcc ggcgagtcat gcctcgacgc gggtcttcgc acccgtctca acatcgcttg
    12061 caacgaggtt gacgatcgcg tcggcgacga ttgcgggtgg cttgacgctg tggggttctt
    12121 cacctggata ggcgagttcg cgcatgcgcg ttcgagtggc accggggtct acgacatgca
    12181 ccttgatccg tcccgtgtag gcggtttcat cggcataggc gccaagcagg gattcaagtg
    12241 ctgccttgga cgaaccatag gctccccaga acgcacgcgg ctcggcgccg accgatgacg
    12301 ttagggcaac cacatcggct ctttccgctc ttcggagcag cgggtcgaac gctgcaatga
    12361 gtgcctgatt ggcaagaaga ttgatgctga ggacccggga atattccttg ggatcaatgt
    12421 cctgcaccgg agtgagtgag cccagcatcg ctgcgttgag aacaagaatg tcgagttttt
    12481 cccagcgctc ggcaacggca ccggcaagtt tgccgacatt ctcgccgtcg gtaagatcga
    12541 ggggtgcaat cgtcgctgtt ccgcctgcgg cgtggattcg ttcctccaca tcctcgagcg
    12601 cggaagacgt gcgcgcgacg aggatcacgt gcgcgccggc acgcgcgagc gcttcggcgg
    12661 tcgccgcgcc aatgccgcgg gaagcgccgg taacgagcgc gaggcggccg ccaattgctt
    12721 tcgaatcggt cattgcgccg cctctagcgg cttagcggct ggccaccaaa gagagcgccg
    12781 tcgctgcttc tttttccgca aggtcggtca acgtcgtcgg gtatgcaccg gtaaagcagg
    12841 catcgcagcg ttgcggccgg gccggattcc tttcttctcc aagggcacga tagagccctt
    12901 cgatggagat gaaggccaag ctgtccgcgt tgatgtagtc gcgcatctgt tcaatgctca
    12961 tctgcgctgc aagcaacttg gcccgctcgg gcgtgtcgac tccataaaag cagctgtgac
    13021 gcgttggcgg ggaggcaatc cgcatgtgga cttcgcgtgc gcccgcatcc cgcatcatct
    13081 gcacgagctt gacgctcgtc gtgccgcgca cgatcgagtc atcgacgaga acaatgctct
    13141 tgccatcgat gagcgccgaa tttgcgttgt gcttcagctt cacgccttgg agccgaacgt
    13201 cttggctggg ctgaatgaaa gttcggccga catagtggga acgaatgatt ccgagctcga
    13261 acggagtgcc gctcgcctgg gaataaccaa tcgccgcggg tacaccgctg tcgggtaccg
    13321 gcacgacata gtcagcggtg acgggcgctt cgcgcgcgag ttcggcgcct atgcttttgc
    13381 gtacctcgta gaccgacatg ccgtcggcga ccgagtcggg tcgtgagaaa tagatgtgct
    13441 cgaaaatgca tggacgcggc gacactttct ggaacggccg gaatgaacga attccgctgt
    13501 cgttgacgag aatgagttcg cccggctcga catcccgaag gaagctcgcg ccaatgacat
    13561 cgagtgcgac ggtctcgctt gcaaagatcg tcgcttcgcc gagcttgccc atgacgagcg
    13621 gacgtattcc aagcggatca cgacaggcga cgagaccctg atcggtgaga acgacaagag
    13681 aataggcgcc ttcgacatgc ttcagcgcat cggtcaggcg gtcaagcgtg cccttgtggt
    13741 cggaagtcgc aacaagatgg atgatcacct cagtgtcgct ggtcgactgg aagatggacc
    13801 cgcgccggtt cagtgtccgc ctaagcttca tcgcgttcga caggttacca ttgtgcgcta
    13861 cggcgaagcc gccttccgca agctcggcga atagcggctg cacgttccga agggccgtct
    13921 cccccgtcgt cgaatagcgg acgtgcccga tcccggaacg gccggcgaga cgccgaatga
    13981 tgtcgtcgcg atcgaaattg ccggcgacat ggcccattgc acgatgggaa tggaaaaact
    14041 tgccatcgaa tgtcgtgacg ccagccgctt cctggccgcg atgctgcagc gcgtg
//
LOCUS       DASRBJ010000052         2446 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_360172,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000052 DASRBJ010000000
VERSION     DASRBJ010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_360172"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..445)
                     /locus_tag="VE968_01595"
     CDS             complement(<1..445)
                     /locus_tag="VE968_01595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HZU50547.1"
                     /translation="MAQQMSLPIDAVLPELLAALEKETRALLIAPPGAGKTTRVAPAL
                     LEQSWCSGEIFLLVPRRLAARAAAEFIAAERGELPGQTIGYATRLDSRLGNSTRVIAM
                     THGVFLSRIEADPELSGVSAVLFDEVHERSLDNDLALALALDAASA"
     gene            complement(482..2389)
                     /locus_tag="VE968_01600"
     CDS             complement(482..2389)
                     /locus_tag="VE968_01600"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010164710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HZU50548.1"
                     /translation="MRTVTIALLTIAFSASSSAATLREYSSLALSPLGDRVAAVESDA
                     VANATSRPHGRLVIRSVASGHVLSVVDPCATCEYSGLTFAPDGRLAYLERDKGTTRLM
                     LVGNGAPVALATINGVAQQPRFSPDGRELALLVTVGARKETGATQAGIREVGEIGEQN
                     DEQRIALIPAAGGALTTVSPPDRYVYEYSWTPDGRGFVATSALGNGDNNWWIAELDRI
                     DARTGAVHRITAPKLQMNQPRVSPDGRTIAFIGGLMSDFGSIGGDVYTVPIAGGDPVD
                     RTPGYRGSFTSLQWGANGLVASALIGERNAIVPFGAALSPTAPVWAEPASIAAGDAKF
                     ARSLDGRTLAFVRQDFEHAPAIFVGSASAVRQISHDNDGWTPLVAARSVSWQSGPFTV
                     QGWLLAPRTPSHGKAPMVTSVHGGPAAANVPSFVWQGTYADLIRDGYYIFLPNPRGSY
                     GQGEAFTRANIRDFGGGDLRDILAGIDAAERVAPIDDNRLGMMGGSYGGFMSMWANTQ
                     TNRFKAIVAGAGLSDWISYYGINGIDQWMLPYFGKSMYDDPQAYWAVSAIRTIKQAHT
                     PTFIYVGERDIEVPPTQSIEYWHALQAMHVPTSLVIYPDEGHGIRDPKNALDVRNRTV
                     AWFDHYVGKAR"
BASE COUNT          466 a          755 c          756 g          469 t
ORIGIN      
        1 gcgcgcttgc cgcgtccagc gcgagcgcaa gagcaagatc attgtcgaga cttcgttcgt
       61 gaacctcgtc gaacagcact gcagagacac ccgaaagctc aggatcggcc tcgatgcgcg
      121 acaggaatac accgtgcgtc attgcgatca cccgcgtcga atttccgagc ctgctgtcga
      181 ggcgtgttgc gtaccctatt gtctgtccgg gaagctcgcc gcgctcggcg gcaatgaatt
      241 cggccgcggc tcgcgcggca agccttcgcg gcacgagcag gaatatttcg ccgctacacc
      301 agctttgctc gagaagggcg ggcgcaaccc tggtcgtctt gcccgcgccg ggcggcgcaa
      361 tgagcaaggc gcgcgtctcc ttttcgagtg ccgcgagcaa ctcgggtaat accgcgtcga
      421 tcggcaagga catttgctga gccatctatc gccttggcgc tccggcttgc ccggtgcgaa
      481 cttacctcgc cttaccgaca taatgatcga accaggcgac cgtccggtta cgcacatcaa
      541 gagcgttctt ggggtcgcgg attccgtgcc cttcgtccgg gtagatgacg aggctggtcg
      601 gcacgtgcat cgcttggagc gcatgccaat attcgatcga ctgcgtcggc ggtacttcga
      661 tgtcgcgctc gccgacgtag atgaaggtcg gcgtgtgtgc ttgcttgatc gttcgtatcg
      721 ccgagaccgc ccaataggct tgcgggtcat catacatcga cttgccgaaa tagggcagca
      781 tccactggtc gatgccgttt atcccataat agctaatcca gtcggaaagt cccgctcccg
      841 cgacgatcgc cttgaagcgg ttggtctgtg tgttcgccca cattgacatg aagccgccgt
      901 agctgccccc catcattcca agtcgattgt cgtcgatcgg tgcgacgcgc tcggcagcgt
      961 cgatgccggc gagaatgtcc ctgagatcgc cgccaccaaa gtcgcgtatg ttggcgcggg
     1021 tgaaggcctc tccctggcca tagctaccgc gaggattggg aagaaatata tagtaaccgt
     1081 cgcggatcag atcggcatag gtcccctgcc acacgaaact cggaacgttg gcagcagccg
     1141 ggccaccatg aacgctggtc accatcggtg ccttgccatg ggacggcgtt cgcggcgcaa
     1201 gaagccagcc ctggacggtg aagggcccgc tctgccagct aacgcttcgc gctgcgacga
     1261 gcggcgtcca accgtcattg tcgtggctga tctggcggac ggccgaggca cttccgacaa
     1321 aaatcgccgg ggcatgctcg aagtcctggc gcacgaaggc aagggttcgt ccatcgaggg
     1381 aacgcgcaaa ttttgcgtcg cccgcagcga ttgacgccgg ctctgcccag accggcgctg
     1441 tcggcgaaag ggcggcgccg aaaggtacga tcgcattccg ctcgccaatg agtgctgaag
     1501 cgacgagccc gttcgcaccc cattggaggg aagtgaacga gccacgatag cctggcgttc
     1561 gatcgacggg gtctccgccg gcgatcggca ccgtataaac atcgccgccg atcgacccga
     1621 agtcgctcat gagcccgccg atgaacgcta ttgttcgccc atccggtgag accctcggct
     1681 ggttcatctg caatttgggg gcggtaatgc gatggacggc gcccgtgcgc gcatcaattc
     1741 ggtcaagctc ggcaatccac caattattgt cgccattgcc aagagccgat gtcgcgacga
     1801 acccgcgtcc gtcgggcgtc caactatatt cgtagacgta gcgatcagga ggcgagacgg
     1861 tggtgagtgc gccgccggcg gcgggaatga gcgcgatccg ctgttcgtcg ttttgttcgc
     1921 cgatctcgcc gacctcgcga atgcccgcct gagtcgctcc cgtttctttg cgtgcgccaa
     1981 cggtcacgag cagtgctagt tcgcgtccgt caggcgaaaa gcggggctgc tgcgcaaccc
     2041 cgttgatcgt tgcaagtgca acgggtgcgc cattgccgac aagcatcagg cgcgtggtcc
     2101 ctttgtcgcg ctcgaggtag gcgagcctcc cgtcgggcgc gaaggtgagc cccgaatatt
     2161 cacaagtggc gcacggatcg acgactgaaa gaacatgtcc gctcgcgacc gatcggatca
     2221 cgagccgccc atgtggtcgg ctcgttgcat tcgcgaccgc atcgctttcg accgccgcca
     2281 cgcgatcgcc caaggggctc agcgcgaggg acgaatattc acgcaaggtc gcggcgctcg
     2341 aagaagccga aaacgcaatc gttagcagtg cgattgtgac ggtacgcatg cgaaaaacct
     2401 ctcttacacg aacgcgatgg tgttcaattt cgattatggg tccccg
//
LOCUS       DASRBJ010000053         4996 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_212596,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000053 DASRBJ010000000
VERSION     DASRBJ010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4996
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212596"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1308
                     /locus_tag="VE968_01605"
     CDS             <1..1308
                     /locus_tag="VE968_01605"
                     /inference="COORDINATES: protein motif:HMM:NF006596.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HZU50549.1"
                     /translation="QAIEIPSVHNRGEVPRVAHLLADQFRAAGIPDADIHFMPYEALP
                     GDQTMALIVRWRSPHPVKKPMLILGHMDVVEAKRSDWKYDPFVFREEGGYFYGRGTSD
                     MKNGDVATTMAAIKLMSEGFKPDRDIIFFYSGDEETRGVGATLGASKWRNLTDAEFGL
                     NADGACASYDEQFRPLGCGISMAEKTFQTYFLTTHNPGGHSSRPRPDNAIYDLADALE
                     KLRKYRFQPMQNEVTRAYFAERARQEGNSTLGQEIRAWLANPNDGAAADAIEANPLEV
                     GLTRTRCVATMLSGGHADNALPQSATATVNCRIFPGVQPTAVQAELQALVGPNVEVKP
                     DPNYIGVPTPASPLRPDVVKAVTAAIQHFHGPEMHVYPEMSTGASDGSFFRAQGIPVY
                     DVDGSWGISPLDERAHGLDERIPVRAMYDDVHYWEMLMRSLAG"
     gene            complement(1305..1763)
                     /locus_tag="VE968_01610"
     CDS             complement(1305..1763)
                     /locus_tag="VE968_01610"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HZU50550.1"
                     /translation="MLDEGDKAPAITVEASDGSTIDLASPGTLLVVYFYPKDDTSGCT
                     REAQDFTSLAGEFAKAGVKTVGVSRDSMKSHEKFIGKYGLSVPLVSDEDGRISEAFGT
                     WVEKSMYGRKYMGMERATYLISADGRILKVWRKVKVPSHAAEVLKAAEKA"
     gene            complement(1763..4453)
                     /locus_tag="VE968_01615"
     CDS             complement(1763..4453)
                     /locus_tag="VE968_01615"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008882 - [glutamate-ammonia-ligase]
                     adenylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamine synthetase]
                     adenylyltransferase/[glutamine
                     synthetase]-adenylyl-L-tyrosine phosphorylase"
                     /protein_id="HZU50551.1"
                     /translation="MSESAAPSARENALRRAQEHSPFLRDAIVARPDIADSFLRFGPQ
                     EAVECALASAGEDLAAKLRRQRYGLALAVALGDLSHEFPLEKVTRELSDFADYAINEA
                     VELAVLERVPGAQFKGFTIIAMGKLGSRELNYSSDVDLLLLFDPQTLPRRSRDDPGEA
                     AVRVGRRLIKLIQERTADGYVQRIDLRLRPSPEVTPIVLPINAAISHYESSALPWERA
                     AFIRARAAAGDVELGRRFLDAIQPFVWRRSLDFGVIEDVRQISARIRDHFAQGAHIGP
                     GYDLKRGRGGIREVEFFVQIQQMIHGGRDTSVRVPATLDAIDALRAANRIDELTAHQL
                     SSAYRLLRTIEHRVQMVDDAQTHLLPSGAAALNNLAELHGVSDGEELLKLLTPNVEQA
                     GTIFDSLAPDPSTRLSNDPLILKEELATLGFSDTDAAARHVTDWRSGKSRSLRSPAAQ
                     QAFEAMLPGLLRAIAAGADPNRALNRLGDIIDRLSSGINLFRLLEARPPLARLLAKIL
                     AHAPALADQLGRRPELFEGLFDASCFAMPPVAQDFAALLGKAMEGHPYDIALDRVRRL
                     VNERRFALGVQLIDRRRDPLDVTEGYARVAEGALVALGRAATVEFEKSHGQFPGGELI
                     VLGLGRLGGHSLTHASDLDVIYLHSAVQGGASNGAKPLGPNDYFNRLSSRVTAALSVP
                     TAAGPLYDVDARLRPEGAKGMLTVSVDAFERYQRNEAWTWEHMALCRARPVFGSAAIR
                     ERMSQMIRDILTMPREFRKIAGDAARMRMEMERHKPPHGPLDVKLGPGGLVDLEFSVH
                     VLQLTKHVGLNTRLEFALEELAAESLVDANVVDALKLLSRMLVMLRLVAPGDIQPTPE
                     TWELVAQACGAGTWAELLAEHDAARQRISHLWNSIKQGAS"
     gene            4570..4707
                     /locus_tag="VE968_01620"
     CDS             4570..4707
                     /locus_tag="VE968_01620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50552.1"
                     /translation="MDRRVIRVDMPPTHAGITAALRRAFEAAGAGDDARQFADLLRRL
                     N"
     gene            complement(4753..>4996)
                     /locus_tag="VE968_01625"
     CDS             complement(4753..>4996)
                     /locus_tag="VE968_01625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="HZU50553.1"
                     /translation="PQREALILVGAGGFAYEEAAEICGCAVGTIKSRVARGRVALEQL
                     LSSGKLPSRRQHRTDPDKSALQTIMGEVDDLSRDHD"
BASE COUNT         1035 a         1548 c         1471 g          942 t
ORIGIN      
        1 caggcgatcg aaatcccgtc ggtccacaat cgcggcgagg ttccaagggt agcgcatctc
       61 cttgccgacc aattccgtgc cgccggcatc ccggacgccg acatccactt catgccgtat
      121 gaggcgctcc cgggtgacca gacgatggcg ctcatcgttc gctggcgttc accccacccg
      181 gtcaagaagc caatgctcat tcttgggcac atggacgttg tcgaagccaa gcgttcggat
      241 tggaaatacg atcccttcgt tttccgcgaa gagggcggct atttctatgg ccgcggcacg
      301 agcgacatga agaatggcga cgttgcgacg acaatggctg caatcaagct gatgagcgag
      361 gggttcaagc cggatcgcga cattatcttc ttttacagcg gtgatgagga aacgcgcggc
      421 gttggcgcga cccttggagc aagcaagtgg cgcaatctta cggacgccga gttcggcctc
      481 aatgccgacg gggcttgcgc atcatacgac gagcagtttc gtccgctcgg ctgtggcatt
      541 tccatggctg agaagacgtt ccagacttat ttcctaacaa cgcacaatcc gggtggccac
      601 agctcgcgtc cgcgtcctga caacgccatc tatgacctcg ccgacgcact tgagaagtta
      661 cgcaagtacc gcttccagcc aatgcaaaat gaggtgaccc gcgcctactt cgccgagcgc
      721 gcgcgccagg aggggaacag cacgctcggg caggagatcc gtgcctggct tgcgaacccc
      781 aatgacggcg cggctgcgga tgcgattgaa gccaatccgc tcgaagtcgg actgacgcgc
      841 acgcgctgcg tcgcaaccat gctgagtggc ggacacgccg acaatgccct gccgcaaagc
      901 gcgaccgcaa cggtcaattg ccggatcttt cccggcgtcc agccaacggc cgtccaggct
      961 gagcttcagg cgctcgttgg accaaatgtc gaagtgaagc cggaccccaa ttacatcggc
     1021 gttccgacgc cggcgtcgcc gctgcggccc gatgtcgtca aagccgtcac cgcggcaatc
     1081 cagcacttcc acggacccga aatgcatgtc tatccggaga tgtcgacggg agccagcgac
     1141 ggcagcttct tccgcgcgca aggcataccc gtctatgacg ttgacggtag ctggggtatt
     1201 tcgccgcttg atgagcgggc gcacgggctc gatgaacgaa tcccggtccg agccatgtat
     1261 gatgatgtgc actactggga gatgctgatg cgctcgcttg cgggctaggc cttctcggca
     1321 gccttcagca cttctgctgc atggctgggg acctttacct tacgccagac cttgaggatg
     1381 cgcccgtcgg cgctgatcag gtaagttgcg cgttccattc ccatgtactt gcgaccgtac
     1441 atcgatttct cgacccatgt gccaaaggct tcggagatgc gtccatcttc gtcggacacg
     1501 agcggcaccg aaaggccata tttgccaatg aacttttcgt gacttttcat tgaatcacgt
     1561 gaaacgccaa cggtcttgac accggccttc gcaaactcac ccgcgagcga cgtaaagtcc
     1621 tgggcttcgc gggtgcagcc agaggtatca tcctttgggt agaaatagac cacgagcagc
     1681 gtcccgggcg acgcgagatc gatggtgctt ccatcgcttg cctcgaccgt gatcgctgga
     1741 gccttgtcgc cttcgtcgag catcatgacg ctccctgttt gatgctgttc cacaaatgag
     1801 aaatcctctg ccgcgcggcg tcgtgctcgg caagaagctc cgcccacgtt ccggcgccgc
     1861 atgcttgcgc gacaagctcc caagtctccg gagtcggctg gatgtcgcca ggagcaacca
     1921 gtcgcaacat cactaacatg cgcgatagca attttagcgc atcgacaaca tttgcatcaa
     1981 ccaaagattc ggcagcaagc tcctcgagtg cgaactcgag gcgtgtgttc agcccaacat
     2041 gcttggttag ctggagcacg tggaccgaaa attcgagatc aacgagtccc cctggcccga
     2101 gcttgacatc gagcggtcca tgcggcggct tatggcgctc catttccatg cgcatccgtg
     2161 ccgcatcgcc ggcaatcttt cggaactcgc gtggcattgt cagaatgtca cggatcattt
     2221 gtgacatgcg ctcgcgaatg gccgccgatc cgaacaccgg tcgtgcacgg cacaaggcca
     2281 tgtgttccca ggtccaggct tcgttgcgct ggtaccgctc gaaggcgtcg accgatacgg
     2341 tcaacattcc tttggcgcct tcgggacgaa gccgcgcatc gacgtcatag aggggaccag
     2401 ccgcggttgg cacgctaagt gcggccgtga cgcggctcga cagacgattg aaatagtcgt
     2461 tcggcccgag cggtttcgca ccgttggaag cgccgccctg caccgcactg tgcaaataga
     2521 tgacgtcaag atccgaagcg tgggtcagcg aatggccccc gagacggcca agtccaagaa
     2581 cgatgagctc cccaccgggg aactggccat gtgacttttc aaactccacg gtcgcagcac
     2641 gtccgagagc aacaagcgca ccctccgcaa cgcgcgcata tccttccgta acatcgagcg
     2701 gatcgcgccg gcgatcaatc aactgcacgc cgagcgcgaa gcgccgctca ttgacgagcc
     2761 gacgaacgcg atccagcgcg atgtcataag gatggccttc catggctttt ccgagcagcg
     2821 cagcgaagtc ttgcgcgacg ggcggcattg caaagcagga cgcatcgaat agtccctcga
     2881 aaagctccgg gcggcgacca agctgatcgg cgagcgccgg cgcatgcgcc aatattttcg
     2941 caaggagcct tgccagcggc ggacgggcct cgagcaagcg gaacaggtta attccgctcg
     3001 ataagcgatc gatgatgtca ccgagccgat tgagcgctct attggggtcg gcgccggcag
     3061 cgattgcgcg aagcagtccc ggcagcatcg cttcaaaggc ctgctgcgct gccggtgagc
     3121 ggagcgagcg ggatttgcca gaccgccagt cggtgacatg acgagcggcc gcgtcggtat
     3181 cggaaaagcc cagcgtcgcg agctcctcct tgagaatgag cggatcattc gacagacgcg
     3241 tgcttgggtc gggcgcaaga ctgtcgaata tcgtaccggc ttgctcgacg ttcggcgtga
     3301 gaagcttaag cagctcttca ccgtcactaa ccccatgcag ctcggcgaga ttattcagcg
     3361 cggcagctcc tgaagggagg agatgtgtct gcgcgtcatc aaccatctgg actcggtgct
     3421 cgatcgtgcg cagcaaccga tacgccgacg aaagctggtg cgcggtaagt tcatcaatcc
     3481 ggtttgcagc gcgaagcgcg tcaatcgcgt cgagcgttgc cggaactcgc accgacgtat
     3541 cgcgtccgcc gtgaatcatc tgctggatct ggacgaagaa ctcgacctcg cgaataccac
     3601 cgcgcccgcg cttcagatca taaccgggcc cgatatgagc accttgagcg aagtgatcac
     3661 gaattcgtgc cgagatctgg cgcacatcct cgatcactcc aaagtccagc gatcggcgcc
     3721 agacaaaagg ttggatcgca tcgagaaagc gccgtccaag ctccacatct ccagcagcgg
     3781 cacgcgcgcg gatgaatgct gcgcgctccc atggaagcgc gctcgactca taatgcgaga
     3841 ttgccgcatt gatcggaaga acgatcggcg tgacctcggg cgagggtcga agcctaagat
     3901 cgatgcgctg cacatagccg tcggcggttc gctcctggat gagcttgatg agccgccggc
     3961 caacgcgaac tgccgcttcg ccgggatcat cacggctccg gcgcggcagc gtctgcggat
     4021 cgaacaataa aagtagatca acatcggacg aataattgag ttcgcgactt ccaagcttcc
     4081 ccatcgcgat gatggtgaac cccttgaact gtgctccagg cacccgctcg agaaccgcca
     4141 gttcgaccgc ttcattgatt gcgtaatcag caaagtccga gagttcccga gtgaccttct
     4201 cgagaggaaa ttcatgcgaa aggtcaccaa gcgcgaccgc taaggcgagg ccgtagcgct
     4261 gcctccgcag cttggctgca aggtcctcac cagcacttgc aagcgcgcac tcgaccgcct
     4321 cttgcggtcc gaagcggaga aagctgtcgg cgatatcggg ccgcgcgaca attgcgtcgc
     4381 ggaggaatgg cgaatgctcc tgggcacgtc gaagcgcatt ttctcgcgcg ctcggcgcgg
     4441 ctgactcgct catggaatcc ttttcaatgt ttcgctcgcg actcggagga aacttccgcg
     4501 tgctgccgga cgttagcaat cccaatgaag ctggagcgag aatctctttc gtcgtcggat
     4561 atgagcagca tggaccgtag agttatccgc gtagacatgc ccccgacgca tgcgggcatc
     4621 accgccgctc ttcgccgcgc tttcgaggcg gcaggagcag gcgacgatgc acgacaattt
     4681 gctgatctgc ttcgcaggct gaactaaccg ctcgaccgct gccaacagtt ggccatcgag
     4741 cgggtgcaag ccctaatcgt ggtcccggct caagtcgtcg acttcgccca tgattgtctg
     4801 cagcgcggat ttgtctggat ccgtccgatg ctggcgccgc gacggcagct tgccgctcga
     4861 caaaagctgt tcgagggcga cgcgcccgcg ggccacgcgg ctcttaatcg ttccaaccgc
     4921 gcaaccacaa atctccgccg cttcctcgta agcaaatccg cccgcaccaa cgaggatcaa
     4981 ggcctcgcgt tgaggc
//
LOCUS       DASRBJ010000054         2992 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_461833,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000054 DASRBJ010000000
VERSION     DASRBJ010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2992
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461833"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..275
                     /locus_tag="VE968_01630"
     CDS             <1..275
                     /locus_tag="VE968_01630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50554.1"
                     /translation="TGFASQQRAQRVSPDRKDNLFEPVAGDHGARGSFDDEALDKSSE
                     LWISEHKKELGLAALGAAAVAGAGFMLAGRGKKQGERGRTKASAGS"
     gene            354..1196
                     /locus_tag="VE968_01635"
     CDS             354..1196
                     /locus_tag="VE968_01635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020820608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50555.1"
                     /translation="MAAAWILNRAWRPSKDRKLRAAECLGAGAAILCMSVALDSGIEH
                     YRGQFKDRAMFVGPAMALLGLAAAGYIAFRPAQAKARAPKIALLTVGATGLIGLGFHT
                     YNILKRPGELDALNLFYGAPMGAPAALTLAGLYGIIAGEMLSGRAYARTRLPKHTAGL
                     IAFSLFGTVAEAGLLHFRGAFQNPVMYGPVTIPPLAAVSVAASALSKAAIPTAEPLLK
                     ATAVLGIAGPIFHAYGIHRNMGGWRNWSQMILQGPPLPAPPAFLGIAVAGLGILPILA
                     GDQQ"
     gene            1193..1816
                     /locus_tag="VE968_01640"
     CDS             1193..1816
                     /locus_tag="VE968_01640"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HZU50556.1"
                     /translation="MSQFRTPYLTYDVLDKWDSPSWNRQTRSAISKRLNEVPERRFLG
                     PQEWSLLEAIVSRLIPQDDREEPVPIVPWIDDMLHHNRTPGFRYSDMPPMRDAWRHGL
                     AAIAAEARNRHGHEFEELSPAEQDELLRDLEQNRVETRYWGDLPPGGFFKHHLLKEVV
                     GVYYSHPAAWSEIGYGGPASPRGYARLGLDERDPWEAEELVSERSNA"
     gene            1809..>2992
                     /locus_tag="VE968_01645"
     CDS             1809..>2992
                     /locus_tag="VE968_01645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020820606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase N-terminal
                     domain-containing protein"
                     /protein_id="HZU50557.1"
                     /translation="MLDVDRPRARDGRAPDVFREGKWVPMQCCRDEEEVDFAIVGTGA
                     GGGTLACKLAEAGFSVVAFDAGPFWRPLEDFVSDENWQGGLYWTDDRITGGADPVELG
                     ANNSGRGVGGSTVHYTMIALRWRPEWFKCRSTLGYGRDWPISFDELEPYYEEAEEALK
                     ISGPLHYPWGKRRKRYPYRAHPVNAPGLVMARGCERIGVKWSPVPLATLSAPRGLAHP
                     CVYRGFCAYGCSTNAKQSVLVTFIPRAIKAGAEIRDLAMVGKIEIGKDGRASGLTYSR
                     DGKWHHQKARNVVVAGYAIETPRLLLNSACNQFPDGLANENGLVGTHVMIHSGPGVWA
                     TMEEQVRQYKAPPCMVVTEHWNYDDGDAKDFHGGYAFMSQGPLPVGWAQAMSVQRGLW
                     GVA"
BASE COUNT          562 a          936 c          954 g          540 t
ORIGIN      
        1 caaccggctt tgcttcgcag caacgagcgc aacgggttag tcctgatcgc aaggataatc
       61 tcttcgagcc cgtcgccggc gatcacgggg cacgcggaag cttcgatgac gaagccctcg
      121 ataaaagcag cgagctctgg ataagcgagc acaagaaaga gctgggtctc gctgcgctcg
      181 gagcagccgc cgtcgctggt gcggggttca tgcttgccgg tcgcggcaag aagcaggggg
      241 aacggggacg aaccaaagca agcgccggga gctgagcctt gctgcaccgt tccagtccag
      301 aaccctcgaa tcgcccgctt atcgccgttg gagcggctgg aatcgccgcg gccatggccg
      361 cggcgtggat tttgaaccga gcatggcggc cgtcaaagga ccgcaagctt cgcgctgccg
      421 aatgccttgg agccggcgca gcgatcctgt gcatgagcgt cgcgctcgac agcggcatcg
      481 aacattaccg tgggcagttc aaagaccgcg caatgttcgt cggcccggcg atggcgctcc
      541 tcgggctcgc tgcagcgggc tatattgcat tccgcccggc gcaagcaaag gcgcgcgcgc
      601 ccaaaatcgc gctgttaacc gtcggtgcaa cgggactgat cggtcttggc ttccacacct
      661 acaacatact gaagcggccc ggtgaactcg atgcgctgaa cctcttctac ggggcgccaa
      721 tgggcgcacc agcggccctg acgctggcgg ggctttacgg catcatcgct ggcgagatgc
      781 tgagtggacg tgcctatgcg cggacccggc ttcccaagca cacggccggt ctcatagcct
      841 tctcgctatt tggtaccgtt gccgaagccg ggctgctcca cttccgaggc gcgttccaga
      901 atcccgtcat gtatggaccg gtgacaatcc cgccgctcgc tgccgtctcg gtcgccgctt
      961 ccgccttgtc aaaagctgcc attccgactg ctgagccatt gctcaaagcg acggcagtgc
     1021 tcggcatcgc cggacccatt ttccatgcct acggcatcca ccgaaacatg ggcggctggc
     1081 gcaactggag ccagatgatt cttcaggggc caccgctccc cgcgccgccc gcattcctcg
     1141 gcattgccgt tgctggtctc gggattctgc caatactcgc gggggaccag cagtgagcca
     1201 gtttcgaaca ccgtacctga cctacgacgt gctcgacaaa tgggattcgc catcgtggaa
     1261 caggcagact cgctcggcga tcagtaagcg cctcaacgag gtcccggagc ggcgctttct
     1321 agggccgcag gaatggtcgc ttctcgaggc gatcgtcagc cgcctgatac cgcaggacga
     1381 tcgcgaagag ccggtgccga tcgtgccatg gatcgacgat atgctgcacc acaaccgcac
     1441 gcccggcttt cgctattcgg acatgccgcc gatgcgcgat gcctggcgtc acggtcttgc
     1501 ggcgatcgcc gccgaggcaa gaaaccgcca cggacatgag ttcgaagagc tttcgccggc
     1561 tgagcaggac gagcttcttc gcgatctcga gcagaatcga gtcgagactc gttattgggg
     1621 tgatcttccg cccggcggct tcttcaagca ccacctgcta aaggaggtgg tcggggtcta
     1681 ttattcccat cccgcagcct ggagcgagat cggctacggc ggtccagcaa gccctcgcgg
     1741 ttacgctcgg ctcggcctcg acgaacgtga tccgtgggaa gccgaagagc tcgttagcga
     1801 gcgcagcaat gcttgacgtc gatcgtcctc gcgcgcggga cggccgcgct cccgacgtgt
     1861 ttcgagaggg caagtgggta ccgatgcaat gctgccgcga tgaggaggag gtcgactttg
     1921 caattgtcgg caccggcgcg ggtggaggca ctctcgcctg caagctcgcc gaggcgggat
     1981 tttcggtcgt tgcctttgat gctgggccgt tctggcggcc gctcgaggac tttgtctccg
     2041 acgagaattg gcagggcggg ctttactgga cggatgacag gatcacgggc ggcgccgatc
     2101 cagtcgaact cggcgccaac aacagcggtc gcggtgtcgg tggaagcacg gtccactaca
     2161 cgatgatcgc gctccgctgg cgacccgagt ggttcaagtg ccgctcgaca ctcggctatg
     2221 ggcgcgattg gccgatcagc ttcgatgaac tcgagcctta ttacgaggag gcggaggaag
     2281 cactcaagat ttcggggccg cttcactacc cctggggcaa gcgccgcaag cgctacccct
     2341 atcgcgcgca tccagtgaac gcccccgggc tcgtgatggc acgcggttgc gaacgcatcg
     2401 gcgtcaaatg gtcaccagtt cccctggcaa cgctttcggc acctcgcggc ctcgctcatc
     2461 cctgcgtcta ccgcggcttt tgcgcttatg gctgctcgac gaatgcaaag cagagcgtgc
     2521 tggtaacgtt cattccgcgt gcgatcaaag cgggcgcgga aatccgcgac ctcgccatgg
     2581 tcggaaagat cgaaatcgga aaagatggca gggcgtcggg actaacctac agccgtgacg
     2641 gcaagtggca ccaccagaaa gcgcggaacg tcgtcgtcgc gggctatgcg atcgaaacgc
     2701 cgcggctcct cctcaattcc gcctgcaacc agttccctga tggactggca aacgagaacg
     2761 gactcgtcgg cacgcatgtg atgatccact ccgggccggg cgtttgggcg acgatggaag
     2821 agcaagtgag gcagtacaag gcgcctccat gcatggtggt caccgaacat tggaattacg
     2881 acgatggcga cgccaaagac ttccacggag gctatgcctt catgagccag ggccccctcc
     2941 cggtcggctg ggcgcaggcc atgtcggtgc agcgcggact ctggggcgtg gc
//
LOCUS       DASRBJ010000055         2502 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_259692,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000055 DASRBJ010000000
VERSION     DASRBJ010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2502
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259692"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1184)
                     /locus_tag="VE968_01650"
     CDS             complement(<1..1184)
                     /locus_tag="VE968_01650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007163892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HZU50558.1"
                     /translation="MTLSWSFAVDRGGTFTDVVARASDGRLRVEKLLSENEGEYEDAA
                     LEAIRRVLNEEGGSVAEVRMGTTVATNALLERKGERVALAITRGFGDALRIGYQARPD
                     IFARHILLPTMLYERVIEIGERVAVDGNVLVPLDEIEARSLLKSVKDEGIDALAIILL
                     HGWKFTEHEARLARIARELGFSQISASHDVAPLIKLVGRGDTTVVDAYLSPVLRRYVD
                     KVSAGLPKHSDLHFMQSNGGLAEAAAFRGKDAILSGPAGGVVGMVAASEAHGSDRLIG
                     FDMGGTSTDVSHYAGTFELSDESLVAGVRIRAPMMQIHTVAAGGGSICSFDGMRFRVG
                     PESAGANPGPACYRRGGPLTVTDCNLFLGRIDPAQFPAVFGPRGDQPLDRDAAARRLQ
                     EVA"
     gene            1237..2235
                     /locus_tag="VE968_01655"
     CDS             1237..2235
                     /locus_tag="VE968_01655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006954475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HZU50559.1"
                     /translation="MAVLVTGAAGFIGAATSRALLERGDEVIGIDNLNDYYDPALKRA
                     RLDELGRSHAKRFAFIQLDFADWQGLNDSLAGTTIDGIVHLGAQAGVRYSIQNPHAYV
                     HSNLVGHCNMLELARARRKHMVYASSSSVYGGNKQLPFRVEDRVDHPLSLYAATKKAD
                     ELLSESYANLYRMELTGLRFFTVYGPWGRPDMAMWIFVRALYAGEPLPLFNGGAMRRD
                     FTYIDDVVDGIVACLDAPPRDDGMPKPGGSTAPHAVYNIGNSRSENLMRLVALLEEAT
                     GRKALLEPRPMEPSDVPETFADISAIARDHGFQPRTSLDEGVPRFVSWYRDYHGLK"
     gene            2232..>2502
                     /locus_tag="VE968_01660"
     CDS             2232..>2502
                     /locus_tag="VE968_01660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HZU50560.1"
                     /translation="MSLPPILRNLRIPVIGSPMFIVSNPKLVIAQCTSGIVGSFPALN
                     ARPAALVDEWLHEITETLASWNSTNPERPAAPYAVNQIVHRSNDRF"
BASE COUNT          510 a          800 c          723 g          469 t
ORIGIN      
        1 gcaacctcct gcaggcgacg cgctgcagcg tcacgatcaa gcggctgatc accacgaggc
       61 ccaaagacag cggggaattg cgcggggtca atacgcccaa ggaacagatt gcaatcggtc
      121 accgtcaacg ggccgcctct acgataacag gcaggcccag gatttgcgcc ggcactttcg
      181 ggtccgaccc ggaaacgcat gccatcgaag ctgcagatgg agccgccgcc cgcggcaacc
      241 gtgtggatct gcatcatcgg cgcccggatc cgaacaccag cgacgaggct ctcatcggaa
      301 agctcgaagg ttcccgcgta atgcgagacg tcggtcgacg ttccgcccat gtcgaagccg
      361 atcagccgat cgctgccatg cgcctcgctc gcggcaacca ttccaacgac accccctgca
      421 gggcccgaaa gaattgcatc cttgccacga aaggctgcgg cctcggcgag accgccgttc
      481 gactgcatga agtgaagatc tgaatgtttg ggcaaacctg ccgaaacctt gtcgacatag
      541 cgccgcaaca cgggcgacag ataggcgtcg acgaccgtgg tgtcaccgcg gccgacgagc
      601 ttgatgaggg gtgcgacgtc atggcttgcc gatatttggg agaagccaag ttcacgcgcg
      661 atgcgggcta aacgggcttc gtgctcggtg aacttccagc cgtgcagcaa tatgatcgca
      721 agcgcgtcga tcccttcgtc cttcaccgac ttcagcaatg atcgcgcttc gatttcgtcg
      781 agcggcacga gcacattgcc atcgacagca acgcgctcgc cgatctcgat cacgcgctcg
      841 tagagcatcg tcggcagcag gatgtgacgc gcgaatatgt ccggccgagc ctgatatcca
      901 atcctcagcg cgtcgccgaa accgcgcgtg atcgcaagcg caacacgttc acccttgcgc
      961 tcaagaagag cattggtcgc aaccgtcgtc cccatgcgaa cctcggcgac gcttccacct
     1021 tcctcgttga ggactcggcg gattgcctcg agcgcggcat cctcatactc gccctcattc
     1081 tcggaaagca gcttttcgac cctcaggcgg ccgtcggacg cgcgcgcgac aacgtcggtg
     1141 aaggttcccc cccgatcaac ggcaaagctc cagctcaatg tcatgttgga cctctagggc
     1201 ttttcagcac gcagctgcac cccctaagga aggaccatgg ctgttctggt cacgggggct
     1261 gctgggttca ttggcgcggc gacgtcgcgc gccttgctcg aacgcggcga tgaagtaatc
     1321 ggcatcgaca acctcaacga ctattacgac cctgccctga agcgagcgcg cctggatgag
     1381 cttggacggt cccatgcaaa acgttttgcg ttcatccagc tcgactttgc cgattggcaa
     1441 ggtctcaacg acagccttgc cgggaccacg atagacggaa tcgttcacct cggcgcccag
     1501 gcgggcgtcc gctacagcat ccaaaatccg catgcctatg tgcactcgaa cctcgtcggg
     1561 cactgcaaca tgctcgaact tgctcgagcc cggcggaagc acatggtcta tgcatcatcc
     1621 tcgtcggttt atggcggcaa caagcaattg ccgttcaggg tcgaggaccg cgtcgatcac
     1681 ccgctttcct tgtatgcggc aacgaagaag gccgacgagc tcctcagcga aagttacgcc
     1741 aacctctacc ggatggagct cacgggtctg cgattcttca ctgtctacgg cccgtgggga
     1801 cgtcccgaca tggcgatgtg gatctttgtg cgggcacttt acgcggggga accactgccg
     1861 ctgttcaacg gcggtgcgat gcgccgcgac ttcacctata tcgacgatgt cgttgacggt
     1921 atcgtcgcct gccttgacgc accgccaaga gacgacggaa tgccgaagcc cggcgggagc
     1981 actgctccac acgccgtgta caacatcgga aacagccgca gtgagaatct gatgcgcctt
     2041 gttgcgttgc tcgaggaggc gacaggcagg aaggccttgc tggaaccgag gcccatggag
     2101 ccgagcgatg tgcccgagac gttcgccgac attagcgcga ttgcgcgcga tcatggcttc
     2161 cagccaagaa ccagccttga cgaaggtgtc ccccggttcg tcagttggta ccgcgattat
     2221 catggactga aatgagcctt ccgccaattc ttcgcaacct gcggattccc gtgatcggct
     2281 cgccgatgtt cattgtttcc aatccgaaac tcgtcattgc gcaatgcacg agtggcattg
     2341 tcggcagttt ccccgcgctg aatgcgcgtc ccgccgcatt ggtcgacgag tggttgcacg
     2401 agatcaccga gacgctggca tcctggaact ccacgaaccc cgagcggccg gccgctcctt
     2461 atgccgtgaa ccagatcgtt caccgctcga atgaccgctt cg
//
LOCUS       DASRBJ010000056         4630 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_157705,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000056 DASRBJ010000000
VERSION     DASRBJ010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4630
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157705"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..660
                     /gene="hemA"
                     /locus_tag="VE968_01665"
     CDS             <1..660
                     /gene="hemA"
                     /locus_tag="VE968_01665"
                     /EC_number="2.3.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003870 - 5-aminolevulinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-aminolevulinate synthase"
                     /protein_id="HZU50561.1"
                     /translation="SVYSMDADIAPISEICDLADKYNALTYLDEVHAVGMYGEHGGGI
                     SERDQVAQRLTIIEGTLGKAFGVMGGYIAANQTIIDCIRSYAPGFIFTTSLSPVLVAG
                     ALASVRHLKRSNDERRAQQEAAAMLKAKFAAAGLPAMPSSTHIVPLLVGCPVKAKKIS
                     DILLAEYGLYVQPINFPTVPRGTERLRFTPGPGHSPQMMDELVAALSEIWSRLELRKA
                     A"
     gene            662..1444
                     /locus_tag="VE968_01670"
     CDS             662..1444
                     /locus_tag="VE968_01670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50562.1"
                     /translation="MNMEKTVRGSSDTSVRERLIAAVDRAELRTSPFDHIYMTNVLDR
                     KSYEMLLDEMPDRSFYHELRHQDALRGDGSSTRLRMYLYPELLRQLPEKQQSAWAPIA
                     EALCSRELELAFKRKFRRSLQERFGKPAEKIGLYPIPILLRDQPGYRIGIHSDVKKKA
                     ITVQFYLPPDEAQRHIGTIFHEGKDGEAAKKTTQMPFMPASGYAFPVALTKSWHSAAA
                     TNADDGERVSMMVTYYVADSFARRLYWKARRALLSLGLHSNH"
     gene            1571..2017
                     /gene="rpiB"
                     /locus_tag="VE968_01675"
     CDS             1571..2017
                     /gene="rpiB"
                     /locus_tag="VE968_01675"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HZU50563.1"
                     /translation="MRIALAADHAGYILKDELAQWLREQGHDVTDLGTNGPQSVDYPE
                     FGAKLGSYVGLGKAERGIAVCGSGIGISIAVNRNLECRCARVSDPLSAALAREHNDAN
                     VIALGARLIGSDMAKACVAAFLETDFAGGRHEHRVAQLSHLLQESD"
     gene            2017..3336
                     /gene="glyA"
                     /locus_tag="VE968_01680"
     CDS             2017..3336
                     /gene="glyA"
                     /locus_tag="VE968_01680"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HZU50564.1"
                     /translation="MATAAELRRDVTYRVPTGFFTSGLSEKDSAVEDAIHAELRREQT
                     QIELIASENIVSRAVLEAQGSVLTNKYAEGYPGRRYYQGCAPSDAIETLAIERAKKLF
                     GCAFANVQPHSGAQANGAVMMALLKPGDTIMGLSLAAGGHLTHGAPPAQSGKWFNAVQ
                     YGVRPDDHLVDFDEVERLAKEHRPKLIIAGGSAYPRHFDFARFRAICDEVGALFLVDM
                     AHFAGLVAAGEHPTPFGHAHVVTTTTHKTLRGPRGGMVLTNDEDIAKKINSAVFPGLQ
                     GGPLMHVIAAKAVAFGEALQPEFKDYAKAVIANAKTLAEGLKNRGADLVAGGTDTHLA
                     LVDLRPLGLTGKDADESLERAGITCNKNGVPFDPLPPVKTSGIRVGSPAGTTRGFGQT
                     EFRAIAEMVADVLDGLVKNGIENNGSVEREVNQRVRDLCARFPIYQG"
     gene            3339..3821
                     /gene="nrdR"
                     /locus_tag="VE968_01685"
     CDS             3339..3821
                     /gene="nrdR"
                     /locus_tag="VE968_01685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011414056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HZU50565.1"
                     /translation="MRCPFCAHEDSQVKDSRPSEDGAAIRRRRQCEACGARFTTFERV
                     QLRDLTVVKKDGKREPFDRDKLARAIGHACRKRDIDATRIDRLVSGVQRQMETLGDEV
                     RSARIGEAVMAGLRALDHVAYIRFASIYKDFSDPGDFAEIAERVEKEATPPPGHDKLL
                     "
     gene            3818..4543
                     /locus_tag="VE968_01690"
     CDS             3818..4543
                     /locus_tag="VE968_01690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HZU50566.1"
                     /translation="MSGSSKPVIVLVRPQLGQNIGKAARAMLNFGLTEMRLVAPRDGW
                     PNPDAGPAASGADIVLERARVYDSVKDAISDCSLVFASTVRRRDLVMPVVRPEEMSER
                     ISNASERSAILFGPERSGLETEDVALANAIVTVPINPEFGSLNLAQAVILLAYEWSKQ
                     SDLAQPTAKELEPPAPHGELEGLIGQLNEELEAKGYFHPPSRTEATKNTLRTIFTKSG
                     WSSREIKAIRGVVRALVGPKRHH"
BASE COUNT          957 a         1413 c         1388 g          872 t
ORIGIN      
        1 agcgtctatt cgatggacgc tgatatcgcc ccgattagcg agatctgcga tttagccgac
       61 aagtataacg cgctcactta tctcgatgaa gtccatgccg tgggcatgta tggcgagcat
      121 ggcggcggta tttccgagcg cgaccaggtc gcccagcgcc tgacgatcat cgaaggaact
      181 cttggaaagg cattcggcgt tatgggcggc tacattgccg cgaaccagac gatcatcgac
      241 tgcattcgaa gctacgcacc gggcttcatc ttcacaacga gcctttcgcc tgtccttgtc
      301 gccggtgccc tcgcaagcgt ccgtcacctc aagaggtcga atgacgagcg tcgcgcgcag
      361 caggaagcgg cggccatgct caaggccaag tttgcagccg ccgggctgcc ggcgatgccg
      421 agctcaacgc acatcgtgcc gcttctcgtc ggttgccctg tcaaagcgaa gaagatcagc
      481 gacattcttc tcgccgaata cgggctctac gtgcaaccga tcaatttccc gacggtacct
      541 cgcggaaccg agcggctgcg cttcacgccg gggcccggac actcgcctca gatgatggat
      601 gagctcgttg ccgcgttgag tgagatctgg agccgcctgg agcttcgcaa ggccgcttaa
      661 catgaacatg gaaaagacgg tccgaggcag ctccgacacg agtgtaaggg agcggctcat
      721 cgcggccgtg gaccgggcag agcttcgcac gtcaccgttc gatcatatct acatgacgaa
      781 cgttctcgat cgcaaaagct acgaaatgct cttggacgag atgcccgacc gttcgttcta
      841 ccatgagttg aggcaccagg acgcgttgcg cggcgacgga agcagtacgc gccttcggat
      901 gtatctttat cccgagcttt tgcggcaact tccggaaaaa cagcaaagtg cctgggcgcc
      961 gatcgccgag gcgctgtgct cgcgcgaact cgaactcgcg ttcaagcgca agttccgccg
     1021 ctcacttcaa gaaaggttcg gcaagcctgc cgaaaaaatc gggttgtacc cgataccaat
     1081 cctgcttcgc gatcagccgg gctatcgcat tggcattcac agcgacgtca agaagaaagc
     1141 aatcaccgtc caattctatc taccgcccga cgaggcccag cgacacatcg gcacgatctt
     1201 tcacgaggga aaggacggcg aagcggccaa gaagacgacg caaatgccgt tcatgccggc
     1261 aagtggctac gcgttcccgg ttgcactcac gaaaagctgg cacagtgcag ccgcaacaaa
     1321 cgccgacgac ggcgagcgcg tgtcgatgat ggtgacctat tatgtcgccg acagctttgc
     1381 ccgccgactt tactggaaag cacgacgggc attgttgtcg ctcggtcttc actcgaacca
     1441 ctgacaagga ggctgctgcg attgcgccgg cccaagctct gccgagcaaa gcggcgctcg
     1501 tcttcgagag cgttggttga ttgcttggcg gcactggcga atccagccgt cctgccctac
     1561 ttcaaccacc atgcgcatcg cccttgccgc cgaccatgct ggctacatcc tcaaagacga
     1621 gcttgcgcag tggctgcgcg aacagggtca cgatgtaacc gatcttggaa caaatggtcc
     1681 ccaaagcgtc gattatccgg aatttggcgc gaaactcggg tcctatgttg gactcggcaa
     1741 agccgagcgc gggatcgcag tctgcggcag cggcatcggg atctcgattg ccgtcaaccg
     1801 caatctcgaa tgtcgctgcg ctcgtgtcag cgatcccttg tcggccgcgc tcgcgcgcga
     1861 acacaatgac gcgaacgtga tagcgctcgg cgcgcgcctt attggaagcg acatggcgaa
     1921 ggcctgcgtc gccgcttttc tcgagacgga cttcgccggc ggccgacacg agcacagggt
     1981 cgcccaactt tcacatctcc tgcaggaatc cgactgatgg ctacagccgc tgaactccgt
     2041 cgcgacgtca cctatcgcgt tccaaccggc ttctttacga gcggtcttag tgaaaaggac
     2101 agcgccgtag aggacgcgat ccacgccgag cttcgccgcg agcagaccca gatcgagctc
     2161 atcgcttccg aaaacattgt gagcagagcg gtcctcgagg cgcagggctc ggttctgacc
     2221 aacaaatatg ccgaaggata tcccggccgc cgttattacc agggttgtgc accgtcggat
     2281 gcgatagaaa cgctcgcaat cgagcgggcg aagaagctct ttggctgcgc gtttgcgaac
     2341 gtgcagcccc attcgggcgc gcaggccaac ggagcggtca tgatggccct gttgaaaccc
     2401 ggcgacacca tcatggggct cagtctcgcc gcgggcggcc acctcacgca tggagcgcct
     2461 cccgcccagt cgggaaaatg gttcaatgcc gtccaatatg gcgttcggcc cgatgaccat
     2521 ctcgtcgact tcgacgaggt cgagcgtctc gcgaaggagc atcgtcccaa gctcatcatt
     2581 gctggcggct cggcttatcc tcgccatttc gactttgctc gtttccgagc catctgcgac
     2641 gaggttggcg cgctctttct cgtcgacatg gcgcactttg ccgggctcgt tgccgcgggc
     2701 gagcatccaa ctccattcgg tcacgcgcat gtcgtgacga caaccaccca caagacgctt
     2761 cgcggacccc gcggcggcat ggttctcacc aacgacgagg acattgccaa gaagatcaac
     2821 tcggccgttt tccccgggct ccagggcggt cctttgatgc acgtcattgc ggcaaaggcg
     2881 gtcgcgttcg gcgaagcgct gcagcccgag ttcaaggact atgcaaaggc agtgattgca
     2941 aacgccaaga cactcgccga gggattgaaa aatcgcggtg ccgatctcgt cgccggtgga
     3001 accgatacgc acctcgcgct tgtcgatttg cggccgctcg ggctcaccgg caaggatgcg
     3061 gacgagagcc tcgagcgcgc aggaatcacc tgcaacaaga acggtgttcc gttcgatcct
     3121 cttccacccg tcaagacgag cggcatcagg gttggatcgc cggccggcac tactaggggg
     3181 ttcggccaga ccgagtttcg cgcgatcgcg gaaatggtcg cggacgtgct tgacggtctc
     3241 gtcaagaacg gcatcgagaa taatggctcg gtcgagcgtg aggtcaacca gcgggttcgt
     3301 gatctctgtg cccggtttcc gatctaccag ggataagaat gcgctgcccg ttctgcgctc
     3361 acgaggatag ccaggttaag gacagccgcc ccagcgagga cggcgccgcg atccggcgtc
     3421 ggcggcaatg tgaggcctgt ggtgcccggt tcacgacctt cgagcgcgtg cagttgcgcg
     3481 atctcaccgt cgtcaagaag gatggcaagc gcgagccatt cgaccgtgac aagctggcac
     3541 gcgcaatcgg tcacgcgtgc cgcaagcgcg acattgacgc gacccgcatc gatcgcctcg
     3601 tcagcggcgt tcaacggcag atggaaacgc ttggcgacga agtgcgatca gctcgcatcg
     3661 gtgaagcggt aatggcgggt ctgcgggcac tcgatcacgt cgcctacatt cgctttgcga
     3721 gcatctacaa ggatttcagc gaccccggcg atttcgccga gatcgccgag cgtgtcgaaa
     3781 aggaagcaac gcctccgcca ggacacgaca agctgctgtg agcgggtcca gcaagcctgt
     3841 catcgtgctc gtgcggccgc agcttggcca gaatatcggc aaggcagcgc gcgcgatgct
     3901 caacttcgga cttaccgaaa tgcggctcgt cgcgccgcgt gatggctggc ccaatccgga
     3961 tgccggcccc gcggcgagtg gcgcggacat cgtgcttgag cgcgcgcgcg tctatgacag
     4021 cgtcaaggat gcgatcagcg attgctcgct tgtatttgca tcgacggtgc gacgacgaga
     4081 cctcgtgatg ccagtcgtcc gacccgagga aatgagcgaa cggatttcca atgcgagcga
     4141 gcgttcagcg atcctcttcg gcccggaacg ctcgggcctt gaaaccgaag atgtcgcgct
     4201 tgccaatgca atcgtgaccg tcccaatcaa tccggaattt gggtcgctca accttgccca
     4261 ggccgtgatc ttgctcgcct acgagtggtc gaagcaaagt gaccttgccc agccaaccgc
     4321 caaggagctg gagcctccag caccccacgg ggaattggag gggctcatcg gtcagctgaa
     4381 cgaggaactt gaagcgaagg gttatttcca tccgccgtcg cgaaccgaag caacgaagaa
     4441 cacgcttcga acgatcttca ccaagtccgg ctggtcttcg cgcgagataa aggcgatccg
     4501 gggcgtcgtc cgagcgctgg tcggacccaa gcgccatcat tgatccaata ggctgctcct
     4561 gagcattgac gtgtttattt agctaggttc tcgtctatgg tgaaaagttc agagaaatag
     4621 tctcttgggg
//
LOCUS       DASRBJ010000057         5553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_411638,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000057 DASRBJ010000000
VERSION     DASRBJ010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5553
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411638"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2821
                     /locus_tag="VE968_01695"
     CDS             <1..2821
                     /locus_tag="VE968_01695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018075739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU50567.1"
                     /translation="SSQAVLTGSASGAAAQPVPPPATAPAATPTGTPGNSNDVIVITG
                     SYARSIANANTIKKRAVNVVEAISAEDIGKLPDVSITDSLSRLTGVAVQESAGRAKYI
                     SIRGFGPDYTTATLNGRIIATVDDNRRFDYGQYPGDLFQEIEVIKTPSADLINFGLAG
                     TVNLQTYDPLTQKNTLALNVQGEVDQYHKLNPDGSNTGYKGSAIYMHKFADDTLGVSL
                     GFSAIKDPTQDYHWATGGGNGNYYGPTSRDALGNIGPDDIQNYVNTNTLYRQSGFGHI
                     VYRPDSPFEMSVDALYTQSKLRELSRGWEMPLASWSRDTEVPGSETSSNGYVTSEQWN
                     VYPVLRNDFNTSNGKTLALGANIKYHFSDDLKFVLDANYSRAKRHDNTYEIYGGSTTK
                     PGLATVTRLPDGTYGVNIAGIDYASTSDVSLTDPQGWNQVGFNNVPDFKDTVKGLRAE
                     LDGDLHGGFFRGWEAGVNYSDETKVSNYSGYFICLPGPASVGGCGNDNALGTSVAIPS
                     SIIEGQVEPFAVTGTDLIALNSIGAQGILRTAPQSDASNVARDWTVEEKILTGFLQAN
                     FDTGEGAPLRVSGNLGAQLVHTNQSSVGFGATSATTVIAQSGGAKYNYLLPSANVNIG
                     VAPNTILRLAASRSLARATMDDENASYSVSSCGTTNNVPTGCTTVPPINGKLAVLQGQ
                     GGNPYLRPYLSTNADVSLEKYFMHDRGKIAVAAYYKRITNFTTQNLNLNSGNINSNGP
                     QDTSAFTADCSAFSGLLNGATLAANQTYSCWSTAPTNDGKGWVFGYEASGTIPLNVLT
                     PVLDGFGIIGQYAHTASKIKFSNGSAITLPGLSRSVYQAQIFFEKWGFNARASLTHRA
                     PFLGDYTLFNAQVTANLTKAQTTLDAQIGYDFKSGPLNGLSIYVQGHNLTNPVLTSYV
                     NADPKEVNIRDQFGATYLAGATFRF"
     gene            2904..4403
                     /locus_tag="VE968_01700"
     CDS             2904..4403
                     /locus_tag="VE968_01700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008067148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan halogenase family protein"
                     /protein_id="HZU50568.1"
                     /translation="MSDGPFRILVVGGGTAGWLAAAVCARFLPARLYSIALIESDEIG
                     TVGVGESTIPQLQLVNAALGIDEDEFMRATHATYKLGIEFAGWGSAEDRYIHAFGDCG
                     RPVGQTPFHHFWLRGLRLGETAPLDAYCLNATAAYAGRFERADRAQSKMMGGLVHAFQ
                     FDAGLYGQFLRRYAEARGVQRVEGRITHAELDPETGDVDNVVLDDGRKYGADLFLDCS
                     GFRGLLIEEALHTGYESWTNLLPCDRALVVQSEALAKITPYTRASAKRAGWQWRIPLQ
                     DRVGNGHVYCSAVMGDDEAASVLLHDLNGSALSDPRILHFATGRRKAFWNRNVVALGL
                     AAGFLEPLESTSIHLVQSAIERVLKFLPNGRVKGADVESYNAQTVFEWERVRDFIALH
                     YHANSRPEPFWRNCAAMAIPDSLSEKLALFRANGRITRFNEELFAEVGWLQVMIGQGI
                     KPEGYHPLANAPSDTELREFLSLLRQTVAKHVAGLMTHDAWLRQHCWAS"
     gene            complement(4400..5074)
                     /locus_tag="VE968_01705"
     CDS             complement(4400..5074)
                     /locus_tag="VE968_01705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6445 family protein"
                     /protein_id="HZU50569.1"
                     /translation="MPSVRVVHIGQERQPVLVIDDFVPDPGALRAKAEVLDYRPMGRH
                     YPGLRAEVEVGDVDAYLEPVQMLIADVFGFCEAAAVISAGYSIVTTRPRELTPIQRLP
                     HFDGFEAERIALLHYLDGAERGGTAFYRHRGTGFEAITADRHADYDAALRRDVARHGL
                     PAPAYISGSTPIFEQTARFEARPNRALVYRGHLLHCADLPPDLDFSPDPRRARLTVNT
                     FLMGKP"
     gene            complement(5078..>5553)
                     /locus_tag="VE968_01710"
     CDS             complement(5078..>5553)
                     /locus_tag="VE968_01710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017668735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tryptophan 7-halogenase"
                     /protein_id="HZU50570.1"
                     /translation="SLHLVQMGIERLLRLLPDRNHDPLNAEEFNRATVNEWERIRDFL
                     ILHYYANNRPEPFWRQCAAMTIPDELAYKIKHFAAHARLVSPDDELFRNASWLAVYLG
                     QGLIPRGYDPLADLRPQVDAPRELRKLRGLMRAAAKTFPTHDEFIARHCRAAELV"
BASE COUNT         1133 a         1686 c         1672 g         1062 t
ORIGIN      
        1 aagctcgcag gcagtgttga caggctcagc ctcgggtgcc gctgcgcagc ccgtgccacc
       61 gccagcgacg gcgcccgctg cgacaccgac gggaacgccg ggtaattcca acgatgtgat
      121 tgtgattacc ggttcttacg cccggtcaat tgccaatgcc aacacgatca agaagcgcgc
      181 agtcaatgtc gtcgaggcta tctccgctga agatatcggc aagcttcccg acgtatctat
      241 tacggattcg ctctcccgct tgaccggcgt ggcggtccag gaatctgccg gtcgtgcgaa
      301 atacatctcg atccgcgggt ttggccccga ctatacgacc gcgacgctga acggtcggat
      361 cattgccacc gtcgacgata accgccgctt cgattacggc cagtatccgg gcgacctctt
      421 ccaagaaatc gaggtcatca agacaccctc ggccgacctc atcaactttg gtctcgcggg
      481 tacggtcaac ctccagacgt atgacccgct gacgcagaag aacactttgg cgctcaacgt
      541 ccaaggcgaa gtggaccaat accacaagct caaccccgac ggctcgaaca cgggctacaa
      601 gggttcggcg atctacatgc acaagttcgc tgatgacacg ctcggcgttt ccctcggatt
      661 ctcggcaatc aaggatccga cccaggacta tcactgggca accggcggcg gcaacggcaa
      721 ctattatggc ccgaccagcc gcgacgcact cggcaatatc ggtccggacg atatccagaa
      781 ctacgtcaat acgaacacgc tctatcgcca gtcgggcttc gggcacatcg tctaccggcc
      841 agacagcccg ttcgagatgt ccgtcgacgc actctacact caaagcaagt tgcgcgagct
      901 atcgcgcggc tgggaaatgc cgcttgccag ttggagtcgg gacaccgagg tacccggcag
      961 cgagacgtct tcgaacggct acgtgacgtc cgaacagtgg aacgtctatc ccgtgctgcg
     1021 caacgatttc aacacgtcga acgggaagac gttggcgctc ggcgccaaca tcaaatatca
     1081 cttttcggac gacctcaagt tcgtgctcga cgcaaactat tcgcgggcga agcgccacga
     1141 taacacgtac gagatttacg gcggcagcac cacaaagccc ggcctcgcga cggtcaccag
     1201 actacccgac ggcacctatg gcgtgaacat cgccggcatt gattatgcca gcacctccga
     1261 tgtctcgctc actgacccgc agggatggaa ccaggtcggc ttcaacaacg tgccggactt
     1321 caaggacacc gtgaagggcc tacgcgccga actcgacggc gacctccatg gcggtttctt
     1381 caggggctgg gaagccggag tgaactatag cgacgagaca aaggtctcca actattcagg
     1441 ctatttcatc tgtttgccgg gaccagcgtc cgtgggcggc tgcggcaatg ataatgcact
     1501 cggcacgagc gtcgccatcc cgtcctcgat catcgaagga caggtagagc ccttcgcagt
     1561 gacaggcacc gacttgattg ccctcaactc aatcggcgcg cagggcattc tccggacggc
     1621 gccgcagtcg gacgcgagca atgtcgcgcg cgattggacg gtcgaggaaa agatcctgac
     1681 gggattcctt caggccaatt ttgataccgg cgagggcgcg ccgctgcgcg tctcgggcaa
     1741 tctcggcgca cagctggtac acaccaacca gagttcggtc ggtttcggcg cgacgtcggc
     1801 cacgacggtt atcgcgcaaa gcggtggagc gaagtataat tacctgctgc cgagcgcgaa
     1861 cgtaaatatt ggagttgcac ccaacaccat cctccgcctt gcggcgagcc ggtcgcttgc
     1921 tcgcgccacc atggatgatg agaacgcgtc ctattcggtg tcgtcgtgcg gtacgacgaa
     1981 caacgtcccg accggctgta cgaccgtgcc gccgatcaac ggaaaattgg ccgtgctgca
     2041 gggccagggt ggcaatccct atctacggcc ctacctctcg accaatgcgg acgtctcgct
     2101 cgagaagtac ttcatgcacg atcgtggcaa aattgccgtg gccgcctatt acaagcggat
     2161 cacgaatttc acgacgcaga atctcaacct caactccggc aacatcaaca gcaatggtcc
     2221 acaggacacg tcggcgttta ccgctgattg ttccgctttc tccgggttgt tgaatggtgc
     2281 gacactcgcg gcgaaccaga cctattcatg ctggtcgacg gcgccgacaa acgacggcaa
     2341 aggttgggtg ttcggctatg aggcaagcgg gactatcccg ctgaacgtgc tgactcccgt
     2401 actcgatggc tttggaatca ttggtcagta cgctcacacc gcgagcaaga tcaaattcag
     2461 caacggatct gcgatcacgc tgccgggctt gtcgaggagc gtctatcagg cgcagatctt
     2521 cttcgaaaag tggggtttca acgcccgcgc ctcgcttact caccgagcac cgttcctcgg
     2581 cgactacacg cttttcaacg cacaggtgac ggccaatttg accaaggcgc agacgacgct
     2641 cgacgcgcag atcggctatg acttcaagtc ggggccgtta aacggcttgt cgatctacgt
     2701 gcagggacac aacctcacga atccagtcct gacctcgtac gtcaatgcag acccgaaaga
     2761 ggtgaacatc cgcgaccaat ttggtgcgac ctacctcgcc ggcgcgacgt tccggttctg
     2821 attggtctga cgcaagtgat ggcggcgcgt tcgaagggac gcgccgccat ttccttttgg
     2881 agtgatgtga ctaggctgac ccggtgagtg acggaccttt ccgcatcctg gttgtcggtg
     2941 gtggcacggc tgggtggctc gcggccgcgg tttgcgcgcg cttccttccc gcgcggctgt
     3001 actcgatcgc gctgattgaa tcggacgaaa ttggaaccgt cggggtaggc gaatcgacca
     3061 tcccgcaatt gcaattggtc aatgccgctc tcggcattga cgaagacgaa ttcatgcgcg
     3121 cgacgcacgc aacctataag ctcggcatcg agtttgccgg ctggggaagc gcggaagatc
     3181 gctatattca cgcgttcggc gattgcggtc gccccgtcgg ccagacgccc ttccatcatt
     3241 tctggctgcg cggtttgcgc cttggcgaga cggcgccgct cgatgcttat tgcctcaatg
     3301 ccacggccgc ttacgctggc aggttcgaac gcgctgaccg cgcgcagtcg aagatgatgg
     3361 gcgggctcgt ccacgcgttt cagttcgatg ccgggctcta cggacagttc ctgcggcgct
     3421 atgccgaagc gcgcggcgtt cagcgcgtcg agggacgcat cacgcatgcg gaactggacc
     3481 ctgaaaccgg ggacgtcgac aatgtggtgc ttgatgatgg ccgcaagtac ggcgcagacc
     3541 ttttcctcga ctgctcaggt tttcgcggtc tgctgatcga ggaagcactc cacaccggct
     3601 atgagagctg gacgaacttg ctaccctgcg accgagcgct cgtggtacag agcgaagccc
     3661 tcgccaagat aacgccgtac acgcgcgcga gcgccaaacg agcaggctgg caatggcgca
     3721 ttccgctgca ggaccgcgtc ggaaatggcc atgtctattg ctcggcggtc atgggtgatg
     3781 acgaggccgc ttccgtccta ttgcatgatc tgaacgggag cgcgctttcc gatccgcgga
     3841 tcctccactt cgcgacgggg cggcgcaagg cgttctggaa ccgcaacgtc gtcgcgcttg
     3901 gtttggcagc aggattcctc gagccccttg aatccaccag cattcatctc gtgcaatcgg
     3961 cgatcgagcg cgttctgaag tttcttccca atggtcgcgt gaagggggcc gatgtcgaat
     4021 catacaatgc gcagacggtg ttcgaatggg agcgagttcg tgacttcatc gcgttgcatt
     4081 atcacgcgaa tagtcgcccc gaacctttct ggcgcaattg tgcggcaatg gcgatccccg
     4141 acagcctctc ggagaagctt gcgctatttc gcgctaatgg acggatcacg cgcttcaacg
     4201 aggagctgtt tgcggaagtc ggctggctgc aggtgatgat cggccaagga attaagcctg
     4261 aaggctatca cccattggcg aacgcgccga gcgacaccga gctacgcgaa tttctctcgc
     4321 tgctccgcca gacggtggca aagcatgttg ccggtttgat gacgcatgat gcttggctcc
     4381 ggcagcactg ctgggcgagc taaggcttcc ccatcagaaa tgtgttgacg gtcagccgtg
     4441 cccgtcgcgg gtcgggcgag aagtcgaggt ccggcggcag gtcggcgcaa tgcaacaggt
     4501 ggccacgata gaccagagcg cggttcggcc gggcctcgaa gcgtgcggtc tgctcgaaga
     4561 tcggcgtact gccgctgata taggctggcg caggaagccc atggcgcgcc acatcgcgac
     4621 gcagcgcagc atcatagtcg gcgtggcgat cggccgtaat cgcctcaaag cccgtgcccc
     4681 ggtgccggta aaaggcggtg ccgccgcgct cggcgccgtc gagataatga agtagcgcga
     4741 tacgttcggc ttcgaacccg tcaaagtggg gcagtcgttg aatcggggtt agttcgcgcg
     4801 ggcgcgtcgt cacgatcgag tagcccgccg agatgacggc cgcggcctca caaaagccga
     4861 agacatccgc gatcagcatt tgcaccggct cgaggtatgc atcgacgtcg cccacttcga
     4921 cctccgcgcg caatccggga tagtgacgtc ccatcggtct atagtcgaga acttcggcct
     4981 tcgcgcgcaa agctcctgga tcgggaacga aatcgtcgat cacgagcacc ggctgccgct
     5041 cttgaccgat atggacaacg cggaccgacg gcatggttca gaccaactca gctgcgcgac
     5101 aatggcgcgc aatgaactcg tcgtgcgttg gaaaggtctt cgcggccgcg cgcatcagcc
     5161 cgcgcagctt gcgcagctcc ctaggcgcgt cgacctgcgg ccttaagtcg gcaagcggat
     5221 catagccgcg cgggataagg ccctgcccca gataaactgc gagccagctc gcgttgcgaa
     5281 acagctcgtc gtcgggcgag acgaggcggg catgggccgc gaaatgcttg atcttgtagg
     5341 cgagctcgtc cgggatcgtc atggcggcgc actggcgcca gaacggctca ggacgattgt
     5401 tagcgtaata gtgcagtatg aggaaatcgc ggatgcgttc ccattcgttc acggttgcgc
     5461 ggttaaactc ctcggcattg agcgggtcgt gattgcgatc tggcaacagc cgcagcaatc
     5521 gttcgattcc catctggacg aggtggaggc ttg
//
LOCUS       DASRBJ010000058         8511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_719007,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000058 DASRBJ010000000
VERSION     DASRBJ010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8511
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_719007"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..605)
                     /locus_tag="VE968_01715"
     CDS             complement(<1..605)
                     /locus_tag="VE968_01715"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HZU50571.1"
                     /translation="MRKSVLLLFAAALAMSPAIGEELHYLNPSDVAEAQRENAALVEE
                     LGGAETGPRSAYVAAVGHRVGAYSGIANPGQALHFTTLDSAVANAFSVPGGYVYVTRQ
                     LMALMNDESQLAFALGHEVGHIAANHAHIREEYAERNSLGVFGQIVGAIFGPGAAGLL
                     QARSVLDLLSFSREQEYEADTLGIRYMIAAGYDPQGAVAVLA"
     gene            complement(679..1620)
                     /locus_tag="VE968_01720"
     CDS             complement(679..1620)
                     /locus_tag="VE968_01720"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HZU50572.1"
                     /translation="MKTYLDFEKPIAELETRVAELRETASSSDIDLDAEVGRLEAKAN
                     KLLRDTYAKLSPWQKAQVARHPDRPHFKDYVAGIADDFLPLAGDRSFGDDPAIIGGLA
                     RIDGRRVMLMGHEKGDDTVTRLKHNFGMAKPEGYRKAIRLMKLADQFGIPVVSLVDTS
                     GAFPGVQAEERGQAEAIARSTEQCLALGVPMIAAIVGEGGSGGAIAIAAANRVLMFEN
                     AVYSVISPEGCASILWRTADKAPEAAEAMKITAADLHALGVVDRIVNEPLGGAQRDPD
                     AAIGALKGALIEELDGCSQLGPDELRAQRRAKFLAIG"
     gene            complement(1656..2540)
                     /locus_tag="VE968_01725"
     CDS             complement(1656..2540)
                     /locus_tag="VE968_01725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase"
                     /protein_id="HZU50573.1"
                     /translation="MTPDDRALVDRFLDMMAAEAGSSRNTLAAYRSDLERAGESIASL
                     AAASSDDLSRLGATWAELAPSTIARRSAALRRFFGFLVDDGLRQDDPSEALPRPRLER
                     PLPRILDSSEVARMFEAAEDRAASGEFIAVRNLALLELLYGSGLRASELVSLPRAAVR
                     QGQPFLMVRGKGSKERLVPISSRAEEAVRRWLDISPGGKPWLFPSGKAHLSRVRLFQI
                     IRMMAADAGIPPERVSPHVLRHAFATHLLSGGADLRVLQSLLGHADIATTQIYTHVDS
                     ARLVELVNAKHPLATRSR"
     gene            complement(2537..4294)
                     /locus_tag="VE968_01730"
     CDS             complement(2537..4294)
                     /locus_tag="VE968_01730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50574.1"
                     /translation="MRTKLILIASSAILLGLPAIAQQVAPAQAPAPQPAPAATTPPTS
                     ATPPSNEDLSSSDEGTDESAVEEVAKPSLEPPAPPVEYPGWARRDPWSAGSINPSDVG
                     LTSDAWGEASGVFLSTLLRRMQTPIASRWAHIALRDALLAKVRAPLNVNPVDWAAERA
                     WLLLRLGEADAARMLVANVDTDRFTPKMVQVAVQTALANADPPALCPLEDGIKQFDPA
                     VLRLVQAMCASLAGQSEQASAMIDQARRYGRIGGVDLALTEKVVGAGANGRASTIEWD
                     PVDSLTAWRFGLAAGTGAVAPDRLINASPVQLRAFEARAPLLSPQQRLPSALVAAGLG
                     VFSSQTLVDLYSALYDTTDPTDLPNSDAWQLRQAFVAKDADTRLAAIRKLLGTGKGTL
                     EKEASRALVARAATLVIPDAKLAKDAPELISAMLAAGYDEAASRWIPVIGRMDDEDND
                     RCWGMLALAAPNVADVGTSRINSFIKRDNSPDHQRSALLVAGLAGLGRITTDTANALN
                     QRYGLGLGHVTSWTRMVDAAAARGQAGTVLVLTGTGLQTPSFEHVPAAHIFHSVAALS
                     RTGQGFTARMIAAEALSRT"
     gene            complement(4284..4415)
                     /locus_tag="VE968_01735"
     CDS             complement(4284..4415)
                     /locus_tag="VE968_01735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50575.1"
                     /translation="MRLIVLIIILVIVVGGLVFLSTLPKEQPTHQIEVAVPQGGNAH"
     gene            4465..5004
                     /locus_tag="VE968_01740"
     CDS             4465..5004
                     /locus_tag="VE968_01740"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HZU50576.1"
                     /translation="MELGKRLDRPVVLVGLMGVGKSTVGRRLAKRLGVSFVDSDEEIE
                     DAAGYPPAEIFERYGEQDFRDGERRLVARLVEGDVRVIATGGGAYVDPNTRKLLNERA
                     ITVWLDAPVDVLAERTSRRNTRAQLRQGDPKAVLERLAEERRPSYSEAHIHVKSGDGA
                     HRDVVETIVRALERFVPDV"
     gene            complement(5001..6740)
                     /locus_tag="VE968_01745"
     CDS             complement(5001..6740)
                     /locus_tag="VE968_01745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011950856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HZU50577.1"
                     /translation="MLGAALIFVTLFRRLKLGATLGYIVAGALIGPKLLGLIQDPQQL
                     TSVTDIGIALLLFIVGLELQPRRLWHLRRDIFGLGLLQVVLCGGAISALLYVALGISP
                     EAAVAIGLPLGLSSTAQVLPMLRSDNELNTPQGERAFSILLFQDLSIVPMITIVAAMA
                     RTPPDPTAPVGWRLALYTVLAVGALVVIGRLVLSPLFRLVGRLGERELFVVAGLFTVI
                     ASAAVMHHLHLSVPLGAFIAGVMLAESPYRHELESDVEPFRSILLGLFFLSVGMLLDL
                     KLIAARPLFVIGIAASVILTKTILISFISRLVSCSWAQSIRLGLLLSQAGEFGFVLFA
                     QATAAELIAPQAASLFGAVVTLSMASTPFLMRFVDWLERREVKRDDLDGPELSPETSA
                     IVVGYGRFGQTVAQMMMAKGIGVTLIDKKPAQIELSSEFGTKVYYGDGVRLDLLRSAG
                     ADTARVIAFCNDNSEGELSADRIDAVLKAFPHASVMVRAYDRVHLIALDRLDLAFAER
                     ELFESAVAMGRAALRASGIDGIEIDRVEREYRSRDCERLERQVETGDIKAGWERAFAP
                     DRTLPDEEVRSPA"
     gene            complement(6800..7222)
                     /locus_tag="VE968_01750"
     CDS             complement(6800..7222)
                     /locus_tag="VE968_01750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein"
                     /protein_id="HZU50578.1"
                     /translation="MNAPLYTIEVLRLAASLCGPRTLDREDGAADVRSPTCGSRIRAA
                     VQLDADGRVEALSMDVHACAFGQASAALVEQHGRGLARPEVAAATLAMSRWLEDETED
                     PVPWTGIEALNAARNRKSRHGAILLPFRALLAAIESAS"
     gene            complement(7219..>8511)
                     /gene="cysS"
                     /locus_tag="VE968_01755"
     CDS             complement(7219..>8511)
                     /gene="cysS"
                     /locus_tag="VE968_01755"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008601953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HZU50579.1"
                     /translation="ITMYVCGPTVYGRAHIGNARPAVVFDTLARLIRHEFGSSSLVYA
                     RNVTDVDDKIIATAQSEGVEPAVITERYERYYLADMGALGVQPPTIAPHATQELRAMI
                     ALIEQLIAKGHAYLAQGHVLFSVPSDPEYGMLSKRDRDALVAGARVEVAPYKRDPADF
                     VLWKPSDEGVIGWGSPWGRGRPGWHIECSAMIEAHLGQTIDIHGGGLDLIFPHHENEI
                     AQSRCAHDGMPLARYWVHNGFVDMGAEKMSKSLGNIVTPSQLLAEGHRGETLRLALLS
                     AHYRQPLPWTNGLLAQAKATLDRLYRSAGDAEPGEMDEGVLEALRDDLNTPLALARLS
                     ALDGGRLRASARLLGLLDERAEDWAKGRVASSNAHRSEFSQSTDADSEAIIESRIAER
                     AAAKKNRDFATADRIRHELKSQGIVLEDGPAGTKWRRE"
BASE COUNT         1719 a         2596 c         2618 g         1578 t
ORIGIN      
        1 gcgagcactg caacggcacc ttgagggtcg tagcctgcag caatcatata gcggatgcca
       61 agcgtgtcgg cctcgtactc ctgctcgcgt gagaagctca ggaggtcgag gacggagcgc
      121 gcctgaagca acccggcagc tcctggccca aatattgcgc cgacgatctg cccgaacacg
      181 cccaagctgt tgcgctcggc atattcctcg cgaatgtgtg catggttggc ggcaatgtgg
      241 ccgacctcgt ggccaagcgc gaacgcgagc tgagactcgt cgttcataag cgccatcagc
      301 tgacgcgtta cgtaaacata gccacctgga accgagaatg catttgcaac ggcagagtcg
      361 agcgtcgtga aatgaagtgc ttgccccggg ttcgcgatac ccgagtaagc tccgacgcga
      421 tgcccgacgg cagcgacata agcgcttctc ggaccagtct ccgcgccgcc cagttcctcc
      481 acaagcgcag cattctcccg ctgcgcctcg gcgacatcgc ttggattgag ataatggagc
      541 tcttctccga tcgctgggct catcgccagc gcggctgcaa atagtaacag gacgctctta
      601 cgcatgaggc ttatctcccg ttcgggcggg aaataagaag ggaatttgaa cgggaaatga
      661 ccggccgggc gcggtgcttc agccgattgc gaggaacttc gctcgacgct gggcacgaag
      721 ctcgtccggg ccaagctggc tgcagccatc cagttcctcg atcaatgcac ctttaagggc
      781 tccgatggcg gcatcaggat cgcgctgcgc accgccgagc ggctcgttca caatgcgatc
      841 cacgacgccg agcgcatgaa ggtcagccgc ggtaatcttc attgcttcag ccgcctcggg
      901 cgccttgtcg gccgttcgcc agaggatcga cgcacatcct tcgggcgaaa tgacggagta
      961 gacggcgttc tcgaacatca gcactctgtt tgccgcggcg atggcaattg ctccgccaga
     1021 accgccttcg ccgacaatcg cagcaatcat cggtaccccg agcgcgagac attgttcggt
     1081 cgaccgtgca attgcttctg cctgaccgcg ttcctcagcc tgcactcccg ggaacgcacc
     1141 ggacgtgtcc acgaggctga caacgggaat cccgaactgg tcggcgagct tcatcagccg
     1201 aatggcttta cgatacccct cgggctttgc catcccgaaa ttgtgcttga ggcgggtgac
     1261 cgtatcgtct cccttctcgt gccccataag catgacacgc cgaccatcaa ttcgagcgag
     1321 accgccaatg attgccggat catcaccaaa ggatcgatcg cccgcaagcg gcaggaaatc
     1381 atcggctatt ccggcgacat aatccttgaa gtgcggtcga tcaggatgcc gtgcgacctg
     1441 cgccttctgc cacggcgaca atttcgcgta ggtgtcacga agcagcttgt ttgcctttgc
     1501 ttcgagacgg ccaacttcgg catcgagatc gatgtcggaa ctgcttgccg tctcgcggag
     1561 ctcagcgacg cgcgtctcaa gctcggcaat cggcttctcg aagtcgagat aggttttcat
     1621 tcaatcgcgc gcctaggcgg aagcaaccgt caaggtcaac gagaacgcgt tgcgagcgga
     1681 tgcttcgcgt tgacgagctc gacgagccgc gcgctgtcaa catgcgtgta gatctgggtc
     1741 gtcgcgatgt ccgcgtggcc gagcagcgac tgcaacacgc gcaagtcggc gccgcccgag
     1801 aggagatgcg ttgcaaaagc gtgtcgcagg acatgggggc tcacgcgctc tggcggaatt
     1861 cccgcgtcgg ctgccatcat ccgaataatc tggaacagcc tcacccggct caagtgagcc
     1921 ttcccacttg gaaatagcca cggctttcct ccaggcgaga tgtcgagcca gcgccttaca
     1981 gcctcctccg ctcgtgatga gatcgggacc agtctctctt ttgatccctt gccacgcacc
     2041 attaggaatg gctgtccctg tcgcaccgca gcgcgcggca agctgacgag ttcacttgct
     2101 cgaaggccag agccgtagag aagttcaaga agtgcaagat ttctgactgc tatgaattcg
     2161 ccgctcgcgg cgcgatcctc ggcagcttcg aacattcgtg cgacttcgct cgagtcgaga
     2221 atgcgcggga gcggtctctc aagtctcggg cgcggaagtg cctccgacgg atcgtcctgg
     2281 cgaagtccat cgtcgacgag gaagccaaag aagcgccgca acgccgccga gcggcgcgca
     2341 atcgtcgacg gcgcgagttc ggcccaggtg gcaccgaggc gcgagaggtc gtcgctcgat
     2401 gccgccgcga ggctggcgat gctctcgcca gcacgctcga gatcgctccg gtaggcggct
     2461 agcgtgtttc gcgatgagcc cgcttcggct gccatcatgt cgaggaaacg atcgaccagc
     2521 gctcggtcgt cgggagtcac gtccgcgaca atgcctcggc agcgatcatc cttgccgtaa
     2581 atccctggcc ggttcgcgac agagcggcaa ccgagtggaa aatgtgggcg gccggaacgt
     2641 gctcgaacga tggcgtctgg agtccggtgc cggtgagaac cagtaccgta ccagcctggc
     2701 cgcgcgcggc tgcagcatcg accatccttg tccagctagt cacatggcca agtccaaggc
     2761 cgtaacgctg attgagcgcg ttggcggtat cggtggtgat tcggccaagg ccagcgagac
     2821 cggcgacaag cagtgcgctg cgctggtgat caggactgtt gtcgcgcttg atgaaagaat
     2881 tgattcggct tgttccgacg tcagcgacgt ttggcgcggc gagggcaagc attccccagc
     2941 agcgatcatt gtcctcgtca tccattcgcc caatgacggg gatccagcgc gaggcggctt
     3001 cgtcataccc agccgcaagc atcgccgata tgagctccgg tgcatccttt gcgagctttg
     3061 cgtccggaat tacgagcgtt gcggctcgag ccaccaacgc acgcgaggct tccttctcga
     3121 gcgttccctt gcctgtcccg aggagcttcc ggatcgcggc gaggcgtgta tcggcgtcct
     3181 tggcaacgaa cgcttgtcgc aattgccagg cgtcgctgtt gggaaggtcg gtcggatcgg
     3241 tcgtatcgta gagagccgaa tagagatcga ccaacgtctg tgacgaaaat acgcccaatc
     3301 ctgccgcgac gagcgccgaa ggaagccgct gctggggcga aagcagcggt gcacgcgctt
     3361 caaatgctcg aagttgcacg ggggaagcat tgatcagccg atccggtgct acggccccag
     3421 ttccggcagc gaggccaaat cgccaggcgg tgagcgaatc gaccggatcc cattcgatcg
     3481 tcgacgctcg gccgttggct cctgcgccga caactttctc ggtcaaggca agatcgacac
     3541 caccgatgcg accatagcgt ctcgcctgat cgatcattgc cgaggcctgc tccgactgtc
     3601 cggcaagcga agcgcacatc gcctggacaa gccggagcac tgccggatcg aattgcttga
     3661 tcccatcctc aagtggacaa agagcgggcg gatcggcgtt tgcaagagcg gtttggaccg
     3721 caacctggac cattttcggt gtgaaccggt ccgtgtcgac attggcgacg agcatgcgtg
     3781 ccgcgtcggc ttcgccaagg cgcagcagca gccaggcacg ctccgccgcc caatcaacgg
     3841 gattgacgtt gagaggcgcg cgcacctttg ccaataatgc atcacgaagc gctatatgcg
     3901 cccatcgtga tgcgatcggc gtctgcatcc gtcgcaacag agttgagagg aacacaccac
     3961 tcgcttctcc ccacgcatca ctcgtgagac caacgtcact tgggttgatt gaccccgcgc
     4021 tccaggggtc acgccgtgcc caccccgggt attcgaccgg gggagctggg ggctcgaggc
     4081 tgggctttgc gacttcttcg accgccgatt cgtcggttcc ttcatccgac gagctcagat
     4141 cctcgttgga tggtggtgtt gcactcgtgg gcggagtggt tgcggcaggc gccggctgcg
     4201 gggctggcgc ctgggcggga gcgacctgct gggcaattgc tggcaagccc agcaaaatgg
     4261 ccgacgaggc aatcaagatg agtttagtgc gcattgcctc cctgcggcac agcaacttcg
     4321 atctggtgcg tcggctgctc tttgggaaga gtcgagagaa acacgaggcc gcccacgacg
     4381 atgacaagaa tgatgatgag gacaatcaat cgcatgtctg tggcttttgc cgagcgggaa
     4441 aggcgctgta tagcccttta agcgatggag ttgggcaagc gtctcgaccg ccccgtagtg
     4501 ctggtcggac tgatgggggt tggaaaatcg acggtcgggc ggcgcctggc caagcgtctc
     4561 ggcgtgtcgt tcgtcgatag cgacgaggaa attgaagacg ctgcgggtta cccgcccgct
     4621 gaaatctttg aacgctatgg cgaacaggat tttcgggacg gcgagcgtcg gctcgttgcc
     4681 cgccttgtcg agggggacgt gcgagtaatc gcgaccggcg gcggagccta tgtggatcca
     4741 aatacgcgca agttgctgaa cgaacgggcg attacggtct ggcttgatgc acccgtcgat
     4801 gtgctcgcag aacggacatc gcggcgcaac actcgagcgc aattgcgtca aggtgatcca
     4861 aaagcggttc tcgagcgact cgcggaggag cgccgaccgt cctattcgga ggcccacatc
     4921 cacgttaaga gcggggatgg agcccacagg gacgtcgtcg agacgatcgt gcgtgctctc
     4981 gaacggttcg tgcccgacgt ctaggcggga cttcttactt cctcgtcggg gagagtgcgg
     5041 tcgggcgcga aggccctttc ccagccagcc ttgatgtctc ccgtctccac ttgccgctcg
     5101 aggcgttcgc aatcgcgcga gcgatactcg cgttcgaccc ggtcaatttc gatgccgtca
     5161 ataccactcg cccgcaaggc cgctcgcccc atcgcgacgg cgctctcgaa caactcgcgc
     5221 tcggcaaaag caagatcaag ccggtcgagt gcgatcaggt gcactcggtc gtaggcgcgt
     5281 accatgaccg aggcatgggg aaacgccttg agaaccgcgt cgattctatc cgcactcagc
     5341 tcgccttcgc tgttatcgtt gcaaaaagcg atgacgcgag ccgtgtcggc gccagcagag
     5401 cgaagcagat cgaggcggac cccgtcaccg taatagacct tcgtaccgaa ctcgctcgaa
     5461 agttcgatct gagcgggctt cttgtcgata agtgtcacgc cgatgccctt ggccatcatc
     5521 atctgcgcaa cggtttgccc aaagcgacca taaccgacga caattgcact ggtctccggc
     5581 gaaagttcgg ggccatcgag atcgtcacgc ttcacctccc gccgctcgag ccagtcgacg
     5641 aagcgcatca agaagggggt acttgccatc gatagagtta cgaccgctcc aaacagcgat
     5701 gctgcttgcg gtgcaatcag ctcagcggcg gtcgcctgtg cgaagagcac gaatccgaat
     5761 tcaccggctt ggcttagcag caagccgaga cggatgcttt gcgcccacga gcagctgacc
     5821 agtcggctga tgaagctgat gagaatggtc ttggtcaaga ttaccgaggc ggcgatgccg
     5881 atgacgaaca agggtctcgc tgcaatgagc ttcagatcga gaagcattcc gacggacaga
     5941 aagaagagtc cgaggaggat cgaacggaag ggttcaacgt cactctcaag ctcatgccga
     6001 tatggcgatt cggcaagcat aactccggcg atgaacgcgc cgagaggcac cgacagatgc
     6061 aaatgatgca tgaccgcggc cgatgcgatg accgtgaaca gccccgccac gacgaacagc
     6121 tctcgttcgc caagcctgcc tacaagccgg aacagcggac tgaggacgag acgcccgata
     6181 acaaccagtg cgcccaccgc aagaacggta taaagcgcca atcgccagcc gacgggcgct
     6241 gtcggatcag gcggcgttcg ggccatggcg gcgacaatcg tgatcatcgg aacgatcgac
     6301 aggtcctgga acagcaggat cgagaatgcg cgctcacctt gcggagtgtt gagctcgttg
     6361 tccgagcgta gcatgggaag cacctgagcc gttgatgaga gcccgagggg aagcccgatc
     6421 gcaaccgcgg cttccggcga aatcccgagt gcaacataga gcaaggcgct gattgcgccg
     6481 ccgcagagca cgacttgcag caagccgagg ccgaatatgt cgcgtcgcag gtgccacaag
     6541 cgtcgcggct gaagctcgag accaacaatg aacagcagaa gcgcgatccc gatgtccgtc
     6601 acgctggtga gctgctgcgg gtcctggatc aggccgagga gcttcggacc gatcagcgcg
     6661 ccagcaacga tataaccgag cgttgctcca agcttcaaac gacggaacaa ggtgacgaag
     6721 atgagagcgg cgccaagcat gatcgcgccg ctctcaagga ttgccgttgt tgcctgtgcc
     6781 gtttgcgcag cggttgtcgt cacgaggcag actcgatcgc cgcaagaagc gcgcggaacg
     6841 gcaaaaggat agcgccgtgc cgcgacttgc ggttacgcgc ggcgttcaac gcttcgatgc
     6901 cggtccacgg caccggatct tcggtttcgt cctcgagcca ccggctcatc gccagcgttg
     6961 cggctgcaac ctccggccgc gcgaggccac ggccgtgctg ttcgaccagt gccgctgaag
     7021 cctggccgaa agcgcaggcg tgaacgtcca tcgaaagagc ttccactcgt ccgtcggcgt
     7081 cgagctgtac cgcggcacga atgcggctgc cacaagtggg cgagcgaacg tcggcggccc
     7141 cgtcttcacg gtcgagcgta cgtgggccac acagtgacgc agcgagccgc aagacctcga
     7201 tcgtgtagag cggagcattc attctcgacg ccatttagta ccggctggcc catcctccaa
     7261 aacgatcccc tggctcttaa gctcatggcg aatgcgatcc gcggtcgcga aatccctatt
     7321 cttcttcgct gctgctcgct cagcgatccg gctttcaatg atggcctccg agtcagcgtc
     7381 cgtgctttgc gagaactcgg atctatgcgc gttcgagctt gcgacgcgtc ccttggccca
     7441 atcctcagca cgctcgtcga gaagacccag caacctcgca gaagcgcgca accttccccc
     7501 gtcaagagcc gataatcttg ccaatgcgag cggcgtgtta aggtcgtcgc gaagcgcttc
     7561 gagcactcct tcgtccatct cgccgggctc agcgtcgcca gcacttcgat acaggcggtc
     7621 gagtgtcgcc tttgcttgcg cgagaagacc gttcgtccag ggaagcggct ggcgatagtg
     7681 agcgctcaac agcgcgagcc gaagcgtttc gccgcggtgt ccctcggcaa ggagctgcga
     7741 aggcgtgacg atgttgccaa ggctcttcga catcttctcg gcacccatgt cgacgaaacc
     7801 attgtgcacc cagtagcgag cgagcggcat gccatcgtgc gcgcaccgac tttgcgcgat
     7861 ttcgttctca tggtgtggaa agatgaggtc gagcccccca ccgtggatat cgatcgtctg
     7921 tccgagatgt gcctcgatca tcgcggaaca ctcgatgtgc caaccgggcc gtccgcgtcc
     7981 ccacggagac ccccagccga tcactccttc atcgctgggc ttccaaagaa cgaaatctgc
     8041 cgggtcgcgc ttataaggtg ctacctcgac ccgtgctccg gcgaccagcg cgtcgcgatc
     8101 gcgcttgcta agcatgccgt actcgggatc gcttgggact gagaaaagaa cgtggccttg
     8161 agcaagatag gcatgtccct tggcgataag ctgctcaatg agcgcgatca tcgcccgcaa
     8221 ttcttgcgtt gcatggggag cgatcgtggg tggttggacg ccaagagcgc ccatgtcggc
     8281 gagataatat cgctcatagc gctcggtgat gaccgccggt tcaactccct ccgattgcgc
     8341 agtggcaatg atcttgtcgt cgacgtcggt aacgttccga gcataaacga gactggaaga
     8401 cccgaattcg tgccggatga gccgggcgag cgtgtcgaac acgacggctg gacgtgcatt
     8461 cccgatgtgc gcccgaccat agacggtcgg gccgcacaca tacatcgtta t
//
LOCUS       DASRBJ010000059         2028 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_462125,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000059 DASRBJ010000000
VERSION     DASRBJ010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_462125"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..306)
                     /locus_tag="VE968_01760"
     CDS             complement(<1..306)
                     /locus_tag="VE968_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation protein"
                     /protein_id="HZU50580.1"
                     /translation="MSPKHLVAAIALALVSAPISAQSVKAGITAWQKADYSAAVAIWR
                     PLAEHGDADAAFNLGQAYRLGRGVPLDLAMAENWFEKAANAGHLDAETTLGLLLFQNG
                     "
     gene            441..1163
                     /locus_tag="VE968_01765"
     CDS             441..1163
                     /locus_tag="VE968_01765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017182493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HZU50581.1"
                     /translation="MRVLALASQKGGSGKTTLSGHLAVQAQLSGAGPVCLIDIDPQGS
                     LADWWNEREADMPAFAQTTVARLASDLEVLRQQGFRLAVIDTPPAITMAIQSVIAVAE
                     LIVIPTRPSPHDLRAVGATVDLCDRAGKPLIFVVNAATPKAKITYEAAVALSQHGTVA
                     PVTLHHRTDFAASMIDGRTVMEIDPQGRSAKEVSELWEYISDRLEKNFRRTVFAAPGA
                     APGIAAAAPRPVGGFGRRVVGQ"
     gene            1183..1806
                     /locus_tag="VE968_01770"
     CDS             1183..1806
                     /locus_tag="VE968_01770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50582.1"
                     /translation="MEAKPFASLSSGLLARKGAARPAMRPQGFGQVGAGLEDLGWNDM
                     GFEPPKPVAVGDGQEESGEAVIHPRVHPTGLTPVQSPVHDQQAELAERLNGSDEAFLE
                     EEIDETAELCDEASIETLPVEKVVVRSADVPPPAARRVRRPRAAPGSKGKAAFTLRLD
                     PDRHLKLRLACAVDGRSAQQLVTDALDQLLERMPEVDGLAAKAKRRG"
     gene            1811..>2028
                     /locus_tag="VE968_01775"
     CDS             1811..>2028
                     /locus_tag="VE968_01775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50583.1"
                     /translation="MNQPLRMSSATSLIVLGSMIAGCAAQHTRSAAASYVGDKPVELG
                     FATRALAALNSNNVPLAIDLAEKAVAKSP"
BASE COUNT          398 a          617 c          617 g          396 t
ORIGIN      
        1 gccgttctgg aagagcagga gcccaagcgt ggtttcagcg tcgaggtggc cagcgttggc
       61 ggccttctcg aaccagttct cggccatggc gagatcgagc ggaactccac gtccgagccg
      121 ataagcttgg ccaagattga acgcggcgtc tgcgtcgcca tgctcggcaa gcggccgcca
      181 aatggccacc gccgctgaat agtcggcttt ttgccaggca gtaattccag ccttcacact
      241 ttgtgctgaa attggagcac tgacgagcgc taatgcaatg gcggcaacta agtgtttggg
      301 actcatcggt taacttcccc tactgctcat tagccgacac aaggaaaacc gcaacagcgt
      361 cttggaaacg ttaaccagat tttagagcat ctagtgtcac tccgctcctc gaattgacgt
      421 cttcacgcga ggggaaaagc atgcgcgtcc tggcattggc atcgcagaag ggtgggtcgg
      481 gtaagacaac cttgtccggt cacctagcgg tgcaggcaca gctttccggg gccggccccg
      541 tctgcctgat cgacatcgat ccgcagggaa gtcttgccga ttggtggaac gagcgcgaag
      601 ccgacatgcc cgcgttcgcg caaacgaccg ttgcgcgcct cgcttccgat cttgaagtgc
      661 ttcggcagca aggttttcgc cttgctgtta tcgacacgcc tcccgccatc accatggcca
      721 ttcagagcgt tattgcggtc gccgaactga tcgttattcc gacccggccg agtccgcatg
      781 acctgcgcgc cgtcggcgcg acggtcgacc tttgcgatcg ggcgggcaag ccactcatct
      841 ttgtcgtcaa cgcagccacg ccgaaagcca agatcaccta cgaggcggcc gttgcactct
      901 cgcagcatgg aacggttgcg ccggttacgc tgcatcatcg aaccgacttc gcggcatcga
      961 tgatcgacgg tcgtaccgtc atggaaattg atccccaggg tcgctcggca aaggaagtca
     1021 gcgaactttg ggaatatatc tcggatcggc tcgagaagaa tttccgccga accgtttttg
     1081 cagcgcccgg cgctgccccg ggaatagctg ccgccgcgcc gcgtccggtc ggcggcttcg
     1141 gtcgccgcgt cgttggtcag taaggaaggc gtaaacgtgg ccatggaagc caagcccttt
     1201 gcctctcttt cttcgggact tctcgcgcgc aaaggcgctg cgcgtcccgc gatgcgtccc
     1261 cagggattcg gtcaggttgg tgcgggtctt gaggaccttg gatggaatga catgggcttc
     1321 gagccgccca agccagtggc ggttggcgac ggacaggaag agtcgggcga agccgttatt
     1381 catccgcgtg ttcatccaac ggggcttacc cctgtccagt ctccagtcca cgaccagcag
     1441 gctgagctcg cggaacgcct gaacggttct gatgaagcgt ttttggagga ggagatcgac
     1501 gaaaccgccg agctgtgtga cgaggcgtcg atcgaaactc taccagttga aaaggtcgtg
     1561 gtccggtccg cggatgtgcc tccaccagcg gcgcgccgcg tcaggcggcc ccgcgctgct
     1621 ccaggaagca aaggcaaagc ggcatttacg ctgcgcctcg atccggaccg ccatttgaag
     1681 ctccggctcg cttgcgccgt cgacggaagg tcggcgcagc agctggtgac cgacgcgctc
     1741 gaccagttgc tcgagcgcat gcccgaagtc gacgggctag ccgcaaaggc aaaacgtagg
     1801 gggtaacttc atgaatcagc cgctccgcat gagttccgca acgtcgctca tcgtcctcgg
     1861 ttcgatgatt gccggatgcg cggcacaaca cacacgttca gcggcggcat cctatgtcgg
     1921 cgacaagccc gtcgaactgg gatttgcaac gcgagcactc gccgcgctca attcgaacaa
     1981 tgtaccgctt gcaatcgacc ttgccgaaaa ggcggttgcg aagtcgcc
//
LOCUS       DASRBJ010000060         2746 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_213041,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000060 DASRBJ010000000
VERSION     DASRBJ010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2746
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213041"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..869)
                     /locus_tag="VE968_01780"
     CDS             complement(<1..869)
                     /locus_tag="VE968_01780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU50584.1"
                     /translation="MATDPNQNSYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHM
                     VFEVSDNAIDEALAGHCDRVLITLNPDGSVSVEDNGRGIPTGIHPEEGVSAAEVIMTQ
                     LHAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSEWLDLTIWRDGQEHYMRFRHGDAE
                     APLKVVGTTTKRGTRVTFMPSSETFKQTEFDFERLEHRFRELAFLNSGVRLVLSDARH
                     DEAKTVEMFYEGGIGAFVKWLDRAKTPLMPDPIAITGQRDDIGIDVALEWNDSYYENV
                     LCFTNNIPQRDGGT"
     gene            complement(940..2307)
                     /locus_tag="VE968_01785"
     CDS             complement(940..2307)
                     /locus_tag="VE968_01785"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HZU50585.1"
                     /translation="MSFNSLGLSKPVLDALAAKEYSEATPIQREAIPTLLTGRDLLGI
                     AQTGTGKTAAFMLPSLDRLAHARRPLHPGKVRMLVLAPTRELAAQIATSAQAYGKFMR
                     LSVGAIFGGVPNHKSVRVVAGGLDVLVATPGRLLDLVDQRAISLRELEILVLDEADQM
                     LDLGFIHALRRIVTLVPKERQTLFFSATMPRAIKELADKYLTNAVEISVTPAATTVER
                     IEQSVTMVNQSEKAALLAFYVSSEAAQRVLVFSRTKHGADKIVRQLEAAGISSSAIHG
                     NKSQAQRERAIADFRSGDVGVLVATDIAARGIDISGVSHVVNFDLPDVPEQYVHRIGR
                     TARAGADGVAIAFCSPDERGNLRDIERTTRQRLRVHALPEDFAAAAEAFKRLKPIVKS
                     APARPATKADRRDNGHRRQNRNANQQRHPQRAEAHVAHRPDGAQQKRKFRSRDRFAPS
                     RRARG"
     gene            complement(2514..>2746)
                     /locus_tag="VE968_01790"
     CDS             complement(2514..>2746)
                     /locus_tag="VE968_01790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017499164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA replication and repair protein RecF"
                     /protein_id="HZU50586.1"
                     /translation="GLILAHAELVAEHRDEPPILLLDEVAAHLDPVRRGALFERLEDR
                     GQVWMTATEEGLFQGMGDACRYHVEAGSIARV"
BASE COUNT          554 a          823 c          814 g          555 t
ORIGIN      
        1 gtgccgccat cccgctgcgg gatgttgttc gtgaagcaga gtacattttc gtaatagctg
       61 tcgttccact cgagcgcgac atcgatcccg atatcgtcgc gctggccagt gatcgcgatt
      121 gggtccggca tcaatggcgt cttcgcacga tcgagccatt tcacgaacgc cccgattcca
      181 ccctcgtaga acatctcgac cgtcttcgct tcgtcgtgac gagcatcgct gaggacaagc
      241 cgcacgcccg agttgagaaa ggcaagttcg cgaaatcggt gctcaagacg ttcgaagtcg
      301 aactccgtct gcttgaacgt ttccgaagaa ggcatgaacg tgacgcgcgt gcctcgctta
      361 gtcgtcgttc cgacgacctt cagcggtgct tcggcgtcgc catgacgaaa gcgcatgtaa
      421 tgctcttggc catctctcca aatggtaagg tcaagccatt cactcaaagc gttaacgaca
      481 ctgacgccaa ctccgtggag acctccggaa actttgtaag cattgtcgtc agaggtattt
      541 tcaaactttc cgccggcgtg aagctgcgtc atgatgacct ccgccgcgga cacgccttcc
      601 tccgggtgga tgcccgtcgg aatgccgcgc ccgttatctt cgacgctcac ggacccgtca
      661 ggattaagcg taatcagaac cctgtcgcag tggcctgcaa gcgcctcgtc aattgcattg
      721 tcgctgactt caaagaccat gtggtggaga ccagagccat cgtcggtatc accaatgtac
      781 atgccgggcc gcttgcgaac ggcgtcgagg cccttgagga ccttaatgct ttcagcaccg
      841 taggaattct ggttcgggtc agttgccata gtcccgatat agggacttca ccgccgatgt
      901 cacgcgcgcg cacgtgcgcg cgcgagcaac gacaagtcct tacccccgag ctcgccgcga
      961 aggcgcaaac cggtcgcggc tgcggaactt tcgcttctgc tgagcgccgt ctggtcgatg
     1021 cgcaacatgg gcctcggctc gttgaggatg ccgctgctgg ttggcatttc gattctgcct
     1081 gcggtgtcca ttgtcgcgac gatcggcctt ggtcgccggt cgggcaggcg ccgatttgac
     1141 gattggcttg aggcgcttga aagcctcggc tgcggcagca aaatcctcgg gcaaggcatg
     1201 aacacgcaag cgctgccgcg tggtccgctc gatatcgcgc aggtttccac gttcatccgg
     1261 gctgcagaag gcgatcgcga caccgtcggc acccgcgcgg gccgttcgtc caatgcggtg
     1321 cacatattgc tcgggaacgt caggaagatc gaagttgacg acatggctga cgccagaaat
     1381 gtcaattccc ctcgcagcaa tatcggttgc gacaagtact ccaacatcgc cggagcggaa
     1441 atccgcgatc gcccgctcgc gctgcgcctg gcttttgttg ccgtgaattg cgctggacga
     1501 aatcccggca gcctcgagct ggcgaacgat cttgtcggcg ccgtgcttgg tgcggctgaa
     1561 aacaagcacg cgttgcgccg cttcgctgct tacgtaaaat gcaagaagtg cggccttttc
     1621 gctctgattg accatcgtga cgctctgctc aatgcgttca actgtcgtcg ccgcaggagt
     1681 gaccgagatc tcaaccgcgt tcgttagata cttgtcggca agttctttga tcgccctcgg
     1741 catggttgcc gagaagaaca gcgtctgacg ctctttcggc acgagagtca cgatccgcct
     1801 caaggcgtgg atgaagccga gatcaagcat ctgatccgcc tcgtcgagaa caagaatctc
     1861 gagttcacgg agactgattg cacgttgatc gaccaagtcg agcaatcggc cgggggtcgc
     1921 aacgaggaca tcgagtccac cggcgacgac ccgcacgctc ttgtggttgg gcacacctcc
     1981 aaaaatcgcg ccgaccgaca accgcatgaa tttcccgtag gcctgcgcgc tggttgcgat
     2041 ctgagcagca agttccctcg ttggagcgag caccaacatg cggactttac cggggtgaag
     2101 cgggcggcga gcatgggcga gccgatcgag agacggaagc atgaacgcgg ccgttttgcc
     2161 ggtgccggtc tgcgcgatgc cgagcaggtc tctgcctgtc agaagcgtcg ggatcgcctc
     2221 gcgctggatc ggggtcgcct cggaatattc cttagcagcg agtgcatcga gaacgggctt
     2281 tgaaagcccg agcgagttaa atgacattgt agatcttcca caagaaatca ctccccggcg
     2341 cgaaccttgc gccagggtag cgggagaaca agaaccccgc gtgatgtgga gaacttcaga
     2401 tagtgagacg cgggccggtc gccggatgaa tgcgaagacc gatcacgccg cttggataag
     2461 cgcctcgtgc tgcactgcga tataggcctt gcgggcaata tgtccagttc cgctcagaca
     2521 cgagcgatac ttcctgcctc aacatggtag cgacacgcgt cgcccatgcc ctggaacaag
     2581 ccctcttcgg ttgccgtcat ccagacttgg ccgcggtcct cgagccgctc gaacaaggcg
     2641 ccacggcgca ccgggtcgag atgcgcagca acctcgtcaa gcagcaggat tggaggctcg
     2701 tcgcggtgct ccgccacgag ttcggcatgc gcaaggataa ggccta
//
LOCUS       DASRBJ010000061         3476 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_719184,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000061 DASRBJ010000000
VERSION     DASRBJ010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3476)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3476
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_719184"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1248
                     /gene="sufB"
                     /locus_tag="VE968_01795"
     CDS             <1..1248
                     /gene="sufB"
                     /locus_tag="VE968_01795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007404490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HZU50587.1"
                     /translation="LDIPRIDYQEAYYYAAPKQKPRLASLDELDPEIRRTYEKLGIPI
                     EEQKVLAGVEGAPRVAVDAVFDSVSVATTFREELKKAGVIFLSISEAVREHPDLVRKY
                     LGSVVPQRDNYFACLNSAVFSDGTFVYIPEGVRCPMELSTYFRINAENTGQFERTLII
                     ADKSSYVSYLEGCTAPMRDENQLHAAIVEIYAHEDAEVKYSTVQNWYPGDAEGRGGIF
                     NFVTKRALCAGARSKVSWTQVETGSAITWKYPSCILKGDGSVGEFYSVALTNNRQQAD
                     TGTKMIHIGENTRSTIVSKGISAGFSNNTYRGLVRVLPRAENVRNFTQCDSLLLGSNC
                     GAHTVPYIEVRNPTATVEHEATTSKISEDQLFYAMSRGLDQEAAVALIVNGFAREVLK
                     QLPMEFAVEAQKLLGISLEGSVG"
     gene            1395..1787
                     /locus_tag="VE968_01800"
     CDS             1395..1787
                     /locus_tag="VE968_01800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50588.1"
                     /translation="MVLAAASADLDALDQAVTRCDRKVSNPVFSAEAARRAQFLLDAY
                     REQEAIVNDRLALADQRRQLRENTSLKPADVKQSEKQLDLEQSDLDDRQKALNDKRML
                     EGIRQDAMDSMRRFFLNNCPAGGSEKAR"
     gene            1790..2533
                     /gene="sufC"
                     /locus_tag="VE968_01805"
     CDS             1790..2533
                     /gene="sufC"
                     /locus_tag="VE968_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HZU50589.1"
                     /translation="MLDIRDLHASVAGRPILDGLSLTVAPGEIHAIMGPNGAGKSTLG
                     YVLAGRPGYEVTAGEVRFKGQDLLALEPHERAAAGLFLGFQYPVEIPGVSYLQFLRES
                     LNAQRRARGEQDLSGSDFIKLARSEAALLGMDVELLKRPVNVGFSGGEKKRAEMVQMG
                     IMAPAFAILDETDSGLDIDALRSVGDGINRIMRSPERAVLLITHYQRLLDYVEPDHVH
                     VLQGGRIVRSGGADLARTLEREGYAEAAA"
     gene            2533..3270
                     /locus_tag="VE968_01810"
     CDS             2533..3270
                     /locus_tag="VE968_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003047926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufD family Fe-S cluster assembly protein"
                     /protein_id="HZU50590.1"
                     /translation="MTAPFPTRRQEAWRYADLDALQPVWEQLAEPLTLTVAAGGKLEQ
                     CWVPSEEDVQVRRVQLSVGRAATARILVVNSALIYGRIEVQVSLAEDAQFELFATNIG
                     KANSTNEIVTTVTHSGERSRSLQVVRSVLNGQATGSYIGRVEVARGAQQSDAEQSVKS
                     LLLERGASANCKPELEIFADDVRCAHGAAVGELDPLQLFYAQSRGLDPAGARAILLEG
                     FVMGLWDRADDPETIANAARAALRRVV"
     gene            3267..>3476
                     /locus_tag="VE968_01815"
     CDS             3267..>3476
                     /locus_tag="VE968_01815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003047930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HZU50591.1"
                     /translation="MNAPTRINSALDVKEQFPGIEGWHYLDSAATAQKPQRVIDAITN
                     AYARNYATVHRGIYQRSSDMTAAYEA"
BASE COUNT          750 a          984 c         1058 g          684 t
ORIGIN      
        1 ctcgatattc ctcgtatcga ttaccaggaa gcctattact acgcggcgcc gaaacagaag
       61 ccgaggctcg cgtcacttga cgaactcgat cccgagattc ggcgtacgta cgagaagctc
      121 ggaataccta tcgaggagca gaaggtgctt gccggcgtcg aaggcgcgcc gcgtgttgct
      181 gtcgatgcgg tcttcgacag cgtgagcgtt gcgacgacgt ttcgggaaga gctgaagaaa
      241 gctggagtca tctttctcag catttcagaa gcggtgcgcg agcaccccga tctcgttcgg
      301 aagtacctag gatccgtcgt tccccagcgc gataattatt tcgcctgcct aaacagcgcc
      361 gtcttttccg atgggacctt cgtttacatc ccggaaggcg ttcgttgtcc catggagcta
      421 agtacctatt ttcggatcaa tgccgagaat acgggccagt tcgagcgcac gctgatcatt
      481 gccgacaaga gtagctacgt gtcctatctc gaaggctgca cggcaccgat gagggacgaa
      541 aaccagcttc atgcggccat cgtcgagatt tacgcgcatg aggacgcgga ggtgaaatac
      601 tcgacggttc agaactggta ccctggcgat gccgaagggc gcggcgggat tttcaatttc
      661 gtcacaaagc gcgcgctctg tgccggagca cgctcaaaag taagctggac gcaggtcgag
      721 acgggcagcg caattacgtg gaaataccca agctgcatct tgaaagggga tggcagcgta
      781 ggagaatttt actcggttgc gcttacgaac aatcgtcagc aggctgatac cggaacgaag
      841 atgattcaca tcggcgagaa cacgcgctcg acgatagtct cgaagggcat cagtgccggt
      901 ttttcaaaca atacatacag agggctcgtg cgggtgctgc cgcgcgctga gaacgttcga
      961 aatttcacgc agtgcgattc tcttttgctc gggagcaact gcggcgccca cacggtgcct
     1021 tatatcgagg tgaggaaccc gacggcaacg gttgagcatg aagcgacgac gtcgaagata
     1081 agcgaggatc agcttttcta tgcgatgagc cgtgggctcg atcaggaggc ggccgtagcc
     1141 ctcatcgtca acggctttgc acgcgaagta ctaaagcaac ttccgatgga attcgctgtc
     1201 gaggcacaga agctgcttgg aatcagcctc gagggaagcg tcggatgaac gtcgtggttt
     1261 ccgatgctgg atcaagccac ctttcccgct ggcgctttgc ctcgtgtccc gcccccggac
     1321 ccgttgcaac tcaacttggc taacaaaatg atggattttc ttgttgtgat cggaattcgc
     1381 aaatgatccc gctaatggtg cttgcagccg cgtctgccga tctcgacgcg ctcgaccagg
     1441 cggttactcg ttgtgatcga aaagtcagca acccagtttt ctcggccgaa gcggcgcgcc
     1501 gcgcccagtt cctgctcgac gcttaccgcg aacaggaggc gatcgtgaat gaccggctcg
     1561 cgctcgctga tcagcgacga cagttgcggg agaacaccag cctgaaaccc gcagacgtga
     1621 agcaatccga gaagcagctg gacctcgagc aatcggatct ggatgatcgg cagaaggcgc
     1681 tgaatgacaa gcgaatgctc gagggcattc gccaggatgc aatggattcg atgcgtcgct
     1741 tctttcttaa caattgcccg gccggcggat cagaaaaggc gcgatgagca tgctcgacat
     1801 ccgcgatcta cacgcgagcg tcgcaggccg cccaatcctt gacggtttgt cccttacggt
     1861 cgctccaggt gaaatccacg cgatcatggg ccccaatggt gctggcaagt cgacgctcgg
     1921 atatgtcctt gccggccgac ccggttacga ggtcaccgcc ggcgaagtgc ggttcaaggg
     1981 gcaggacctg ctcgcgctgg agccgcatga acgggcggca gcgggcctgt tcctggggtt
     2041 ccagtatccc gtcgagattc caggcgtctc ttatctccag ttcctgcgcg aaagcctcaa
     2101 tgcgcaacgg cgcgcgcgcg gtgagcagga tctgtcgggc agtgatttca tcaagctcgc
     2161 gcgaagcgag gcggcgcttc ttggaatgga cgtcgaactg ctcaagaggc cggtcaatgt
     2221 gggcttctct ggtggtgaaa agaagcgagc cgagatggtg cagatgggta tcatggcacc
     2281 cgcctttgcc atactcgacg agaccgatag tggtctcgac atcgatgcgc tgagatcggt
     2341 cggggatggc atcaatcgga tcatgcggtc gccagagcgc gcagtgctgc tgatcacgca
     2401 ttaccagcga ttgctcgatt atgtggagcc tgatcacgta cacgttctgc aggggggaag
     2461 gatcgtacga agcggcggcg ctgatctcgc ccgaacgctc gagcgcgaag gctatgccga
     2521 ggctgctgcc tgatgaccgc cccctttcct acccgcaggc aagaagcgtg gcgttacgcc
     2581 gaccttgacg ccttgcagcc ggtctgggag caattggccg agcccttgac actgaccgtc
     2641 gcggccggtg gcaagctcga gcaatgctgg gttccttcag aagaggatgt ccaggtccgt
     2701 cgtgtgcagc tgtcggtggg acgagcggca acagcacgca tcttggtggt caacagcgcc
     2761 ctcatctacg gtcggatcga ggttcaagtg agccttgctg aagatgcaca gttcgagctg
     2821 ttcgctacga acatcggcaa ggcaaactcg acgaatgaaa ttgtcaccac cgtcactcat
     2881 tcgggcgaac gcagccgatc gcttcaagtc gtgcgatccg ttctcaacgg acaggcgacc
     2941 ggcagctaca ttggacgtgt cgaggtcgcg cggggtgccc agcagagcga tgccgaacaa
     3001 tcggtcaaat ccctgctgct cgagcgcgga gcaagcgcca actgcaagcc ggaactcgag
     3061 atattcgctg atgacgtaag atgcgcccat ggcgccgccg tcggagaact cgatcctctt
     3121 cagctgttct atgcccaaag cagaggcctc gatccagctg gcgcacgagc cattcttctc
     3181 gaaggcttcg taatgggact ctgggaccgg gcggacgatc cggaaactat tgcgaacgcg
     3241 gcgcgtgctg ccttgaggag agtggtgtga acgcgccgac gcgcatcaac tccgcactcg
     3301 acgtcaagga gcagttccct ggcattgagg gctggcacta tctcgacagc gccgcaaccg
     3361 cacaaaaacc ccagcgggtg atcgatgcga taacgaacgc ctatgcgcgc aactatgcga
     3421 ccgtccaccg cggcatttat cagcgctcgt cggacatgac cgcggcctat gaggca
//
LOCUS       DASRBJ010000062         4789 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_615162,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000062 DASRBJ010000000
VERSION     DASRBJ010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4789
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_615162"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..406)
                     /locus_tag="VE968_01820"
     CDS             complement(<1..406)
                     /locus_tag="VE968_01820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZU50592.1"
                     /translation="MTGLMSGKRGLIMGLANDRSLAWGIARALSSEGAELAFSYQGEA
                     LEKRVRPLAGELGSDLLVDCDVSDMRALDRTFDALNERWSGLDFVVHAIGFSDKNELR
                     GKFVDTSMDNFLMTMNISVYSFVAVAQRARSLM"
     gene            complement(403..1383)
                     /locus_tag="VE968_01825"
     CDS             complement(403..1383)
                     /locus_tag="VE968_01825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HZU50593.1"
                     /translation="MRAAFGTEVEEKLKPRLTAWEVVKRVAIGVYADGFIHAGNLAYL
                     SIVALFPFFIVAAAVAHLLGQSQDAMLTVTNVLRRLPPDVASTLREPIQEVLTVRTGT
                     LLWLGAIVGLWTATSFLETIRDILRRAYGVKYCSPFWEYRLGSMLVIIGAVLLLMLAF
                     AASAALAITHQLIVRFFPFAQGLATTLGVTRLVPAFTLFFTFYVLFYVLTPSRYRRPK
                     CRKWPGALLITVWWLATVEILPIVLGLFGGYTRTYGSLAGVMISLIFFFVVGLGVVIG
                     AELNAALAESGATALKGEVYTGPYTDQLEVEEPQPGEDVEPVLERGGPQL"
     gene            complement(1451..2392)
                     /locus_tag="VE968_01830"
     CDS             complement(1451..2392)
                     /locus_tag="VE968_01830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HZU50594.1"
                     /translation="MALDLYQRLGLKRGASEAEIKKAYRSLAKQLHPDRNKDNPNAAK
                     RFSEVTAAYDLLSDKDKRAQYDRGEIDEEGNPKMPFGGGNYSAGASSSQGQGFENFNF
                     GGAEGADLSDLFEGLFGGGGGRQRGGPFGGFRQRARTPQKGADVAYRLKIPFEDAVSL
                     SPQRITLADGKTIDLKLPQGLEDGTRIRLAGKGEDGPDGRGDAIVTVEIAPHRFFSRE
                     GTNIRLELPITLKEAVLGARVKVPTPEGPVMLTIPKGTTSGKVLRLKGRGFMGKDGKR
                     GDQLVSVEIEIPSDDAELQRFVESWNSGGNPRASLGV"
     gene            2473..3051
                     /gene="pdxH"
                     /locus_tag="VE968_01835"
     CDS             2473..3051
                     /gene="pdxH"
                     /locus_tag="VE968_01835"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HZU50595.1"
                     /translation="MATTPFELFDEWFASAQASEPNDPEAMALATASPDGQPHVRMVL
                     LKGHSPAGFIFYTNEESAKGSEIADNAKAALLFHWKSLRRQVRIEGSIERVASDIADT
                     YFASRARESQLGAWASDQSRPLDSRSTFERRFEEMRLQFDGRDVPRPPHWGGYLVVPG
                     RIEFWKDRPHRLHERRLFIRDDDGWNEGLLYP"
     gene            3048..3983
                     /locus_tag="VE968_01840"
     CDS             3048..3983
                     /locus_tag="VE968_01840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010413218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HZU50596.1"
                     /translation="MTTAKVAAEHSVHSTRAAVASVTLALVLLVAKTWAAYRTGSTAM
                     LGSLADTALDVIASLTTLLGVRIAAMPADHDHRFGHGKAEALVALAQVVLITVSAVGI
                     GWRAIERLINGARTEAMGDGIAVSLLAIVFTFGLLWYQRKVIDRTGSVAIKTDNIHYK
                     SDLFLNMTVAVALVLEQALRLKGADAIIGIGIGLWLLWGGWRASGEAVNQLMDREWPE
                     EERKEFLLAAAQYNELSGLHDLRTRKSGTLRFVQFHVWVPASWTVQEAHDRLDRVEED
                     LQQQFPGTEILIHVDPEGQTDRETLLPQEITEQSQ"
     gene            3980..4762
                     /locus_tag="VE968_01845"
     CDS             3980..4762
                     /locus_tag="VE968_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004209761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HZU50597.1"
                     /translation="MTSLPFFQVDAFADRPLRGNPAAVMPLERWLDDALMQAIASENN
                     LSETAFTVPSERADVDFELRWFTPAAEVELCGHATLAAGHILMTGKQARFATKSGVLV
                     VSRRGDLLELDMRAAKLSEVRETNLCAALNLDDRPIWLADGYNDAAIIEVSDEAEVRS
                     LEPDFAALKKIRRMPVVTARGRDQDVASRVFVPYLGIDEDPVTGSAHAALVPYWTKRL
                     GRDEFTAVQASARGGILNCRQEGERAVLGGQCHTVIVGQFQL"
BASE COUNT          983 a         1447 c         1402 g          957 t
ORIGIN      
        1 ccatcagtga acgcgcgcgc tgcgcgacag caacgaagct gtaaacagag atgttcatcg
       61 tcatgaggaa attatccatc gatgtatcga cgaactttcc gcgaagctca ttcttgtccg
      121 aaaatccgat cgcgtggaca acaaaatcaa gtccgctcca ccgctcgttc aacgcgtcga
      181 acgtgcggtc caatgccctc atgtcggaga catcgcagtc gaccaacagg tcggatccga
      241 gctcgcccgc aagcggccgc accctcttct cgagcgcttc gccctggtag gaaaaggcaa
      301 gctcggcacc ctcgctactg agcgcgcgcg ctattcccca ggcgagcgaa cgatcattgg
      361 caagacccat gatcaagcca cgcttgccac tcatcagtcc ggtcaaagtt gcggtccccc
      421 tctttccagc accggttcca cgtcctcacc gggttgcggc tcctcgacct cgagctggtc
      481 ggtgtacggc ccggtataga cctcgccctt tagcgcggtc gcgccgcttt ctgccagcgc
      541 tgcgttgagc tctgcgccaa taacaacgcc aagaccaacg acgaagaaga agatgagaga
      601 gatcataacg cctgcaagac ttccgtaggt ccgggtgtaa cctccaaaaa gtcccagtac
      661 gatcggaagg atctccacgg tagcgagcca ccacacggta atgagcaatg ctccaggcca
      721 ctttcggcat ttaggccttc ggtaacgcga gggcgtaagg acatagaaaa gaacatagaa
      781 ggtgaagaac agtgtaaacg cggggaccag ccgtgttacc ccgagcgtcg tcgcgagacc
      841 ttgggcaaaa ggaaagaacc ggacgatgag ctgatgcgtg attgcgagcg ccgcgcttgc
      901 cgcaaaggca agcatcagca gcaacacagc gccgatgatg accagcatcg agccaagtcg
      961 gtattcccag aagggcgaac aatacttaac gccataggct cggcgcagaa tatcgcggat
     1021 cgtctcaaga aagctcgttg ccgtccaaag gccaacgatc gcgccgagcc aaagcaacgt
     1081 gccagtgcgc acggtcagca cttcctggat aggttctcgc aaggtcgagg cgacatcggg
     1141 cggcaatcgg cgaaggacgt tcgttaccgt cagcatcgcg tcctggctct ggcccagcag
     1201 atgggcgaca gcagcagcga cgatgaagaa gggaaatagc gcgacgatcg acaaataagc
     1261 gagattgccg gcatggatga acccatcagc gtaaacgcca atggcgacac gtttcacaac
     1321 ttcccaggcg gtgagccttg gcttgagttt ctcctcaacc tcggtgccaa aggcagcccg
     1381 catgcttgca aggcgctttc ggcgagcttc cggtgattgt ggcgaaacct ctctcattta
     1441 accggcagta ctaaacacca aggcttgctc gggggttgcc tccggagttc cagctctcca
     1501 cgaaacgttg caactcggca tcatccgacg gaatctcaat ttcgacgctg acgagctggt
     1561 cgccgcgctt tccatccttg cccatgaatc cgcgaccctt gaggcgcagt acctttccgg
     1621 atgttgttcc cttggggatg gtgagcatta ccggaccctc gggcgtcgga accttgactc
     1681 gcgcgccgag caccgcctcc ttgagtgtga tcggcagttc gagacgtatg ttcgtaccct
     1741 cgcgcgaaaa gaagcggtgc ggcgcgattt ccacggtcac aatggcatcg ccgcggccat
     1801 ccggtccgtc ttcgcctttc cccgcgagcc tgatccgagt tccgtcctcc aggccttggg
     1861 gtaatttgag atcaattgtc ttgccgtccg cgagcgtaat cctctgcggg cttaggctga
     1921 cggcgtcctc gaacgggatt ttcaggcgat atgcgacatc tgctcccttt tgcggcgttc
     1981 gagcccgctg gcgaaaaccc ccgaacggtc cgcctcgctg acgcccgcca cccccaccga
     2041 aaagtccctc gaagagatcg ctgagatcag cgccttcggc gccgccgaaa ttgaagttct
     2101 caaagccctg gccctgcgaa ctgcttgctc ccgccgaata attgccgcct ccaaacggca
     2161 tcttcggatt gccttcttcg tcaatctcgc cgcgatcata ttgggcgcgc ttgtccttgt
     2221 cggaaaggag gtcgtaggcg gcggtcactt ccgaaaaccg cttcgcggca ttcggattgt
     2281 ccttattgcg gtcgggatga agctgtttgg caagactgcg ataggccttc ttgatctccg
     2341 cttcgctcgc gccgcgtttc agccccaagc gctggtagag gtcgagtgcc atgttactcc
     2401 catgccgtat cagtctcctg ctgaccagat gggttgccgt tgccgctgag ccaagcctaa
     2461 ggcgcgcaaa ccatggctac taccccgttt gaactgttcg acgagtggtt cgcgagcgct
     2521 caagcaagcg aaccaaacga ccctgaggcg atggcgcttg caaccgcgag tccagacggg
     2581 cagccgcatg ttcggatggt tctactaaaa gggcattctc cggcgggatt tattttctac
     2641 acgaacgaag aaagtgcgaa gggcagcgaa atcgcggaca acgccaaagc ggctctgctc
     2701 ttccattgga aatcgctgcg gcgccaggtc cggatcgaag ggtcgataga gcgggtcgcg
     2761 agcgacatcg ctgacactta cttcgcctca agggcacgcg agtcacagct cggcgcttgg
     2821 gcatcggatc aatcgcggcc actcgacagt cgctcgacgt tcgagcgccg ctttgaggag
     2881 atgcggctgc agttcgacgg gcgcgatgtt cctcggcctc cacactgggg cggctatctc
     2941 gtcgttccgg ggcggattga attctggaag gatcggccgc atcgtttgca cgagcgccgt
     3001 ctcttcatcc gcgacgatga cggctggaac gaagggctgc tctacccgtg acgacggcaa
     3061 aagtcgcagc cgaacattcg gttcattcca cccgggcagc cgttgcaagt gtgacactcg
     3121 cgctggttct tctcgttgcg aaaacatggg cggcgtaccg gactggttcg acggcgatgc
     3181 tgggttcact cgccgatacg gcgctcgatg taatagcgag cctgacgacg ctacttggcg
     3241 tccgcattgc cgcaatgccc gctgaccacg accaccggtt cggtcacggc aaggcggagg
     3301 cgctcgttgc acttgctcag gtcgtactga tcaccgtttc cgccgtcggg atcggctggc
     3361 gggccattga gcgtttgata aacggcgctc gaacggaggc tatgggcgat ggtatcgccg
     3421 tctccctgct cgcaatcgtc ttcaccttcg gtctgctctg gtaccagcga aaggtgatcg
     3481 atcgcacggg ttcggtggca atcaaaacgg acaacatcca ctataagtcc gatctcttcc
     3541 ttaacatgac ggttgcggtc gcccttgtcc ttgaacaggc gcttcgactt aaaggcgccg
     3601 acgccatcat cggtatcggc attggtcttt ggctgctgtg gggcggttgg cgggcatctg
     3661 gcgaagcagt gaaccagctc atggaccgcg agtggccaga ggaagagcgc aaggagtttc
     3721 tccttgcggc ggcccagtac aacgagctca gcggacttca cgatcttcgt actcgcaaga
     3781 gtggaactct tcgcttcgtt caattccacg tgtgggtgcc cgcgagctgg accgtgcagg
     3841 aggcccatga tcgcctcgat cgcgtcgaag aggatctcca gcaacagttc cccgggaccg
     3901 agattctgat ccacgtcgat cccgagggcc agaccgatcg agaaaccctt cttccccagg
     3961 aaatcacgga gcaatcccag tgacgagctt gccattcttc caggtagacg cgtttgccga
     4021 cagaccgctt cgcggaaatc ccgcagccgt gatgccattg gaacggtggc tcgacgacgc
     4081 gctcatgcaa gcgatcgctt ccgagaataa tctcagcgaa acggcgttca ctgtgccgag
     4141 cgagcgagcc gacgtggatt tcgagctccg ctggttcact cctgccgcgg aggtagaatt
     4201 atgtgggcat gcgacgctcg cggccggcca cattctcatg actggcaagc aagcgcgctt
     4261 tgcaaccaag tcgggagtgc tcgtcgtgtc caggcggggt gatctgctcg agctggacat
     4321 gcgcgccgcg aagcttagcg aagtgcgcga aaccaatctg tgcgccgcat tgaaccttga
     4381 tgatcgaccg atctggcttg cggatggcta caatgatgcc gcgatcatcg aagtgtcgga
     4441 cgaggccgag gttcggtcct tagaacccga tttcgcggcg ctgaagaaga tacgccgaat
     4501 gcccgtggtc accgcacgcg ggcgtgatca ggacgtcgcc agtcgcgttt tcgtgcctta
     4561 tctcggcatc gacgaagacc cggtaactgg ttcagcacat gccgccctcg taccctactg
     4621 gacgaagagg ctggggcgcg acgagttcac cgccgtgcag gctagtgccc gcggcgggat
     4681 tctcaactgt cgccaggagg gagaacgtgc cgtactcggt ggtcagtgcc acacggtaat
     4741 tgtcggtcag ttccagctat gagcctcgtt gcattgctcg cattggctg
//
LOCUS       DASRBJ010000063         3762 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_213575,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000063 DASRBJ010000000
VERSION     DASRBJ010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3762
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213575"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..493)
                     /locus_tag="VE968_01850"
     CDS             complement(<1..493)
                     /locus_tag="VE968_01850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HZU50598.1"
                     /translation="MTPAARLQAAIEVLDDIIASARDSGAPADAIVTRYFKTRRYAGS
                     KDRRAVRELVFAAIRRSAERPPSGRSAILGLAADQPQLKQLFGQPRGPASILPGEHAA
                     SAGSLPRWLHDEVSPLVDNAEWQALLERAPLDLRVNIDRASRDEMLSEFEGAEPTRLS
                     PWGI"
     gene            complement(497..1969)
                     /gene="guaB"
                     /locus_tag="VE968_01855"
     CDS             complement(497..1969)
                     /gene="guaB"
                     /locus_tag="VE968_01855"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008066722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HZU50599.1"
                     /translation="MAQLTEVAEIPLGLTFDDVLLQPLESSVLPSQADTRTQLTREIP
                     LHIPVLSSAMDTVTEADMAIVMAQLGGIGVLHRNLTVDEQAAAVRQVKRFESGMVVNP
                     ITMTPDQTLADALELMKSHRISGIPIVEKSGKLCGILTNRDVRFAENPHQRVSELMTR
                     DNLATVPIGTSETEARRILHQRRIEKLLVVDQDDHCVGLITVKDIEKSVAAPFATKDA
                     EGRLRVAAATTVGDAGFARSEALIEAGCDCIVIDTAHGHNRDVAKAVERVKNRSNSVQ
                     VVAGNVATYDAARALVDAGADAIKVGIGPGSICTTRIVAGVGVPQLTAIMDAARAAAG
                     VPVIADGGIRTSGDMAKALAAGASTVMVGSLLAGTEEAPGETFLYQGRSYKAYRGMGS
                     VGAMARGSADRYFQQDIKDHLKLVPEGIEGQVPFKGPVREIIHQLVGGVKAAMGYTGS
                     TTIAELKQRAQFVRITNAGLSESHVHDVTITREAPNYPTR"
     gene            complement(2013..2843)
                     /locus_tag="VE968_01860"
     CDS             complement(2013..2843)
                     /locus_tag="VE968_01860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HZU50600.1"
                     /translation="MAVAEAKNDRTVDLFAVRSILFLPASNPRAIEKARQAGADFVVL
                     DLEDAVKPDDKSQARNSALDAVASDWPVPVAIRVNGVGTKWHSLDVDAVGRSKADFVV
                     VPRAISAHLVSDLASTVNKPVLAMIETAAGVLASSEIAGAAAGLIAGTNDLRADLRLP
                     LSGPRSAIATSLQLIVLAARAAGIACFDGVFNKLDDADGFLREANEGRELGFDGKSLI
                     HPAQIGPCHAAFAPSTAEIERAREVVGAFHGGAERLGNEMIERMHVEAAKRVLERARS
                     "
     gene            2888..>3762
                     /locus_tag="VE968_01865"
     CDS             2888..>3762
                     /locus_tag="VE968_01865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HZU50601.1"
                     /translation="MLTIFMIAVAALVLIYVMTGVTIVRQGYRYTIEHFGRFVRVAEP
                     GFNYITPFVYRVGRKINMMEQVLEIPGQEIITKDNAMVAVDGVVFFQVLDGAKAAYEV
                     ADLYTAITALSTTNLRTVMGSMDLDETLSKRDEINTRLLGVVDNATEAWGVKITRVEL
                     RDIRPPQDIVNAMTRQMKAEREKRAVILEAEGLRQSAILKAEGEKQSAILSAEGAREA
                     AFREAEARERSAQAKATATKAVSDAIEQGSAQAINYFVAQKYVDAVTEFARSPNAKTI
                     LFPVEATQLIGTLGG"
BASE COUNT          723 a         1182 c         1124 g          733 t
ORIGIN      
        1 gaattcccca cgggctgagt cgcgtcggct cggcaccctc aaactcggaa agcatttcgt
       61 cgcgcgacgc gcgatcgata ttgacgcgca agtcgagtgg agctcgttca agcaaggctt
      121 gccactccgc attgtcgacg agcggtgaca cctcgtcatg aagccaacga ggaagcgatc
      181 ccgctgatgc tgcgtgctcg cccgggagaa tgctcgcggg gccgcgcggt tggccaaaga
      241 gctgtttcag ctgcggctgg tcggcggcaa gaccaagaat ggcagatcgg ccgcttggcg
      301 gccgctccgc cgatcgccga atcgcggcga ataccagctc gcggacggcg cggcggtcct
      361 tcgatcccgc atagcgccgc gtcttgaaat agcgtgtcac gatcgcgtcg gcaggcgccc
      421 cgctgtcacg cgccgacgcg ataatgtcgt cgagaacctc gattgcggcc tgcaggcgcg
      481 ctgcaggagt catgggtcag cgcgtcgggt aattgggcgc ctcgcgggta attgtcacgt
      541 cgtgcacgtg gctctcggag aggcccgcat tcgttattcg gacgaactgc gcgcgctgct
      601 tgagctccgc aatcgttgtc gatccggtgt aacccatcgc tgctttgacg ccgcccacca
      661 gctggtgaat gatctcacga actggccctt tgaacgggac ctgtccctcg attccttccg
      721 gcacgagttt cagatgatcc ttgatatcct gctggaaata gcggtcagcc gagcccctcg
      781 ccattgctcc gaccgagccc attccgcgat acgccttgta gctccggccc tggtacagga
      841 aggtctcgcc tggcgcttcc tcagtccccg caagcagcga tccgaccatc acggtcgatg
      901 cgccagccgc cagcgccttt gccatatcgc cactggtcct gatgccgccg tcggctatga
      961 cgggaacacc cgcggcggcg cgagcggcat ccatgatcgc cgtgagttgc ggaaccccga
     1021 caccagcaac aatccgcgtg gtgcagatgg agcctggccc aatcccgacc ttgatggcgt
     1081 cggcgcccgc atcaacaagc gctcttgccg catcatatgt cgcaacattc ccagcaacca
     1141 cttggaccga attggaacgg ttcttcacgc gctcgacggc cttcgccacg tcgcgattgt
     1201 ggccatgagc ggtgtcaatg acgatacagt cgcatcctgc ctcgatcagc gcttcggacc
     1261 gagcaaatcc cgcatcgcca accgtcgtcg ctgcagcaac tcggaggcgg ccttccgcgt
     1321 ccttcgtggc aaacggcgcc gcaaccgatt tctcgatgtc cttgaccgtg atcaacccga
     1381 cgcaatggtc gtcctggtca accacgagca acttctcgat gcgccgttga tggaggatgc
     1441 gccgcgcctc ggtctcgctg gtgccgatgg gaaccgtcgc gagattgtcc ctcgtcatga
     1501 gttcgctcac ccgctgatgc gggttctcgg caaatcgcac atcgcgattg gtaaggatgc
     1561 cgcaaagctt cccggacttt tcgacgatcg gaatgccact tatccggtgg ctcttcatga
     1621 gctcgagcgc gtcagcgagt gtctggtcag gagtcatcgt gatcggattg accaccattc
     1681 cgctctcgaa cctcttgacc tggcggacgg ctgccgcctg ctcatcgacc gtgagattgc
     1741 ggtggaggac gccaatcccg ccgagctgcg ccatgacaat tgccatgtcg gcttccgtga
     1801 cggtgtccat ggccgacgaa agaaccggaa tgtgaagcgg aatctcgcga gtaagctgcg
     1861 ttcgcgtatc ggcctggctc ggcagaaccg acgattcgag cggctgcaag agaacgtcgt
     1921 cgaacgtcag tccgagcggt atttcagcga cttcggtaag ttgggccata tcggcccatg
     1981 acaggcgaac agcgattcgc caagccttcg gctcagctgc gtgcgcgctc gagcacccgt
     2041 ttcgccgcct cgacgtgcat tcgctcgatc atctcgttcc caagtcgttc cgctccgccg
     2101 tggaatgctc ctaccacctc acgcgcgcgt tctatctcgg cagtgcttgg ggcgaatgca
     2161 gcgtggcagg ggccgatctg agctgggtga atgaggctct ttccgtcaaa accgagctcc
     2221 cgcccctcgt ttgcctcacg caagaacccg tccgcatcgt cgagcttgtt gaatacgccg
     2281 tcgaaacagg caatgcccgc ggcgcgcgcg gcaaggacga tcaattgaag ggacgtcgct
     2341 atggcgctgc ggggtccact aagcggaagg cgcaggtccg cgcgaagatc gttggtgccg
     2401 gcaatcagcc ccgcagcggc gcccgcgatc tccgatgatg caaggacgcc cgccgcggtt
     2461 tcgatcatcg cgagcacggg cttgttgacg gtgcttgcaa ggtcggagac caagtgcgcc
     2521 gaaatggcac ggggaacgac gacgaagtca gccttcgatc gccccaccgc atcaacgtcg
     2581 agcgaatgcc acttcgtgcc gacaccattc actcttatgg cgaccggtac cggccaatcg
     2641 ctcgcgaccg cgtcgagagc tgaattgcgt gcttgcgatt tgtcgtctgg ttttaccgcg
     2701 tcctcaaggt cgagcacgac gaagtcagcg cctgcttgcc gcgccttttc aatcgcgcgc
     2761 gggttcgacg cgggcaagaa gaggatcgac ctcaccgcaa agaggtccac cgtcctgtcg
     2821 tttttcgctt ccgctacagc catcaccgtc gcatcatgcc gcgaacgagg gggagtggga
     2881 aagaccgatg ctaacaatat ttatgattgc cgtcgctgca ctggtcctga tctatgtcat
     2941 gactggagtg accattgtac gccaaggcta tcgctacacg atcgagcact tcgggcgctt
     3001 cgttcgcgtg gcggagcccg ggttcaatta tatcacgcca ttcgtctatc gtgttggccg
     3061 caagatcaat atgatggaac aggtccttga gatccccggt caggagatca tcaccaaaga
     3121 caacgcgatg gttgcggtcg acggagttgt cttcttccag gttctcgatg gggccaaggc
     3181 tgcttacgaa gttgccgatc tctacaccgc cattaccgct ctttcgacga cgaacctgcg
     3241 caccgtgatg ggctcgatgg atctcgacga aaccttgtcg aagcgcgacg agatcaacac
     3301 gcgtctcctt ggcgtcgttg acaatgcgac cgaggcgtgg ggcgtcaaga tcacgcgcgt
     3361 cgagcttcgc gacattcgcc cgccgcagga catcgtcaat gccatgaccc ggcagatgaa
     3421 ggcggaacgg gaaaagcgtg ccgtgattct cgaggccgag ggcttgcgcc agtcggcaat
     3481 cctcaaggcc gaaggtgaaa agcagtccgc gatcctctcc gctgagggcg cgcgcgaagc
     3541 cgcctttcgc gaagcggagg ctcgtgaacg gtccgcccaa gcgaaagcaa cagcaaccaa
     3601 ggctgtgagc gacgcgatcg agcagggaag cgcacaggcc atcaattatt tcgtcgcgca
     3661 gaaatatgtc gatgcggtca cggaatttgc gcgctcacca aacgcgaaga ccatcctatt
     3721 tccggttgaa gcgacgcaat tgatcggaac gcttggcggc at
//
LOCUS       DASRBJ010000064         2897 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_310864,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000064 DASRBJ010000000
VERSION     DASRBJ010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2897
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310864"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(7..1050)
                     /locus_tag="VE968_01870"
     CDS             complement(7..1050)
                     /locus_tag="VE968_01870"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HZU50602.1"
                     /translation="MIDVPVAAVIVNYRTPELIEKCLAALSGERALLPGLKAVVVDGA
                     SDDGSAERLSKHVAGPEYSAWVSFLPLPINGGFAWANNEAIGRLLQQPEPPQFIYVLN
                     PDTEVQRGAAQALATYLLGHPRVGAVGSQLLDADGSLTGSAFRFPTLRDEFSRGARTG
                     LVDRILKVSPIAIEASEAREVDWATGASVMLRSDALREVGLFDEGFFLYHEDIELMWR
                     FRKAGWGVVFEPASRVRHVGGAATGVHSRGSPQPVQPRRPRYWYRSRARLFALSRGRA
                     SAMLAYAAWFGGYSIWALRRATGLGGGAKPFSHQFRDHARYALPRHSDGIPAVRAWNE
                     PSHQPAWMERGWL"
     gene            1292..2119
                     /locus_tag="VE968_01875"
     CDS             1292..2119
                     /locus_tag="VE968_01875"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008198 - ferrous iron binding [Evidence
                     IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HZU50603.1"
                     /translation="MLHLNRISDYLTFDAGECRALGQALSERYRSAAPFPHIVIDDFL
                     DPDVLRKVVAEFPSSDHKSYFDRDQERLKFQFNPQEVSSGVVRNLFAELNGEAFLVFL
                     EEMTGIGGLTSDPYFEGGGLHETKRGGHLGVHADFNIHSRLKLERKLNLLVYLNDEWA
                     PEYGGQLELWDKEMKECVVRVEPILGRAVIFSTDLDSFHGHPEPLTCPPERSRRSIAT
                     YYYSAPEEGLAALPRRTTNFQARPGSDDKTDWQIRRHHLVNDWVPPKLQRLARRLLG"
     gene            complement(2064..>2897)
                     /locus_tag="VE968_01880"
     CDS             complement(2064..>2897)
                     /locus_tag="VE968_01880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50604.1"
                     /translation="AILDVLQSALNAGVTGFMCTTHDTVGAIADEVRANPDTWNGFHF
                     YPGMPYAHKYANAVTELGYLGALKKFIPAGGMVDTLTRGTRAVLGKDVESVMAMLVDA
                     EMKMFAGLETPVVFLQNVVTDLILGLGANEVFASFAAYVRRRYDAEAGFFTMNLPKLL
                     EALHSAGVEEPIVCANVNKAGFRMSGGIEGYREAAAKYPARVIAMSVFASGGIAPSEA
                     IEWVTNEPYVESIVFGASSRGNIENTVALIREFDAARTERPLTRAGDEPSAAVSAAPN
                     H"
BASE COUNT          562 a          911 c          857 g          567 t
ORIGIN      
        1 ttctcgtcac agccagcccc gttccatcca tgccggctgg tggctcggct cgttccaggc
       61 tcgaacggct ggaattccgt cgctgtggcg agggagagca taacgcgcgt ggtctctaaa
      121 ttggtgagag aatggcttcg cgcctccccc caggcctgtt gcccttctca gcgcccatat
      181 ggagtagccg ccgaaccatg cggcataagc tagcatcgca cttgcccggc cgcggctgag
      241 tgcaaacagg cgcgcgcgcg atctgtacca gtagcggggc cttctcggct ggaccggctg
      301 cggcgatccg cgactgtgaa cccccgttgc cgctcccccg acgtgacgca ctcggctcgc
      361 cggctcgaac acaacgcccc acccggcttt tcgaaagcgc cacatgagtt cgatgtcctc
      421 atggtagagg aaaaatccct catcgaagag gccgacctcg cgcagcgcgt ctgagcggag
      481 catcacgctc gctccggtag cccagtcaac ctcccgcgcc tcggatgctt cgatcgcaat
      541 cggcgaaacc ttcaagatcc tgtcaacgag gccggtacgg gcgccacgcg aaaactcatc
      601 gcgcaaggtc ggaaatctga aagcgctccc cgtcagcgac ccgtcggcat cgagaagctg
      661 gcttcccacg gcaccgaccc gcgggtgacc gaggagataa gtcgcgagtg cctgagctgc
      721 tccgcgctga acctctgtgt cagggttcag cacatatatg aactgcggcg gctctggctg
      781 ctgaagcagt cggccgatgg cctcgttgtt ggcccaggca aagccaccgt tgattggaag
      841 cggaagaaac gagacccaag cgctatactc gggaccggca acatgctttg atagtcgttc
      901 cgccgagccg tcgtctgagg ctccgtcgac gacaactgct ttgaggcccg gcaaaagcgc
      961 cctctcgccg gacagcgcgg ccaggcactt ctcgatcagc tcgggcgtgc ggtaattcac
     1021 gatcaccgca gcgaccggga catcgatcat atgtccggca cgatggcgct cggcactgat
     1081 ggagcggggg ctggccgtca tctttctcta atcagggatg agtgactgcg tcgacttgcg
     1141 caatgcctgt gcgacttccc cttcttcgga tccattcggt tccgcgatcc gcgtttaaga
     1201 gctgtcccgt attcgaacga atgcgcgact tccgactgca ggagaccatg cgccagcttg
     1261 gcttgagagg acgcccttgt acaatagcgg aatgctgcac ctgaatagaa tcagtgacta
     1321 tctcacgttc gatgccggtg aatgccgcgc gttgggccaa gctctttcgg aacgctaccg
     1381 cagcgcagcg ccatttccgc acatcgtcat cgatgatttc ctcgaccccg atgtcctcag
     1441 aaaggtagtc gccgaattcc cgtcgagtga tcacaagagc tacttcgatc gcgaccagga
     1501 gcgattgaag ttccagttca atccgcagga agtctcatcg ggggtagtca ggaatctctt
     1561 cgccgagctc aacggcgagg ctttccttgt attccttgaa gagatgaccg gaattggcgg
     1621 attgacctct gacccatatt tcgaaggagg cggcctccat gaaacgaagc gcggcggcca
     1681 ccttggcgtt catgcagact ttaacatcca ctcgcggttg aagctcgaaa gaaagctgaa
     1741 tttgctcgtc tatttgaacg acgagtgggc gccggaatat ggtggtcagc tggagctctg
     1801 ggacaaggaa atgaaagagt gtgtggtccg ggtcgaaccc atcctgggcc gagctgtcat
     1861 tttcagcact gacctcgaca gcttccatgg ccacccggag ccgctgacct gtccgccgga
     1921 acggtcgcgc cgatcgatcg ccacttatta ttattccgcc cccgaagaag gactcgcggc
     1981 cctaccgcgc cgaaccacca attttcaggc gcgtcccggc agcgacgaca agactgattg
     2041 gcaaattcgt cgtcatcacc tcgtcaatga ttgggtgccg ccgaaactgc agcgcttggc
     2101 tcgtcgcctg ctcgggtgag agggcgctcg gtcctcgctg cgtcaaactc gcggatgagc
     2161 gcgacggtat tctcgatatt gccgcggctc gatgcgccga agacgatcga ttccacatac
     2221 ggctcattcg tcacccactc gatcgcctcg cttggcgcaa ttccgcccga ggcgaacacc
     2281 gacatcgcga tgacccgcgc cggatatttc gccgccgcct ctcgatagcc ttcgatcccg
     2341 ccgctcatcc tgaagcccgc cttgttgaca ttggcgcaga cgatgggctc ctcgacgccc
     2401 gcggaatgga gcgcctcaag cagctttggc aagttcatgg tgaagaagcc ggcttcggca
     2461 tcgtagcggc gcctcacgta agcggcgaag ctggcgaaga cctcattcgc accgaggccg
     2521 aggatcaggt ccgtgacgac gttctggagg aagacgactg gcgtttccag accggcgaac
     2581 atcttcatct cggcatcgac cagcattgcc atgacggact cgacgtcctt gcccaggacc
     2641 gcgcgggtgc cgcgggtcag cgtgtcgacc atgccgccgg cggggatgaa cttcttgagc
     2701 gcgcccaaat agccgagctc ggtcaccgcg ttcgcgtatt tgtgggcgta gggcatgccc
     2761 ggatagaagt ggaatccgtt ccacgtgtcg gggttcgcgc ggacttcgtc ggcgatcgca
     2821 cccacggtgt cgtgggtcgt gcacatgaat cccgtgacgc cggcattcag cgccgactgc
     2881 agtacgtcga ggatggc
//
LOCUS       DASRBJ010000065        10618 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_564890,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000065 DASRBJ010000000
VERSION     DASRBJ010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 10618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10618
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_564890"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..485
                     /locus_tag="VE968_01885"
     CDS             <1..485
                     /locus_tag="VE968_01885"
                     /inference="COORDINATES: protein motif:HMM:NF022061.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="EF-hand domain-containing protein"
                     /protein_id="HZU50605.1"
                     /translation="LLIAATLPATFLLVAVAGAQEPQAPKPIKRADYMKTVDARFRQI
                     DSNHDGKITKDEVAAELQREMRIANARIAQQLQAKFRQLDTNHDGVLSLKEFMAIQPA
                     LHPTETPDQMFQRLDRNHDGKITADEFRGPEAARFDHLDANHDGIVTPAELAAASRHK
                     "
     gene            complement(489..797)
                     /locus_tag="VE968_01890"
     CDS             complement(489..797)
                     /locus_tag="VE968_01890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50606.1"
                     /translation="MHVIEIFLPVRRNDGSLQPRGVLGDIRAELVEKFGGLTAYSRAP
                     ADGFWQSEEGQVEQDAIVVIEVMTEETDRQWWRDFRARLEKLLEQQAVLIRSSAVERL
                     "
     regulatory      848..958
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            952..2838
                     /gene="thiC"
                     /locus_tag="VE968_01895"
     CDS             952..2838
                     /gene="thiC"
                     /locus_tag="VE968_01895"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HZU50607.1"
                     /translation="MADIPARTELKVTTGAIRGSRKIYVDARGGIAVAMRAVDLEPSS
                     GEPPLVLYDTSGPYTDPAKRIDIMAGLAELRREWIRGRGDVEEVAQRDVRPQDNGQLG
                     PDRSGGVQPFPNVRKRVLRAKPGMNVTQMHYARRGIVTPEMEYVAVRENLGREVALEH
                     NRDGESFGAEIPNFVTPEFVRDEVARGRAIIPSNINHPETEPMAIGRNFLVKINANIG
                     NSAVASDVASEVEKMVWAIRWGADTVMDLSTGRNIHDTREWIIRNSPVPIGTVPIYQA
                     LEKVGGVAEDLNWEIFRDTLIEQAEQGVDYFTIHAGVRLPYVPLTAKRVTGIVSRGGS
                     IMAKWCLAHHRESFLYERFDEICEIMKAYDIAFSLGDGLRPGCTADANDEAQFAELYT
                     LGELTRKAWQHDCQVMIEGPGHVPMHKIKENMEKQLESCGEAPFYTLGPLTTDVAPGY
                     DHITSAIGAAMIGWFGTAMLCYVTPKEHLGLPDREDVKTGVVTYKLAAHAADLAKGHP
                     TARLHDDALSRARFEFRWRDQFNLSLDPETAESFHDQTLPAEGAKTAHFCSMCGPKFC
                     SMKITQEVREFARLTEAAALGGNEPAVTGSAAADDETDVGMARMSRRFHEEGGEIYIR
                     ASES"
     gene            3040..3519
                     /locus_tag="VE968_01900"
     CDS             3040..3519
                     /locus_tag="VE968_01900"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HZU50608.1"
                     /translation="MSEAAKTQQDRRRVARLGLRLSATMRDKRNGRVRARVIDMSTHG
                     CRIECTTPVEDGTWVWLSIAGLENQYCRVVWHCEEFIGLEFERPLSDAVFEKLLADQG
                     QLSEAAIKELRSIASRAHWLARSATDEQISILAELSRKCAVDSFVEALRGAEPAKRT"
     gene            complement(3557..5014)
                     /locus_tag="VE968_01905"
     CDS             complement(3557..5014)
                     /locus_tag="VE968_01905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50609.1"
                     /translation="MGASASGMKAADKPAAESLLTAFKALSAAERRRHASVLNYWLSV
                     RGDKEFPPLHDLDPLELSDAGPSSILLELISGGHDAEIRHLGEALREEAWPERIIDAP
                     NPSVLSCIAKKLPIVAISRDFLAFEDEYETQGAKTRCSVTLLPLSAGGAWVDYVYALV
                     SVEQVDAKAKSATPQKAKEAPLEIEAESPSDEPRDTEESLAPDENQEGAGEGLSDESL
                     QEPQASEPQVAASSQEEEVPDVAARGKEDEDRHEEDVLQPARQPAPKATPGFSKLLDS
                     LAGLTGFYGSHPVKVQPIVEQPSDEIAGELEDESSTQESQEAACEDSAAEEALREEGN
                     DFGTSEPLAPQEVTAEHAGAEASVSSEGSLQNKLSQVRAKTDEARMARLRANSALYEG
                     LGAAYDFALDAEEAPEEYLRLVEAQGLKIQLRSPMKPVVKLAFAGMCDEPTIKQLEAV
                     LAWAFEQELPRGALAERIEAAGGIAAILSPESKAA"
     gene            5159..6058
                     /locus_tag="VE968_01910"
     CDS             5159..6058
                     /locus_tag="VE968_01910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50610.1"
                     /translation="MRGAWLACVVLCSAAIHLSSAHAQVPLQSAPIVVRGVHDRDKQI
                     RDFIHEMTPAPVRGQLSRFEAPVCPAVAGLAAQPAALVIARIARVASAAGLKIATKPC
                     DANIILIVTNDKNALLKKLEKLRPEYFPPDWSTFEVHDLEHDPYPVAVWQFEGATWAD
                     GRPIGNDIVAATTDVMALQRTTEPQGRLHPSARHQFELAIVVVQRSALSGLTTTQLAD
                     YVAMRALVRTEPKYLDKNADTILNIIDAPMGSAVPLTLTRWDLSFLKAFYASGKNSYA
                     EYQRAEMQQLMKADLEQSEQTAF"
     gene            complement(6113..7072)
                     /locus_tag="VE968_01915"
     CDS             complement(6113..7072)
                     /locus_tag="VE968_01915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50611.1"
                     /translation="MLTSTSAAAQQAPATDTSVDPPTASVQPVQSVQSVQSAQPTDAQ
                     PQATDANSPPPMTGNAPDVSASLPVSESQVKSAPVSRHLKQPARATTASQVRPDRANF
                     ASRDLSGTRAATAAQEPQRGSPTSASVKPKINLASTATAPQPAVRRAATKHDNTVPIA
                     AGGVLALLAIGSAAAAVNRRRPDEEQEEWTGENEIDPMADAGDVHDERLAPSTADEEQ
                     PVIVTPPLSAFRWSSNPSQDDRGSDEPLVEKDDRQTGETWVQRAYRGPSPLNPSVSLK
                     TRLKRAAFFDKRERDAAAGRAEPVDPSAGLPERMIEDQDNEFA"
     gene            complement(7314..7580)
                     /locus_tag="VE968_01920"
     CDS             complement(7314..7580)
                     /locus_tag="VE968_01920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50612.1"
                     /translation="MKMTTKLAIATAFVALAACGSNNNANNSTDMNAGTDLNSTSTTD
                     MNATDMNAGAMSDMNASGNTDLNASGASSNAGGNASGASTNNAM"
     gene            7741..8013
                     /locus_tag="VE968_01925"
     CDS             7741..8013
                     /locus_tag="VE968_01925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA primase/polymerase"
                     /protein_id="HZU50613.1"
                     /translation="MSSAQTTTNHETIRKWVERHKGHPAIVRTGREGGVLRIDFDEPG
                     GNDDERLERISWDEFFRVFDESDVAFLHGEGESRFNKFVAKASADN"
     gene            complement(8082..8399)
                     /locus_tag="VE968_01930"
     CDS             complement(8082..8399)
                     /locus_tag="VE968_01930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50614.1"
                     /translation="MKFRTGMMIAAGVVALAACNKKTPAENQASEIQANADNQAQNVT
                     AAGENEASNIMNSAENKANAVKNESKNEAADIKNEGANEAAAVKNSASNASDNTAAAK
                     KKK"
     gene            complement(8499..9020)
                     /locus_tag="VE968_01935"
     CDS             complement(8499..9020)
                     /locus_tag="VE968_01935"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017181128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HZU50615.1"
                     /translation="MRKLIFAIAAASIAVSPALGALKVGEKAPDFTTMGAVGGKEFKL
                     HLAEQLKKGPVVLYFFPKAFTSGCTAEAHAFSASIDDFKKAGAQVIGMSADNLQTLHD
                     FSTKECRSAFPVATASPEIQKAYDVAWAAHPGITTRTSYVIAPTGKIVMVHDDLDYSQ
                     HVAKTLAAVKALK"
     gene            complement(9066..9506)
                     /locus_tag="VE968_01940"
     CDS             complement(9066..9506)
                     /locus_tag="VE968_01940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1810 domain-containing protein"
                     /protein_id="HZU50616.1"
                     /translation="MSAWVRDPFHLQRFIEAQERVYDAALSELSAGSKQSHWMWFIFP
                     QLAGLGRSFEASFFAIRSIDEARAYLRHPVLGPRLRDCVQAILPWAGLRTPEQILGEV
                     DARKLRSCLTLFDHVETSSLFEQALMVFFDDRDQSTLALLNAPE"
     gene            complement(9544..9729)
                     /locus_tag="VE968_01945"
     CDS             complement(9544..9729)
                     /locus_tag="VE968_01945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0080135 - regulation of cellular response
                     to stress [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HZU50617.1"
                     /translation="MTERFMINRGDAKLMGVAAGIADYSGLDPTIVRLSLVGLTLLTG
                     PVMVLFYVLAGLLAPRR"
     gene            complement(10218..>10618)
                     /locus_tag="VE968_01950"
     CDS             complement(10218..>10618)
                     /locus_tag="VE968_01950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020821230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZU50618.1"
                     /translation="MFFMTQAARPHLKKGSAIVNTTSETTYEGSKLLLDYSSTKGAIV
                     GFTRSLAKNLVKEGIRVNAVAPGPIWTPLNPSGGQPKEKLPEFGKDTPMGRPGQPNEV
                     APSFLFLACEDASYMTGQVLHPDGGNTTSS"
BASE COUNT         2106 a         3112 c         3156 g         2244 t
ORIGIN      
        1 ccttgcttat tgcagcaact ttgcccgcga cttttctgct ggtcgcggtg gctggcgcgc
       61 aagaaccgca ggctccaaaa ccgatcaagc gtgctgatta catgaaaacc gtcgatgcac
      121 gtttccggca gatcgattcc aatcacgacg gcaagattac gaaagacgag gtcgcggccg
      181 agctccagcg tgagatgcgg atcgcgaatg cacgaatagc acagcagctg caggcgaagt
      241 tcaggcagct cgacacaaat cacgacggcg tgctgagcct caaggaattc atggccattc
      301 agccggccct tcatccgacg gagactcccg accagatgtt tcagcggctc gaccgcaatc
      361 atgacggaaa gataaccgcc gacgagttcc gcggtccgga ggccgctcgg ttcgaccacc
      421 tcgacgccaa ccacgacggg attgtcacgc cggccgagct tgcggcggca agtcggcaca
      481 aatgattttc acaatcgctc gacggcggaa ctgcggatta acactgcttg ctgttccagc
      541 agtttctcca ggcgggctcg gaagtcgcgc caccattgtc ggtccgtctc ttcggtcatg
      601 acttcgatga ccacgattgc gtcttgctcg acctggcctt cctcgctctg ccaaaagccg
      661 tccgccgggg cgcgcgaata agccgtaagt cccccgaact tctcaaccag ttcggcccgg
      721 atatcgccca agaccccgcg tggctgaagt gatccgtcat tgcgccgcac cggcaggaaa
      781 atttctatga cgtgcatgaa agcggaacgc agcggactgg cgcctggctc cgcaccggcc
      841 tatggctcct gtcaccctgg ggtagcgatg atcggcgctt gagaggttcg cacgagcgag
      901 caacccattg aacctgatcc ggctgacacc ggcggaggaa gaggagttca tatggccgat
      961 attcctgctc gaacggagct caaggtgacg accggcgcga ttcgaggttc tcggaagatc
     1021 tatgtcgacg cgcgcggtgg aattgctgtc gcgatgcgcg ccgtcgatct cgagccgtcg
     1081 agcggcgagc ccccacttgt gctgtatgat acgagcggac cttataccga tccggcaaag
     1141 cgcatcgaca tcatggccgg actggcggaa cttcgccgcg agtggatccg aggccggggc
     1201 gacgtcgagg aggtcgcgca gcgcgacgtt cggccgcagg acaacgggca gcttggcccc
     1261 gaccggagcg gcggcgtgca accgtttccg aatgtccgaa agagagtgct tcgcgcgaag
     1321 ccgggcatga acgtgacgca gatgcattat gcgaggcgcg gaatcgtcac gcctgagatg
     1381 gaatatgtcg cggtccggga gaatctcgga agagaggtcg ccctcgagca taaccgcgac
     1441 ggtgagagct ttggtgccga aatcccgaac ttcgtcactc ccgagttcgt ccgcgacgag
     1501 gtcgctcgcg gccgagcgat cattccttcc aatatcaacc atccggaaac cgagccgatg
     1561 gcaatcggtc gcaatttcct cgtcaagatc aacgcaaaca tcggcaacag cgccgtcgcc
     1621 tcggacgtcg cgtcggaggt cgagaaaatg gtctgggcga ttcgttgggg cgcggacacg
     1681 gtcatggacc tctcgaccgg gcgcaacatc cacgacacgc gcgaatggat cattcgcaat
     1741 tcacccgtgc cgattggcac tgttccaatc taccaggcgc tcgaaaaggt cggcggcgta
     1801 gccgaggacc ttaattggga aatatttcgc gacactctta tcgaacaggc ggaacaggga
     1861 gtggactatt tcaccatcca cgccggggtc cgtctgccct atgttcccct cactgccaag
     1921 cgagtcactg ggatagtcag tcgcggcggc tcgatcatgg cgaaatggtg tctcgcgcac
     1981 catcgggaga gctttctcta cgagcgcttc gatgaaatct gcgagataat gaaagcctat
     2041 gacattgcgt tcagtcttgg cgacgggctt cgccccggat gcactgctga tgccaatgac
     2101 gaagcgcagt tcgctgaact ttacacgctc ggcgaactta caagaaaggc ctggcaacac
     2161 gactgccaag tgatgatcga aggccccggt cacgtaccga tgcacaagat caaggagaac
     2221 atggaaaagc agcttgaaag ctgcggcgaa gccccatttt acacgttggg accacttact
     2281 accgacgtcg ctcctggtta cgaccacatt acaagcgcga tcggagccgc gatgatcggg
     2341 tggttcggca cggcgatgct ttgctacgtc acacctaagg agcatcttgg gcttcccgac
     2401 cgcgaggacg taaagactgg tgtcgtcacc tacaagctag ccgcgcatgc cgcggatctg
     2461 gcgaagggtc acccgaccgc aagactgcac gacgatgctc taagtcgcgc caggttcgaa
     2521 tttcgttggc gcgaccagtt caacctctct ctcgatcctg agaccgccga gtcatttcac
     2581 gaccagaccc tgcccgccga aggcgcgaag accgcgcact tctgttcgat gtgtgggccg
     2641 aaattctgct cgatgaagat cacgcaggaa gtaagggagt tcgccaggct gacggaagca
     2701 gccgcactcg gcggcaatga gcccgccgtg accggttcgg ctgccgctga cgatgaaacg
     2761 gacgtcggaa tggcacgaat gagccgccga tttcacgagg aaggtggcga aatctacatt
     2821 cgtgcgagcg aaagctgatt gggaaaggga tcctcctggc aagccgcttt cgacgatccg
     2881 ccatgctcga caggagccgc tcagaaaaca cgcccgttga agagccagtg agcaggtaac
     2941 gggcgcgtgg cgtgatcgtt ttctcaggcg gatgccggcc tgatcacaac cattttttca
     3001 ccatttgagc agcagaaggc atgtggggta ggactcacaa tgtcagaagc tgcgaagact
     3061 cagcaggacc ggaggcgcgt cgcacggctt gggcttcgac ttagcgccac catgcgtgac
     3121 aagcgcaatg gacgggttcg ggcgcgcgtc atagacatgt ctacccacgg ttgccgcatc
     3181 gagtgtacca cgcccgtaga ggacggcacc tgggtgtggc tcagcatcgc aggccttgag
     3241 aaccaatatt gccgcgtcgt ctggcattgt gaggaattta tcggcctcga attcgagcgt
     3301 cctttgtcgg atgccgtgtt cgaaaagctt ctcgctgacc aagggcaatt atcggaggca
     3361 gcgatcaagg aattgcgcag catcgcgagc cgagcgcact ggttggcacg ctccgcgacc
     3421 gacgagcaga tttcgattct tgccgagctt tcgcgcaagt gcgccgtcga ctcattcgtt
     3481 gaagcgctcc gcggcgccga gccggccaag cggacttagg agcgagggca agtttactcg
     3541 tcgcaggcga cggccctcag gcggccttgg actccgggct gagaatggcg gcgattccgc
     3601 ccgcagcttc gatcctttcc gctagcgcac cacgaggcaa ctcctgttcg aatgcccacg
     3661 cgagaaccgc ctcgagctgt ttaattgtcg gctcgtcgca cattccggcg aaggcgagtt
     3721 tcaccaccgg cttcatggga gaacggagct ggattttgag accctgggcc tcgactaggc
     3781 gcagatattc ttccggcgct tcttccgcgt cgagtgcgaa atcataagcg gcaccaaggc
     3841 cttcgtagag agcggaattc gctcggagcc gtgccatccg cgcttcatcc gttttcgccc
     3901 gtacctgcga taatttgttc tgcaaggatc cctccgatga aactgaagct tccgcaccgg
     3961 catgttctgc ggtgacctct tgcggcgcga gtggttcact cgtgccgaaa tcattaccct
     4021 cttcacgcag cgcttcctcc gctgccgagt cttcgcaagc cgcttcttgt gattcttggg
     4081 tggatgactc gtcctcgagc tcaccggcaa tttcatcgct cggctgttcg acgatcggct
     4141 gaacttttac cgggtgactc ccgtagaagc ctgtcaatcc cgcgaggctg tcgagcagct
     4201 tcgaaaagcc cggtgtagct ttgggtgcgg gctgacgcgc gggttgaagt acgtcctctt
     4261 cgtgacggtc ttcatcctct ttcccgcgag cagcgacatc gggaacttct tcctcttgag
     4321 aagaagcggc gacttgcggt tcacttgctt gcggctcttg aagtgattcg tcggaaaggc
     4381 cctcgcccgc tccttcttga ttttcgtcgg gcgctagtga ctcttcggta tcgcgcggtt
     4441 cgtcggatgg cgattccgcc tcgatttcga gtggggcttc tttcgccttt tgcggcgttg
     4501 ccgactttgc cttcgcgtcg acctgctcga cgcttacgag cgcgtagaca tagtcaaccc
     4561 acgcaccgcc agcgcttagt ggcaagagcg ttaccgagca gcgagtcttg gctccttgag
     4621 tttcatattc atcctcaaag gcgagaaaat cgcgactaat ggcgacaatc ggcagcttct
     4681 tggcgataca ggaaagcacc gacggattgg gggcgtcgat aatccgctcg ggccatgctt
     4741 cctctcgcaa tgcctctcca aggtgtcgga tctctgcgtc gtgccctccg ctgattagct
     4801 cgagaaggat cgagcttggt ccagcgtcgg aaagttccag cgggtcgaga tcgtgcaagg
     4861 gtgggaattc cttgtcgccg cgcaccgaca gccaatagtt gagaacgcta gcgtgacgcc
     4921 gccgttcagc agcggagagg gccttgaatg cagtcaggag cgattccgca gcgggcttgt
     4981 ccgctgcctt catgcccgat gccgaggccc ccatttccga ctccgcttgc tttacccgtg
     5041 cgcgattgtg caccggtggt gcttagaaac cgttaaagag gcgattgttc tgttgagccg
     5101 ccgtagtccg cgtcctactc gggtcgcgat ctccttctcg tccaagggag cgactccaat
     5161 gcgtggtgct tggcttgcct gtgtggtgct ctgcagtgct gccatccact taagctccgc
     5221 tcatgcccaa gtgccattgc aatcggcgcc gatcgttgtt cgcggggtgc atgaccgtga
     5281 taagcagata cgggacttca tccacgagat gacgcccgcc ccggttcgcg gccaacttag
     5341 ccgcttcgag gctcccgtat gcccggcagt ggctgggcta gccgcacaac cggcagcact
     5401 tgtcatcgcg cgtattgcgc gtgtcgcatc cgctgccggt ctcaagatcg caacgaagcc
     5461 ctgcgatgcc aacatcatcc tcatcgtaac caacgacaag aacgcgctgc tgaaaaagct
     5521 tgaaaagctg cgtcctgaat acttcccgcc ggactggagc acgttcgagg tccacgatct
     5581 cgaacatgat ccgtatcccg ttgcggtgtg gcaattcgag ggggcgacct gggctgacgg
     5641 tcgcccgatc gggaatgaca tcgttgctgc aaccaccgat gtaatggcgc tgcagcggac
     5701 caccgaaccg caggggcgct tgcacccttc ggctcgtcat cagttcgaac ttgcaattgt
     5761 ggtcgttcag aggagcgcac tttcggggct cacgacgacg cagcttgccg attatgtcgc
     5821 gatgcgcgcc cttgttcgca ctgaacccaa atatttggac aagaacgctg ataccattct
     5881 caatatcatt gatgcaccaa tgggcagtgc agtcccgctc acgctgactc ggtgggatct
     5941 aagcttcctt aaagctttct atgcgagcgg gaagaacagc tacgcggaat accagcgcgc
     6001 agagatgcag cagcttatga aggccgatct cgagcaatcg gagcaaacgg cattttaggt
     6061 tgacggctgc cgccggccga gaacagccgg cggcacatcc ttcattgcta aatcaggcga
     6121 attcgttgtc ctgatcttcg atcattcgct cgggaagccc tgcggatgga tcgaccggct
     6181 cggcacggcc cgcggcagca tcgcgttcgc gcttgtcgaa gaaggcggcg cgcttcaggc
     6241 gcgtcttcag cgatacggat gggttgagcg gactcggacc gcgataggcg cgctgcaccc
     6301 aggtctcgcc cgtttggcgg tcgtccttct cgaccagggg ttcgtccgaa cctcggtcgt
     6361 cttgacttgg gttgctcgac cagcggaatg ccgaaagcgg cggtgtgact attaccggct
     6421 gctcttcatc agccgtgctc ggcgcaaggc gttcgtcatg gacatctccg gcgtcagcca
     6481 taggatcgat ctcattttcg ccggtccatt cctcttgttc ctcgtcaggt cgccggcggt
     6541 tcacggctgc cgccgcgctg ccaatcgcga gcagcgcaag gacgccgccg gcggcgatcg
     6601 gcaccgtgtt gtcgtgcttc gtagccgcac ggcgaacggc cggctgcggc gctgtagccg
     6661 tcgaggccaa gttgatcttc ggcttcacgg acgcggacgt cggcgaccca cgctgaggct
     6721 cctgtgccgc cgtcgctgct cgtgttccgc ttaggtcgcg cgacgcaaag ttcgcgcgat
     6781 ccgggcgcac ttgggacgcg gtcgttgctc ttgcaggctg tttcagatgg cgtgaaactg
     6841 gtgcggactt cacttggctt tcggaaacag gcagagatgc ggacacatcg ggagcattgc
     6901 ctgtcatcgg cggcggacta ttcgcgtcgg tcgcttgggg ctgggcgtcg gtcggctgcg
     6961 ccgactgcac cgattgcacc gattgcaccg gctgtacgga cgcggtcggc ggatcaacgc
     7021 tcgtatccgt cgccggggcc tgttgggcag cggctgaagt tgaggttagc acaagggccg
     7081 cggcaatcgc tggcaatgcg ctcgctcggg taagatttac tctgtccata atgagtaaaa
     7141 acacccaccg ctccgaccag tggcagcatt atcggctggg cggccggctg ttacggtgaa
     7201 cgacaggcgg ctctcggcgg caaattccgg ttaattgccc tggcagagat caacgacaaa
     7261 aagggcgcct gccatcttag cagacgccct tccggcgcgt gctcttcgcc ggattacatg
     7321 gcgttatttg tactcgcgcc cgacgcgttg ccgccagcat ttgacgaggc gcccgatgca
     7381 ttaaggtcgg tgttgccgga ggcgttcatg tcgctcatcg cgccggcatt catgtccgtc
     7441 gcattcatgt cggtcgtgct ggttgaattc agatccgtgc cggcgttcat gtcggtgctg
     7501 ttgttggcgt tattattgct tccgcaggcg gctagcgcca cgaaagcggt cgcgatcgcg
     7561 agcttggttg tcattttcat gggctttcct tccccttggt cgattggccg ctgcaaagcg
     7621 cttgccgctg aattcggttc ctagtgctga ttcactcggc tcgtgcgccg aaggaggaac
     7681 cgcgccgaca cgccaaacat tttccgcagc gacgtaggga atgatccacg gaggaaactg
     7741 atgtcgagcg cgcagacaac gacaaatcac gaaacgatcc gcaaatgggt tgaacgtcac
     7801 aagggccatc cggcaatcgt tcgcacggga cgcgaaggtg gtgtcctaag aatcgatttc
     7861 gatgagccag gcggcaacga cgatgagcgg ctggagcgga tcagctggga tgaattcttc
     7921 cgcgtgttcg atgaaagcga cgtcgcgttc ctgcatggcg aaggtgagag ccgtttcaac
     7981 aagttcgtgg ccaaggcgtc cgctgacaat taggggatta gaaaaagggc gcccgttgcc
     8041 ggacgccctt cccgtcttca acgcgtgctc tcgcgtgaat gttatttctt cttctttgct
     8101 gcggccgtat tgtcgctcgc gttcgatgcc gaattcttca cagcagcggc ctcgttggcg
     8161 ccttcgttct tgatatcggc cgcctcgttc ttcgactcgt tcttgacagc attcgccttg
     8221 ttttcggcgc tgttcatgat gttcgacgct tcattttccc cggcggcggt cacgttctgc
     8281 gcctgattat cggcattcgc ttgaatttcc gaagcctggt tttccgcagg agtcttcttg
     8341 ttgcacgccg cgagcgcgac aacgcctgct gcaatcatca tgccggttct gaatttcatg
     8401 acgctttccc cttgttagtg cccgaagggc gagcgctcgg agataacgac cgtcaatgac
     8461 cgctacatgt ctgcaacatt aactgccgtt atgtcgcgct atttgagcgc ctttaccgca
     8521 gcgagtgtct tggcgacatg ttggctgtaa tcgagatcgt catgcaccat gacgatcttc
     8581 cctgttggcg cgatcacgta ggaagtgcgc gtggtgatgc ccgggtgtgc ggcccaggcg
     8641 acatcatagg ctttctgaat ttccggcgag gccgtcgcaa cggggaaagc gcttcgacat
     8701 tcttttgtcg agaagtcgtg aagtgtctgg aggttgtcgg ccgacatgcc gatgacctgt
     8761 gcgccggcct tcttgaaatc gtcgatcgaa gcgctgaatg cgtgcgcctc ggccgtgcac
     8821 ccgctcgtga atgccttcgg gaagaaatag agtacaaccg ggcccttctt gagctgctca
     8881 gcaaggtgta gcttgaattc cttgccgcct acggctccca ttgttgtgaa gtcgggcgcc
     8941 ttttcgccca ccttcagcgc gccaagagcg ggtgaaacgg caatgcttgc agctgcaatt
     9001 gcgaagatta gcttgcgcat ggcggtctcc gtcataagcc agaaagaaac tcgtaggtgc
     9061 ggtaattact cgggcgcgtt caacaatgcg agagtggact gatccctgtc atcgaagaac
     9121 accatcaacg cttgttcgaa caagctcgaa gtctccacat gatcgaaaag cgtcaagcag
     9181 gatctgagct tgcgcgcatc gacttctcca agaatctgtt caggcgtgcg caatcccgcc
     9241 cacgggagga tcgcctggac acaatcgcgc aacctcggac caagcactgg atggcgcaga
     9301 tacgcacgtg cctcgtcgat tgaccgtatc gcaaaaaagc ttgcttcgaa gctgcggccg
     9361 aggccagcga gctgcggaaa aataaaccac atccagtggc tttgcttgct accggcggaa
     9421 agttccgaaa gtgcggcatc gtaaacccgc tcttgggcct cgatgaagcg ctgtaaatgg
     9481 aaagggtcgc gcacccatgc gctcatggac atgtggtacg gatttggaaa gaactgctcg
     9541 cgcctatcga cgcggcgcga gcagcccagc gagcacgtaa aataacacca tcaccggccc
     9601 cgtcagtagc gttaggccga cgagtgaaag tcgaacgatc gttggatcaa gtcccgaata
     9661 atccgcaatc ccagcggcga cgcccatcaa cttggcgtcg ccacggttga tcatgaagcg
     9721 ctcagtcatt gtcacttgct ttccaatttg aagtttaggc gattggaaga gaagtcgcgg
     9781 cggaaacaag caccaatgcc gacaggaacg caccagcgat aatcgtagcc gtctcgcgaa
     9841 tggaagcagt cgtgaacatc gtaaatcccc ttgcttagtg tctgggcccg acgatcgggt
     9901 ccacgcaaaa ggtaagtgca aggtgcgtgc caattcaaaa aaagcattgt tttccaatgc
     9961 ccaccgaccg cgagtggcaa atactgctac aagctcaagc catttgttgg tggaaattgc
    10021 cacaccgttg cggaaattgg acggtcgccg tgtccagaaa tggacagttt aaattcctcg
    10081 cgcgcgcgga tcgggtcagt tggcggaatg aacgcgcagt gccgccgggt tcgggaattc
    10141 gcccgcctgc ccccaaaagt gccgctaagc caatgaccct tcgtgatcgc gagcgatcac
    10201 cggcaacgaa ttgcgcgtca gctcgacgtt gtgttcccgc catccggatg aagcacctgt
    10261 ccagtcatgt agcttgcgtc ctcgcaggcc aggaacagga atgacggcgc gacctcgttc
    10321 ggctggccgg gccgccccat cggcgtgtct ttcccaaact ccgggagctt ttccttcggc
    10381 tgtcctccgg atggattgag cggcgtccag atcggtccgg gtgctacggc gtttacccga
    10441 atgccttcct tgacgaggtt ctttgcgagc gagcgcgtaa atccgacgat tgcgcccttg
    10501 gtcgaactat aatcaaggag caacttcgag ccttcgtaag tcgtctcgga tgtcgtgttg
    10561 acgatggcgg agcctttctt gaggtgcggt cttgcggctt gcgtcatgaa gaacatgc
//
LOCUS       DASRBJ010000066         5365 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_213810,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000066 DASRBJ010000000
VERSION     DASRBJ010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5365
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213810"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..253
                     /locus_tag="VE968_01955"
     CDS             <1..253
                     /locus_tag="VE968_01955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006960067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50619.1"
                     /translation="EDAGRLESNGCVRLEDAPRFARWLFNGHAPRTAGARPEQKVELP
                     TPVPLYITYLTAVPSGTSIVYFDDFYGKDREQARQFAGR"
     gene            complement(250..2931)
                     /locus_tag="VE968_01960"
     CDS             complement(250..2931)
                     /locus_tag="VE968_01960"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HZU50620.1"
                     /translation="MRRTIFRKPPEVELQAPARARAQEALLFDLRDHSESFDLALAER
                     RLGAWTYAPWLVLAGHVLIAASFLFHAPVPSTATAAGIVAPLIVSILLDCAAGALMLF
                     WRKLQMAPHTVCRLMCGYLGTTGGFWTLACIASGSLKFADPSLVTVAICAGFFIRSIV
                     ALPGPSLAIVNALVAFATTVLFPQAPQITFAIDGMALLMVGYSVLTTQKTLIAGRRRL
                     AIEWQAKKALNFVDEFENSGRGWFWETDALGTLSYVSGQLAEDFECEPQALLGRQFTD
                     LVSVDNGSEAIEEGKTLGFHLSARFPFSDVVVRPASQQDVHWSLSGNPIFDERGRFLG
                     FRGIGTDLTEQRKSEREITRLARFDSLTGLPNRAMMRQTLDEALRNAAHRQKGCALFM
                     IDLDRFKNVNDTLGHPIGDALLRQVADRLKSVMGNHGQVGRLGGDEFQAILPGAVDIG
                     LLESLARTLIEQVSRPYMIEGYKVTIGASVGVVIGDPGRASADALVRNADLALYAAKG
                     AGRGKHCFYEPSMHSEAAERQLLENDLRQAIERGELSVHYQPIVRTAGEEVSGFESLV
                     RWQHPTRGPISPSKFIPLAEEAGLIAKIGEWVLRTALEEAAHWPDHVRVAVNLSPLQF
                     NDPNVVGIISTHLKETGVRAERLELEITEGVFLADGDSTDDTFARLKELGVRLALDDF
                     GTGYSSLGYLKKAPFDKIKIDQSFVRGAASTINRNAAIIRAIVTLAETLGMDTCAEGV
                     ETHDDLQLIRELGVSMVQGYIFGKPSPAETARTLANTVTLEADGFARVREPRHRLMRR
                     ALASIGGETIELKMRNISSMGALVECDVALSPGTEMTLDIVGAGPVRGIVRWAQAGRF
                     GLRFDYEFDLGRLAPKKEKRVDNRLSGSSYSSQRAIG"
     gene            complement(3036..3962)
                     /gene="cysK"
                     /locus_tag="VE968_01965"
     CDS             complement(3036..3962)
                     /gene="cysK"
                     /locus_tag="VE968_01965"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004124 - cysteine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HZU50621.1"
                     /translation="MKAANVLETIGNTPHIRLNRLFGNRAEVWMKSERANPGGSIKDR
                     IALAMIEDAERSGKLKPGGTIIEPTSGNTGIGLAMVAAVKGYKLILVMPDSMSVERRR
                     LMLSYGAQFELTDRAKGMKGSVDRANELVAATPGSWMPQQFDNPANVDVHRRTTAQEI
                     LRDFADDPLDAIITGVGTGGHITACAEVLKPVWPKLKVFAVEPALSPILSGGAPGPHP
                     IQGLGANFVPSILNTEILDGVIDVDAEKAKEMARRAAREEGLLIGISSGAALAGVEQK
                     LADLGERPRILTFNYDTGERYLSVPDFLPAEG"
     gene            complement(3966..5234)
                     /locus_tag="VE968_01970"
     CDS             complement(3966..5234)
                     /locus_tag="VE968_01970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZU50622.1"
                     /translation="MSLFPEPLRIPAFRAFWLSRLTWTIGSLSMVIVIGWQVYDIARQ
                     TMGLKEAALRLGIIGVVQFIPLFLLTLVTGWTADRLDRRRIARAAVALELCCAAALGL
                     LAWRHQTTLAALYTVAALLGVGRAFAGPALSALAPNLVPREILPRAIALSSIAWQTGA
                     VLGPALGGYLYAFAPYAPYATSGVLFAIAFLSLLAIPPLGRTAIDRRPNPWSQMVEGL
                     KYVRHNRLVLGAISLDLFAVLLGGATAMLPVFARDVLHAGPEGLGHLRAAPAIGATLT
                     AAFFSVRPLKHDVGLKMLGAVAVFGAATILFGFSRSMPLSLLCLALLGSADMFSVYVR
                     QSLIQLYTPDAMRGRVGAVSSLFISASNELGEAESGFVGAVIGPVAAVIAGGVGAMLV
                     VLLWSWWFPELRLAKSFDPPDLRTAQSQES"
BASE COUNT         1102 a         1614 c         1646 g         1003 t
ORIGIN      
        1 cgaagacgct ggtcggctcg agagcaacgg ctgtgtccgt cttgaggacg cgccgcgttt
       61 tgcccgatgg ctgttcaatg gccacgcgcc gcggacagcg ggcgctcgac cggagcaaaa
      121 ggtcgagctt ccaacgccag tcccgcttta catcacctat ctgacggcgg tgcccagcgg
      181 gacgtccatc gtctacttcg acgatttcta cggcaaggat cgagaacagg cgcgccagtt
      241 cgcggggcgc tagccaatcg cacgctgcga cgaatagctc gagcctgaga gacgattgtc
      301 gacacgcttt tctttcttgg gcgcaagtcg gccaagatcg aactcgtagt cgaatcgaag
      361 gccgaatctt cctgcctggg cccagcggac gatcccgcgc accggtccgg cgccgacgat
      421 gtcgagggtc atctcggtac cagggctcaa tgcgacgtcg cattcgacaa gagcgcccat
      481 cgacgagatg ttgcgcatct ttagctcgat cgtctcaccg ccgatcgagg ccagcgctcg
      541 cctcattagc cgatggcgag gttcgcgaac gcgcgcaaac ccatcggcct cgagcgtgac
      601 ggtgttcgca agtgtgcgtg ccgtttcagc ggggcttggc ttcccgaaga tatagccttg
      661 caccatgctg acgccgagct cgcggataag ctgcaaatcg tcgtgggtct cgacgccttc
      721 agcacaggta tccatgccga gggtttccgc gagcgttacg atcgcccgga tgatcgccgc
      781 gttccggttg attgttgacg ccgctccgcg aacgaagctc tggtcgatct tgatcttgtc
      841 gaacggagct ttcttcaagt agccaagtga gctgtagcca gtgccgaagt cgtcaagcgc
      901 gagccgtacg ccaagctctt tcaggcgtgc gaacgtgtca tccgtcgagt caccatccgc
      961 aaggaaaacg ccttcggtaa tctcgagctc gagccgctcg gctcgaacgc cggtttcctt
     1021 aaggtgcgtc gagatgatgc cgacaacgtt ggggtcattg aactgaagtg gcgacaggtt
     1081 gaccgcgaca cggacgtgat caggccaatg ggcagcctcc tcgagtgccg tccggagcac
     1141 ccattcgccg atcttggcaa tgagccccgc ctcttccgcg agcgggatga acttggaggg
     1201 agaaatcggt cctcttgtcg gatgctgcca tcgtacaagt gactcgaacc ctgaaacttc
     1261 ttcgcccgcg gttcgcacga tcggctggta atgaaccgat agctcgccac gctcgatcgc
     1321 ttgcctgaga tcattttcga gcagctgccg ctcggccgct tcgctgtgca tcgaaggttc
     1381 gtagaagcag tgcttgccgc gcccggcacc cttggcggcg tacaaggcaa gatcggcgtt
     1441 gcgtacaagc gcgtcggcgc ttgctcgtcc gggatcgccg atgacaacgc cgactgaggc
     1501 accaatcgtc accttgtagc cttcaatcat gtatggccgc gagacttgct cgatgagcgt
     1561 tcttgcaagc gactcaagaa gaccgatgtc tacggcaccg ggaaggattg cctggaattc
     1621 gtcgccgccg agccgtccga cctggccgtg gttccccatc accgatttca atcggtcggc
     1681 aacctggcgc aagagtgcat cgccgatcgg atgaccaagc gtgtcgttga cgttcttgaa
     1741 ccgatcaaga tcgatcatga acagcgcaca gcccttctgt cggtgtgccg cgttgcgaag
     1801 tgcttcgtcg agcgtctggc gcatcatcgc ccggttcgga agccccgtca gcgaatcgaa
     1861 gcgcgcgagg cgcgtgattt cacgttcgga ttttcgctgc tcggtaaggt cggtgccgat
     1921 tccgcgaaac ccgaggaaac gtccgcgctc gtcgaagatc ggattgccgg acaaggacca
     1981 gtggacgtcc tgctgacttg ctggccgcac gacgacatct gaaaaaggaa agcgtgccga
     2041 gagatggaag ccgagggtct ttccttcctc aatcgcctcc gagccattat cgaccgatac
     2101 gaggtcagtg aattgccgcc cgagcagcgc ctgtggctca cactcgaagt cttcagcgag
     2161 ttgtcccgag acgtaggaga gggttccaag cgcgtctgtt tcccagaacc agccgcggcc
     2221 gctgttctcg aactcgtcga cgaaattcag cgccttcttg gcctgccatt cgattgccag
     2281 ccgccgacgg cctgcgatta gcgtcttctg ggtcgtgagc acgctgtatc cgaccatcag
     2341 caacgccatg ccatcgattg caaacgtgat ttgcggggcc tgcggaaaca agactgtggt
     2401 tgcaaaggca acgagtgcat tgacgatcgc gagagagggg ccggggaggg cgacaatcga
     2461 gcgaatgaag aatccggcgc aaattgcgac cgtgacgagc gagggatctg cgaacttcag
     2521 cgatccactt gcaatgcacg cgagcgtcca aaatcccccc gtcgtaccaa gatagccgca
     2581 catgagtcgg cacaccgtat gcggcgccat ttgcagcttt cgccagaaaa gcatgagcgc
     2641 gccggccgcg cagtcgagga gtatcgagac aatcagcggt gcaacaatcc cagccgccgt
     2701 tgcggtgctt ggaactggcg cgtggaagag aaaactcgca gcaatcaaca cgtgccccgc
     2761 gagcaccagc cacggcgcat atgtccaggc accgaggcgt ctctcggcaa gtgcgaggtc
     2821 aaagctctcg ctgtggtcgc gaagatcaaa aagcaacgct tcctgggcgc gggcgcgtgc
     2881 cggcgcttgc agttccactt ccggcggctt gcggaagatt gttcgacgca tggggctccc
     2941 acctgatgtc gcggatggac gacccggcgc gacttaggtt gaagtcttag acctccgagt
     3001 taactgccac ccgaacgaac agggttagcg tcgtcttaac cttcggcggg aaggaaatcc
     3061 gggacggaca gatagcgctc gccagtgtca tagttgaagg tcaagattcg tggcctctcg
     3121 ccgaggtcgg cgagcttttg ctcgacaccg gcaagcgccg cgcccgacga aatgccgatg
     3181 agcaatcctt cttcgcgcgc tgcacgccgt gccatttctt tcgccttctc ggcatcgaca
     3241 tcgatgaccc cgtcgagaat ttcagtgttg agaatgctcg gcacgaaatt cgcgccgaga
     3301 ccctggatcg ggtgagggcc aggcgctccg ccgctcagga taggcgaaag cgccggttcg
     3361 acggcgaaca ccttgagctt gggccagacg ggtttgagga cttcagcgca tgccgtgatg
     3421 tgcccgccgg ttccgacgcc agtgatgatg gcgtcaaggg gatcgtcggc aaagtccctc
     3481 agaatctcct gcgcggtcgt gcgccgatga acgtcgacat tcgccgggtt gtcgaactgc
     3541 tgcggcatcc agcttcctgg cgttgcggcg acgagctcgt ttgcgcgatc gaccgagccc
     3601 ttcattccct tggcgcgatc cgtcagctcg aactgggcgc cataggaaag catgagcctt
     3661 cgtcgttcga cgctcatgct gtccggcatg acgaggatca gcttatagcc cttcactgct
     3721 gcgaccattg caaggccaat gcctgtattt cctgacgttg gctcgatgat cgttccgccg
     3781 ggcttgagct tgccgctgcg ctcggcgtcc tcgatcatgg caagagcaat tcggtccttg
     3841 atcgatccgc cgggatttgc gcgttcggat ttcatccaga cttccgcgcg gttgccgaac
     3901 aggcgattca gacggatgtg cggtgtgttg ccgatggtct caaggacgtt cgcggccttc
     3961 atggctcagc tctcctgcga ttgtgcggtg cgcaaatcgg gtggatcaaa gctttttgca
     4021 agccgcagct cgggaaacca ccatgaccag agtaaaacga cgagcatcgc gccaacaccg
     4081 cccgcaatca cggcggcaac gggtccaatc accgcgccta caaaccccga ctccgcttcg
     4141 ccgagttcgt tcgaagccga gataaagagc gacgagacgg cgccgacccg tccgcgcatg
     4201 gcatcgggcg tgtagagttg gattagcgat tgccgaacat agaccgaaaa catgtccgct
     4261 gatccaagca gtgcaaggca gagcagcgac aggggcattg atcgggagaa cccaaacagg
     4321 atcgtcgccg caccgaatac tgcgaccgct ccaagcatct tcaagccgac atcatgtttc
     4381 agcggccgca ccgagaagaa ggccgccgtg agcgttgcgc caatggccgg cgcggctctt
     4441 aaatgcccaa gaccctccgg accggcatgg agaacgtcac gagcgaagac cggcaacatc
     4501 gctgttgctc ctccgaggag aacagcaaaa aggtcgaggc tgatcgcgcc gaggacgagc
     4561 cgattgtgac gaacatattt gagcccttcg accatctgtg accaggggtt cggccgtcga
     4621 tcgatcgcgg ttcgtccaag aggcgggatc gcgagcaggc tgaggaaagc aatggcaaaa
     4681 agcacaccgc ttgtcgcgta cggcgcataa ggagcgaagg cgtagagata ccccccaagt
     4741 gccggaccca acaccgcgcc ggtctgccag gcgatcgatg ataaggcgat tgcacggggc
     4801 aagatctccc gggggacgag gttgggagcc aaggcgctta gcgccggccc agcgaacgcc
     4861 cgtccgacgc cgagaagtgc tgccacggtg taaagtgcgg cgagcgtcgt ctgatggcgc
     4921 caggcgagca ggccgagggc ggccgcacag caaagttcca gtgcaaccgc cgcgcgcgcg
     4981 atccgtcggc ggtcgagccg atcggctgtc cagccggtga caagtgtcag gagaaataac
     5041 ggaatgaatt ggacaacgcc gattattcca agccgaagcg ccgcttcctt gaggcccatt
     5101 gtctggcgcg caatatcgta aacctgccag ccgatgacga tcaccatcga gaggctgccg
     5161 atcgtccagg tgagacggga cagccagaat gcgcggaatg ccgggatacg cagcggttcg
     5221 ggaaacaggc tcactctttg gcgcgtagct ttacgtctgg ttcgcggcaa cactcgccgt
     5281 ccgatcctcg gcacctagaa gatcaagacg tcgcatgagc catggcatgg tgagaccctg
     5341 cacgaggatc gagaaggcga cgacg
//
LOCUS       DASRBJ010000067         2955 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_515182,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000067 DASRBJ010000000
VERSION     DASRBJ010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2955
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515182"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..183
                     /locus_tag="VE968_01975"
     CDS             <1..183
                     /locus_tag="VE968_01975"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HZU50623.1"
                     /translation="GLESRIGSIAPGRDADLFIVEGNPAKDISDIEKVLVVFKDGVGF
                     DSRKLIDSVRGRYGRY"
     gene            complement(193..648)
                     /gene="argR"
                     /locus_tag="VE968_01980"
     CDS             complement(193..648)
                     /gene="argR"
                     /locus_tag="VE968_01980"
                     /inference="COORDINATES: protein motif:HMM:TIGR01529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006525 - arginine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HZU50624.1"
                     /translation="MADLKDRRQRAIADLIRSNALASQEELAERLAAQGFAVTQATIS
                     RDLEQIGAVKIRREGQLSYALSGEVPRGPNPRLAAVFREWVRSVEPAASLVVIKTPPG
                     SAHLVGVVLDQSELSEIAGTICGDDTIFVACRGEAEAIALSSRLRGELQ"
     gene            704..1711
                     /gene="argC"
                     /locus_tag="VE968_01985"
     CDS             704..1711
                     /gene="argC"
                     /locus_tag="VE968_01985"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: protein motif:HMM:TIGR01850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HZU50625.1"
                     /translation="MIRTAILGASGFVGAELLRLIASHPEFCAAGLFGDSRAGQPLGQ
                     VHPHLAAAYPGELVTRFDESALDGIDLLFAALPHGQSQRLAGAILERSIPFVDLGADF
                     RLDDAGSYERWYGHAHQAPQFLDRFVYGIPELNREAITIAKAVATAGCYATAAILALK
                     PLVDAGLVKRETLIVDAASGVSGAGREAKEATSFSTVDASFSAYGLLNHRHTAEMEMA
                     IGGTVLFTPHLVPMTRGILATCYAEAAGRCDPLETLRRAYADEPFIHVTEQPPATKWV
                     SGSNGVQLTARYDERTNRVLVLSAIDNLGKGAAGQMIQCANLMLGLQETAGLTTIGVY
                     P"
     gene            1708..2868
                     /gene="argJ"
                     /locus_tag="VE968_01990"
     CDS             1708..2868
                     /gene="argJ"
                     /locus_tag="VE968_01990"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: protein motif:HMM:NF014065.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HZU50626.1"
                     /translation="MSITAPEGFVAAGCHAGIKRRKFDMALIATDDRKPVPCAAVFTQ
                     NKFAAPPVEFDRATLAANGGRAAAIIINSGNANAGTGLAGYKNAERMAAATGEALAIA
                     NSDVLVCSTGIIGTPLPMEPILSHVPKLAKKLSVEGSDDAARGILTTDHKTKQVVVEG
                     STFVLGGMAKGCGMIAPNMATMLAFLTTDADVPTSVMRKALKTAADGSFNTLNVDGAM
                     STNDTAILLASGRRGKADHEEFANAVLTACRDLTLQMARDAEGMTRMAHLTVSGAASN
                     EDARIAAKAIVENNLVKCSWYGGDPYWGRLMAAAGSTRVDLDVEKSFVAYGGIAVARG
                     GVGIEHDGQALAEHMMGDEIEIEVHLGHGRGTARMIGIDLGPGYIKENSKTS"
BASE COUNT          601 a          890 c          922 g          542 t
ORIGIN      
        1 ggcctcgaaa gccgcatcgg gtcgattgct cctggaagag acgccgatct tttcatcgtc
       61 gaaggaaatc ccgcgaaaga tatcagcgac atcgagaaag tcctcgttgt cttcaaggac
      121 ggcgtggggt tcgacagccg caaattgatc gacagcgtcc ggggccgtta cggacgctac
      181 tgacgcgacg atctattgca gctcgccccg cagcctcgac gagagagcaa ttgcttcggc
      241 ttccccgcgg caagcgacaa agatggtgtc gtcgccgcag atggtgccgg cgatttcgct
      301 gagctcggac tggtcgagga caacgcccac gagatgcgct gaaccgggcg gagtcttgat
      361 tacgacgaga ctggcggcag gttcgaccga gcgcacccac tcgcggaaca ccgcggcaag
      421 gcgcgggttc ggtccacgag ggacctcgcc cgaaagtgca tagctcaact gaccctctcg
      481 gcggatcttc accgcgccaa tctgttcaag atcacgcgag atggtcgctt gcgtaacggc
      541 gaacccttgc gcggcgaggc gctcggcgag ttcttcctgg ctcgcaagcg cattggagcg
      601 gatcaggtcg gcaatcgcac gctggcgcct gtccttcaaa tcggccatcg catgattatg
      661 catatgcttg cataaaaatg caatcgcgtg gataggctcg ctcatgattc ggacggcgat
      721 tctcggcgca tcgggatttg ttggtgctga gctcctgcgg ctcattgcat cgcatccgga
      781 attctgcgcc gctggactgt tcggcgacag ccgggctggg cagccgctcg ggcaagtgca
      841 tccgcacctc gcggctgcct atcccggcga gctcgtgaca cgatttgatg aaagcgcgct
      901 cgacggaatc gacctcctgt tcgccgctct cccgcacggc caaagccagc gcctggcggg
      961 cgcgatcctt gagcgcagca ttccgttcgt tgatcttggt gctgacttca ggctcgacga
     1021 tgctggctcc tacgagcgct ggtacggcca tgcccaccag gcgcctcagt ttctcgaccg
     1081 gttcgtttac ggcattcccg agctcaatcg cgaagccatc acgatcgcca aggcggtcgc
     1141 aacggccggc tgctatgcga cagccgcgat ccttgctctt aagccgctcg tcgacgccgg
     1201 cctcgtcaag cgggagacct tgatcgttga tgccgcctcg ggcgtcagcg gcgccggacg
     1261 cgaggcaaag gaagcaacgt ccttcagcac ggtcgacgca agcttttcgg cctacggtct
     1321 tctgaaccac cgccacacgg cagaaatgga gatggcgatc ggcggcacgg tgctattcac
     1381 gccacatctc gtgccaatga cccgcgggat tcttgcgacc tgctacgccg aggcagccgg
     1441 tcgctgcgac ccgctcgaaa cccttcgccg agcctatgca gacgagccgt tcattcatgt
     1501 gaccgaacag ccgccagcga ccaagtgggt gagcggctca aatggagttc agctcaccgc
     1561 ccgctacgac gagcgaacga accgagttct tgtcctttcg gcgatcgata acctcggcaa
     1621 gggtgccgcg ggccagatga tccagtgcgc aaatctgatg ctcgggcttc aagagacggc
     1681 cgggctcaca accatcggag tttacccatg agcatcacgg ctccggaagg ttttgtcgcg
     1741 gccggctgtc atgccgggat caagcggcgg aagttcgaca tggcccttat tgcgaccgac
     1801 gatcggaagc ccgttccttg cgccgccgtg ttcacgcaga acaaatttgc ggcgccgccg
     1861 gtcgagtttg accgcgcaac gcttgcggca aatggcgggc gcgcggccgc gatcattatc
     1921 aattcgggaa atgcgaatgc cggcacgggg ctggcgggct acaagaacgc cgagcggatg
     1981 gccgcagcaa ctggtgaagc gctggcgatc gcgaactccg acgtgctcgt ctgttcgacg
     2041 ggaataatcg gaacgcccct tccgatggag ccgatccttt cgcacgttcc caagcttgcc
     2101 aagaagctat ccgtcgaggg aagtgatgat gccgcgcggg gcattctgac gactgatcac
     2161 aagaccaagc aggtcgtggt cgaagggtcg acgttcgttc tcggcggaat ggccaagggc
     2221 tgcgggatga tcgcgccgaa catggcaacc atgctcgcct ttcttacgac cgacgctgac
     2281 gtgccgacgt cggtgatgcg caaggcacta aagaccgcgg ccgatggaag cttcaatacg
     2341 ctcaacgtcg atggcgcaat gtcgaccaat gacacggcaa tccttcttgc atccggacga
     2401 cgaggaaagg ctgaccacga ggaattcgcg aacgcggttc tgacagcctg ccgggacttg
     2461 acgctgcaga tggcacgcga tgccgaagga atgacgcgca tggcgcatct gacggtgagt
     2521 ggcgcagcaa gcaacgagga cgcgcgcatc gcggcaaaag caatcgtcga gaacaacctc
     2581 gtcaagtgca gctggtatgg cggtgatccc tactggggac gcctgatggc agccgcaggt
     2641 tctacgcgcg tcgatctcga tgttgaaaaa tcctttgtcg cctatggcgg catcgccgtt
     2701 gcgagaggcg gggtcgggat tgagcatgat ggtcaggcgc tcgccgagca catgatgggc
     2761 gatgaaatag aaatcgaggt gcaccttggt catggccgcg gcaccgcgcg aatgatcggg
     2821 atcgatcttg gaccaggata catcaaggaa aatagcaaga cgtcatgaag cccgatcaca
     2881 atgaagcggt tctgctgagc cccgacaaga ccgcgcgagt gctcgtcgaa gccctgccgt
     2941 acattcggca gttcg
//
LOCUS       DASRBJ010000068         3285 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_260777,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000068 DASRBJ010000000
VERSION     DASRBJ010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3285
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260777"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1523
                     /locus_tag="VE968_01995"
     CDS             <1..1523
                     /locus_tag="VE968_01995"
                     /inference="COORDINATES: protein motif:HMM:NF015585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HZU50627.1"
                     /translation="DADLRLMKVPQQLANAPQAQFTKRPSWQVSTPESARDFSAACFF
                     LVRDLRKSEKIPVGAIDDSWGGTPIRAWMSEGAARSSGNEDAALMLDLYRRDERQAIL
                     RFGDEWARWWRSRTGDQADQVPWKTSDRLNWKPVPSLSFWDNWGPEWKAWIGSAWMRE
                     RVTLTSAEAAEGATLSLSAIDDMDQTFVNGSPVGGANDPANPRSYKIPAGLLRQGSNE
                     VLIFVRNVWGTGGLAGPADKFRLTFADGHSRPLATGWQYSRIADKVGDPPVPPWSNAS
                     GVSTIYNAMIKPFEALAIKGVAWYQGEADVGKAQYDRRLASLLANWRAQFRDSNLPFL
                     IVGLAGWGKPVSQPVESGWAALINEQRMAVERDPRTALASAIDLGEPNDIHPANKQEV
                     GRRLALAAHALVYRDAGTTGPMPVSAVRQGPDVVVTFTKTLQTLSGATANAVELCGNG
                     AGTCRYADARAAGNKLVISSDNRPIARVRYAWADYPIVNSYDADLLPIPVFELPVQ"
     gene            complement(1517..>3285)
                     /locus_tag="VE968_02000"
     CDS             complement(1517..>3285)
                     /locus_tag="VE968_02000"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019367717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="IlvD/Edd family dehydratase"
                     /protein_id="HZU50628.1"
                     /translation="PARPFRSREWFDAPGRPDMAALYLERYMNDAFTREELRSGKPII
                     GISQSGSDLVPCNRVHLKLVDRIKAGIRDAGGIPMEFPMHPIFENCRRPTAALDRNLA
                     YLGLVEILNGYPIDAVVLTTGCDKTTPASIMAAATVDIPAITLNGGPMLDGWHDGEMV
                     GSGTVIWRSRRLLGAGIIDEEEFIRRASDSAPSLGHCNTMGTASTMNSISEALGMSLP
                     GQAMIPAPYRERAHLAYETGKRIVAMAYEDLRPSKILTRSAFLNAIRLNAAIGGSTNA
                     QPHIVAMARHAGIELGKGDWMEHGYDIPLLVNMQPAGAYLSERFHRAGGIPAVIWELI
                     QADKFDGSALTCTGLSQAENVAGREAKDRDVIRPFSKPLKERAGFLVLTGNLFDFAIM
                     KTSVIGDEFRLRYLCRPAHEGVFEARAIVFDGSDDYHARINDPSLNIDKDCILVIRGS
                     GPIGWPGSAEVVNMQPPDALLQEGITSLPTLGDGRQSGTSDSPSILNASPESAAGGGL
                     AWLRTGDVIRIDLNEGRCDALVSEEEIARRRSDDGPSVPPSNTPWEELFREKTGQLST
                     GGVLEFAVKYRATSDKTPRHNH"
BASE COUNT          657 a          970 c         1012 g          646 t
ORIGIN      
        1 cggacgcgga cttgcgtctt atgaaggtgc cccaacaact tgcgaacgcg ccgcaagcac
       61 agtttacgaa gaggccgtcg tggcaggttt cgacgccgga aagtgcgcgc gacttttcgg
      121 ccgcatgttt ctttctcgtc cgagacctac gcaagagcga aaagattcca gtcggagcaa
      181 ttgatgatag ctggggcgga acgccgatcc gtgcatggat gagtgaaggc gctgcacggt
      241 cgagcggcaa tgaagatgcc gcgctgatgc tcgatctcta ccgccgtgac gagagacagg
      301 cgatccttcg cttcggcgat gaatgggcgc gctggtggcg ctcaaggacc ggcgatcaag
      361 cggatcaggt cccgtggaaa acaagtgacc gcttgaactg gaaaccggtc ccttcgctga
      421 gcttctggga caattggggt cctgaatgga aggcgtggat cggatcggcg tggatgcgcg
      481 aacgcgtcac tctaacgagc gccgaagccg cggagggcgc gacgctctca ctgagcgcga
      541 tcgacgacat ggaccagaca ttcgtcaacg gcagtcccgt cggaggcgca aatgatcccg
      601 caaacccgcg gagctacaag atcccggcag gattgttgcg gcaaggtagt aacgaagtcc
      661 tgatcttcgt tcgcaacgtc tggggaacgg gtggacttgc cggtcctgcg gacaagttcc
      721 gactgacgtt cgcggatggt cactcgaggc cgctcgccac cggttggcaa tattcgcgca
      781 tcgccgacaa ggtcggtgat cccccagtgc ccccgtggag caatgcgtcg ggcgtgtcga
      841 ccatttacaa cgcaatgatc aagccgttcg aagcgctcgc gatcaaaggc gtcgcttggt
      901 accaaggcga ggccgacgtc ggaaaagccc aatatgatcg gagacttgcg agcttgttgg
      961 cgaattggcg cgcgcagttc cgcgactcga acctgccttt tttgattgtc gggcttgccg
     1021 gctggggcaa accagtatcg cagccggtgg agagcggttg ggccgcattg atcaacgaac
     1081 agcgcatggc cgtcgaacgt gatccgcgca cggcgctcgc aagcgcgatc gaccttggag
     1141 aaccgaacga tattcaccca gccaacaaac aagaagtcgg ccggcggctt gctcttgcgg
     1201 cgcacgcgtt ggtgtatcgc gacgcaggaa caaccggacc aatgccagtc agcgccgtcc
     1261 gccaaggacc agacgtcgtc gtcaccttca ccaagacact ccagacgttg agcggcgcaa
     1321 cggctaatgc tgtggagctc tgcggcaacg gtgcgggaac atgccgttat gctgatgctc
     1381 gagcggcagg aaacaagctt gtcatcagct cggacaatcg tcccatagcg cgcgtgcgct
     1441 acgcctgggc ggactacccg atcgtaaatt cgtacgacgc cgacctgctc cccataccgg
     1501 tgtttgaact tcccgttcag tgattgtgcc ggggagtctt gtctgaggtt gcgcgatact
     1561 tgacggcaaa ctcgaggact cctcctgtcg acagctggcc cgtcttctcg cggaataatt
     1621 cttcccacgg agtgttgctt ggcgggacgc ttggtccgtc gtcgctccga cgacgtgcga
     1681 tctcctcctc gctcacgagc gcgtcacatc ttccctcatt gaggtcgatc cggatcacat
     1741 cgccggtgcg tagccaggct agtccaccgc ctgctgcgct ctcgggcgag gcattgagga
     1801 tagagggact gtccgacgtt cccgattgtc gcccatcgcc caaggtcgga aggctcgtga
     1861 tcccctcttg gagtagggca tcggggggtt gcatgttgac gacttcggcc gacccaggcc
     1921 agccgatcgg accggaaccg cgaatgacaa ggatgcaatc cttgtcgatg ttgagcgagg
     1981 gatcgtttat ccgcgcatgg tagtcgtccg aaccatcaaa aacgattgcg cgcgcttcga
     2041 acactccttc gtgggccggg cggcacaagt agcgcagccg gaattcgtcg ccgatcacgc
     2101 tcgttttcat gatcgcgaaa tcgaacaggt tgcccgttaa caccagaaag ccggcgcgct
     2161 ccttcagcgg tttcgagaat ggtcggatga cgtcgcggtc ctttgcctcc ctgcccgcga
     2221 cattctccgc ctgcgaaaga ccggtgcagg taagtgcgga gccgtcgaac ttgtccgcct
     2281 gaataagctc ccagattacc gcgggaatcc caccggcacg atggaaacgc tcgctgagat
     2341 acgcacccgc gggctgcatg ttgacgagga gcgggatgtc gtatccgtgc tccatccaat
     2401 cacccttgcc aagctcgata cccgcatgtc tcgccattgc gacaatgtgc ggttgagcat
     2461 ttgtcgagcc gccgatcgcc gcattgagcc ggattgcgtt caggaacgcc gagcgcgtga
     2521 ggatttttga tggccgaagg tcctcgtagg ccatcgcgac gatgcgcttt ccggtttcat
     2581 acgccaggtg cgcgcgctct cgatacggcg cgggaatcat agcctgtccg ggcagcgaca
     2641 tgcccagtgc ttcgctgata gagttcatgg tcgaagccgt gcccatcgtg ttgcaatggc
     2701 caagcgacgg cgccgaatcg cttgcgcggc gaatgaattc ctcttcgtcg attatccctg
     2761 caccgagcag ccgacgagaa cgccagatga ccgttcccga accaaccatt tcgccgtcgt
     2821 gccagccgtc aagcatcggg ccgccgttaa gggtgatcgc tggaatgtcg accgttgcag
     2881 ctgccatgat cgatgctggc gtcgtcttgt cacaaccggt ggtgagaacg actgcgtcga
     2941 tgggatagcc gtttaggatt tccaccagtc ccagataggc aagattgcgg tcgagcgccg
     3001 ctgttggccg gcggcaattc tcgaagatcg gatgcattgg gaattccatt ggaatcccgc
     3061 cggcatcacg tattcccgcc ttgatccgat cgaccagttt caagtgaacc cggttacatg
     3121 ggacgaggtc ggaaccggac tgcgaaatgc cgatgatcgg cttgccgcta cgcagctctt
     3181 ctcgcgtgaa tgcatcgttc atgtagcgct cgagatagag cgcggccatg tcaggccggc
     3241 cgggcgcgtc aaaccattca cgcgatcgaa acgggcgagc gggag
//
LOCUS       DASRBJ010000069         2137 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_670626,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000069 DASRBJ010000000
VERSION     DASRBJ010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_670626"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            111..1037
                     /locus_tag="VE968_02005"
     CDS             111..1037
                     /locus_tag="VE968_02005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017669415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HZU50629.1"
                     /translation="MPKFTVAALQIGSDYAGKAATLSSVLKFERDIAAAGARLVVLPE
                     ALLGGYPKGECFGTRLGYRMPEGREAFARYFENAVDLAGPEVAELAQLSKRTGASIVV
                     GVIERCGSSLFCTALFIDPDRGLVAKHRKLMPTGSERLIWAQGDGSTMPVVESAVGRL
                     GAAICWENHMPLFRTAMYAKGVEIWCAPTVDERDIWQSSMRHIAHEGRCFVVSCCQVQ
                     PSPAALGKKVDQWDSERPLISGGSMIVGPLGDVLAGPMYRDEGLLCAQIDTDDLIRAR
                     YDLDVVGHYARPDIFTLEVNEQSRPGTLFKGE"
     gene            complement(1157..>2137)
                     /locus_tag="VE968_02010"
     CDS             complement(1157..>2137)
                     /locus_tag="VE968_02010"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HZU50630.1"
                     /translation="VVGQSFAGHGFDGTLEPSTCVRIFTGAPVPNGADHVIIQELVDF
                     NRNFASIKEQPLGPPFIRKRASDFARRSEILAKGNILDARALVAAAGGDIGLVEVFRR
                     PRLRVVSTGDELVEPGRASETGGAVPDSVSLGIAALAEEYGAICIERLRFGDDLELIQ
                     SAATAALESADVVVLAGGASVGEKDFAKEMFVPLGLQLLFSKVSIKPGKPAWFGTVRD
                     RLIVGVPGNPTSALVTARLILAPLLALMQGRDIGHTLDWRLAPLAAPLPPSGDRETFH
                     RGFIRDGKVEILRSDDSSAQKLLAKASILVRQRPHSPALEKGMVVDVLDF"
BASE COUNT          458 a          609 c          648 g          422 t
ORIGIN      
        1 aacttcagaa cgtcggtacc tgaatcagga cacgactaat cggtacagcg ccacgcgtgt
       61 tgacgtcgcc cgatttcatt tgcttgtgct tcgacgctaa tagccgcccg atgccaaagt
      121 tcacggttgc agcacttcag atagggtctg actacgcggg aaaggctgcg actctgtcga
      181 gcgtgctcaa gttcgagcgc gacatagctg cggcaggagc aaggctcgtc gttttgccgg
      241 aagcgcttct cggcggctat ccaaaaggag aatgcttcgg cacgcgtctc ggctaccgaa
      301 tgcccgaagg gcgcgaggct ttcgctcgct acttcgaaaa tgctgtcgat cttgctggcc
      361 ccgaagttgc cgagcttgcg cagctaagta agcgcacggg tgcaagcatc gtggtgggcg
      421 tcattgagcg gtgcggatca tcgctcttct gtacggcatt gttcatcgat cctgatcgcg
      481 gcctcgtcgc gaagcatcga aagctcatgc cgacgggatc ggagcgcctg atctgggccc
      541 agggagacgg ctcaaccatg cccgtcgtgg agagcgcggt cggcaggctt ggcgccgcca
      601 tctgctggga aaaccacatg cctctgttca ggaccgcaat gtacgcgaaa ggagtggaga
      661 tctggtgcgc tccaacggtt gacgaaagag acatctggca aagctcaatg cgccatatcg
      721 cgcacgaggg acgttgtttc gtcgtcagtt gctgccaggt ccagccatca cccgcggcgc
      781 tcgggaagaa agttgatcaa tgggattccg aacggccgct cataagcggc ggcagcatga
      841 tcgttggacc acttggcgat gtgctcgcgg gaccaatgta tcgcgatgag ggattgttgt
      901 gcgcacaaat cgacacggac gacctcattc gcgctcgcta cgacttggac gttgtcgggc
      961 attatgcgag gccggacata ttcacgctcg aggtcaatga acaaagtcgg cctggcacat
     1021 tgttcaaagg cgagtgattg gcactcacga tctggtgccg tgagcgttct tgatgatgga
     1081 caataagagc gcctgcagaa agctcttgcg gggattttcg cacggcacgg cgttcactgc
     1141 tcgctcgcaa gacaatttag aaatcaagga cgtcgaccac cattcctttc tcaagcgccg
     1201 gtgaatgtgg cctctgccga acgagaatgc tcgctttcgc tagcagtttt tgagcgctgg
     1261 aatcgtcgga acgaagaatc tcgactttgc catcgcgaat gaatccccga tggaaggtct
     1321 cgcgatcgcc gctaggagga agcggtgccg cgagaggcgc cagcctccag tcgagtgtgt
     1381 gtccgatgtc gcgcccttgc attagtgcga ggagcggcgc gaggatgagc cgcgcggtca
     1441 cgagagcgga tgtgggatta ccaggaactc caacgattaa acggtcgcga acggtgccga
     1501 accaggccgg cttcccgggc ttgatcgaca cttttgaaaa gaggagctga agcccaagag
     1561 gaacgaacat ctccttggca aaatccttct ctccgaccga tgcaccgccc gcgagcacca
     1621 cgacgtcggc cgactcgagc gcggccgttg cggcggactg aatgagctcg agatcatcgc
     1681 caaagcgaag ccgctcgatg caaatcgctc catattcctc cgctaacgcg gcaatgccca
     1741 gcgagacgct gtcagggacc gcgccgcctg tctccgacgc tcttcccggt tcaaccagct
     1801 catcgccagt gctgacgacc cgcaacctcg gacggcggaa tacttcgact aatccgatgt
     1861 caccgccggc cgcagctacc agagcacgtg catcaaggat gtttcccttg gctaggattt
     1921 cgcttcggcg agcgaaatcc gaagcgcgtt ttcgaatgaa tggcggaccg agcggctgtt
     1981 ctttgatgga agcgaaattg cgattgaaat cgaccagctc ctggatgatg acgtgatccg
     2041 cgccattcgg gaccggcgcg ccagtgaaga tcctgacgca ggttgacggc tcgagggtgc
     2101 cgtcaaaacc gtgacccgca aaggattggc cgacgac
//
LOCUS       DASRBJ010000070         2622 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_412891,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000070 DASRBJ010000000
VERSION     DASRBJ010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2622
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_412891"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..471)
                     /gene="moaC"
                     /locus_tag="VE968_02015"
     CDS             complement(<1..471)
                     /gene="moaC"
                     /locus_tag="VE968_02015"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HZU50631.1"
                     /translation="MNDLTHVDDDGKLRMVDVSGKATTARRATATASLRCAATTLQQV
                     RSGTNPKGSVVAAAELAGIMAAKRTAELIPLCHPLPLTHVQLRIAVDEQLPGFSVSAE
                     VRTNGVTGVEMEALTAVSVACLTLFDMLKAVDRTMVIGGIQVTSKSGGRSGEWRM"
     gene            complement(468..1004)
                     /locus_tag="VE968_02020"
     CDS             complement(468..1004)
                     /locus_tag="VE968_02020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008070374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor synthesis domain-containing
                     protein"
                     /protein_id="HZU50632.1"
                     /translation="MRGIDEKLAFDPLRIAIMTISDTRTAATDASGALLVDRLTAAGH
                     VLAGKKIVADDIDAIRAEVAAYVEDPTVDLVISTGGTGFAPRDVTPEAIRPLLHREMD
                     GFPVVFHQASLGTVGISTLQSRAFAGQIGDTFIFCLPGSTGACRDGWDLVLGPMLDSR
                     YRPCSLASNIPRLRDRNE"
     gene            complement(1043..1285)
                     /locus_tag="VE968_02025"
     CDS             complement(1043..1285)
                     /locus_tag="VE968_02025"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HZU50633.1"
                     /translation="MKLRFYGRLAELIGSEIDVEQPARCTIAELRQRLIDEHHHARDV
                     LSNRRVRACVRDALVGDDHVIAEYETVEFLPPVSGG"
     gene            complement(1311..2513)
                     /gene="pcaF"
                     /locus_tag="VE968_02030"
     CDS             complement(1311..2513)
                     /gene="pcaF"
                     /locus_tag="VE968_02030"
                     /EC_number="2.3.1.174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016745186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0019619 - 3,4-dihydroxybenzoate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoadipyl-CoA thiolase"
                     /protein_id="HZU50634.1"
                     /translation="MTEAYICDYARTPIGRYAGALSPVRADDLAAIPIKALIDRNPAL
                     NWDELDDVILGCANQAGEDNRNLARMAGLLAGLPPSSGGVTLNRLCGSGLDAVAMAAR
                     AIRGGESDLIIAGGSESMSRAPFVMAKATSAFDRNAEMYDTTIGWRFVNPKMKSAYGD
                     DTMPSTGENVAQEFNVSRDDQDAFALRSQQRAAEAQANGRLAAEIVAVEIPQRKGDPV
                     IVNRDEHPRATNLEALSKLKPIVRPDGTVTAGNASGVNDGAAAIIVASEEAAKRNGLT
                     PRARVLGAAVAGVPPRIMGIGPAPASKKLMARMKLNIADFDVIELNEAFAAQALAVLR
                     QLGLADDAPHVNPNGGAIALGHPLGMSGARLALTATEELKRTGGKLALATMCIGVGQG
                     IALAIERV"
BASE COUNT          499 a          821 c          777 g          525 t
ORIGIN      
        1 cattcgccat tcgcccgatc gtccgccgga cttcgacgtc acttgaattc cgccgattac
       61 catcgtgcga tcgacggcct tcagcatgtc aaacagcgtt agacaggcaa cggaaaccgc
      121 ggtcagtgct tccatttcga cgccagtgac gccgttcgtg cgaacctccg cggaaaccga
      181 aaatccgggc agctgttcgt ccaccgcgat gcggagctgc acatgagtga gaggcagtgg
      241 atggcacagc ggaatgagtt ctgccgtgcg cttcgcggcc atgatccccg caagctctgc
      301 cgcagccaca accgaaccct tggggttggt tccagatcga acctgctgaa gagtcgtcgc
      361 ggcgcagcgc agacttgccg ttgccgtcgc tcggcgcgcc gttgtcgctt tgccggacac
      421 gtcgaccatt cgaagcttac cgtcatcgtc aacgtgggtg agatcgttca ttcgttccga
      481 tccctcaggc gcggaatatt cgatgcaagt gagcagggac ggtagcgact gtccagcatt
      541 gggccaagaa ccaggtccca cccatctcgg caggctccgg tagaacctgg aaggcagaag
      601 atgaaggtgt caccaatctg accggcgaaa gcgcgcgact ggagcgttga tatcccgacc
      661 gtacccaagc tcgcctggtg aaagaccacc ggaaaaccat ccatctcgcg gtgcagcaag
      721 ggcctgatcg cttccggcgt cacgtcgcgc ggtgcaaagc cggttcctcc ggtggatatg
      781 acaaggtcca cggttggatc ctcgacatag gcggcaacct ccgcacggat cgcgtcgata
      841 tcatcggcaa cgatcttctt tccagcaagt acatggccag ccgcggtcaa tcgatcgacg
      901 agtagtgccc ccgacgcatc cgtcgctgcg gttcgcgtgt ccgagatcgt catgattgcg
      961 atgcgcagcg gatcgaaggc aagcttttcg tctattccgc gcaatgaaga gctcccgatt
     1021 ttcgttgttt cggctccatg aatcatccgc ctgatacagg aggcaggaac tcgacagtct
     1081 catattccgc gataacgtgg tcatcgccaa cgagtgcgtc gcgcacgcac gctcgaacgc
     1141 gccgattgga gagcacgtct cgagcatgat gatgttcatc gatgagcctc tgacgcagtt
     1201 cggcgatcgt acagcgcgcc ggctgttcga catcaatttc gcttccgatc aattcggcga
     1261 gtctgccgta gaaacggagc ttcatgagcg tccctcatcc ttgtccatag ctagacacgt
     1321 tcgattgcca aggcgatgcc ctggccaacc ccgatgcaca tggtggcgag tgcaagcttg
     1381 ccgccggtcc gcttgagctc ctcggtcgcg gtgagtgcga gccgcgctcc agacatgccg
     1441 agcgggtggc caagtgcaat ggcgcccccg ttgggattta cgtgtggcgc atcatcggca
     1501 agcccaagct gacgaagtac ggcaagcgcc tgtgccgcga aggcttcgtt cagctcgatt
     1561 acgtcgaagt cggcgatatt gagcttcata cgcgccatta gtttcttcga cgcaggcgcg
     1621 gggccaatgc ccatgatcct aggaggaacg ccggcgacgg cggcaccgag gacgcgtgcc
     1681 cgtggtgtga ggccattgcg ttttgctgcc tcctctgacg caacaatgat tgccgcggca
     1741 ccatcgttga cgccggacgc attccccgcc gtgaccgtgc cgtcgggcct gacgatcggt
     1801 ttgagcttgg acaaggcttc aaggttcgtc gctcgcgggt gctcgtcgcg attgacgatg
     1861 acgggatcgc ccttccgctg cggaatctcg accgcgacga tttcggcggc aagacgcccg
     1921 ttcgcctgcg cctcggcggc cctttgctgg cttctcaacg caaacgcgtc ctgatcatca
     1981 cggctgacgt tgaactcctg tgcgacattc tcgccggtgc ttggcatcgt gtcatcgcca
     2041 taagccgact tcatcttggg attgacgaaa cgccacccga tcgtggtgtc gtacatctcg
     2101 gcgtttcgat cgaacgcgct ggtcgccttt gccatgacga acggggcgcg gctcatgctt
     2161 tcgcttccgc cggcgatgat gaggtcagac tcgccgccgc gaatcgcgcg cgcagccatc
     2221 gccacggcat caagcccaga cccgcagagc cggttcaggg tcactccgcc cgagctcggt
     2281 ggaagcccag cgaggagccc ggccatacgc gcaaggttgc gattatcctc acccgcctgg
     2341 ttggcgcagc cgaggatcac gtcgtcgagt tcgtcccagt tgagcgccgg atttcggtcg
     2401 atgagcgcct tgatcgggat cgccgcaaga tcatccgcgc gaaccggaga aagtgctcca
     2461 gcgtagcggc caatcggcgt tcgcgcgtaa tcacagatat atgcttcagt cactgctcgt
     2521 cctttgaatg cccgcgcggc actgatccag aagattgcgc cgggcaagca cgattgccgc
     2581 attgcacctt agcgctcgac gtggaacatc cgctaacgct ga
//
LOCUS       DASRBJ010000071         5028 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_59225,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000071 DASRBJ010000000
VERSION     DASRBJ010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5028
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59225"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..135
                     /locus_tag="VE968_02035"
     CDS             <1..135
                     /locus_tag="VE968_02035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HZU50635.1"
                     /translation="SFLIGTSRVMLGVHWPSDVIGGWSFGMLWVLLTLTPVERLVRAS
                     "
     gene            complement(132..1232)
                     /gene="ychF"
                     /locus_tag="VE968_02040"
     CDS             complement(132..1232)
                     /gene="ychF"
                     /locus_tag="VE968_02040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HZU50636.1"
                     /translation="MGFRCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGR
                     VAVPDERLDTIAKIAKSAQEVETQIEFVDIAGLVRGASKGEGLGNQFLANIREVDAIV
                     HVLRCFEGGDVTHVEGRVDPVADAETVETELMLADLESLERRLPNLLKKAQQGDKEAK
                     IEASVLAQALDLLRASKPARLTQPKDAEEAKALNRAQLLTAKPVLYVCNVEEQDAATG
                     NALSARVFEKAAAETARAVVVSAAIEAEIATLAPDERAAFLADLGLHETGLARVIRAG
                     YELLGLITFFTAGPKESRAWTVRKGAKAPEAAGAIHSDFERGFIRAETIAYEDYVKCG
                     GEAGARDAGKLRSEGKEYVVQDGDVMLFRFNV"
     gene            1535..1975
                     /locus_tag="VE968_02045"
     CDS             1535..1975
                     /locus_tag="VE968_02045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004212701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group III truncated hemoglobin"
                     /protein_id="HZU50637.1"
                     /translation="MRRERNLEENVELTTNPSSVLSDEHLSTLVDRFYAKVRDDVLIG
                     PVFNAAVGDWPQHLERLSAFWSSVMLTSGRYKGNPMAVHLKHREAIRAPMFDRWLELW
                     AQTARETLDERAAAGVIEKAGRIAESLQLGLFFRLDESRAPTEP"
     gene            complement(1972..2571)
                     /locus_tag="VE968_02050"
     CDS             complement(1972..2571)
                     /locus_tag="VE968_02050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02466 family protein"
                     /protein_id="HZU50638.1"
                     /translation="MTVRPLFVTTLYEADVPDLDLKEQLAHSVRALATEDDAGRRWSK
                     ANHYPGYTSYASLNDLPRRDPAFARLAKILARHAATFARECAFDLAAKPRLDSLWVNV
                     LRGTGHHAGHIHPRSIISGTFYVAVPKGSGAIRFEDPRLGLMMAAPLRRSDARDDLRS
                     FITVEPRPGLLLLWESWLRHEVVAGSSREERLSVSFNFS"
     gene            2791..>5028
                     /locus_tag="VE968_02055"
     CDS             2791..>5028
                     /locus_tag="VE968_02055"
                     /inference="COORDINATES: protein motif:HMM:NF027637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HZU50639.1"
                     /translation="MARPALALAPKSATINAERSLLDVKSDAKSGKIIATLPKPAQDG
                     VSLRVIYISQLETGLGSAPTQLDFGAASNSRILAFRRIGKKVIAEVENSKFITSNPAE
                     QQTTDHSFPSSALWMGSVEKELPDGSYEVDLSGFLARDDIGVARVIKNIGGGEFRLVP
                     ELSAADPSFVKAFPRNVELAARLTFRSDEPKDEMNNILPGDDTLSVIERHSLIALPPA
                     GYVERTDPYGYTIARQQVDFSKPLGAPIVTDLARRFRLEKTDPSAVRSPVKHPIIFYV
                     DSSMPPAIRDAVKDGVGWWAQAFDAAGFVDAFKVEVLPPGADPLDLRYNVVNWVNRAT
                     RGWSYGMPIDDPRTGEIIKGGVVLGSLRARQDMIIFQSLVGAGLTGTGDPNDPITATL
                     ARLRQLGAHEVGHALGLAHNFAASTQDRYSVMDYPGPRISLVNGAPSLRNAYGVGLGP
                     WDVWMINWLYGAKTDADATRAIAEARAAGLRFVADPDARPVSAAQPLGSLWDDGPDPV
                     AELRRMMDVRRVAVARFGRGALPPGEQLADLRRAFVPIWLLDRYQIEAAAKSLGGVDF
                     PYATNGEGMSAQVVPGTKQWAALYALLDTMSPTELTVPSRLLPLLSGAFGGDSDRQTD
                     IEIIPTAGGPVFDPLKASEVGAVQTLNSLLAPERLNRLEAQHSTDPAVPSTQQLLDLL
                     LGRTIGQSADDVGRRIATTTILALARVQRDRALSPTIAAELAGRLDRLADELERSRGP
                     QQDWAR"
BASE COUNT          970 a         1475 c         1528 g         1055 t
ORIGIN      
        1 tcattcctta tcggcaccag cagggtgatg cttggagttc actggccgag cgacgtcatt
       61 ggtggctggt cgttcggcat gttgtgggtg ttgcttactc taacgcctgt cgagcgattg
      121 gttcgcgctt cctagacgtt gaagcggaag agcatcacat ccccgtcctg aacgacatac
      181 tccttgcctt ccgatcggag cttgcccgcg tcgcgtgcac cggcttcgcc gccgcacttg
      241 acataatctt cataggcgat cgtctcagcg cggatgaaac ctcgctcgaa gtcgctgtgg
      301 attgcgcctg cggcctcagg ggctttcgcg ccctttcgaa cggtccatgc cctcgattcc
      361 ttgggaccgg ccgtgaagaa ggtgatgagt cccagtaatt cataaccggc tcggatcacg
      421 cgtgcgaggc cagtttcgtg aaggccgaga tcggcgagaa atgctgcgcg ctcgtcgggc
      481 gcaagagtag caatctccgc ctcgatcgcg gccgatacga ccactgctcg cgccgtctcg
      541 gctgcggcct tctcaaagac ccgcgccgaa agggcattac ccgtcgctgc atcctgttcc
      601 tcaacattgc agacgtagag gacgggcttt gccgttagca gttgcgcacg gttcagcgcc
      661 tttgcttcct cggcatcctt tggttgcgtg agacgggcgg gtttcgaagc gcgcaaaagg
      721 tcgagtgcct gcgccagcac cgacgcctcg atctttgctt ctttgtctcc ttgctgagcc
      781 ttcttgagga ggttgggcaa acgtcgctcg agactttcga ggtcggcgag cattaactcc
      841 gtttcaaccg tctcggcgtc ggcgacagga tccactcggc cttcgacgtg agtgacgtcg
      901 cctccttcga agcagcgaag gacatgcaca attgcgtcga cctcgcggat gtttgcaagg
      961 aactgattgc cgagcccttc gcctttagat gcgcctcgca cgaggccggc gatgtcaacg
     1021 aattcgattt gcgtctcaac ttcttgggca gatttcgcaa tcttcgcgat cgtgtcgagg
     1081 cgctcatccg gaacagccac ccggccgaca ttgggctcga tcgtgcagaa cgggtagttg
     1141 gccgcctgcg cagcagcggt ttcggtcaat gcgttgaaga gcgtcgactt gccaacgttc
     1201 ggcaggccaa caatgccgca gcggaagccc atggattctc cgttttgggg aaagcgcagg
     1261 cgcttagcgg ctgcattggc ggaatgaaag gccggttggc gatcgctcaa accctagtgt
     1321 gccgggccgt aatctatttg acgaaacctt aaaccgcatg agcggccggg ccgtgtcaca
     1381 ctggttgatc gttccaatca cgcttgagaa gatcgcccga gtgattcatt ggcgtaagga
     1441 tctgatcagt cttctctgag tcttgaaaat gacccaatat gaacgactta ggcggtgtat
     1501 cggagcgcat cgagtgaacg cctgcaatcg agtaatgcgg cgggaacgaa accttgagga
     1561 aaatgtggaa ttaacgacta atccttcatc agtgctgagc gatgagcacc tctcgacgct
     1621 ggttgatcgg ttctatgcca aggtccgcga cgatgtgctt attggtccgg tgttcaatgc
     1681 agccgtcggc gattggcctc agcaccttga acgcctgagc gccttctggt cttcggtgat
     1741 gctcacgagc gggcggtaca agggtaatcc catggccgtt catctcaagc accgcgaagc
     1801 gatccgtgcg ccgatgtttg atcgctggct ggagctctgg gcgcagacgg cacgcgagac
     1861 attggatgag cgagcagcag ctggcgtgat cgaaaaggcc ggtcgaatcg ccgaaagtct
     1921 gcagcttgga ttattcttca ggctggatga gtctcgagca ccaaccgagc cttaggaaaa
     1981 attgaacgag acgctgaggc gctcctcgcg tgacgaaccc gcaacaacct cgtggcgaag
     2041 ccagctctcc cacaacaaca acaatcctgg ccgaggctcg accgtgatga atgaccgaag
     2101 gtcgtcgcgc gcgtccgatc ggcgcagcgg ggcagccatc atcagcccga gcctcggatc
     2161 ttcgaaacgg attgcgcccg agcccttcgg gacggcgacg tagaatgtcc cagagatgat
     2221 gcttcgcgga tggatgtgtc ccgcatggtg tcctgtgcct ctgagaacat tgacccacag
     2281 gctgtcgagc cttggttttg ccgctagatc gaaggcacac tcacgcgcga aagtcgcggc
     2341 atggcgagca aggatcttcg cgagacgagc gaaagcggga tcccggcgcg gaaggtcatt
     2401 gagcgaagca tagctcgtat agcccggata gtggttcgcc tttgaccaac gcctccccgc
     2461 atcgtcctcg gtcgcaagcg cgcgaaccga atgagcgagt tgttccttga ggtcgagatc
     2521 cggcacgtcc gcttcgtaaa gggtggtcac gaacagaggc cggacggtca tgccacgctc
     2581 ttcgcgatcg tcgtcgacaa ctggtcacat ttgcttgagc tctgcagcga caatattgcc
     2641 atgagagacg ctttgagccc gtcgaccttg gcgacgcaag agcgtggaca gacgctgcgc
     2701 ggctgctacc gtccgaggat ctcgccggga gggttcttga tgcgccgttg gttgcttgcg
     2761 tcttcgattt cgttcgcact cgtgatgaca atggctcggc ccgcacttgc gctcgctccc
     2821 aagtctgcga ccatcaatgc ggaaaggtcg ctgcttgatg tcaaatcaga cgccaagagc
     2881 ggcaagatca tcgcgacttt gcccaaaccc gctcaggatg gcgtctcgct gcgcgttatc
     2941 tacatcagcc agctcgagac gggtctcggt tccgctccaa cccagctcga tttcggagca
     3001 gccagcaact cgcgcatcct cgcgtttcga cggatcggca agaaggtcat tgccgaggtt
     3061 gagaacagca agttcatcac gagcaatcca gccgaacagc agacaaccga tcacagcttt
     3121 ccaagctcgg cactttggat gggttcggtc gagaaagaac ttcccgatgg ctcgtacgag
     3181 gtcgatctgt caggattctt ggcgcgggat gatattggcg tcgcgcgggt aatcaagaac
     3241 atcggaggcg gcgaattcag gctggtgccg gagcttagcg ccgccgaccc ttcattcgtg
     3301 aaagcatttc caagaaatgt ggagcttgct gcccgactga catttcgatc cgacgaacca
     3361 aaggacgaaa tgaacaacat cctgccaggc gatgacacgc tgagcgtcat cgagcggcat
     3421 tcgctgattg ctcttccgcc tgctggctac gtcgagcgca ccgatcctta tggatacacg
     3481 atcgcaagac agcaggttga tttttccaag cctcttggag ctcccatcgt aaccgatctt
     3541 gcaagacgct tccgccttga aaagaccgat ccgagcgcgg tccgctcacc ggtcaaacac
     3601 ccgatcattt tctacgttga ttcctcgatg ccgccggcaa tccgggacgc tgtgaaggac
     3661 ggcgttggct ggtgggctca ggcgttcgat gccgcgggtt tcgtggacgc gttcaaggtc
     3721 gaagtacttc cgccgggcgc cgatccgctc gaccttcgct acaatgtcgt gaactgggtt
     3781 aaccgtgcca cgcgtggctg gtcgtacggg atgccgatcg atgatccaag gacgggcgag
     3841 atcatcaagg gaggcgtcgt tctcggatca cttcgcgcgc gccaggacat gatcattttc
     3901 cagtcgctgg tcggtgccgg tctgactgga acaggcgatc cgaacgatcc gatcaccgcg
     3961 acgcttgccc ggttgcggca gcttggtgcc cacgaagttg ggcacgctct tgggcttgcg
     4021 cacaatttcg ctgcgagcac gcaggaccgc tattccgtca tggactatcc cggtccacga
     4081 atctcgctcg tcaatggcgc gccgtctcta aggaacgcct atggggtcgg tctcgggccg
     4141 tgggacgtct ggatgatcaa ctggctctat ggcgcgaaga ccgatgctga cgcgacccgt
     4201 gcgatcgctg aagcgcgcgc cgctggtctt cgcttcgttg ccgaccctga tgcacgacca
     4261 gtgtccgctg cccagccgct cggatctttg tgggacgatg gcccggaccc tgtcgccgag
     4321 ctgcgtcgaa tgatggacgt gcgccgggtc gcggttgcaa ggttcgggag gggagcgctc
     4381 ccgccgggcg aacaactggc ggacttgcgc cgtgccttcg taccgatctg gctgcttgat
     4441 cgatatcaga tcgaggccgc ggcgaagtct ctcggaggag tcgattttcc ctacgcgact
     4501 aatggggagg gaatgagtgc ccaagtcgtt ccagggacca agcaatgggc tgcgctttac
     4561 gcgcttctcg atacgatgag cccgacagaa ttgacggtac cgtcgcgcct tctgccgctt
     4621 ctctctgggg cgtttggagg cgactccgac cggcagaccg atatcgagat catccccacc
     4681 gccggcggtc cagtgttcga cccgctgaaa gcaagtgaag tcggcgcggt gcagacgttg
     4741 aattcacttc ttgcgccaga gcggctcaat cgcctcgaag cgcagcattc gaccgatccg
     4801 gccgtgccgt cgacccagca gctgcttgat ctcctgcttg gccgaacgat tggccagtcg
     4861 gctgatgatg tcggccgccg gattgcaacg acgacgattc tcgctttggc ccgagtgcag
     4921 cgcgatcgag ccttgtcgcc aacgatagcg gctgaactcg ccgggaggct cgaccggctg
     4981 gctgacgagc tcgagcgttc gcgcgggcca cagcaggact gggcgagg
//
LOCUS       DASRBJ010000072         5678 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_721205,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000072 DASRBJ010000000
VERSION     DASRBJ010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5678
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_721205"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..838
                     /locus_tag="VE968_02060"
     CDS             <1..838
                     /locus_tag="VE968_02060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008599636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="erythromycin esterase family protein"
                     /protein_id="HZU50640.1"
                     /translation="GRLAHRRYGCLEPWAEEPQLYGRNALIEGYARCEVGVVAMLKDL
                     LKHQLDCYSPECDEWLDAAANARLVKDAEVYYRVMYHGSAESWNLRDQHMFETLTMIL
                     EARPQSKAIVWAHNSHIGNAAFTDMGMARGELNIGQLCKEKWDARARLIGLGTHTGTV
                     AAANDWDEPMEIKTVRPSLPESYERASHDSGMARFLLDLREGEVGRDIQQALSLPRLE
                     RFIGVIYRPETERWSHYSEAILPKQFDCWLWFDETHAVTPLPGEKRPGDHVLEDTYPF
                     GL"
     gene            complement(820..2514)
                     /locus_tag="VE968_02065"
     CDS             complement(820..2514)
                     /locus_tag="VE968_02065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HZU50641.1"
                     /translation="MSLRTGGQILVDQLRINGCDRIFTVPGESFLAVLDALHDASDIE
                     TIVCRQEGGVAYMADADGKMTGRPGIAFVTRGPGATNASAGVHVAYQDSTPMILFIGD
                     VARGDRDREGFQEVDLPAFFGPLAKWAARIEDARRIPEYVARAYRIATAGRPGPVVLA
                     LPEDMLRELVEVEDRPCVPPLAEAADPGAVEALIELLKEAASPVAIVGGADWSPRASH
                     HFANFAYRYGIPVAAAFRRQDAICNTCQVYAGQLGYGPNPKLQQRIRDADLILAVGAR
                     LGEATTDGYTLITPEHSGQILVHVHPDPNELGRVFVTDLPICADMGEFAEMLDGWVDP
                     ELVRFSCGDEAHSQWLDWSEPKPRDNVRLDLGLCVAAMRERLPGNTILCNGAGNFSGW
                     WHRYWRYGQMPSQLAPTSGTMGYGLPAAVAAALRFKDRPVVCVAGDGDFLMNGQELAT
                     AAQYGANLLIVLVDNSAYGTIRMHQEREYPERVSATELKNPDFAALARAFGGWAESVE
                     RTEEFAPALDRALEQTGIRLLHCKTDVEEISNATTITNLRARAKSSARASDQSPNG"
     gene            complement(2690..4111)
                     /locus_tag="VE968_02070"
     CDS             complement(2690..4111)
                     /locus_tag="VE968_02070"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HZU50642.1"
                     /translation="MGYETDLKLFIDGAWKSADAGHTVVNPVDAKPIGEVPFATKADL
                     EEALAASERAWPSWKALDVEKRAAILHKVGKLLRERAEHIATILTQEQGKILPEAKAE
                     VFASAQLFDWYAEDAKRDYGRTLVRPAGQLSRVIRQPVGPTATFTPWNFPVYLLAKKV
                     APALAAGCTTISRPPEETPGCTTELFRALADAGIPAGVAQLVHGDADLISRTLIASRT
                     VRKVSFTGSTAVGKHLMRLCADSMTRVTMELGGHAPVLIFDDCDLEKTLDMVVPQKFR
                     NAGQVCVSPTRFYVQRGIYQAFVDGFAKRTAGVKVGNGLEEGTRMGPLANARRPEAIG
                     RLVEDAKAKGARVLAGGERGESGFFFQPTLLADVPNEAEIMSTEPFGPVAVSRPFDTF
                     DEVIAEANRLPYGLAAFAFTENGRRANLVGEALEAGMVGINTFNVSGADTPFGGVKDS
                     GFGSEGGKEGLESYQVVKAIHQA"
     gene            4350..4652
                     /locus_tag="VE968_02075"
     CDS             4350..4652
                     /locus_tag="VE968_02075"
                     /inference="COORDINATES: protein motif:HMM:NF014132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HZU50643.1"
                     /translation="MTKQELVERMRQGQAWIPGKRVKIDFGGSEGAIMLDGAAQQVTE
                     EDGAADTTIRVGWDDWQQLAAGQLDGMTAFMMGKLKVEGDMSNAMQLQGIFAKLKG"
     gene            4878..5585
                     /locus_tag="VE968_02080"
     CDS             4878..5585
                     /locus_tag="VE968_02080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018251084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit A"
                     /protein_id="HZU50644.1"
                     /translation="MQKIYPNADAALDGVLFDAMTIAAGGFGLCGIPERLIDAIVASG
                     VKELVIASNNAGIDNEGLGKLLRTRQVKKMISSYVGENKEFERQFLAGELEVEFTPQG
                     TLAERMRAGGAGIPGFYTKTGYGTEVAKGKEVKEFEGEQYILERGIRADLSIIKGWKA
                     DETGNLVFRKTTRNFNLPAATCGKICVAEVEEIVPVGSLDADCIHLPSIYVNRLIKGS
                     PYDKKIEFRTVRQREAA"
     gene            5585..>5678
                     /locus_tag="VE968_02085"
     CDS             5585..>5678
                     /locus_tag="VE968_02085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009822996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-CoA--3-ketoacid-CoA transferase"
                     /protein_id="HZU50645.1"
                     /translation="MATSVEAKGWTRDQMAARAARELQDGFYVNL"
BASE COUNT         1140 a         1692 c         1788 g         1058 t
ORIGIN      
        1 cgggcggctt gcgcatcggc gctatggttg tctcgagccg tgggccgaag agccgcagct
       61 ctatggccgc aacgcgctga tcgagggcta tgcccgctgc gaggtcggcg tcgtcgccat
      121 gctcaaggat cttcttaagc atcagctcga ttgttattcg ccggagtgcg acgagtggct
      181 cgacgctgcc gccaacgctc ggctcgtcaa ggatgccgag gtctactacc gcgtcatgta
      241 ccacgggtcg gccgagagct ggaacctgcg cgaccagcac atgttcgaaa cattgacgat
      301 gatcctcgaa gcgaggccgc agtcaaaggc gatcgtttgg gctcacaaca gccatatcgg
      361 gaatgcggct ttcacggaca tgggaatggc gcgcggcgag ctcaatatcg gacagttgtg
      421 caaggaaaaa tgggatgctc gagcgcggct aatcggcctt ggaacacata cagggacggt
      481 tgcggctgcc aacgattggg atgagccgat ggagatcaag actgttcgcc cctcgctccc
      541 ggaaagctac gagcgtgcaa gccacgatag cggaatggcg cgctttctgc tcgaccttcg
      601 cgaaggcgaa gtcgggcgcg acatccagca ggcgctctcg ctgccccggc tcgagcgctt
      661 tatcggcgtg atctatcgtc cggaaacgga gcgctggagc cactatagcg aggcaatatt
      721 gccaaagcag ttcgactgct ggctctggtt cgacgaaacg catgctgtga cgccgctccc
      781 gggcgagaag cgtccgggcg accacgtgct cgaggatacc tatccgttcg ggctctgatc
      841 ggatgcgcgt gccgaactct tcgcccgggc acgaagattg gtgattgtcg tcgcgttgct
      901 gatttcctca acatcggtct tgcagtgaag caggcgaatg ccggtctgct cgagagcacg
      961 gtcgagcgcg ggggcgaact cctcggttct ttcgacgctc tccgcccagc cgccaaaggc
     1021 gcgtgcaagc gccgcaaagt cgggattctt gagctcggtc gcgctgacac gctccggata
     1081 ttcgcgttcc tggtgcatcc ggatcgttcc gtaagcgctg ttatcgacaa ggacgatgag
     1141 gaggttcgct ccatattgag cggccgtcgc aagttcttgc ccattcataa ggaagtcgcc
     1201 gtcacccgcg acgcacacga ctggccggtc cttgaagcga agcgctgccg caacggcggc
     1261 gggcaagcca tagcccatcg ttccactggt cggtgcgagc tgggacggca tttgaccgta
     1321 acgccagtag cgatgccacc agcccgagaa attgccagct ccgttgcaaa ggatcgtgtt
     1381 gcccggcagg cgttcgcgca ttgccgcgac gcacaagcca aggtccaacc gcacgttgtc
     1441 cctgggcttg ggttccgacc agtcaagcca ttgcgaatgt gcttcatcgc cgcacgagaa
     1501 acgaaccagc tcgggatcga cccagccgtc cagcatctcg gcaaactctc ccatgtcggc
     1561 gcagattggc agatccgtca cgaatacgcg gccaagctcg ttggggtcag ggtggacgtg
     1621 gacaaggatc tggccggagt gctcgggagt aatgagggtg tatccgtcgg tcgtcgcctc
     1681 gccgagccga gcgccaaccg caaggatgag gtcggcatcg cggatccgct gctggagttt
     1741 tggattgggc ccgtagccaa gttgcccggc atagacctgg caggtgttgc agattgcatc
     1801 ctgacggcga aaagccgccg caaccggaat gccgtatcga tacgcgaaat tggcgaaatg
     1861 atgcgaggcg cgcgggctcc aatccgcgcc gccgacaatt gcaacgggcg acgcggcttc
     1921 cttcagaagc tcgatcagcg cttcgacggc tccgggatcc gccgcttccg cgagcggcgg
     1981 gacgcatggc cggtcctcga cttcaaccaa ctcgcgaagc atgtcctcgg gaagagcaag
     2041 cacaactggc cccggccgcc cggcggttgc aatccggtag gcgcgcgcga catattccgg
     2101 gatccggcga gcgtcctcga tccttgctgc ccacttcgcg agtgggccaa aaaaggcagg
     2161 cagatcaact tcctggaatc cttcgcggtc acgatcgcca cgcgcgacgt cgccaatgaa
     2221 taggatcatt ggcgttgaat cctggtatgc aacgtggaca ccggcgcttg cattggttgc
     2281 acctggacct ctggtcacaa aggcgattcc ggggcgtccg gtcattttcc cgtcggcgtc
     2341 ggccatgtaa gcgacaccgc cctcctgccg gcagacgatc gtctcgatgt cggaagcgtc
     2401 gtggagcgca tcgagaacgg caaggaagct ctccccgggc accgtgaaga tgcggtcgca
     2461 gccgttgatg cgaagttgat cgacgagaat ttgtccgccc gttcgtaagc tcatgctcgg
     2521 cctctagccg gctcgatgcg acacgtcatg tgccccgacg cgcgaggtac tggaaaagct
     2581 tccgcgacga gcgctcggcg agcgaagccc accgttgctg cgattctctg cgagctcaac
     2641 tcgctcgagg atcgcgatca acggcgcgcg aagcgttgtt caagatggct caagcctggt
     2701 ggatcgcctt tacgacctgg tagctctcga gcccttcctt gcctccctcg gagccaaagc
     2761 ccgaatcctt gacgccgccg aacggcgtgt cggcaccgga gacattgaac gtattgatcc
     2821 cgaccatgcc tgcctccaac gcttcgccga cgagatttgc gcgtcgtcca ttctcggtga
     2881 aagcgaatgc ggcaaggccg taggggagac gattggcctc ggcgatcact tcatcaaagg
     2941 tgtcgaaagg ccgagacacg gcaaccggac caaacggctc ggtgctcatg atttcggcct
     3001 catttggaac atcggcgaga agggttggct gaaagaagaa gccggactca ccgcgttctc
     3061 cacccgcaag aactcgcgca cctttggcct tggcatcttc aacaaggcga ccgattgcct
     3121 cggggcgccg tgcattggcg agcgggccca tgcgcgtacc ttcttcaagg ccgttgccaa
     3181 ccttcactcc ggcagtgcgc ttcgcaaatc cgtcgacaaa cgcctggtag atccctcgct
     3241 gcacgtaaaa gcgcgttggc gagacgcaga cctgcccggc attccggaac ttttgtggaa
     3301 cgaccatgtc gagcgttttt tcaaggtcgc aatcgtcgaa gatcagcacc ggcgcgtgac
     3361 cgccgagttc catcgtgacg cgggtcatgc tgtcggcaca aagtcgcatg aggtgcttgc
     3421 cgaccgccgt cgatccagtg aagctcacct tgcggaccgt ccggctcgcg atgagggtcc
     3481 ggctgataag gtccgcatcg ccatggacga gctgcgcgac gcccgcgggt atgccggcgt
     3541 ccgcaagcgc gcggaagagc tccgtcgtgc agcccggcgt ttcctcgggt ggtcgggaga
     3601 ttgtcgtgca tcccgcggca agcgctggag caaccttctt ggcaagcaaa tagactggga
     3661 aattccaagg agtgaaggtg gcagtcggtc caaccggctg ccggatcact cggctgagct
     3721 gtcctgccgg gcgcacgagc gttcgtccat agtcgcgctt tgcgtcctcg gcgtaccagt
     3781 cgaacaattg cgccgaagcg aacacttcgg ccttggcctc gggcaagatc ttgccctgct
     3841 cctgagtcag gatcgttgca atatgctccg cgcgttcgcg caggagttta ccgaccttgt
     3901 gcaggattgc cgctcgcttt tcgacgtcga gggccttcca ggaaggccag gcacgttcgg
     3961 atgcggcgag cgcttcctca agatccgcct tggtcgcgaa cggaacttcg ccgatcggct
     4021 tggcatcaac ggggttgacg acggtgtggc cggcgtcagc cgatttccac gcgccatcga
     4081 tgaagagttt gaggtcggtt tcatatccca tacgcggcga gataggtgcg caccaagcgg
     4141 cacacaacgg catccttcat tacgcaagcg cgaagaggct ctcgacgggc gtttcaaaga
     4201 ggcggttttc gatctgagtg ctgatgatgc gagctcgccg cggtcgcgaa ggcgatcgtc
     4261 cgcgcgacca accaacgcgt cgcccaaccc gcttgccttg aaggctcgaa gcgaggccgc
     4321 taccgctact gacaaaggag aaaacaagaa tgaccaagca ggagctcgtc gagcggatgc
     4381 ggcagggaca ggcctggatt cccggcaaac gcgtgaagat tgatttcggt ggaagcgagg
     4441 gagccatcat gctcgatggc gctgctcagc aggtaaccga agaggacggg gccgccgaca
     4501 cgacgatccg cgtcggatgg gacgactggc aacagctcgc cgcgggtcag cttgacggca
     4561 tgacggcgtt catgatgggc aagctcaagg tcgagggaga catgagcaac gcgatgcaat
     4621 tgcaagggat tttcgcaaag ctcaagggct gaacgccctg tcttgaggca ttcatgaacg
     4681 ggaaacgggt gccagcttcc ggtcgttcaa cgatgccgaa gggcgctatt ttgccaccaa
     4741 cgctctcaag acagctttcc cggctctagc gcgcgcttga ccgtttctgg cgcgcttcta
     4801 tggcagtcgc cgactgttgc tttcgcgaag ttgaaagccg gttcaacttt gcttagctgg
     4861 ctgcaaggag cagcgaagtg cagaaaatct atcccaatgc cgatgccgcg ctcgacggcg
     4921 tgctgttcga cgcaatgacc atcgccgcgg gggggtttgg cctctgcggg ataccggaac
     4981 gcttgattga cgcgatcgtc gcgagcggcg tcaaggagct tgtaattgcg tccaacaacg
     5041 ccggcatcga caacgagggc ctcgggaagc tccttaggac ccggcaggtg aagaaaatga
     5101 tctcgtccta cgtcggtgag aacaaggagt tcgaacgcca attcctcgcc ggcgaactcg
     5161 aggtcgaatt cacgccgcag ggaacgcttg cggagcgcat gcgcgccgga ggtgccggga
     5221 ttcccggatt ctacaccaag actggttacg gaacggaggt tgcgaaaggc aaggaagtga
     5281 aggagttcga gggggaacaa tatatcctcg aacgcggaat tcgtgccgac ctcagcatca
     5341 ttaaaggctg gaaggcggac gagacgggca atctcgtctt ccgcaagacg acgcgcaatt
     5401 tcaacctgcc cgctgcgacg tgcggcaaaa tctgcgttgc cgaagtcgag gagatcgttc
     5461 cagtcggctc gctcgacgcc gactgcattc atctcccatc catctacgtc aaccggctga
     5521 tcaagggctc gccttacgac aagaagatcg agttccggac cgttcggcag cgagaggcgg
     5581 cgtgatggcg acgagtgttg aagcaaaggg ctggacccgc gaccaaatgg cggctcgcgc
     5641 ggcccgcgag ctccaggacg ggttctacgt caatttag
//
LOCUS       DASRBJ010000073         2387 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_7520,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000073 DASRBJ010000000
VERSION     DASRBJ010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2387
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7520"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            113..337
                     /locus_tag="VE968_02090"
     CDS             113..337
                     /locus_tag="VE968_02090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009822860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-finger domain-containing protein"
                     /protein_id="HZU50646.1"
                     /translation="MRIATSRDMPQQPPPEVIRVSTLQVACDGSGEVAPVLGHPRVYL
                     RIEEDTGFVECGYCDRRFVLQGGPADNVST"
     gene            334..1755
                     /gene="tldD"
                     /locus_tag="VE968_02095"
     CDS             334..1755
                     /gene="tldD"
                     /locus_tag="VE968_02095"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HZU50647.1"
                     /translation="MTAPDPRRFLYRNFDPDAARRLAARHLRSHDDGELYLQYSSSEA
                     FGFDDGRLKTADYQTSSGFGLRGISGETTAFAHANEISEAAIERAAATLQLLDTSKRT
                     PAAPPARTNQAMYRTDDPLSLMAFGDKVSLCQRIDEAARSRDPRVAQVSVSLSASWSV
                     IDIIRADGFVASDVRPLVRLGVQIVAEQNGRRETGFHGLGGRYLYDNLFHEAQWSRAI
                     DIALAQALTNLESVAAPAGEMPVVLGPGWPGVLLHEAVGHGLEGDFNRKGTSAFSGRL
                     GERVAAPGVTVIDEGAIENRRGSLTIDDEGTPTGRTCLIEDGILKGYLQDRLNARLMG
                     MEPTGNGRRESFAHAPMPRMTNTFMLAGKDHPRELLERVKDGIYAKNFGGGQVDITSG
                     KFVFSCTEAYRIRNGRVAEPIKGATLIGDGPSVLTRVKGIGNDLALDEGVGVCGKGGQ
                     SVPAGVGQPTLLIDGLTVGGTAA"
     gene            complement(1830..2237)
                     /locus_tag="VE968_02100"
     CDS             complement(1830..2237)
                     /locus_tag="VE968_02100"
                     /inference="COORDINATES: protein motif:HMM:TIGR01244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01244 family sulfur transferase"
                     /protein_id="HZU50648.1"
                     /translation="MIRQLDENVLVSGQLAPHEIAGLAEQGITVLVNNRPDCEEPGQP
                     LASEIEIAAAASGISYHFVPIVRGIGPADVKIMQQALAEARAGKLLAFCRSGSRSALA
                     IALAKRAEGESVAEIERSLINAGFDAGPIAHLL"
BASE COUNT          491 a          719 c          729 g          448 t
ORIGIN      
        1 tcccgcgtag gtctttgaga ggttcacgat ttcgatggca tgatcgttca tttcgtcggt
       61 ccgaatagga gcggctttcc aaagcgacaa gccgccgagg ttgaaccgac gcatgcgcat
      121 tgctacctcg cgcgacatgc cacagcagcc accgccggaa gtaatccgcg tctcgacgct
      181 tcaagtcgca tgcgacggat cgggtgaagt cgcaccagtg ctcggtcacc cgcgagttta
      241 cctgcggatc gaagaggaca ccggctttgt cgaatgcggc tattgcgacc gccgctttgt
      301 ccttcaaggg ggaccggctg acaacgtttc gacatgaccg cgcctgatcc acgccgattc
      361 ttgtatcgga acttcgaccc cgacgctgcg agacggcttg cggcacgtca tcttcgctcg
      421 cacgacgatg gcgaattata cctgcagtac agctcgagcg aagcattcgg gttcgacgac
      481 gggcggttga agaccgcaga ctatcagacg tcgtccggct ttgggcttcg cggcatctct
      541 ggtgaaacca ccgctttcgc gcacgcaaat gaaatcagcg aggccgctat cgagcgcgcc
      601 gcagcgaccc tccagctgct tgacacgtcg aagcgcacac cggccgcccc gccagcgcgg
      661 accaaccagg cgatgtatcg cactgacgat ccgctcagcc tcatggcctt cggggacaag
      721 gtctcgcttt gccagcgcat cgacgaagcc gcgcgctcgc gcgatccacg cgtcgcccaa
      781 gtaagcgttt cgctatcggc gagctggagc gtcatcgaca tcattcgtgc cgacggattc
      841 gtcgcttcgg atgtgcggcc gctggtgcgg cttggagtcc agatcgtcgc ggagcagaat
      901 gggcggcgcg aaacgggctt tcacggcctt ggtggccgct atctttacga caatttattt
      961 catgaagcgc aatggagccg cgcaatcgac atcgcgcttg cgcaggccct aacgaatctg
     1021 gagtcggtcg ctgcgccagc cggagaaatg ccggttgtgc ttgggccggg ctggcctggc
     1081 gtgctgctcc atgaggcggt cgggcacggc ctcgaaggcg acttcaaccg caagggcacg
     1141 tcggcattct cggggcggct cggcgaaaga gtagcagcgc ctggtgtgac cgtgatcgac
     1201 gagggcgcca tcgaaaatcg acgcgggtcg ctcacgatcg acgacgaggg gacgccgacc
     1261 ggtcgcactt gcctgatcga agatggaatt ctcaaaggat atcttcagga ccgactgaat
     1321 gcgcgcctca tgggaatgga gcccaccggc aacggcaggc gagagagttt cgcgcacgcc
     1381 cccatgccgc ggatgacgaa caccttcatg ctcgccggca aggatcatcc aagagagttg
     1441 ctggaaaggg tcaaggatgg catttacgcc aagaatttcg gtggcggcca agtcgacata
     1501 acgagcggaa aattcgtctt ctcatgcacc gaagcctatc gaatccgtaa cggcagggtt
     1561 gctgaaccga tcaagggcgc gacgctgatc ggggatggcc cttcggtgct gacccgcgtc
     1621 aaaggcattg gcaacgatct tgcgctcgac gaaggcgttg gagtctgcgg caagggtggg
     1681 caaagcgtac ccgctggagt tggacaaccc acgctgctga tcgatggcct gaccgtcggc
     1741 ggcacagcag cctgaacgac aactcgcgca ccactgggat gcgctagcat tcgactttgc
     1801 tccgtcgggt aagcgatcgg tccagaaggt tagagcagat gcgcgattgg gccggcgtca
     1861 aatcccgcat tgatcaacga acgctcgatt tccgcgaccg actcaccttc tgcgcgcttg
     1921 gcaagggcaa ttgcgagagc ggaacgcgag cccgaacggc agaaggcgag tagcttcccc
     1981 gctcgagctt cagccaatgc ctgctgcatg atcttgacgt cagccggtcc gatcccgcgc
     2041 acaatgggaa cgaaatgata ggaaatgccc gacgctgctg ccgcaatttc aatctcactt
     2101 gcaagcggct gccccggctc ttcgcaatcc ggccggttgt tcacaagcac agtgatcccc
     2161 tgttcggcca gaccggcgat ttcatgcgga gcgagttgac cgctcaccaa cacattttcg
     2221 tcaagctgac ggatcacgcg aggatccttt cactttggag ggctcgccgt cgcgtcggaa
     2281 ccacttgcaa gtccataaaa gcggagcatt gggccaacat cgggatcgtg cccagtgaat
     2341 gcgcggtaca tctcgccata gtcttccgta ttgccgcggg aaagaat
//
LOCUS       DASRBJ010000074         4933 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_671644,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000074 DASRBJ010000000
VERSION     DASRBJ010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4933
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_671644"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            221..658
                     /locus_tag="VE968_02105"
     CDS             221..658
                     /locus_tag="VE968_02105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010185091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HZU50649.1"
                     /translation="MITQKTRYALRSLLFLAEEQGGAPVQLSRIAETQRVPPKYLELI
                     MLDLKKAGLVKSARGPKGGYQLARSSDQISFGEIVRTMEGPIALVSCASVNFYAPCGD
                     CQDEATCAIRRAFAILRDQSTAVLDSISLAQGAGWEERLNTAV"
     gene            754..993
                     /locus_tag="VE968_02110"
     CDS             754..993
                     /locus_tag="VE968_02110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50650.1"
                     /translation="MTCYRICLINSHFKSADEAQYTSLDAARSAAIVTATNIVSESIS
                     EGEPTSAVEIQIFADDELVSRQVVTLSVAEFTTDQ"
     gene            1082..1801
                     /locus_tag="VE968_02115"
     CDS             1082..1801
                     /locus_tag="VE968_02115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HZU50651.1"
                     /translation="MIEAHLKKLRARDSISDEEEQAVRGLVESVIEVKPDRTVVRHGE
                     ELNQSMLLLSGWLARAKDLPSGQRQIAELHVAGDFADLHGFSLKYLDHDVITITRARI
                     GLVPHERLKELTERFPHLTRIYWALTNIDAAIQREWTLSLGRRSAIARMAHLLCELNV
                     RLGLVDLTQGNSFDFPLTQVEFGECLGLTSVHVNRTLQELRRRGLIELQSRRVTIFDL
                     EALKGVAEFDNAYLYLQQRPR"
     gene            1941..2621
                     /locus_tag="VE968_02120"
     CDS             1941..2621
                     /locus_tag="VE968_02120"
                     /inference="COORDINATES: protein motif:HMM:NF021492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZU50652.1"
                     /translation="MSETFLREVDENLRRDQLRDFFKENGSWLIAAVVVFLAASGAII
                     WWKQHQVERNEAQVERLAQIYKDIGAGDMAQAPQQLEQLSNSGSKAVRASALFARAAL
                     ALQQGDTKLATATYQSIANDDGLPKPYRDAALVRETALQFDQLRPDEIISRLVPLAKP
                     GEPWFGSAGEMTALAMMKQGNNQQAGQLFEALTRDQGVPETIRARAAQVASSLGMDVT
                     AAPQAQAR"
     gene            2629..3963
                     /locus_tag="VE968_02125"
     CDS             2629..3963
                     /locus_tag="VE968_02125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HZU50653.1"
                     /translation="MTRSKYKRVAVVLAMALAASGCGIFKKGKAAGTPVLGNRIAVLT
                     GEGDVTVDPAMTSMPMSLPGQSVNSDWVQSGGNQTHSMGQLALGDRPVRAWTVQAGRG
                     NSLTARLASPPIVAGGRVFTMDTLGVVRAFDARTGAQVWASPTPTEKGGSSSLYGGGV
                     AYDQGRVFASNGLGFVVALDERNGHQMWKVQPGGPLRGAPSVGNGAVYVISQDNQIYS
                     LKEQDGTTNWSQAATLEIAGVFGSASPAVGQGTVVAGFSSGELNAYRYENGREVWQDA
                     LQRTSIRTSVSSLNDIDADPVIDSGQVIAVGQGGRMVALDLISGQRQWELNIAGIDTP
                     WVAGDWIFVLTDQAKLVCVYRQNGHIRWITQLPQFVKPKAKKGEIDYSGPILAGGRLV
                     ITGSNGALIYVDPTTGAFESQQNLGAPVSLSPVVANSTMYILDDRGRLSAFR"
     gene            4004..>4933
                     /gene="der"
                     /locus_tag="VE968_02130"
     CDS             4004..>4933
                     /gene="der"
                     /locus_tag="VE968_02130"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HZU50654.1"
                     /translation="MPVPTIAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREG
                     NANLLGLEFRVIDTAGFEDDDPHSLPGRMRQQTEAAVREADAALFLIDARDGVTALDE
                     EIGRWLRAGTTPVFIVANKAEGRAGEEGILDAYRLGLGDPVAISAEHGEGLADLFEVI
                     RPAVEIEHSTETDGGIAGSAPLKIAIVGRPNAGKSTLVNRMIGEERMITGPEAGITRD
                     SISLDWRWEGRPVRLVDTAGLRKRSKVDDKLERLSAADTRRAIDYAEVVVLLLDATRG
                     LEAQDLKIAAQVIEEGRALIIALNKWDVAESASS"
BASE COUNT          992 a         1450 c         1534 g          957 t
ORIGIN      
        1 cgccgcaggg acggcgacag ccgaggcgtc aaatccgtgc gactagtcgg gttgactatc
       61 acctcccccg caagactgct cagccgatgc tgggacgcgc ctatgcgccg gcacgtctca
      121 cgcccgtggc gaaaaggtta aatggcgtta atcggatcgc gagccgttag cacctcaggc
      181 tttgcgagtc atttcgggcg cgctaggttc cgtcgcgcga atgatcactc agaagacccg
      241 gtacgccctg cgttcgttat tgtttctcgc cgaggagcaa ggcggagcgc ccgtgcaatt
      301 gagccggatc gcggaaaccc agcgagttcc gcccaaatat ctcgaactca ttatgctcga
      361 tttgaagaag gctggcctcg tcaagagcgc gagagggccg aagggcgggt accagctcgc
      421 gcgctcctcc gaccagattt ccttcggtga gatcgttcgc acgatggagg gaccaattgc
      481 cttggtgtcc tgtgccagcg tcaatttcta tgcgccttgc ggcgactgcc aggatgaagc
      541 cacctgtgca attcggcggg ccttcgcaat cctccgcgat cagagcacgg ccgttcttga
      601 ctcgatatcg cttgcgcagg gtgcgggctg ggaggagcgg ttgaacaccg ctgtgtaacg
      661 gcgaagtgaa gcggcgcgaa acagggcgcc ttccgctccg gatattaacc gatgttaaag
      721 gcgttgattc cgcggttgga tatcattcgt gccatgacat gctatcggat ctgcttaatc
      781 aattcgcatt tcaagagcgc cgacgaggct cagtatacat cgcttgatgc ggcacggagc
      841 gccgcgatcg tcacggcaac caatatcgtt agtgagtcta ttagcgaagg tgagccgact
      901 tctgcagtcg agatccagat ctttgctgat gacgaactcg tctcgcgcca ggtcgtcacc
      961 cttagtgtag ccgagttcac gaccgaccaa tgacgaagca atgcgtaaag actaatgtga
     1021 atcagttctt cagtgccgca attcctatag cgcgtgcagc ggtgatggag gcagttggcg
     1081 catgatagaa gcgcatctga agaagcttcg cgcgcgcgat tcgatcagtg acgaggaaga
     1141 gcaggctgtt cgcggccttg tcgaaagcgt catcgaggtg aagcccgatc gcacggtcgt
     1201 ccgtcacggc gaagaactca accaatcaat gttactcctg tcgggttggc tcgcgcgcgc
     1261 caaggacctc ccgagcggcc agcggcagat tgccgagctt catgttgctg gcgatttcgc
     1321 ggaccttcac ggcttttcgc tcaaatatct ggaccatgac gtgattacga tcacgcgcgc
     1381 gcgaatcggg ctcgttcctc acgagcgcct aaaggagctt acggagcgtt ttccgcatct
     1441 tacgcgcata tactgggcac ttaccaacat cgatgcggcc atccagcgcg aatggacact
     1501 ttcgcttgga aggcgctcgg cgatcgcgcg gatggctcat cttctgtgcg agttgaatgt
     1561 gagacttgga ctcgtcgatc tcacgcaagg gaacagcttc gatttcccgc tgacgcaagt
     1621 ggagttcggc gagtgcctcg ggctaacgtc cgtccacgtc aatcgaacgc tgcaagagct
     1681 tcgccgtcgt gggctgatcg agctacagag ccgccgagtg accattttcg acttggaagc
     1741 actcaaaggc gttgcggaat tcgacaatgc ctacctctat cttcagcagc gtccgcgctg
     1801 accggccccc tttgcctttg gcgtgacagt cgctagacga agcggcgcca gcttccgttc
     1861 atcacgggtg gggaagggga gcagaggcaa gtgtatcccg agctattgga ctgaggcacg
     1921 tcttggcgca accgcctgat atgagcgaaa ctttcctgcg tgaggtcgac gagaaccttc
     1981 gccgtgacca gcttcgcgac tttttcaagg aaaatggctc ctggcttatc gccgcggtcg
     2041 tcgtgttcct cgctgcaagc ggagcaatca tctggtggaa acagcaccag gtggagcgca
     2101 atgaggcgca ggtcgaaaga cttgcccaaa tctacaagga catcggcgcg ggcgatatgg
     2161 cccaggcgcc tcagcagctc gagcagctgt cgaacagtgg aagcaaggcg gttcgtgcct
     2221 ccgcgctatt cgcgcgcgct gccctggcgc tccagcaggg cgacacgaag cttgcgacgg
     2281 cgacgtacca gtccattgcg aacgatgacg gactgccgaa gccttatcgc gatgctgcac
     2341 tcgtccgtga gacggcattg cagttcgacc agcttcggcc cgacgaaata atctcgcgac
     2401 tggtgccgct tgcgaaaccc ggtgaacctt ggttcggcag tgcgggcgaa atgaccgcgc
     2461 ttgcaatgat gaagcagggg aacaatcaac aggcgggcca gctcttcgaa gctctcacgc
     2521 gggaccaggg agtgcccgaa accatccgcg cacgcgctgc ccaggtcgcg agttcgctcg
     2581 gcatggacgt gactgccgcg cctcaagccc aggcccgata ggacaataat gaccagatca
     2641 aagtataagc gcgtcgccgt cgttcttgcc atggcgcttg ccgccagtgg ctgcggcata
     2701 ttcaagaaag gcaaggccgc aggcacaccc gtgcttggca atcgaatcgc ggtgctgacc
     2761 ggcgaaggcg acgtgacggt cgatcccgca atgacttcca tgccgatgag tcttcccggc
     2821 cagtcggtca atagcgattg ggttcagtcc ggcggcaacc agacccattc gatgggccag
     2881 ctcgcccttg gcgatcggcc agttcgagcg tggactgtcc aggcaggccg tggcaattca
     2941 ctgacggcgc gcctcgcctc gccgccgatc gttgccggtg gccgcgtatt caccatggac
     3001 acgctcggcg tcgtccgagc gttcgacgcg cgaaccggcg cgcaggtgtg ggcaagtccg
     3061 actccgaccg agaagggagg atcgagctcg ctttatggcg gcggtgtcgc atacgaccag
     3121 ggccgcgtct tcgcctcgaa cgggctgggg tttgtcgttg ctcttgacga acgcaacggt
     3181 caccagatgt ggaaggttca gcctggcggt ccgctccgcg gcgctccatc cgtcggcaat
     3241 ggcgctgtct atgtcatcag ccaggacaac cagatctatt cactcaagga acaggacggc
     3301 acgaccaact ggtcgcaggc tgcgacactt gaaatcgccg gcgtgttcgg atcggcttcg
     3361 cccgcggttg gccaaggtac ggtggttgcc ggtttttcat cgggcgaact caatgcctat
     3421 cgctacgaga acgggcgaga agtttggcag gatgcattgc agcgcacgag catccgaacg
     3481 agcgtctcat cgcttaatga cattgatgcc gacccggtca ttgacagcgg ccaggtgatc
     3541 gccgtcggac agggcggccg catggtcgcg ctcgacctca tcagcggtca gcgccagtgg
     3601 gagctcaata tcgccggaat cgataccccg tgggtcgccg gtgactggat tttcgtcctc
     3661 accgaccagg cgaagctcgt gtgcgtctac cggcagaacg gtcatatccg ctggatcacc
     3721 cagttgccgc aattcgtcaa acccaaggcg aagaagggcg aaattgacta ttccgggccg
     3781 attttggcgg gtgggcggct ggtcatcacg ggttcgaacg gcgcgctcat ctatgtcgac
     3841 ccaacgacag gcgcttttga gagccagcag aatctcggcg ctccggtcag cttgtcgcca
     3901 gttgtcgcga actcgacgat gtacatcctc gatgatcgcg gtcggctgag tgcattccgg
     3961 taaagcctcg cggcacccct gacgggctgc tatcgaccca gcgatgcctg tcccgacgat
     4021 cgccattgtt ggccggccca atgtcggcaa gtccacgctg ttcaatcggc tcgtgggcaa
     4081 gcgtctcgcg ctggtcgacg accggcccgg cgtgacgcgc gaccgtcggg aaggaaacgc
     4141 caatctgctt gggctcgaat tccgagtgat tgataccgcg gggttcgagg acgacgatcc
     4201 ccactcgctt ccaggtcgga tgcgccagca gacagaagca gcagtgcgcg aggcggacgc
     4261 ggctctcttc ctcattgacg cgcgcgatgg cgtgacggct ctcgacgagg aaattggccg
     4321 ctggcttcgc gctggaacaa cgccggtgtt catcgtcgcg aacaaggccg aaggcagggc
     4381 tggagaagaa ggcatattgg acgcctaccg gctcggcctt ggtgatccgg tcgctatcag
     4441 tgctgaacat ggcgaaggcc tcgccgatct cttcgaggtc atccgtccag cggtcgagat
     4501 tgaacactca accgagaccg atggtggaat agcaggcagc gcgccgctca agatcgcgat
     4561 cgttggcaga ccgaatgcgg gtaaatcgac cctggtcaac cggatgatcg gcgaggaacg
     4621 gatgattact ggccctgagg ccggcattac ccgcgattcg atcagcctcg actggcggtg
     4681 ggagggacgg cccgtgcgtc tcgtcgatac ggctggacta aggaaacgct caaaggtcga
     4741 cgacaagctc gaacgtctgt cggccgccga cacgcggcgc gcgatcgact atgccgaagt
     4801 cgttgtcctt ctgctcgatg caacgcgcgg tcttgaagca caggatctca agatcgctgc
     4861 acaagtgatc gaagagggac gcgcattgat catcgcgctc aacaagtggg acgtggcgga
     4921 aagcgcgtca tcg
//
LOCUS       DASRBJ010000075         6191 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_7646,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000075 DASRBJ010000000
VERSION     DASRBJ010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6191
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7646"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..933)
                     /locus_tag="VE968_02135"
     CDS             complement(<1..933)
                     /locus_tag="VE968_02135"
                     /inference="COORDINATES: protein motif:HMM:NF017973.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobaltochelatase subunit CobT"
                     /protein_id="HZU50655.1"
                     /translation="MVERVDLFRRALAGAARAIAKDPEVEVIFASDNAPATGKTARVP
                     SPGTNLEPTLVSEARGAADSAALRLRFHDPRMHARFAPSDVDARSVFDALESARVEAL
                     GARSMAGVRQNLAQLTEARVRGDAIVRARSADEVPMSTAVGLIARERLTGEPPPRAAA
                     SGLNLVAPWIEEKASSDLDALALTLDDQAAFAKLSRRLLQDLELAASEDSSEEEPQEA
                     GDEDEGDEGGTEDSAEQGDEGTPAGGDMEMRGEEVEDQNAEGESSEEMEASEEEASAG
                     DNLSDSVFAAPSRRNSDLSPVTDYKAFTTRFDEIV"
     gene            complement(934..1941)
                     /gene="cobS"
                     /locus_tag="VE968_02140"
     CDS             complement(934..1941)
                     /gene="cobS"
                     /locus_tag="VE968_02140"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051116 - cobaltochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobaltochelatase subunit CobS"
                     /protein_id="HZU50656.1"
                     /translation="MTDRSNVQPESRSETLLAAPDKMAKVRELFGVDSDMEVPAFSEA
                     DERVPDLDPTYVFDPSTTLAICAGFSKNRRVMVQGYHGTGKSTHIEQVAARLNWPLIR
                     INLDAHISRIDLVGRDAIVLREGQQVTEFREGLLPWALQHPVALVFDEYDAGRPDVMF
                     VIQRVLEAEGKLTLLDQNRVIRPNPWFRLFATTNTIGLGDTTGLYHGTQAINQGQMDR
                     WNIVTTLNYLPAAVEAQIVLAKSGEYDDPGGKQVVDKMIKVAELSRQGFINGDISTVM
                     SPRTVISWAQNAHIFGDIGYAFRVSFLNKCDESERPLIAEYYQRVFGEDLPESVVSKA
                     G"
     gene            complement(1953..2627)
                     /locus_tag="VE968_02145"
     CDS             complement(1953..2627)
                     /locus_tag="VE968_02145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HZU50657.1"
                     /translation="MQLEKVTKPSAAVEKRRYDDACGLAHALELIGERWAMLVLRELA
                     YGPRRFSELKSDLPGISANVLTQRLAELEERGIVRKRKLPPPASVQVYEATEWGLEAA
                     PVIGRLGKWAARSPLHDPTLPISHAAIMMSLETMIDAERAKDIDAIIGFQLGDIRYVA
                     HLHSGKLDIERRTVEQCDVLFICAPAELAAVIYGGAPLAMIGVKGDLALAKRFVTLFP
                     LPPKAG"
     gene            2691..3137
                     /locus_tag="VE968_02150"
     CDS             2691..3137
                     /locus_tag="VE968_02150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004208034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HZU50658.1"
                     /translation="MPRMIFVNLPVSDLQKSRKFLEALGAVNEPKFTDETAACMTLSE
                     TIHVMLLTHDKFTQFTPLPIADARESAQVILCLSAESREKVDQTIDRAVAAGGSADPS
                     PKQDYGVMYGRSIADPDGHHWEIMWMDAKAAERGADAVHEAVAGEG"
     gene            3149..3832
                     /locus_tag="VE968_02155"
     CDS             3149..3832
                     /locus_tag="VE968_02155"
                     /inference="COORDINATES: protein motif:HMM:NF024809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HZU50659.1"
                     /translation="MPLKQEAEIEVTAFRWVPQGAQGLVKDLRVRWALEEAGLDYRVR
                     LIGPERPPRYLEDQPFNQVPCFRDERVQIFESGAILQYIGEKTELLLPRQTQARIRAV
                     QWTYAAANSIEPFVQHRVLLDVIFADEEWATQSKPTMDQLARLRLQQLSGWLTGRLWL
                     EDDRFTIGDLMMVTVLRIADRGGLLSDFPILSDYVRRGQERAAFKQALGDQLAVYTAN
                     PPHLEGAAA"
     gene            3829..4584
                     /locus_tag="VE968_02160"
     CDS             3829..4584
                     /locus_tag="VE968_02160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003046715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 domain-containing protein"
                     /protein_id="HZU50660.1"
                     /translation="MTYLEGFVAPVSEHNKDAYREHASRIAPILKEFGIRRIAEGWAD
                     EVPRGNITDFYRAVAARDGETVVFSFFEYESKAARDAANEKFATDPRLSELGANVPFD
                     AKRMILGGFQAIVEAGDTTGSYLNGFVAPVPANKKETYRALTERHASVFREYGALRLV
                     QAWGDDVPHGRITDFHRAVQATPDEVVVFSFIEWASKEASSNAWAKLMKDERMQPSGD
                     MPFDGKRMFWGGFQTIFDTAEPQMISVEVPLGK"
     gene            4612..5445
                     /locus_tag="VE968_02165"
     CDS             4612..5445
                     /locus_tag="VE968_02165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003046713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HZU50661.1"
                     /translation="MMTDVRTAPTPTLGQERQERKGDFIWYELMTTDSSRAKQFYEAV
                     VGWKIGEAVAEYGGYRMIGRSDGKFAGGLLQLTSEMEQHGARPTWLAYLSVDDVDEAV
                     SNIEAAGGKAMMPPFDIPNVGRIAMVSDPQGAPFYVMKPIPPADDPNAVSDVFSPNEE
                     QRVGWNELQTSDVDGARRFYGRQFGWGSEEFMSMGEMGDYRFWDHRGERIGALFDPKN
                     GQPPHWRFYFRVASVEAARSAVEDHGGMIHMGPHEVPTGDWVIIGSDPQGAEFALVGA
                     K"
     gene            5457..5951
                     /locus_tag="VE968_02170"
     CDS             5457..5951
                     /locus_tag="VE968_02170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HZU50662.1"
                     /translation="MAGKIAACLWFNGQAEEAANFYASVFPDSSVKAVHRAPGDYPAG
                     KAGDILTVEFTVLGMNFLGLNGGPQFKFDEAVSFQVYTENQEETDRYWNAITGNGGEE
                     VACGWCKDRFGLSWQVTPRRLMELIADEDPANSKAAFNAMMAMRKIDITVLEKAVRDV
                     NADA"
     gene            5938..>6191
                     /locus_tag="VE968_02175"
     CDS             5938..>6191
                     /locus_tag="VE968_02175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HZU50663.1"
                     /translation="MPMRRLTAAVFMSLDGVMQAPGGPDEDPTSGFRHGGWSFHYWDE
                     SLEQPFGKIINAEYDLLLGKRTYEIFAAFWPYNQETPIGER"
BASE COUNT         1292 a         1778 c         1890 g         1231 t
ORIGIN      
        1 gacgatctcg tcgaagcggg tagtgaatgc cttgtaatcg gttaccggcg aaagatcgga
       61 gttccttcgg ctcggagcgg caaagacgct gtccgacaga ttgtcgccag cgctcgcctc
      121 ctcttcgcta gcttccattt cctcggaaga ttcgccctcg gcgttctgat cctcgacctc
      181 ttctccccgc atctccatat caccgcctgc gggcgttcct tcatcgccct gctcggcgga
      241 atcctcggtt cctccctcgt cgccttcatc ttcatcgccg gcctcctgag gttcttcctc
      301 ggagctgtcc tcggacgcgg caagttcgag gtcctggagc agcctgcgtg agagcttcgc
      361 gaacgcggcc tggtcgtcga gtgtcaatgc aagcgcatcg aggtcagacg aagccttttc
      421 ctcgatccac ggtgcgacga ggttaagtcc ggaggcggcg gcacgaggcg gcggttcacc
      481 cgtcaaccgt tcccgcgcaa tgaggccgac ggcggtcgac attggcacct cgtcggccga
      541 acgcgcgcgg acgatggcgt cgccacgaac ccgcgcttcg gtgagctgtg caagattctg
      601 ccgaactccc gccattgagc gggcaccgag cgcttcaacg cgagctgatt caagtgcatc
      661 aaaaactgac cgtgcatcca cgtcgctggg tgcgaagcgc gcgtgcattc gtgggtcatg
      721 gaaccgaagc cttaaagctg ccgaatcggc agcgccgcga gcttccgaga ccagcgtcgg
      781 ctcgagattc gtcccgggcg atggcacgcg cgcggtcttg cccgttgctg gcgcattatc
      841 ggacgcgaag atgacctcga cctcggggtc ttttgcaatc gctcgcgctg cgcccgcaag
      901 cgcgcggcga aaaaggtcga cgcgttcgac cactcagcct gccttgctga caacgctttc
      961 cggcaagtcc tcaccaaata cgcgctggta atattcagcg atcagcgggc gctcggactc
     1021 gtcgcactta tttaggaagc tgacgcggaa cgcgtagcca atatcgccga agatgtgcgc
     1081 gttctgagcc cagctgatca cggttcgcgg gctcatcacc gtcgatatgt ccccgttgat
     1141 gaacccctgg cgcgagagtt cggcaacctt gatcatcttg tcgacgacct gctttccgcc
     1201 tggatcgtca tattcaccgg atttcgcgag cacaatctgg gcttcgactg cggcgggcaa
     1261 atagttgagc gtcgtcacaa tgttccagcg gtccatctgc ccctggttga tggcctgggt
     1321 gccgtggtaa agccccgtgg tgtcgccaag tccgatggtg ttggttgtcg cgaacagccg
     1381 aaaccagggg tttggccgaa tgacgcgatt ctggtcgagc agcgtgagtt tgccctccgc
     1441 ctcgagcacg cgctggatca cgaacatgac gtcggggcgt cccgcatcat attcatcgaa
     1501 caccaaagcc accgggtgct ggagcgccca aggcagcaga ccctcccgga actcagtgac
     1561 ctgctgacct tcgcgaagaa cgatcgcgtc acgcccgaca agatcgatcc ggctgatatg
     1621 agcatcaagg ttgatccgga tgagtggcca gttgagacgc gccgcaacct gctcgatgtg
     1681 ggtcgacttt ccagtcccat gatagccctg gaccatcacg cgccgattct tcgaaaatcc
     1741 agcgcagatc gcgagcgtgg tgctggggtc aaaaacatag gtcggatcaa gatcgggcac
     1801 gcgctcatcg gcttcgctga acgccggtac ctccatgtcc gagtccacac cgaaaagttc
     1861 gcgcaccttg gccatcttgt cgggagccgc gagcaatgtc tcggagcggc tttcgggctg
     1921 aacatttgat cgatcggtca tgggaaggtg ccttaacccg cctttggtgg aaggggaaag
     1981 agcgtcacaa aacgcttcgc aagcgccaag tctcctttaa cgccaatcat tgcaagcggc
     2041 gcgccgccgt aaatgaccgc agcaagctcg gctggcgcgc agatgaacag cacatcgcat
     2101 tgctcaaccg tccgacgttc tatgtcgagt ttgcctgagt ggagatgggc tacgtagcgg
     2161 atgtctccaa gctggaagcc aatgattgca tcgatgtcct ttgcccgttc ggcatcgatc
     2221 atcgtctcga gcgacatcat gattgccgca tggctgatcg gcaacgtcgg gtcgtggagc
     2281 gggcttcggg ccgcccattt tccaagtcgg ccgataacgg gggcagcctc aaggccccac
     2341 tccgtcgcct catagacctg cacggacgcg ggcgggggca gtttcctctt tcgaacgatg
     2401 ccgcgctcct caagctcggc gaggcgctgg gtcagtacgt tcgcgctaat tcccggaaga
     2461 tcactcttga gttcagaaaa gcggcgcgga ccataagcca gttcgcgaag tacgagcatc
     2521 gcccagcgtt cgccgatcaa ttcaagcgcg tgcgcaagac cgcacgcgtc gtcatagcga
     2581 cgtttttcca cagcggcaga gggcttggtt accttttcta actgcacggt tgtaatttat
     2641 gatcaatatg ggcaatattc aagtgtcctc gagtcgcggg agttgaaaac atgcctcgaa
     2701 tgatcttcgt gaacctgccc gtcagcgacc tccagaagtc gcgcaaattc ttagaggcgc
     2761 tcggcgccgt gaatgagcca aagttcaccg acgagactgc agcgtgcatg acgttgagcg
     2821 agacgatcca cgtgatgctt ttaactcacg acaaattcac ccagtttacg ccgctaccga
     2881 tcgctgacgc gcgcgaatca gcgcaggtca tactgtgctt gtcagcggaa agccgggaaa
     2941 aggtcgacca gacgatcgat cgcgctgtag ccgctggcgg aagtgctgat ccgtcaccca
     3001 aacaggatta tggcgtcatg tacgggcgaa gcattgccga tccggatggc catcattggg
     3061 aaatcatgtg gatggacgcc aaagccgcgg agcgcggcgc tgacgccgtg cacgaggccg
     3121 tagcaggcga gggctgaggc taaaatcgat gccgctcaag caggaagcag aaatcgaggt
     3181 caccgcattt cggtgggtgc cacaaggagc gcaggggctg gtcaaggacc tgcgggtacg
     3241 ctgggcactc gaagaagcgg gactcgatta tcgcgttcga ctgatcggac ccgagcggcc
     3301 gcctcgctac ctcgaggatc agccgttcaa ccaggttcca tgctttcgtg acgagcgtgt
     3361 acagatcttt gaatcgggag caatactgca gtatatcggt gaaaagaccg agctcctgct
     3421 cccaaggcaa acgcaggctc ggatccgagc agtgcagtgg acctatgctg cagcgaacag
     3481 catcgaaccg ttcgtacagc accgagtgct tcttgatgtc atcttcgcgg acgaggagtg
     3541 ggcgacgcaa agcaagccaa cgatggacca acttgcgcgg ctgagattgc agcagctctc
     3601 cggctggctg actgggaggc tgtggctcga agatgaccgg ttcacgatag gcgatctcat
     3661 gatggtcacg gtcctgagga ttgccgatcg cggcggtctt ctttccgact tcccgatcct
     3721 ttcagattat gtccgccgcg gacaggagcg cgccgctttc aagcaggcgc ttggcgatca
     3781 gctcgccgtc tacacggcaa acccgcctca cctggaagga gcagcagcat gacttacctc
     3841 gagggcttcg tcgcaccagt ttcggaacac aataaggatg cttaccgcga gcatgcgagc
     3901 aggattgcgc cgatattgaa ggagttcgga atccgccgga ttgccgaggg gtgggccgat
     3961 gaggtgccgc gcgggaatat tacggatttc tatcgtgctg ttgctgcacg ggacggcgag
     4021 acagtcgtat tctcgttctt cgaatatgag tcgaaggcgg cgcgcgatgc tgcgaacgag
     4081 aagttcgcaa ccgatccgcg gcttagcgaa ctcggcgcaa acgtcccgtt cgacgcgaag
     4141 cggatgatcc ttggcgggtt tcaagcgatc gttgaggccg gcgacacgac tgggagctat
     4201 ctgaacggat ttgtcgcgcc ggttccagcg aataagaaag aaacgtaccg cgcgttgacc
     4261 gagcgacacg cgagtgtctt tcgcgaatat ggcgcacttc ggcttgtgca ggcgtggggc
     4321 gacgacgtgc cccacggaag gatcacggat ttccatcggg cggtgcaggc aacgccggac
     4381 gaggtagtcg tgttctcgtt catcgagtgg gcatcgaaag aggcgagctc caacgcttgg
     4441 gcgaagctca tgaaggacga acgaatgcag ccttcgggcg acatgccttt cgatggcaaa
     4501 cgcatgttct ggggaggatt tcaaacgatc ttcgacaccg ctgaaccaca aatgatttca
     4561 gtcgaagttc cactaggcaa atagcgcaag catttcgatg aaggagggcg aatgatgact
     4621 gacgtccgta ccgcaccaac gccgactctt ggtcaggaaa ggcaggaacg aaagggcgac
     4681 ttcatctggt acgaattgat gacgacggac tcgtcgcgtg ccaagcaatt ctacgaagcg
     4741 gtcgtcggct ggaaaatcgg cgaagcggtg gccgaatatg gtggctaccg gatgattgga
     4801 cggagcgacg gcaagttcgc cggtggcctc ctgcagctca cgagcgagat ggagcaacat
     4861 ggagctaggc cgacttggct cgcttatctt agcgtggacg acgtcgatga ggccgtcagc
     4921 aatatcgaag cggccggagg caaggcgatg atgcctcctt tcgacattcc caacgtcggg
     4981 cgcattgcca tggtttccga cccgcagggc gctcctttct acgttatgaa gccgatcccg
     5041 ccggccgatg acccgaatgc cgtaagcgat gtcttctcac cgaatgagga gcagcgagtc
     5101 ggatggaacg agctgcagac gtccgacgtc gacggagctc gccgcttcta tggccgccaa
     5161 ttcggctggg gcagtgaaga gttcatgtcc atgggcgaaa tgggcgatta ccgtttttgg
     5221 gatcaccgtg gtgagcgcat cggcgcactg ttcgacccga agaacggcca gccgccacac
     5281 tggcgcttct attttcgggt ggcatcggtc gaggctgcca ggagtgcagt cgaagaccac
     5341 ggtggaatga tccatatggg gccgcacgag gttccgaccg gcgactgggt aatcatcgga
     5401 tccgaccccc aaggtgctga attcgcgctg gtcggcgcga agtaaggagt tccatcatgg
     5461 ctggtaagat tgccgcttgc ctgtggttca atgggcaggc tgaggaagct gcgaacttct
     5521 acgcttcggt attccccgac agcagcgtga aggccgttca ccgagctcca ggagactatc
     5581 ccgcaggaaa ggccggcgac atcctgaccg tcgaattcac tgtccttgga atgaatttcc
     5641 tcggcttgaa cggtggacct caattcaaat tcgatgaggc ggtctcgttc caggtttaca
     5701 cggaaaacca ggaggaaaca gatcgctatt ggaacgcgat cactggtaac ggcggcgagg
     5761 aggtcgcctg cggctggtgc aaggatcggt tcggcctctc gtggcaggtc acgccgaggc
     5821 ggctcatgga gctcatcgcc gacgaggatc cagcgaactc aaaggcggct ttcaatgcaa
     5881 tgatggcgat gcggaaaatc gacatcaccg tgctcgagaa agccgttcgg gacgttaatg
     5941 ccgatgcgta ggctaaccgc tgcggtcttc atgtcactag acggcgtcat gcaggcgccc
     6001 ggcggaccgg acgaggatcc caccagcggc tttcgtcacg gcggatggtc attccactat
     6061 tgggacgaaa gcctcgaaca gcctttcggc aagatcatca acgccgaata tgatctcctc
     6121 cttggcaagc gcacatacga gattttcgcc gcattttggc cttacaacca ggagacgccg
     6181 atcggggagc g
//
LOCUS       DASRBJ010000076         2381 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_671732,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000076 DASRBJ010000000
VERSION     DASRBJ010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2381
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_671732"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..405)
                     /locus_tag="VE968_02180"
     CDS             complement(<1..405)
                     /locus_tag="VE968_02180"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HZU50664.1"
                     /translation="MNRGDWAILLLLAVIWGGAFFLIGVVVRHVPPLTYVWLRVTIAA
                     LGMSAYIYFVGGKPSIPRRAWGSMLVLALLNNALPFVLFGWSQTHIASGLASILNATT
                     PIWGVVVAHFLTPDERITPAKAAGVLLGFGGVA"
     gene            complement(573..1397)
                     /gene="dapD"
                     /locus_tag="VE968_02185"
     CDS             complement(573..1397)
                     /gene="dapD"
                     /locus_tag="VE968_02185"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008666 -
                     2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HZU50665.1"
                     /translation="MTSELKDVIERAFDARDTVGTHTKGEIRLAVDAAIAMLDKGEAR
                     IAENHAGTWTVHQWLKKAVLLSFRLNPMEAIAGGPGGAHWWDKVPSKFAAWGENEFAR
                     AGFRAVPGAIVRRGAFVAPGAVLMPSFINIGAYVGAGSMVDTWATVGSCAQIGRNVHI
                     SGGAGIGGVLEPLQAGPVIIEDDCFIGARSEVAEGVIVERGSVLSMGVFLGASTKVVD
                     RASGEVHYGRVPAYSVVVPGAFPAKGGGPSLSCAVIVKRVDERTRSKTSINELLRD"
     gene            complement(1387..2064)
                     /locus_tag="VE968_02190"
     CDS             complement(1387..2064)
                     /locus_tag="VE968_02190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HZU50666.1"
                     /translation="MDPAFTHIRDWIFDLDNCLYPASTGLFALIDERMGAYIERLLGC
                     DPKEAKRIQKAHFHNHGTTLAGLMKEHEVDPHHFLADVHDIPLDRVEADERLARLLGL
                     LPGRRFVFTNGDAAYARRVLEAIGIQDRFDELHDIHASDLRPKPDRYGYELLCDRFGI
                     DPRHALLADDMVQNLAPAKRLGMTTVWVDNGSERGDHGYDEALVDHRVNGLGEWLESI
                     LGIADDK"
     gene            complement(2161..>2381)
                     /locus_tag="VE968_02195"
     CDS             complement(2161..>2381)
                     /locus_tag="VE968_02195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50667.1"
                     /translation="LAREMPVHNPLPEARSCPPTPMSLARKLGRRPPRAIPLDSLPPA
                     EAFMAVDRRVNGCPAPLTMTGYRSGIRR"
BASE COUNT          506 a          719 c          714 g          442 t
ORIGIN      
        1 cgcgacgccg ccaaagccca gaagaacgcc ggcggccttt gctggagtaa tccgttcatc
       61 aggcgtgaga aaatgcgcaa caacgacccc ccagatcggc gttgtcgcgt tgagaattga
      121 cgcgagaccg cttgcgatgt gcgtctggct ccagccgaaa agcacgaatg gaagtgcatt
      181 gttgagcaac gcaaggacaa gcatcgatcc ccacgcacgg cgcggaattg agggcttccc
      241 gcccacgaaa tagatgtaag ccgacattcc caaggccgcg atggtgaccc ggagccaaac
      301 gtaggtgagc ggcggaacgt gtcgtacgac cacgccgatc aagaagaagg cgccgcccca
      361 gatcaccgct aggagcagaa ggatcgccca atccccgcgg ttcattcgcg tgcggatcgc
      421 ggacgagcaa cgcgcgtcgg tcgaggcagg tgcggtcgaa ttattccgat cgaactctga
      481 tgatgacgtc ggcttcatcg cgtcgtgtgc ataaccggcg gctggcatcg agtgccaaca
      541 aatggctcgg ttcgagccat aaggccaact tatcagtccc gcagtagctc gttgatgctg
      601 gttttggagc gagtgcgctc gtcgacacgc ttcacgatca cggcgcacga aagcgacggg
      661 ccaccacctt ttgcggggaa tgccccaggg acaacaacgg aataggcggg cacccgaccg
      721 taatggactt cgccgcttgc gcgatcgacg acctttgtcg aggcgccgag gaagacaccc
      781 atcgatagta ccgacccacg ctcgacgata actccttcgg cgacttcgga acgcgcgcca
      841 atgaagcagt cgtcttcgat gatgactggc cccgcctgga gtggttcaag cacaccgccg
      901 attccagcgc ctccggatat gtggacgttc ctgccaatct gcgcacagct cccgacagtc
      961 gcccaagtgt cgaccatgct acccgccccg acataggcac cgatgttaat gaagctcggc
     1021 atcaggacag cgccgggcgc aacaaaggcg ccgcgccgta caatcgcgcc ggggacagcc
     1081 ctgaacccgg cgcgggcaaa ctcattttcc ccccaggccg cgaattttga aggaactttg
     1141 tcccaccagt gagcaccccc gggcccgcca gcaatcgctt ccatggggtt cagccgaaag
     1201 gagagcaata cggctttctt gagccattgg tggaccgtcc acgtgcccgc atggttctcg
     1261 gcaatgcgcg cttcaccctt gtcgagcatc gcgattgccg catcgaccgc caggcgaatt
     1321 tcgcccttgg tatgggtgcc gacagtgtct cgtgcgtcga aagcgcgctc gatgacgtcc
     1381 ttgagttcac ttgtcatcgg cgatccccaa aatgctttcg agccattcac caaggccatt
     1441 cacgcgatgg tcgacgagtg cttcgtcata gccgtgatcg ccgcgctcag agccgttgtc
     1501 gacccagact gttgtcatgc caagccgctt cgcgggtgcg aggttctgga ccatgtcatc
     1561 ggcgagaagc gcatggcgag ggtcgatccc aaagcgatcg catagaagtt cgtaaccgta
     1621 gcgatcgggt tttggacgaa ggtcgctcgc atgaatgtcg tgaagttcgt cgaagcgatc
     1681 ctgaatgccg atcgcctcca atactcggcg tgcgtaggca gcatcgccgt tggtgaagac
     1741 gaagcgccgg cccggcaaca aaccgagcaa tcgggcgaga cgttcgtccg cttcgaccct
     1801 gtcgagcgga atgtcatgga cgtccgcgag aaaatgatgc ggatcaacct catgttcttt
     1861 catgaggccg gcaagagttg tcccatgatt atggaaatgc gccttctgga tgcgcttggc
     1921 ctccttcgga tcgcagccga gcaggcgttc gatataggcg cccattcgct cgtcgatcag
     1981 tgcaaacagt cccgtcgatg ccgggtacag gcagttgtcg agatcgaaaa tccaatcgcg
     2041 gatgtgagtg aaagccggat ccattcgcgc gttggccgta gcgcttgctt tgcctcaagc
     2101 aaatcgaaac aattccggtc ggccgcatcc ttttgccggc gcgctcggta cggtcaccgg
     2161 ttagcgtcgt attccggagc gatagccagt catcgtgagt ggcgccggac agccattgac
     2221 tcgacggtcc accgccatga acgcctcggc gggaggaagc gaatcaagcg gaatcgcccg
     2281 tggcggacga cgcccaagct tgcgggccag cgacatcggg gtaggaggac atgaacgtgc
     2341 ctccggaagc ggattatgca ctggcatttc gcgtgcgagt t
//
LOCUS       DASRBJ010000077         4557 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_413542,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000077 DASRBJ010000000
VERSION     DASRBJ010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4557
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413542"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..425
                     /locus_tag="VE968_02200"
     CDS             <1..425
                     /locus_tag="VE968_02200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HZU50668.1"
                     /translation="IATMLLSPPNELGELADWRQTADLVLVDAPCSGSGTWRRNPEAR
                     WRLTPERLERLLHDQRRLLDLGAALVRPGGRLVYAVCSILSREGSGQISGFLDDHSSW
                     IRETAPIAGGRPDGPGLLLTPFHDRTDGFFVARLRRPW"
     gene            451..948
                     /locus_tag="VE968_02205"
     CDS             451..948
                     /locus_tag="VE968_02205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZU50669.1"
                     /translation="MQSFSRFIVIGLVSAGLSVPLGAERPDDQILPKAAELQRQAHEM
                     MAAGKLEQAEDLLETSLAVDPRNRGAFVDIARVAERQHLYGKAIRMTNKALEIEANDP
                     DAIAVQGEAMVELGAVARAQANLQKLHQICGAKACPQLAQLSAAITRGPTVASAKAPP
                     GPKKD"
     gene            complement(945..1763)
                     /gene="rsmA"
                     /locus_tag="VE968_02210"
     CDS             complement(945..1763)
                     /gene="rsmA"
                     /locus_tag="VE968_02210"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HZU50670.1"
                     /translation="MSDRPEPLREVIARHGLSASKQLGQNFILDRQLLARIAEIPGTL
                     RGEHVYEVGPGPGGLTRALLDKGASVVAVERDRRCIPALRELQEQFKERLAIIEGDAL
                     GIGEEAINAKGTHVVANLPYNIGTPLLLKWLSGAWPPWWSSLTLMFQKEVAERIVAQA
                     GTDAYGRLSVAVQWRSRARVAMALTRSAFVPPPKVASAVVHIVPAVQPEGVDPRMIEV
                     LTGAAFGQRRKMLRSSLKNVAGALTAAEEVGIDTQRRAETVTVDEWIKLARVLS"
     gene            complement(1760..2764)
                     /gene="pdxA"
                     /locus_tag="VE968_02215"
     CDS             complement(1760..2764)
                     /gene="pdxA"
                     /locus_tag="VE968_02215"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017668538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HZU50671.1"
                     /translation="MAPALHNALAVSLGDPAGIGPEVIAKCWDDRDALGIPPFVAIGD
                     PRSVAAVWKGPIELVDNPRQAEAAFERGLPLIQLNAQQPDVPGRPSVAGAHASLDALE
                     LAVGLARSGSAAGVVTGPVAKEQLYAIGFQHPGQTEFVAERCGVAPANVVMMLAGPTL
                     RTVPVTTHLPLGDVTQRLSSALIESRGRATLRGLQRNFAIAEPRLAISGLNPHSGEGG
                     KLGREEIEIIEPAIAALAAEGWRVTGPHPADTMFHAAARARYDAALCMYHDQALIPIK
                     ALHFEEAVNVTLGLPIVRTAPDHGTAFDIAGENRADPRPMAAAMCMAAENAVRRAEAP
                     "
     gene            complement(2792..4141)
                     /locus_tag="VE968_02220"
     CDS             complement(2792..4141)
                     /locus_tag="VE968_02220"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017503432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HZU50672.1"
                     /translation="MNCTRTLLVGAAMGLGLATGALAQQPAPAADQPAVNSSESLRLP
                     QNPEVFGTAMPSVVKATAIVNGDVITQTDIEQRLQLLAIANGGQIPPDERERVAEQVL
                     RNLIDETLEIQAAKDEKIEIKKADIDKTVLRVAQNVKKTPEQLAAYLQQNGSDIKSLR
                     RQIEGEIAWQRLQHEKIESGVTVGDDEVKAVLDKLNASKGTEEYRVGEIFLSASPATE
                     SQTLDNANKILTQLRNGASFAGYARQYSEASTAAVGGDLGWVRPEQLPAPLASALREM
                     PAGSISNPIPVPGGFSIIAVQDTRKILTPDPRDAVLSLKQVSITFPKGTTREAAEPIV
                     ARFGEAAKNIGGCGGTDKIAAEFHGEVVTSDGVKMRDLPPALQRLMVPMQVGQATQPF
                     GSLEEGVRVLVICGRDEVNQSAPTYDDIYQQLNDERVNSRARRYLADLRRDAVIEFR"
     gene            complement(4219..>4557)
                     /locus_tag="VE968_02225"
     CDS             complement(4219..>4557)
                     /locus_tag="VE968_02225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HZU50673.1"
                     /translation="TYAQVGYLKLNRNIDPSIEDLSNHEELQVAGRILVRRHWSVFGA
                     TVIDLTNKREDPLSTANGFQFVRNRLGIEYSDDCLDLGVSWRRDYEVIGTFRKGSTFA
                     LHIALKGVSR"
BASE COUNT          832 a         1398 c         1396 g          931 t
ORIGIN      
        1 caattgcgac gatgttgctc agtccaccaa atgaactggg cgaattggcg gactggcgtc
       61 aaacggccga tcttgtgctc gtcgatgcac cctgttcggg aagtggcacc tggcgtcgca
      121 atccagaagc gcgctggcga cttacaccag agcggctcga gcggctgttg cacgatcaac
      181 ggcgtctcct tgatctcggg gctgcgctcg tccgaccggg cggacgcctc gtctacgcgg
      241 tctgctcgat tttgtcccgc gaagggtcag gccagattag cggcttcctt gacgatcatt
      301 catcgtggat tagggagacg gcgcccattg ctggagggcg tccggacggt cctggtctgc
      361 tgttgacgcc atttcatgac aggaccgacg gctttttcgt cgcgcgcctg cgccggccat
      421 ggtagacggc ggcgacacgt ggagaacttg atgcagtcct tttcccgctt tatcgtgatt
      481 ggccttgttt cagccgggct ctcggtgccg ctcggggcag aacgcccgga cgatcaaatt
      541 cttcccaagg ccgccgagct ccagcggcag gcccacgaaa tgatggcggc gggcaagctc
      601 gagcaggccg aggatctcct cgagacatca cttgccgtcg atcctcgcaa tcgcggcgca
      661 ttcgtcgaca ttgccagggt tgcggaacgg cagcacttgt acggcaaagc gatccgtatg
      721 acgaacaagg cgctcgagat cgaagccaac gaccccgacg ccatcgctgt tcaaggggaa
      781 gccatggtcg agctcggcgc cgtcgcgcgt gcccaggcca atcttcagaa gctccaccag
      841 atttgtggcg ccaaggcatg tccgcagctt gcgcagcttt cggccgctat tacccgcggt
      901 ccgaccgttg cctccgcgaa ggccccgccg ggcccaaaga aagactagct cagcacgcgc
      961 gcgagcttta tccattcgtc gaccgtgacc gtctcggcac gacgctgcgt atcgattccg
     1021 acttcctcgg cagcagtgag tgcgccggcc acattcttga gactggaacg cagcatcttg
     1081 cgtcgctgac cgaacgccgc tcccgtgagt acctcgatca tgcgggggtc aacgccttcg
     1141 ggttggaccg ctgggacgat atgaacgacg gccgatgcga ccttcggcgg tggtacgaac
     1201 gctgagcgtg taagcgccat tgctacccga gcccgtgacc tccactgaac ggcaaccgac
     1261 agcctcccgt aagcatccgt tcccgcttgg gcgacgatgc gttcagcgac ttccttttgg
     1321 aacatcaagg taagcgagct ccaccagggc ggccatgcac cgctcagcca tttgaggagg
     1381 agtggggtgc cgatattgta ggggaggttc gcgacgacgt gcgttccctt ggcattgatc
     1441 gcttcctcgc cgattccgag ggcgtcgccc tcgatgatgg caaggcgctc tttgaactgt
     1501 tcctggagtt ccctaagcgc tggaatacag cgtcgatcgc gctcgaccgc gaccaccgaa
     1561 gcgcctttgt cgagaagcgc tcgagttagg ccgccggggc cggggccgac ctcatagacg
     1621 tgttcgccac gaagcgtgcc cggtatctcg gcaatccggg ccagaagctg tcgatcaaga
     1681 atgaaattct ggccaagctg cttgcttgcg ctcagcccat ggcgtgcgat gacttcgcgc
     1741 agcggctccg gccgatcgct caaggcgcct ccgcccgccg cacggcattt tcagccgcca
     1801 tgcacatcgc tgcagccatc ggtcttggat ccgcccggtt ctcgcctgct atgtcaaacg
     1861 cggtgccgtg gtctggagcc gttcggacaa tcggcaaacc aagcgtgacg ttcactgcct
     1921 cttcgaaatg aagtgccttg attgggatca gcgcctggtc gtgatacatg caaagcgccg
     1981 cgtcatatcg cgcgcgggca gcggcatgga acatcgtgtc ggcagggtgg gggccagtca
     2041 cgcgccaacc ttcggcggca agtgcggcga tcgctggctc gatgatctct atctcttctc
     2101 ggccaagctt gccgccctct ccggaatggg gattgagtcc agagatggcg agacggggct
     2161 ccgcgattgc gaaattcctc tgaagaccac gaagtgttgc acgtccgcgt gattcaatca
     2221 gcgcactgct taaccgctgc gtgacgtcgc cgagggggag gtgggttgtg actggcacgg
     2281 ttcgcagcgt tggaccagca agcatcatga cgacatttgc tggcgcaacg ccgcagcgct
     2341 cggcaacaaa ttccgtctgt cccgggtgct ggaacccgat tgcgtaaagc tgctccttgg
     2401 cgacagggcc cgttacaacg ccggccgcag accctgagcg ggcaaggccg accgcgagtt
     2461 caagagcatc aagcgatgcg tgagcgcccg cgacgcttgg tcgtccgggc acgtccggtt
     2521 gctgcgcatt cagctggatg agtggaaggc cccgttcgaa ggcagcctcg gcttggcggg
     2581 gattatcgac aagttcgatc ggccccttcc agacagccgc caccgagcgt ggatcgccaa
     2641 tggccacaaa tggaggaatt cccagagcgt cccggtcatc ccagcatttg gcgatgacct
     2701 cgggtccaat tccggccggg tcgccgagcg aaacggcaag agcattatgg agcgcagggg
     2761 ccatcaattg cgccctagcg caactggcgg actagcggaa ttcaatcacg gcgtcgcgcc
     2821 gcaggtcggc aagatatcga cgcgcacgtg aattgacccg ttcgtcgttc agctgctgat
     2881 agatgtcatc ataggttggt gccgactgat tgacctcgtc acgaccgcag ataaccagca
     2941 cccgcactcc ctcctcgagc gacccaaagg gctgagttgc ctgaccaacc tgcattggaa
     3001 ccatgagacg ctggagagcc gggggaagat cgcgcatttt cacgccatcg ctcgtgacga
     3061 cctcgccgtg gaattcggct gcgatcttgt cggtgccgcc gcaaccgcca atgttcttcg
     3121 ctgcttcgcc aaaacgcgca acgatgggct cggctgcttc acgcgtcgtc cccttcggga
     3181 acgtgattga gacctgcttc agactgagaa cggcgtcgcg aggatcgggc gtcaggatct
     3241 tgcgtgtgtc ctggaccgcg atgatcgaga atccgccagg gaccggtatg ggattgctga
     3301 tcgaccccgc gggcatttcg cgaagagcgc tcgcgagagg tgccggcaac tgctctggcc
     3361 gaacccagcc aagatctccg ccgactgccg cggtcgacgc ttcggaatat tgccgcgcgt
     3421 agccagcgaa cgaggcgcca tttcgaagct gcgtcaggat cttgttggca ttgtcgaggg
     3481 tctgcgattc cgtcgccgga ctagcagaga ggaagatttc gccgactcgg tattcctcgg
     3541 tgcctttcga ggcgttgagc ttgtcgagca ccgccttcac ctcgtcgtcg ccgacggtaa
     3601 ctccgctttc gatcttctcg tgctgaaggc gctgccatgc aatctcgcct tcgatctgtc
     3661 ggcgaaggct tttgatgtcc gaaccgttct gctggagata ggcagcaagc tgttcgggcg
     3721 tcttcttcac gttctgcgcg acacgaagga ccgtcttgtc gatgtcggcc ttcttgatct
     3781 cgatcttttc gtccttggcg gcctggatct cgagcgtctc gtcgatgagg tttcgaagca
     3841 cctgctccgc aacgcgctcg cgttcatccg gcggtatctg tccgccgttt gcgatcgcca
     3901 gaagttgaag gcgctgttcg atgtcggttt gggtgatgac atcgccgttg acgatcgccg
     3961 tcgccttcac gaccgacggc atcgccgttc cgaagacttc cggattttgc ggcagtcgaa
     4021 gcgattcgct gctgttcacc gccggctgat cggcagctgg cgccggctgc tgcgccaagg
     4081 cgccagtggc gaggcccagc cccattgccg caccaacaag caatgtgcgc gtacagttca
     4141 ctcgaaaagc tgaagccacg atgagatttt cccttagttc ccgatatttg ccattgctaa
     4201 tgcccgctta acgcaggctt agcggctcac ccctttaagg gcgatatgaa gcgcgaaggt
     4261 gcttcccttc cggaaggtcc caatcacctc atagtcgcgc cgccagctga cgccaaggtc
     4321 caggcaatcg tcggaatatt cgattccgag gcggttacgc acgaactgga atccgttggc
     4381 ggtggaaagg ggatcctctc tcttgttggt aagatcgatg acggttgcgc caaacaccga
     4441 ccaatgacgg cgcacgagga tgcgtccagc gacttgaagc tcttcatggt tgctcaagtc
     4501 ttcgatgctc gggtcgatgt tgcggttgag cttgaggtag ccgacctgcg cgtacgt
//
LOCUS       DASRBJ010000078        10899 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_671928,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000078 DASRBJ010000000
VERSION     DASRBJ010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 10899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10899
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_671928"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..417)
                     /locus_tag="VE968_02230"
     CDS             complement(<1..417)
                     /locus_tag="VE968_02230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008832647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HZU50674.1"
                     /translation="MAEFTLPKNSKITRGREWKAEEGKRLKTFKVYRYDPDSGANPRF
                     DRYTIDLDKCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNMEGRNGLACTTA
                     IEDLKGDIQVTPLPHMEVVKDLVPDLTHVYAQYSLIQ"
     gene            complement(521..913)
                     /locus_tag="VE968_02235"
     CDS             complement(521..913)
                     /locus_tag="VE968_02235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50675.1"
                     /translation="MKNVALLCGAAALALGASLSAKPGNGNGHGQGHSNVHEASRGSQ
                     GFGAGGCPPGLRKKGCMPPGQAKKLARGERYESGYGAPYSYGRIPAELRRRYRLSSRY
                     RYYYDNGTIYAVDPRTLVIAQVISALAR"
     gene            complement(1015..1356)
                     /locus_tag="VE968_02240"
     CDS             complement(1015..1356)
                     /locus_tag="VE968_02240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50676.1"
                     /translation="MKGMSLAGAAVAVAATTVSASAQPYVNHGVCEQWRHGACVSWHG
                     LHDHPPRRSEFGVGYDFGPNHTYVDVGHLPPSVVARNHLDPAFRYVNENGRLYVVNPR
                     SFRVVRVININ"
     gene            complement(1506..1835)
                     /locus_tag="VE968_02245"
     CDS             complement(1506..1835)
                     /locus_tag="VE968_02245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50677.1"
                     /translation="MRKLVFALSSAALALAATASPAPAKTYVCTKWDNGVCVSTHRVK
                     GAPPYAVGYVFGPNYSYTTLSDIPQPVTTYYKLGPDKRYVYSDGYLYEVDPATYAVTQ
                     VIDTYSH"
     gene            2043..3020
                     /gene="mdh"
                     /locus_tag="VE968_02250"
     CDS             2043..3020
                     /gene="mdh"
                     /locus_tag="VE968_02250"
                     /EC_number="1.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HZU50678.1"
                     /translation="MARKKIALIGAGMIGGTLAHLAAMRELGDIVLFDIAEGIPEGKA
                     LDIAQAGPVDDFDVKLKGTSDYSDIAGADVCIVTAGVARKPGMSRDDLLGINLKVMKS
                     VGEGIRNHAPQSFVICITNPLDAMVWALREFSGLPPQKVVGMAGVLDSARFRHFLADE
                     FDVSVEDVTAFVLGGHGDTMVPVVQYSTVAGIPVPDLIKMGWTTQERIDAIVKRTRGG
                     GGEIVALLKSGSAYYAPATSAIAMAESYLKDKKRVLPCAAHLTGQYGVNDLYVGVPVV
                     IGAKGVERIVEIELDTQARQNFEVSVDAVRELLEACKKIDNSLVQEVAA"
     gene            3017..3904
                     /gene="sucD"
                     /locus_tag="VE968_02255"
     CDS             3017..3904
                     /gene="sucD"
                     /locus_tag="VE968_02255"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007684281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HZU50679.1"
                     /translation="MSILVDKRTRVITQGMTGETGTFHTQQALAYGTQMVGGVTPGKG
                     GSTHLGLPVFDTVHEAVAQTGATASVIYVPPPFAADSILEAIDAKVPLIVAITEGIPV
                     LDMVKVKRALSGSKSRLIGPNCPGVLTPDECKIGIMPGNIFKKGSVGVVSRSGTLTYE
                     AVFQTTNEGLGQTTAVGIGGDPVKGTEFIDILEMFLADDDTKSIIMIGEIGGSAEEDA
                     AQFIADEAKRGRKKPIVGFIAGRTAPPGRRMGHAGAIVSGGKGDAESKIAAMEAAGIT
                     VSPSPSELGTTLKELLVSA"
     gene            3946..6765
                     /locus_tag="VE968_02260"
     CDS             3946..6765
                     /locus_tag="VE968_02260"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HZU50680.1"
                     /translation="MAGIEERESGPSWARHNWPISELDDLNLGLDPTQATIDKVKAAV
                     ASRAAETTSDPQAIRRAAEDSIRAMMLIRTYRVRGHLAADLDPLHLTPRDVPADLTAE
                     YHGFTDQDLDRPIWLCGVLGFEQATVREIVAVLQRNYCGHVGLEYMHINEVSERRFLQ
                     DRMEGKDAEITFTPEGKQSILAKVIHAEQWEKFLARKYVGTKRFGLDGGESAVPALEA
                     VIKYGGQMGVTEIDVGMAHRGRLNVLSNVMGKPAQAIFHEFAGGATNPADVGGSGDVK
                     YHLGTSSDREFDGNKVHLSLLPNPSHLEAVDPVVLGKARAVQTIRDDKHGKTVLPILL
                     HGDAAFAGQGVVWECLSFSGLPGYGTGGTIHFIINNQVGFTTSPQFGRSSPYPSDVAK
                     GIQAPILHVNGDDPEAVTFCCKLATEFRQTFGRDIVIDMWCYRRFGHNEGDEPSFTQP
                     LMYAAIKTHPPISEIYGKKLVSEGVVDENWIAEQTKQYTAHLEEQFQSALSYLPNKAD
                     WFEGRWAGLGRPEEPVLGRRNIATAISEQEVQRLGDILTTVPEDFVVHKTLQRILDAK
                     KAMFASGEGFDWSTAEALAFGSLLAENHGVRLSGQDSGRGTFSQRHAVWVDQRTGNKY
                     VPLTSVGPGRFEVRDSPLSEFGVLGFEYGYSLADPKTLVLWEAQFGDFANGAQSIIDQ
                     FVTAGEAKWLRASGLVMLLPHGFEGQGPEHSSARLERYLQLCAEDNIQVANCTTPANY
                     FHILRRQMRRDFRKPLVMMTPKSLLRHKLAVSSIADFVGDSHFRRILSDLNPPAEGET
                     RRLVLCSGKLSYELMEARDAAGDLGVEVVRIEQLYPFPSEPLIKRLRAMPNLTDLVWA
                     QEEPKNNGAWHFVEDLLEKCLNEAGHQGMRAQYAGRDASASPATGLAKRHAAEQAALI
                     AAALGHDSTSGGKAATERPGAVAAE"
     gene            6775..8091
                     /gene="odhB"
                     /locus_tag="VE968_02265"
     CDS             6775..8091
                     /gene="odhB"
                     /locus_tag="VE968_02265"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017182656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045252 - oxoglutarate dehydrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0004149 - dihydrolipoyllysine-residue
                     succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HZU50681.1"
                     /translation="MATDVEVPALGESITEGTLAQWLKKPGEAVDADEPIASLETDKV
                     SVEVPSPVAGVLSEQLVNEGDTVAVGAIIARIDDKATASVSPPPSPAQSAAASTTNPA
                     GAGETPLLRGDEHAPDAVGSEAMVAEDHVTTLSPAVRRAVLEYHVDPSSIRGTGKDGR
                     LTKDDVIAAAQAQSRRAPEARAPASEPSTRAAPSPEQGKSSQAIGERREERVKMTRLR
                     QTIARRLKEAQNSAAMLTTFNDVDMSAVIEARARYKDLFEKKHGIRLGFMGFFVKACA
                     LAARDVPSVNASIDGDEIVYRDYLDVSVAVSAPKGLVVPVVRSADRMSFADIEKKIAD
                     FGKRAKEGTLTVDEMQGGTFTISNGGVFGSLLSTPIINPPQSAVLGMHRIEERPVVKD
                     GAIVARPMMYLALSYDHRLIDGREAVTFLVRVKEAIEDPTRLLIDL"
     gene            complement(8103..9053)
                     /locus_tag="VE968_02270"
     CDS             complement(8103..9053)
                     /locus_tag="VE968_02270"
                     /inference="COORDINATES: protein motif:HMM:NF014715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004340 - glucokinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005536 - glucose binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0051156 - glucose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HZU50682.1"
                     /translation="MSSPAVPGVRPWLVIEASAQGRLRFALVEPSLRPRIASVHELSI
                     EGIPTFTDALQQFERNRKVSVGGLNCALAIAGAASGETISLVRSRWTISRTGLHAFFG
                     TPPFILNDVAARAWATRSGSANIATLRGIGAPAFDHAGRYGMIMIEEGVGAAIVDLDR
                     DAGVRVLETEAGHMDFQPVTAAEERLAKAVRGPCATTTWEMILMLERFDARWATACPE
                     LAERERQAFQSALLGRFAVNLIHAFGAWDGIMFTGTRAARMLEGANRSSFDAAFTTRR
                     NFGRLIMAAHAWRVDQHEAVLAGAAERLAHEFRPALSAAA"
     gene            9177..10574
                     /gene="lpdA"
                     /locus_tag="VE968_02275"
     CDS             9177..10574
                     /gene="lpdA"
                     /locus_tag="VE968_02275"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006954650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HZU50683.1"
                     /translation="MAEGYDVDVLVIGSGPGGYVAAIRAAQLGLKTACAESRATLGGT
                     CLNVGCIPSKALLHASELFEEAAHGTLAKWGIKTTGVDVDLDTMHASRKEAVKGLTQG
                     IEFLFKKNKVEWLKGVATFESADTVKVGERTVKARNIVIATGSSVTPLPGVAVDQDRI
                     VDSTGALELPRVPKHLVVIGGGVIGLELGSVWRRLGANVTVVEFLDQILPGFDGEVRK
                     EANKIFKKQGFEFRLSTKVTKAEAATDGVTLTVEPAAGGKEETIEADIVLVSIGRRPN
                     TEGLGLEKAGLKLNQRGQIETDQQFRTAVPGIWAIGDVIPGPMLAHKAEDEGIAVAEN
                     IAGLTGIVNHDVIPSVVYTMPEIAGVGLTEEEARKSGDVKVGKFPMLANSRAKTNRET
                     DGFVKVVADAKTDRVLGVWMIASVAGTMIAQAAQAMEFGATSEDIAYTCHAHPTHNEA
                     LKEAAMAVQGKPIHI"
     gene            complement(10699..>10899)
                     /locus_tag="VE968_02280"
     CDS             complement(10699..>10899)
                     /locus_tag="VE968_02280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50684.1"
                     /translation="AAPSDAYSVLAREPREQLASALFEVRAILKGPSIQARCLECPPV
                     APAPEISREDLTFLELLRNLFG"
BASE COUNT         2293 a         3190 c         3333 g         2083 t
ORIGIN      
        1 ttggatcaat gaatattgcg cgtagacgtg cgtgaggtct gggacgagat ccttgacgac
       61 ttccatgtgt ggcagtgggg tgacttgaat gtcgcccttg aggtcctcga tcgctgttgt
      121 acaggcaaga ccgtttcgcc cctccatatt catcgcgcag gatccgcaaa tgccttctcg
      181 gcaggagcga cggaacgtca gagtcggatc aatttcgttc ttgatcttga tcagcgcgtc
      241 gagaaccatg ggcccgcatt tatcgaggtc gatcgtgtag cgatcgaagc ggggatttgc
      301 gccgctgtcg gggtcgtatc gatacacttt gaaggtcttg agacgcttgc cctcctcggc
      361 cttccactcg cgacccctgg tgatcttgct attctttgga agcgtgaatt cggccacgca
      421 ctaactcctt cgcttggacg gcccgctagc acgcgcaccg catcgaagaa aaggccagtg
      481 cgtattcgcg cgcgtgctca ctgctccgca gtcagccggg ctagcgcgca agcgcactga
      541 tgacctgcgc gatgaccagt gtgcgtgggt cgacggcgta tattgttcca ttgtcgtaat
      601 agtaacggta gcgcgaactt agccggtagc gacgccgcag ctccgcggga attcgcccgt
      661 aggagtatgg cgctccataa ccgctctcgt agcgttcgcc gcgggcgagt ttcttcgcct
      721 ggcctggcgg catgcagccc ttcttgcgca agcccggcgg acagccacca gcgccaaagc
      781 cctgcgatcc acggcttgct tcgtgaacat tggaatgacc ttggccatga ccgttgccgt
      841 tgccgggttt ggcgctcaag gaagcgccga gcgccaaggc cgccgcgccg cacaaaagag
      901 cgacattttt catggatctg tccttatgct tgttatgcca tttgggaaga acgctcccgc
      961 gcgagcaagg aacgcaggcc atgcccaaga gctccgcgcg tgacgggatc tcgatcagtt
     1021 gatgttgatg actctcacca ctcggaaact gcgcggattg acgacataga ggcgcccgtt
     1081 ttcattcacg tatcgaaagg ccggatcgag gtggttacgc gcaacgaccg agggcggcag
     1141 gtgaccgaca tccacatagg tgtggttcgg cccaaagtca tagccgacgc caaattcact
     1201 tcgacgtggt ggatggtcgt gtaagccgtg ccacgagaca catgcgccgt gccgccattg
     1261 ctcgcagaca ccgtgattga cgtacggctg cgcagaagcg gaaacggtgg ttgccgcgac
     1321 cgctactgcc gcaccggcca gggacatgcc tttcatctta atctcctcgc gaaaggcgtt
     1381 cacgtgagtg gagtatcaat ttgcaggcgc tttgcttctc aagccgtcgc agcaggatag
     1441 ggctcacctc gttcaatagc cgaggggctg tcgtggctga cagcccctcg ctttgtgcgt
     1501 agaaattagt gactataggt gtcgatcact tgcgtcaccg cataggtcgc aggatcgacc
     1561 tcgtagagat agccatccga ataaacatag cgtttatcgg ggccgagctt gtaataggtg
     1621 gttaccggct gcgggatatc gctaagcgtc gtgtatgaat agtttggccc gaagacatag
     1681 ccgaccgcat aaggcggggc acctttcact cggtgcgtcg acacgcaaac gccattatcc
     1741 cacttggtgc acacgtaggt tttcgctggc gccggcgaag ccgtcgccgc caaagccagg
     1801 gcagcactcg agagtgcgaa gacaagtttc ctcatcagtt tctccttccg tgcagttttc
     1861 gggggctgcg gcggtgtaac gattggcgct agtgacggtt tcccgacact ttgttcgaaa
     1921 gccgtcctcg attgaagctg gcgacgagcg gttgcccgac tccgcgcggc ggtctagagc
     1981 gccgccaact tcgtggcgtc cggtcctcgg agcgcccaca aacagcagag gaaagcagcc
     2041 tcatggctcg gaagaaaatt gcgctgatcg gcgccggaat gatcggcgga acgctcgctc
     2101 accttgcggc aatgcgcgag ctcggcgaca tcgtcctgtt cgacatcgcg gaaggaattc
     2161 cggagggaaa ggcgctcgac atcgcgcagg ccggcccggt cgacgacttt gatgttaagc
     2221 tcaaaggtac gtcggactat tcggacatcg ctggtgccga cgtatgcatc gtcacggctg
     2281 gcgtcgcgcg taagccgggt atgagccgcg atgacctcct cggcatcaac ctcaaggtca
     2341 tgaagtccgt cggcgaaggt attcgcaatc atgcgcctca aagcttcgtc atctgcatca
     2401 ctaatccact cgacgcgatg gtttgggcgc tgcgtgagtt ttcaggtctc ccaccgcaga
     2461 aggtggtcgg aatggcgggc gtgctcgaca gtgctcgttt ccgccacttc ctcgccgacg
     2521 aattcgacgt gagcgtcgaa gacgtaaccg catttgtgct tggcgggcat ggcgatacga
     2581 tggttcccgt cgtccaatat tcgaccgttg cgggaatccc tgtacccgac cttatcaaga
     2641 tgggatggac gacgcaggag aggatcgatg cgatcgtcaa gcgcacgcgc gggggcggcg
     2701 gagagatcgt tgccctattg aagtccggct cggcttatta tgctcccgcg acgagtgcga
     2761 tcgcaatggc cgagagctac ctcaaggaca agaagagagt gctgccgtgc gccgcgcatc
     2821 tcactggtca atatggagtg aatgatctct acgtcggcgt gccggtcgtg atcggcgcaa
     2881 agggcgtcga gcgaatcgtc gagatcgaac tcgacaccca ggctcgccag aatttcgaag
     2941 tcagtgttga tgcggtcagg gagctacttg aagcctgcaa gaagatcgac aacagccttg
     3001 tgcaggaagt tgctgcgtga gcatccttgt cgacaagcgg acgcgtgtga tcacgcaggg
     3061 aatgacgggt gaaacaggta cattccacac ccagcaagcg ctcgcctatg gcacgcagat
     3121 ggtcggcgga gtgacgcctg gtaaaggcgg ctccactcat cttggtttac ccgtattcga
     3181 taccgttcac gaggctgtcg cacagactgg cgcaaccgcc tcggtgatct acgttccgcc
     3241 gcccttcgcc gccgactcaa ttctcgaggc gattgacgcg aaggtgccgc ttatcgtcgc
     3301 gataaccgaa ggcattccag ttctcgacat ggtcaaggtg aagcgggcac tgtcgggctc
     3361 caagtcgcgc ttgatcggac caaactgccc cggcgtactt actcccgacg agtgcaagat
     3421 tggcatcatg cccggcaata tcttcaagaa gggcagtgtc ggcgttgtca gcaggtcagg
     3481 aacgcttacc tacgaggccg tttttcaaac taccaacgag gggcttggac aaacgactgc
     3541 cgttggcatc ggtggggatc ccgtcaaggg aacagaattc atcgatatcc tcgaaatgtt
     3601 ccttgctgat gatgacacca agtcgatcat catgatcggt gaaatcggtg gcagcgccga
     3661 ggaagacgcc gcgcaattca tcgcggacga ggccaagcgc ggacgcaaga agcccatcgt
     3721 cggcttcatt gccggacgca ctgcaccgcc aggtcggcgc atgggccatg cgggtgcgat
     3781 cgtctcggga ggcaagggtg atgccgaaag caagatcgcg gccatggagg cagctggaat
     3841 taccgtctct ccaagcccat ctgagctcgg cacgactctg aaggaattgt tggtatccgc
     3901 gtagccccgg acggcagccc gggccaggag aatgaattga acgacatggc gggaattgag
     3961 gaacgcgagt cgggtccgag ctgggcgagg cacaactggc ctatctctga actcgacgac
     4021 ctcaacctcg gtctcgatcc gacgcaagcg acgatcgaca aagtaaaggc agctgtcgca
     4081 agccgggcgg ccgaaacgac gagcgaccct caggccatcc ggcgagcggc cgaggattcg
     4141 ataagagcca tgatgctgat ccgcacctac cgggtgcgcg ggcatctcgc tgccgacctc
     4201 gatccgctgc atcttacacc acgcgacgtt ccggccgatc tcaccgccga atatcatggc
     4261 tttaccgacc aggacctcga tcggccgatc tggctttgcg gcgttctcgg ctttgaacag
     4321 gcaaccgtgc gcgagatcgt ggccgtcttg cagcgcaatt actgcggtca tgtcggcctt
     4381 gaatatatgc acattaatga ggtctcggag cgtcgttttc tccaggaccg catggaaggc
     4441 aaggatgcgg aaatcacctt cacgcccgag ggcaagcaat caattcttgc caaggtcatc
     4501 cacgccgaac agtgggagaa gttcctcgcc cgcaaatatg tggggacgaa acggtttgga
     4561 ctagacggcg gcgaaagtgc ggttcctgcc cttgaggcgg tgatcaaata tggcggccag
     4621 atgggcgtca ccgagatcga cgtcggaatg gcgcaccgcg gccgtttgaa cgttctttcg
     4681 aacgtcatgg gaaaacccgc ccaagcgata ttccatgagt ttgccggcgg cgcgacaaat
     4741 ccggcggacg tcggcgggtc aggcgacgtc aaataccacc ttggtacttc ctctgatcgc
     4801 gagtttgacg gcaacaaggt ccatctgtcg cttcttccca acccctcgca tctcgaagcg
     4861 gtcgatccgg tcgtcctcgg taaggcgcgc gcggtacaga ccatccgcga cgataagcac
     4921 ggcaaaacgg tacttccgat ccttctgcat ggcgatgcgg cctttgcggg tcagggtgtc
     4981 gtttgggagt gcctcagctt ttctggactt ccgggatacg gaaccggcgg cacgatccac
     5041 ttcatcatca acaaccaggt cgggtttacg accagccccc aatttggtcg ttcatcgcct
     5101 tatccctccg acgtcgcgaa gggcattcag gcgcccattt tgcacgtcaa cggcgacgac
     5161 ccggaagcgg tcacattctg ctgcaagctc gcaacggagt tcaggcagac gttcggccgc
     5221 gacatcgtca tcgacatgtg gtgctatcgc cgcttcggcc ataacgaggg cgacgagccg
     5281 agcttcaccc agccgctcat gtatgcggca atcaagacgc atccaccaat cagcgagatc
     5341 tacggcaaga agctagtcag cgaaggtgtc gttgacgaga actggatagc cgaacagacc
     5401 aagcaatata cggcccatct cgaggagcag ttccagtcgg cgctctctta cctcccgaac
     5461 aaggccgatt ggttcgaagg ccgctgggca ggtctcggac ggcccgaaga acctgtcctt
     5521 ggccgccgca acatcgcgac ggccatcagc gaacaggagg tacagcgtct tggcgatatc
     5581 ctgacgaccg tcccggaaga tttcgtcgtt cacaagacgc tgcagcggat tctcgatgcg
     5641 aagaaggcca tgttcgcaag cggcgagggg ttcgactggt caacggcgga agccttggca
     5701 ttcggaagtc tccttgccga aaaccacggt gttcgattgt cgggacaaga tagcggccgg
     5761 ggcacgttca gccagcgtca cgccgtctgg gtcgatcagc ggacagggaa caaatatgtt
     5821 ccactgacaa gcgttggacc cgggcgcttt gaagttcgcg atagtccctt gtcggagttc
     5881 ggagtcctcg gcttcgaata cggatattca ctcgccgatc cgaaaaccct cgtgctctgg
     5941 gaagcccagt tcggggattt tgcaaacggc gcccagagta tcatcgacca gttcgtcacc
     6001 gccggtgaag caaagtggct ccgcgcaagc ggcctcgtca tgctccttcc ccacggattt
     6061 gaagggcagg gaccagagca cagctccgcc cgtcttgagc gctacctgca actgtgcgca
     6121 gaagacaaca tacaggtcgc gaactgcacg acgccggcga attacttcca tatcctgcgc
     6181 cggcagatgc gccgtgactt ccgcaagcct ctcgtgatga tgactcccaa gtctttgctg
     6241 aggcataagc ttgcggtttc gagcattgcc gatttcgtcg gcgacagtca cttcagacgc
     6301 attctctccg atctaaatcc tcctgccgaa ggggaaacac ggcgcctggt gctctgctcg
     6361 ggcaagttat cctatgagct gatggaagcg cgggacgcgg caggggacct tggcgttgaa
     6421 gtggtgcgga tcgagcagct ctatccgttt ccatccgaac cgttgatcaa gcgcctgagg
     6481 gcaatgccca atctcaccga tctcgtttgg gcgcaggaag aaccaaaaaa taacggcgct
     6541 tggcacttcg tcgaggatct tctcgaaaag tgcctcaacg aggcgggaca ccagggaatg
     6601 cgcgcgcaat atgctggtcg tgacgcaagc gcatcccccg cgaccgggct ggcgaagcgc
     6661 catgctgcgg agcaggccgc gctcatcgct gcagcacttg gacatgattc aaccagcggc
     6721 ggaaaagccg cgactgaacg gcctggagcc gtcgcagcag aataaaggga agcaatggcc
     6781 accgacgttg aagtccccgc gcttggggaa tccatcactg aaggaactct cgcgcaatgg
     6841 ctcaagaagc ccggcgaagc ggtcgatgcc gacgagccga ttgcaagcct cgagaccgac
     6901 aaggtaagtg tcgaagtgcc ctcgccggtc gccggggtac ttagcgagca attggtcaac
     6961 gagggcgata cggtcgccgt cggcgccatt atcgcgcgca ttgatgacaa ggcgacggcg
     7021 agtgtttcac caccgccaag tcccgcgcag agcgctgctg catccaccac gaacccggca
     7081 ggcgcgggcg aaacaccact gttacgcggc gacgagcatg cgccggatgc cgtcggaagc
     7141 gaagcgatgg tggctgagga ccacgtcacg accctctctc ccgcggtccg ccgcgccgtt
     7201 ctcgaatacc atgtcgatcc gagcagcatc cgcgggaccg ggaaagatgg acgacttacg
     7261 aaggacgatg tgatcgccgc tgcgcaagcg cagagtcggc gcgcgcccga ggcaagagct
     7321 ccggcctccg agccttcgac aagagcagcg ccttcgccgg agcaaggcaa atcttctcaa
     7381 gcaatcggcg agcgtcgcga ggagcgcgtg aagatgacgc gtcttcgcca aacgatcgcg
     7441 cgccgactga aggaggccca gaatagcgct gcgatgctca cgacgttcaa cgacgtcgac
     7501 atgagcgcag tcatcgaggc gagggcacga tacaaggact tgtttgaaaa gaagcatggc
     7561 atccgccttg ggttcatggg cttcttcgtc aaagcctgtg cgcttgctgc acgggacgtg
     7621 ccctccgtta acgcaagcat tgacggcgac gaaattgtct accgcgacta tctcgatgtc
     7681 tcggtcgccg tttccgcgcc caagggtctc gtcgttccgg tcgttcgcag tgctgaccgc
     7741 atgagctttg cggacattga aaagaagatc gcggacttcg ggaagcgcgc caaagaggga
     7801 acgctgacgg tcgacgagat gcagggtggc accttcacca tctcgaatgg cggggtcttc
     7861 ggttccttgc tctcgacacc aattatcaac ccgccgcagt cggcagtact tggcatgcat
     7921 cgaatagagg aacggccggt agtcaaggat ggcgctatcg ttgctcgtcc gatgatgtac
     7981 cttgcgctga gctacgatca ccggctgatc gatggccgcg aggcagtcac attcctggtg
     8041 cgcgtaaagg aagcgatcga ggacccgacg cgacttctga tcgacctata ggttcagttc
     8101 attcaagcag ccgcgctgag cgccgggcga aactcatggg cgaggcgctc ggctgctccc
     8161 gccaagaccg cttcatgctg atcgacgcgc caagcgtgcg ctgccattat gagacgaccg
     8221 aaattgcggc gcgttgtgaa cgctgcatcg aagctcgacc gattggcccc ctcgagcatg
     8281 cgggctgctc gcgttcccgt gaacatgatc ccgtcccatg cgccgaaagc atggatgagg
     8341 ttcacggcga agcggccaag aagcgctgat tgaaacgcct gccgctcgcg ctcggcgagc
     8401 tctgggcatg cagttgccca ccgcgcgtcg aaacgctcga gcatcagaat catttcccac
     8461 gtggttgtcg cgcatgggcc acgaaccgct tttgcgagtc gctcttcagc cgcggtgaca
     8521 ggctggaagt ccatgtgccc agcttcggtc tcaagaacgc gcactcctgc gtctcgatcg
     8581 aggtcaacga tcgctgctcc gacaccttcc tcaatcatga tcatcccgta gcgcccagca
     8641 tgatcgaaag ccggagcgcc aatgccccga agagtggcga tgtttgcgct tccggagcgg
     8701 gttgcccaag cccgagccgc gacatcgttc agaatgaatg gcggtgttcc gaagaatgca
     8761 tgaagccccg ttcgactgat cgtccaacgc gagcggacca aggaaatcgt ctcgccgctc
     8821 gcggctccgg cgatcgcgag cgcgcagttc aacccaccaa ccgagacctt tctgttgcgc
     8881 tcgaattgtt ggagcgcatc ggtgaaggtc gggatgccct cgatcgaaag ctcatggacg
     8941 ctcgcgatcc gtgggcgcag cgagggttca acgagcgcga aacggagtcg gccctgggcc
     9001 gatgcctcga tcacgagcca cgggcgaacg cccggaactg ctggactcga catgctgctt
     9061 actctcccca tgatagcgct accataactg ggttaacccg ccgttacggt tctgagcttg
     9121 cgggctgccc aagccactcc taagtcgccg atcaaatcca atcagcggag tgattgatgg
     9181 ccgagggcta tgatgttgac gtacttgtga ttggctcggg gcccggtggc tatgttgccg
     9241 cgatccgcgc ggcgcaactt ggcctcaaga ccgcctgtgc ggagagccgg gcaactcttg
     9301 gtggcacatg ccttaacgtc ggctgcatcc cctcgaaggc acttctgcat gcatccgagc
     9361 ttttcgagga agcggcccat ggtacgcttg ccaagtgggg catcaagacg accggcgtcg
     9421 acgtcgacct cgacacgatg cacgcgagcc gcaaggaggc cgtgaaaggc cttacccagg
     9481 gcatcgagtt tctcttcaag aagaacaagg tcgagtggct gaaaggcgtt gcgactttcg
     9541 agagcgcaga caccgtcaag gtcggcgagc gcacggtgaa ggcaaggaat attgtgatcg
     9601 cgacggggtc atcggtaacg ccgcttcccg gtgtggctgt tgaccaagac cgaatcgttg
     9661 attcgaccgg agcacttgag ctcccgcgcg ttccaaaaca cctcgtcgtg atcggtggcg
     9721 gcgtaatcgg ccttgaactt ggctctgtct ggcgccggct cggcgcgaac gtcacggtgg
     9781 tcgaattcct cgaccagatc ctgccaggat tcgatggcga ggttcgcaag gaagcgaaca
     9841 agattttcaa gaagcaaggg ttcgaattcc ggctgtcgac caaggtgacc aaggccgaag
     9901 ctgccacgga cggtgtgacg cttaccgtcg agcccgcagc aggcggcaag gaagagacga
     9961 tcgaagccga tatcgtccta gtttcaattg gtcggcgtcc gaacacggaa gggcttggcc
    10021 tcgagaaggc tgggctcaag ctcaatcaga ggggccagat cgagacggat cagcaattca
    10081 ggacagcagt tcccgggatc tgggcaatcg gcgatgtcat tccggggcca atgcttgcgc
    10141 acaaggccga agacgaggga attgcggttg ccgagaatat cgccgggctc accggcatcg
    10201 tgaaccacga cgtgatccca tccgtggttt acaccatgcc ggagatcgcc ggcgttggac
    10261 tgacggagga agaggcgcgc aagagcggcg acgtcaaagt tggcaaattc ccgatgcttg
    10321 cgaacagccg cgcgaagacg aaccgtgaga ccgatggctt cgtcaaagtg gtcgccgacg
    10381 ccaagacgga ccgcgtgcta ggcgtgtgga tgattgcatc ggttgctggc acgatgatcg
    10441 cccaggcagc gcaagcgatg gaatttggcg cgacgagcga ggatattgcc tatacgtgcc
    10501 acgctcaccc gacgcacaac gaggcgctca aggaagcggc gatggccgtg caaggaaaac
    10561 ccatccacat ctgaatcgga tcgagcgtta tgcgagcgaa ccttggcggt tggcctcggt
    10621 aacgcgccgc cgacttcgaa ccgaggtcaa caatgcgcct aaacgccgct ctcgagtgca
    10681 atcggcgcgg ctcaaggtct agccgaagag attcctgagc agctccagaa aggtaaggtc
    10741 ctctcggcta atctcgggcg ctggagcaac tggcgggcac tcgaggcagc gggcctgaat
    10801 gcttggcccc ttaaggatcg cgcgcacttc gaagagggca ctcgctagct gctcccgtgg
    10861 ctcccgggcg agtacggaat aggcatcgct cggcgcggc
//
LOCUS       DASRBJ010000079         3649 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_159974,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000079 DASRBJ010000000
VERSION     DASRBJ010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3649
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159974"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..196
                     /locus_tag="VE968_02285"
                     /pseudo
     CDS             1..196
                     /locus_tag="VE968_02285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207726.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="cold-shock protein"
     gene            complement(307..468)
                     /locus_tag="VE968_02290"
     CDS             complement(307..468)
                     /locus_tag="VE968_02290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50685.1"
                     /translation="MIFDAQPFAALCLVRESGPGSFGPAAALAHMVERCRFRLKPRLF
                     SAGEEELQV"
     gene            982..1206
                     /locus_tag="VE968_02295"
     CDS             982..1206
                     /locus_tag="VE968_02295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007677077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50686.1"
                     /translation="MSRVVHLNLDEGVVVIRCMSENVGVSAIERLSSGGVRLVCTSSE
                     GADRMRQKLKAYVIAGTVTRERHRPPNPLW"
     gene            complement(1213..1938)
                     /locus_tag="VE968_02300"
     CDS             complement(1213..1938)
                     /locus_tag="VE968_02300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HZU50687.1"
                     /translation="MTDASLLGALFRRWKRRLRLSEEDEAAVVNLTWARKQYQRDAYL
                     TREGEHVKACTVLLQGFAYRQKVLSDGSRQIISFHIPGEFLDIQNCLLEVADHNVQAL
                     TRCLVAIVPKELLLQVMSARPAVRQAIWLDSLLDASVFREWVVNVGRRDAKQRIAHLL
                     CELALRMEAAGLGHKPLFDFPLTQEQLADATGLTAVHTNRTLQALRKSGLIALTASKL
                     TIPDWDALAEAGDFSERYLHHSV"
     gene            complement(2034..2774)
                     /locus_tag="VE968_02305"
     CDS             complement(2034..2774)
                     /locus_tag="VE968_02305"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HZU50688.1"
                     /translation="MNAPHETALQLLARKLNLHHRLSDADQLAILGLPHKIRRLEAQS
                     YILREGDRPDRCAVLLEGYAFRHKLTGEGARQILAINIPGEALDFQNLFLEEADHNVQ
                     MLSRGIIADVQREAIEALIAEHSEIGRAILITTLVEASIFREWVVNIGQRDSRSRIAH
                     LLCEFAYRLNAQALNTSAVYELPITQEQLADATGLTPVHVNRVLQALQREGLIERDRR
                     MIRFPSWERMRDVADFNPRYLHTVDLAS"
     gene            3028..3276
                     /locus_tag="VE968_02310"
     CDS             3028..3276
                     /locus_tag="VE968_02310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50689.1"
                     /translation="MPRYFMHLRDGTDELLDSEGVELEGLEAVRQKVMTAARDVLAGD
                     LRNGVVDLRYRIDAENEGGAIVYTLAFKHAFSIIPEAA"
     gene            complement(3452..>3649)
                     /locus_tag="VE968_02315"
     CDS             complement(3452..>3649)
                     /locus_tag="VE968_02315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50690.1"
                     /translation="GVVVSAENWHEERDRLIELLAAIESGKVTHIDEADLRQLQPTNP
                     ENIAFLRERLARLNARLGDES"
BASE COUNT          752 a         1107 c         1113 g          677 t
ORIGIN      
        1 aaccgtaaag ttcttcaacg aatccaaagg ctacggcttc atcgcacccg atggcggcgg
       61 caatgacgcc tttgttcacg ttaccgccgt cgagcgggct ggaatgcgca gccttcgcga
      121 gaaccagcgc attagctacg acatcgagca ggacaatcgc ggcaagatga gcgccgtcaa
      181 tctgaacgcc gaagagtcga cacagccgga agcgagcgaa gctcagcccg cgaccgacga
      241 gctccagtct gagcacgcga atgaccgaca gggcgaatag ccttggcagg gccgatcgtc
      301 cgcagctcaa acctgcaatt cttcctcgcc cgcgctgaac aagcgcggct tgaggcggaa
      361 gcggcaacgc tcgaccatgt gcgcgagcgc tgccgccggt ccgaagctgc ctggtccgct
      421 ctcgcggaca aggcacagcg cggcgaacgg ctgcgcatcg aagatcaaaa gaggaaagcg
      481 gcggaagccg catcgatttt aaatgaagat gatattcaag aagaaccagc ccaaccgggc
      541 ttcccaacgt ccgagcgccg aacgccgcga atctgaaccg tcgtttcgac cgttcgacaa
      601 ggtggcatac gccgccgtgc ttgaaataat gggctaactt agttcgcgca tctgctcaga
      661 agctgctaca ggaaacgtat cgcgcggcaa tccgattgta ggcatttgcg cggctgagag
      721 acacggtgcg ctcccgctta cgacgacgga gccagcgttg gacgcccagc cacccactga
      781 aatttttccg gacaaccccg atggtgccgc gggcctgcgc aatcaggcgg ccgcatgtcg
      841 tcggcttgcc gcccgcgctc ggacgcacgc cggaaccagc tccatgaacg cgcttgcaga
      901 tcatttcgac gagcaggcgc ggagggctga tgcggccgag tcccccaaaa ctgccgaatc
      961 caccggtacg cggggcgtct cgtgagccgc gtcgtacacc tcaacctcga tgaaggcgtg
     1021 gtggtgatcc gctgcatgtc ggagaacgtc ggcgtatcgg cgatcgagcg cctatcaagc
     1081 ggcggcgtgc gcctcgtctg cacgagcagc gaaggtgcgg accggatgcg ccaaaagctc
     1141 aaagcttatg tgattgctgg cacggtcacg cgggaaaggc atcggccgcc aaatccgctt
     1201 tggtaggccg ccttaaacgg aatggtgcag gtagcgttcg ctgaaatcac cggcttcggc
     1261 gagggcgtcc cagtcgggga tcgtcagctt gctcgcggtt agagcgatca atccggactt
     1321 gcgcaaagcc tgcagcgtgc gattggtgtg aactgccgtc aatccggtcg cgtcggcaag
     1381 ctgttcctgc gttagcggga agtcgaacag aggtttatgg ccaaggccgg cggcctccat
     1441 tcgcagcgcg agttcgcaga gaagatgggc gatacgctgc ttggcatcac gcctgccgac
     1501 attcacgacc cattctcgaa agaccgatgc gtccagcaga gagtccagcc atatcgcttg
     1561 ccgcactgcc ggtcgcgcgc tcatcacctg cagcagcagc tcctttggca cgatggccac
     1621 cagacagcgc gtcagcgcct gcacattgtg gtcggcaacc tcgagcaggc agttctggat
     1681 gtccaggaat tcgcctggaa tgtggaacga gatgatctgc cgcgagccgt cgctcaggac
     1741 cttctggcgg tacgcgaatc cctgcagcag gaccgtgcag gctttcacgt gctcaccctc
     1801 gcgcgttaga tatgcgtcgc gctgatattg tttgcgagcc cacgtcaggt tgacgacggc
     1861 agcctcgtct tcctctgaaa gtcgcagccg ccgcttccac ctcctgaaaa gtgcaccgag
     1921 taaagaggcg tcggtcaatt cctgctccgc gtgagtttcg cagagctaac cttcaacgaa
     1981 ctgaggctct ctaatgaatg atagactccg ttcgcctgac ttatgttaga tactcatgat
     2041 gccaaatcga ccgtatggag gtagcgcggg ttgaagtccg cgacgtcgcg catccgctcc
     2101 cagctcggaa agcggatcat ccgccggtcc cgttcgatca gaccttcccg ctgcaacgcc
     2161 tgaagcacgc gatttacatg aacaggggtc aatccggtcg catcggcaag ctgttcctgg
     2221 gtgatcggca gctcgtacac tgcgctagtg ttcagcgcct gcgcattgag gcgataagcg
     2281 aactcgcaaa ggagatgcgc gatgcggctg cgggaatccc gctgcccgat gttcaccacc
     2341 cattcccgaa agatcgacgc ttcgaccagg gtcgtgatca ggatcgcccg cccaatttca
     2401 gagtgctctg caatgagagc ctcgatggct tcgcgctgga cgtcggcaat aatgccgcga
     2461 ctgagcatct gtacgttatg gtcagcctct tcgaggaaaa ggttctgaaa atccagcgct
     2521 tcgccgggaa tgttgatcgc gaggatctgc cgcgccccct caccggtcag cttgtgacga
     2581 aacgcatagc cctcgagcag cacggcgcat cggtcgggtc gatccccttc gcgcagaatg
     2641 tacgactgcg cttcaaggcg ccgaatcttg tgcggcaacc cgaggatcgc aagctgatct
     2701 gcgtcggaga ggcgatggtg caagttgagc ttgcgcgcca aaagctgaag ggccgtttca
     2761 tgaggcgcgt tcaagagagt ctcccgcggg ttgggggcgg gagcgcagat cctctctcag
     2821 tcgccaacgc ccacgtggta cgcggtcggc gatggcagca ctataacatc atggcgtttc
     2881 aacaaccaca cttatgtgag attgacgccg ataaacatgg ataaagtcta agcttttccg
     2941 tatagctacg gtatcgctga gtcggactac gaggcgctcg gcggctgaga gacgaacgcg
     3001 ctcccgcctt gtcggaggac gcgccgggtg cccaggtatt tcatgcattt gagggacggc
     3061 accgatgagc tgctcgattc cgaaggggtc gagctcgagg gcctcgaggc tgtccgccag
     3121 aaggtgatga cggctgcgcg agacgttctg gctggcgacc tgcgcaacgg agtcgtggac
     3181 ctccgctaca ggatcgacgc ggaaaacgaa ggcggtgcga tcgtctacac gctggcgttc
     3241 aagcacgcgt tcagcatcat cccggaggcg gcgtaatgtc gagctccgcc gaattgcgcc
     3301 ggcacgccga gcactgtcgc tacttggctg acctgaccgc gagcccccag gacaggcaag
     3361 tgcttcgtca atcggccgac gatttcgatg ctgaggcaaa gcgcgtcgac tgcttgcggc
     3421 gtgccgctac cgaacggcga aattcgaaaa actagctctc atcgccgagg cgcgcattca
     3481 gtctcgccag gcgctccctg aggaaggcaa tgttttcggg attggtcggc tgcagctgcc
     3541 gcaggtccgc ctcgtcgatg tgcgtcacct tgccggactc gatcgctgcg agaagttcaa
     3601 tgagccgatc tcgctcctcg tgccagttct ccgcgctcac gacgacgcc
//
LOCUS       DASRBJ010000080         4496 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_672411,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000080 DASRBJ010000000
VERSION     DASRBJ010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4496
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_672411"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..732)
                     /locus_tag="VE968_02320"
     CDS             complement(<1..732)
                     /locus_tag="VE968_02320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011445344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HZU50691.1"
                     /translation="MAARAIWRGQIRLALVSIPVELYPATKSGAQIQFHQVYEPTGQR
                     IQYEKVVPGIGPVDRDQIVKGYEVSKGHYVLLDQEEIDSVKLESRKTLDLVEFVDVGD
                     IDAMYYDKPYFVVPADDLAEEAYVVLRDALKASKKIGVGQLAMRGQEYVVALKPCGRG
                     MLLETLRYADEVHKAQSYFREIADQQPDADLLDMASMLIERKTGKFDPTEFHNRYVDA
                     LHRLIEEKQRAKGERIIEDPNAEAGP"
     gene            complement(760..1542)
                     /gene="trpA"
                     /locus_tag="VE968_02325"
     CDS             complement(760..1542)
                     /gene="trpA"
                     /locus_tag="VE968_02325"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HZU50692.1"
                     /translation="MSRYSSMFDRLGGDGALGAFVMLGDPDVERSARLLADVVDAGAD
                     MIEVGIPFSDPVADGPVIQAAAQRALTAGVRVDDCLELIAGFRARYREVPVGILTYAN
                     IVVARPGFARDAAEAGADSLLIADVPTLEAERFTRDMTQAGIEPVLIAAANTPERALQ
                     RVATLSKAYTYCVSRTGITGTHASGQFDKQLIERLKQAGAAPPIFGFGISKPEHVRDA
                     LRAGARGVICGSAIVDLATTGGDVRGFVQSLKAATRNESAAQ"
     gene            complement(1539..2702)
                     /gene="trpB"
                     /locus_tag="VE968_02330"
     CDS             complement(1539..2702)
                     /gene="trpB"
                     /locus_tag="VE968_02330"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HZU50693.1"
                     /translation="MRLDGRFGRFGGCYVPEILVPALEQLEVAFLDAQNDDSFRSELS
                     SLLKHYAGRPTPLTRCRNLPGNIYLKREDLLHGGAHKTNQVLGQGLLAKRMGKKRLIA
                     ETGAGQHGVATAIVGALLGFETVIYMGAEDVERQQLNVFRMQLMGARVIAVESGGRTL
                     KDAINEALRDWSASFQDTHYLLGTAAGPHPFPTMVREFQRIIGREARAQLIEQLGRLP
                     DAVVACVGGGSNAIGLFADFIDDADVRLVGVEAAGRGLDGEQHGATLRRGTPGILHGA
                     ETFVLQDSDGQIADTWSVSAGLDYPAVGPEHAHLKDSGRAQYVGVTDAQALSAFRALA
                     ESEGILCAFESAHAVAHALRLAEEEPHDAILVGLSGRGDKDVAQAQQLIGPSA"
     gene            complement(2693..4084)
                     /gene="trpCF"
                     /locus_tag="VE968_02335"
     CDS             complement(2693..4084)
                     /gene="trpCF"
                     /locus_tag="VE968_02335"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF006945.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0004640 - phosphoribosylanthranilate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HZU50694.1"
                     /translation="MTEAVGVLGKIAEAKREELRARYEGVSIEALRARAQPTDRSLAD
                     TLAQPGARFILEIKKASPSAGAIRPSADPAALARGYAGVADALSVLCDGPYFRGSLDD
                     LAAARREFDGPILAKDFFIDERQVPEARIAGADAVLVMLSLLDDDRARAIIGEAVRLR
                     MDPLVEVHDEAEMRRALALGARLIGINNRDLRDLSIDLSTTERLAALARERVLISESG
                     INDRTDIDRLSQLVDGFLIGSSLMRADEPAQAGRELIFGRTKICGINCGASLRAARPA
                     AFAGFVFVPGSPRHVTAQAALPLAGTARERGLHVVGVFRDSDRQDVVNCARMLDLDAV
                     QLHGREDRDYVRELRCQLPDGCEIWTAISVRRDFRDRLGGDRLLFDNGEGGTGQPFDW
                     SLVREHPRLACSILAGGIGPLNAREAADLGAYAIDVGSSVDEQPGRKSPEKIAKLFAA
                     LRPRSKRQVPACV"
     gene            complement(4077..>4496)
                     /locus_tag="VE968_02340"
     CDS             complement(4077..>4496)
                     /locus_tag="VE968_02340"
                     /inference="COORDINATES: protein motif:HMM:NF012800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HZU50695.1"
                     /translation="KMLRRIAQTLAALGVQEALVVHGSGLDEVALHGETRAIRLSGDH
                     VDELQITPEDAGIERAPLKVVTGGDVEENATRLRAVLQGRASGPEEDIVTLNTAALLL
                     TAGKAQSLEQAAQQARAALREGRAGEALERYVEASRD"
BASE COUNT          848 a         1430 c         1325 g          893 t
ORIGIN      
        1 cggaccggct tcggcattgg gatcctcgat gatccgttcc cccttcgcgc gctgcttttc
       61 ctcaatcaaa cggtgcagtg cgtcgacata gcggttgtgg aattcggtcg gatcgaactt
      121 gccggttttc cgttcgatca gcatcgaagc catgtcgagg agatcggcgt cgggctgctg
      181 gtccgcgatt tcacggaaat aggattgcgc cttgtgaacc tcgtcggcgt atcggagcgt
      241 ctcgagcagc atcccgcgac cgcaaggctt cagcgcaacg acatattcct ggccgcgcat
      301 tgcaagctgc cccaccccga ttttcttgga tgccttgagt gcatcacgga ggacgacata
      361 ggcttcttcg gcaagatcat cggcgggaac gacgaaataa ggcttgtcgt aatacattgc
      421 gtcgatgtcg ccgacgtcaa caaattccac gagatcaaga gtctttcggc tttcgagttt
      481 gacgctgtca atctcctctt ggtcgagaag gacataatgt cctttggata cttcatatcc
      541 cttgacgatc tgatcccggt caaccgggcc aatcccagga acgaccttct catattggat
      601 tcgttggccg gtcggctcat agacttggtg gaactggatc tgagcgccgc tcttcgttgc
      661 cgggtacagc tcgactggta tcgaaacgag agcgagcctt atttgtcccc gccagatcgc
      721 gcgcgcagcc atgtcttgcc tcctttggag acgattcaat tattgcgcgg ccgactcgtt
      781 ccgtgttgcg gctttcagcg attgaacgaa gccgcgaaca tcaccgcctg tcgtggcgag
      841 atcgacgatg gccgagccgc agatcacgcc gcgtgctcca gcgcgaagcg cgtcgcgtac
      901 atgctcaggc ttcgatattc caaagccgaa gatcggtggg gctgcgcccg cttgctttag
      961 gcgctcgata agctgcttgt cgaactggcc acttgcgtgt gtaccggtta ttcccgtgcg
     1021 gcttacgcaa taggtgtagg cttttgagag cgtcgcgacc cgttgcagcg cgcgttcagg
     1081 cgtatttgca gcggctataa gcaccggctc gatccccgcc tgggtcatgt cacgggtgaa
     1141 gcgctccgct tcgagagttg gcacatcagc aattagaagg ctgtcggcgc ccgcctccgc
     1201 ggcatcccgc gcgaaccccg gacgagcaac gacaatgttc gcgtaagtga ggatgcccac
     1261 cggaacctcg cggtagcgcg cacgaaagcc cgcaatgagt tccaagcaat catcgacccg
     1321 cacgcccgcg gtgagcgccc gctgcgctgc agcctggatg actggaccat cagcgaccgg
     1381 atccgagaac ggaatcccca cctcgatcat gtccgcgccg gcgtcgacga catccgcgag
     1441 aagacgcgcg ctccgctcca catctggatc accgagcatc acaaatgcgc cgagcgcacc
     1501 atcgcctcca agccggtcaa acatcgacga gtaccggctc atgcggatgg tccaatgagc
     1561 tgctgcgcct gcgcaacatc cttgtccccc cggccagaca atccgaccag gatcgcatcg
     1621 tggggctctt cctccgcgag ccttagagcg tgagcaacgg cgtgcgctga ctcaaaagcg
     1681 cagagaatgc cctcgctctc ggcgagtgct cggaaggcgc tcaacgcttg cgcgtccgtg
     1741 acaccgacat attgcgcccg tccggagtcc ttgagatgcg cgtgttccgg gccgaccgcg
     1801 gggtagtcga gccctgcaga gactgaccac gtgtccgcga tttgcccgtc actgtcctgg
     1861 agcacgaagg tttccgcgcc gtgcagtatg cctggcgttc cacgccgcaa cgttgcgcca
     1921 tgctgctccc cgtcgaggcc gcgaccggcc gcctcgacac caacgagacg cacgtcggca
     1981 tcatcgataa agtcggcgaa gaggccgatt gcatttgagc ctccgccgac gcaggcgaca
     2041 acagcatcgg gcagccgtcc caattgctcg atcaactgtg cccgcgcttc acggccgatg
     2101 atgcgctgaa actctcggac catcgtcggg aacggatgtg gtccggctgc ggtgccgagc
     2161 aggtaatgcg tatcttgaaa gctcgccgac cagtctcgaa gcgcctcgtt tatcgcgtcc
     2221 ttgagagtgc ggccgccact ttcgaccgcg atcacccgcg cgcccatgag ctgcattcga
     2281 aagacgttca gttgctgtct ttcgacgtcc tctgcgccca tgtaaatgac cgtttcaaat
     2341 ccaagcagcg cgcccacgat cgccgttgcc acgccgtgct ggcccgcgcc ggtttcggcg
     2401 atcaaccgct ttttccccat gcgcttggcg agcaatccct ggccgaggac ctgattcgtc
     2461 ttgtgcgcgc cgccgtggag caggtcttcg cgcttgaggt aaatattgcc cggaagattc
     2521 cggcaccgcg taagcggtgt tggtcggccg gcataatgct tgaggagcga gcttaattcg
     2581 ctgcgaaacg aatcgtcatt ctgcgcgtcg agaaacgcca cctcgagctg ttcgagagca
     2641 ggaacgagga tctctgggac gtagcagccc ccgaagcggc cgaagcggcc atctagacgc
     2701 atgccggaac ctgtcttttc gaacggggac gaagcgcggc gaacaatttc gcgatcttct
     2761 ctggagactt ccggcctggt tgttcgtcga cggatgatcc aacatcgatt gcataggcgc
     2821 cgaggtccgc tgcctcacgc gcatttagcg ggccgatgcc accggcaaga attgagcagg
     2881 cgagcctcgg gtgctcgcgg accaacgacc agtcgaacgg ctgtccggtt cctccttcgc
     2941 cgttatcgaa caagagccga tcgccgccga gcctgtcgcg gaagtcgcgc cgaacgctga
     3001 tcgctgtcca gatttcgcat ccgtcgggca gctggcaacg cagctcgcga acatagtctc
     3061 gatcttcgcg cccgtggagc tgaacggcgt ccaagtcgag cattcttgcg caattgacga
     3121 cgtcttgccg atccgaatcg cggaagacgc cgaccacatg caagccccgc tcgcgcgcgg
     3181 tgccggccag cggcagcgcc gcttgtgccg tgacgtggcg ggggctccca ggcacgaaca
     3241 cgaaaccggc aaacgccgct ggccgggcgg cgcggaggga agcgccgcaa ttaatgccgc
     3301 aaatcttcgt ccgcccgaat atgagttccc gtcccgcttg cgctggttca tcggctctca
     3361 tcaaagacga gccgatgagg aagccgtcga ccagttgcga aagccgatcg atgtcagtgc
     3421 ggtcgttaat gcccgattcc gagatgagga cgcgttctcg ggcaagtgca gcgagcctct
     3481 ctgtcgtcga aagatcgatg ctgaggtcgc gtaagtcgcg attgttaatt ccaatgagcc
     3541 gcgctccaag tgcgagcgcg cggcgcattt ccgcctcgtc gtgtacttcc accaatgggt
     3601 ccattcgcaa gcggactgct tcgccgatga ttgcgcgcgc acgatcatca tcaagaagcg
     3661 agagcatcac cagcactgcg tcggcacccg cgattcgcgc ttcaggaact tgccgctcgt
     3721 cgatgaagaa gtccttcgcc agtatcgggc catcgaactc gcgacgagca gccgcgaggt
     3781 catcgaggct cccgcggaaa tagggcccat cacaaaggac actcaacgca tcggcaacgc
     3841 cggcgtagcc acgagcgaga gcagcaggat ccgccgaagg cctaattgct cccgccgacg
     3901 gcgacgcttt cttgatctcg agaatgaatc ttgcgccggg ctgtgcaagc gtgtcggcga
     3961 gacttcgatc ggttggttgc gcgcgagcgc gcaacgcttc gatcgacaca ccttcgtacc
     4021 gcgcgcgaag ctcctctcgc ttcgcctcag caatcttgcc cagaacgccg acggcttcag
     4081 tcacggcttg cctcgacata gcgctccagt gcttcgcctg ccctgccctc ccgcaatgca
     4141 gcgcgcgctt gctgtgctgc ttgctcgaga ctttgagctt tcccggcggt tagaagcaat
     4201 gcagcggtgt tcagcgttac aatgtcttcc tcggggccgc tcgctctccc ttgaaggaca
     4261 gctcgaagtc gagtggcgtt ctcttccacg tcgccgccgg tgacgacttt cagtggcgcg
     4321 cgttcgatac cggcatcttc cggggtgatc tgaagctcgt cgacgtggtc gccagacaat
     4381 cggattgcgc gcgtttcgcc gtgaagagcc acttcatcga ggcccgatcc atgaacgacc
     4441 agtgcctctt ggacgccgag cgccgcaagc gtctgcgcga tgcgccgaag catttt
//
LOCUS       DASRBJ010000081         3129 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_363021,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000081 DASRBJ010000000
VERSION     DASRBJ010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3129
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363021"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..817
                     /locus_tag="VE968_02345"
     CDS             <1..817
                     /locus_tag="VE968_02345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004212532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HZU50696.1"
                     /translation="AKSKARYERYEELLKKSGEKQAQSAQIVIPVAERLGQNVIEFDH
                     LRKGFGDNLLIDDLTFKLPPGGIVGVIGPNGAGKTTLFRMITGQEKPDSGTIKIGESV
                     HLGYVDQSRDSLDGANTVWEEISSGLDQLQLGKREVNSRAYCAAFNFRGADQQKKVGQ
                     LSGGERNRVHLAKMLKSGANVLLLDEPTNDLDVDTLRALEEALEDFAGCAVIISHDRW
                     FLDRVATHILAFEGDSHVEWFEGNFQDYEKDKMRRLGTDSIVPQRIKYKKFSR"
     gene            1479..2807
                     /locus_tag="VE968_02350"
     CDS             1479..2807
                     /locus_tag="VE968_02350"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HZU50697.1"
                     /translation="MRALAEENYLKPTPIQAQTIPLVLSARDVIGIAQTGTGKTAAFA
                     LPILHSLAADPRAPGRKSCRVLVLSPTRELSGQILDSFRAYGRHLQLKWALAIGGVPM
                     GTQVRALSGGVDVLVATPGRLLDLVESNALRLDGVDYFVLDEADRMLDMGFIHDIRKI
                     VAKLPAKRQTLMFSATMDRAISDLAVQMLRDPIRVAVASPAATAERIEQRIIHVDRAA
                     KLALLTEVLQREPIDRALIFTRTKHGADKVVRGLIRSGLKAEAIHGNKSQNQRERVLA
                     AFRNGTIRTLVATDIAARGIDVDGISHVVNFDIPNVPETYIHRIGRTARAGTAGVAIS
                     LCDGDEAAYVRDIERLIGRSIPGSDRRADARRAVPRPGSLSSEITRARPQKSQPRRFA
                     RQTRERAPSASGDGIGAVHFLQRAVPARAERARGAWRSATRSSAAHSKGA"
     gene            2809..3084
                     /gene="infA"
                     /locus_tag="VE968_02355"
     CDS             2809..3084
                     /gene="infA"
                     /locus_tag="VE968_02355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003262224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HZU50698.1"
                     /translation="MAKEELLQFEGLVVEILPDARYRVQLDNGHALVAYTAGRMKKNR
                     IKTLAGDRVTVEVSPYDLEKGRLIFRHKDERVGAVGRAPQRNQFRRR"
BASE COUNT          669 a          908 c          956 g          596 t
ORIGIN      
        1 ggcgaagtcg aaggcgcgct atgagcgata cgaagaactt ctgaagaagt ccggcgagaa
       61 gcaggcccag tccgcgcaga tcgtgattcc ggtggccgag cggctcgggc agaatgttat
      121 cgagttcgac cacctgcgca aaggcttcgg cgacaatctt ctgatcgacg atctcacttt
      181 caagctgccg ccgggcggca tcgtcggcgt gattgggccg aacggcgccg gcaagacgac
      241 gctgttccgc atgatcaccg gtcaggaaaa accggatagc ggcacgatca agatcggcga
      301 gtcggtgcat ctcggctacg tcgaccagtc gcgcgactcg cttgatggcg ccaacacggt
      361 ttgggaggaa atttctagcg ggctcgacca gttgcagctc ggcaagcgcg aagtgaattc
      421 acgcgcgtat tgcgccgcgt tcaacttccg cggcgcggat cagcagaaga aagtcgggca
      481 gctgtccggc ggtgagcgca atcgggtgca tcttgccaag atgctcaaat cgggcgccaa
      541 cgtgctcttg ctcgacgagc cgaccaatga tctcgacgtc gacacactgc gcgcgctcga
      601 agaggctctg gaagatttcg ccggttgtgc tgtcatcatc agtcacgatc gttggttcct
      661 cgaccgcgtc gccacccata tcctcgcatt cgagggggac agtcatgtgg agtggttcga
      721 gggcaacttc caggactacg agaaggataa gatgcggcgg ctgggaacgg attccattgt
      781 tccgcagcga attaagtata agaagttctc gcgctgatcc agcgcgtccc ccggctcagc
      841 cggccgtcgg ggtcttcatt tcttcaaata aatcactatt tatagggggc gtttgcaacg
      901 agtggttcaa cgcgattcat cgctgcataa gcatagtcca tcaattcaca taggagcgca
      961 tggtggcaac gaaagccagc gaaatgcgat cgagggaagc tcggtcacgc gcggatgcaa
     1021 ctttcaagaa ggaagagcgt gccagagaag gtgccaaggc catgatggaa tatcaggcca
     1081 acgcaattac cgagcgtcag aagatggccc ggttgagagc cctgcgcttg gccaaggagg
     1141 cggccgaccg ggaggctgca aaagggtccg accaaggcgg gaagagtagg cggtcataga
     1201 gtatcggctg gtaccgaacc cgttctcgcc ttaaaagcaa cacagctttg gtccatattc
     1261 cgttgaccgg cccttaatgg gccattcaac gagccgcgtg tacggaatcc tgtaaacggc
     1321 ttccggctcc cccatttgac ttaaatcgac agcccagatc gcgcggggtg tcctcaggtc
     1381 ccgcatagcg ccgttgcgat tcgtgtagcg gctctcggga tcatacagaa agtaccctct
     1441 tgtcagattt tcatgagttt ggactcgccg ccgcaattgt gcgcgcgctc gcagaagaaa
     1501 actacctgaa gccgactccg atccaggcgc aaacgatacc gctcgtgtta tcggctcgcg
     1561 atgtcatcgg gatagcccag actggaaccg gcaaaactgc cgcattcgcg ctgccgatct
     1621 tgcacagcct cgcggccgat ccgcgggcgc cgggacgcaa gagctgtcgg gtgctggtgc
     1681 tgagcccgac acgcgaattg tcgggacaaa tcctcgacag cttccgagcc tatggccgtc
     1741 atttgcaact caagtgggca ctggccattg gcggcgtgcc catggggacg caggttcgcg
     1801 ctctttctgg cggcgttgac gttctcgttg ccactcctgg tcggctgctc gacctggtcg
     1861 aaagcaacgc gctccgtctc gacggcgtcg attattttgt gctcgatgaa gccgaccgta
     1921 tgcttgacat gggatttatt cacgacatcc gaaagatcgt cgcgaagctt ccagcaaaac
     1981 ggcaaaccct gatgttttcc gcgacaatgg accgggcgat ctcggacctc gccgtccaga
     2041 tgctgcgcga tccgataaga gtcgcggtgg cgtcgccagc cgccaccgct gaacgcatcg
     2101 agcagcgcat catccatgtc gatcgcgccg cgaaactcgc cctcttaacg gaagtgttgc
     2161 aacgcgaacc aatcgaccgc gcgctcatct tcaccaggac aaaacacggc gccgataagg
     2221 tcgttcgcgg cttgatccgg tccggcctca aagcggaagc tatccacggc aacaaatcgc
     2281 aaaatcagcg tgagcgtgtg ctggcggcct tccgcaacgg aacgatcaga acgctggtgg
     2341 cgactgacat cgccgcgcgt ggcatcgacg tcgatggtat cagtcacgtc gtgaatttcg
     2401 atatcccaaa cgtgccggaa acctacattc accgcatcgg acggaccgct cgggctggca
     2461 ccgcaggagt cgcgatctca ctctgtgacg gcgacgaggc ggcgtacgtg cgcgacattg
     2521 agagattgat tggcagatcc attccgggaa gcgatcggcg cgccgatgcg cgccgtgctg
     2581 tgccaagacc ggggagcctg tcttcggaga ttacacgtgc gaggccgcaa aagtcgcagc
     2641 ctcgcaggtt cgctcgccag acgcgggagc gtgcgcccag cgcgtcaggc gatggcatcg
     2701 gcgcggtgca ttttctgcag cgcgcggttc cggcgcgtgc tgaacgcgct cgcggcgcgt
     2761 ggcgttcggc cactcgttca tcggccgctc attcaaaggg agcctagcat ggccaaggaa
     2821 gagctgctgc aattcgaggg tctcgtcgtt gaaatattgc ctgacgcacg ttaccgcgtg
     2881 cagctcgaca acggccatgc gcttgttgcc tacaccgctg gacggatgaa gaagaaccga
     2941 atcaagactc ttgccggtga cagagtcacg gttgaagtct cgccgtacga tctggaaaag
     3001 ggacggctga tcttccgcca caaggatgaa cgggtcgggg cggtcggtcg agcgccgcag
     3061 cgcaaccagt tccgtcgacg gtgatgcaca atggtcactc caagcaataa cgatgataat
     3121 gagctgtcc
//
LOCUS       DASRBJ010000082         2019 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_617305,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000082 DASRBJ010000000
VERSION     DASRBJ010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2019
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_617305"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2019
                     /locus_tag="VE968_02360"
     CDS             <1..>2019
                     /locus_tag="VE968_02360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HZU50699.1"
                     /translation="YTYWNEALHGVARAGEATVFPQAIGMAASFDTPLLHAEGEAISI
                     EARAKYNEAQRQRNSGRYFGLTFWSPNINIFRDPRWGRGQETLGEDPYLTGTLATAFI
                     RGIQGDDPDFYRAIATSKHFAVHSGPEPLRHEFNVNPTRQDLAETYLPAFRKTVVDGK
                     VASIMCAYNSIDGEPACANAELIDRLARREWGFRGYFVSDCGAIDDISSGHHFAPDNV
                     HAAATAMKAGTDLACVFKNEYLDLGKAVRQGLLRERDVDRALHRVLVSRVRLGILEPP
                     SPAPFSGISFAQNHSAKNRELALRAAREAIVLLKNDGILPLARARARIAVIGPGATSL
                     ISLEGNYNGTPVGAVLPLDALRAAFPDSYVQFAQGSVFAEGTSVEVPRTAFVDGLTGT
                     FFHNADLAGDPVAVEHYAEIDENWNWVTPARGVDPHNFSVRWTAMLKLPAAGIYRFEL
                     QRRRCDSASSVDGYTIVIDGVPPLRVDSPCSARDAGDSPTVTIAATDTRPVKLSIEYR
                     HRSRNFAPAITFAWRPPAAVLQTEALALAKRSDVVIALVGLNAWLEGEEMPVQVPGFA
                     GGDRTDIALPRPQRELLAALEDSGKPLIVVMQTGSAVPLGVEGAKARAIIEAWYGGEQ
                     GGRAIADVLRGSYDPAGRLPITIYQRTDQLPPFTDYSMRGRTYRYFRG"
BASE COUNT          397 a          618 c          593 g          411 t
ORIGIN      
        1 cttataccta ctggaacgag gcactccacg gcgttgctcg tgccggtgag gcaacggtgt
       61 ttccgcaggc gatcggaatg gcggcgagct tcgacacgcc acttctgcac gccgaaggcg
      121 aggcgatttc catcgaagca cgagcaaaat acaatgaggc tcagcgccag cgaaacagcg
      181 gtcggtattt tgggctgact ttctggtctc ctaacatcaa catattccgt gatccgcgct
      241 ggggccgcgg ccaggagacg cttggcgaag acccctatct cacgggaact ctcgcgacgg
      301 cattcattcg aggtatacag ggtgacgacc ccgattttta ccgagccatc gcgacttcga
      361 agcactttgc agtgcatagc ggcccggagc cattgcgcca cgagttcaac gtgaacccga
      421 cgcggcaaga cctcgccgag acctatctcc cggcgttccg taagaccgtt gtcgatggga
      481 aggtcgcatc aatcatgtgc gcctacaatt cgattgacgg tgagcctgct tgcgcaaatg
      541 ccgagctgat cgaccggctt gcacgacgtg aatgggggtt tcgcggttac ttcgtttcag
      601 attgcggagc gatcgacgat atcagtagcg ggcatcattt cgcgcctgac aacgtgcatg
      661 ccgccgccac cgcaatgaag gccggtacgg atctcgcctg tgtcttcaag aacgaatatc
      721 tcgatcttgg aaaagccgtc cgacagggct tgctccgaga acgcgacgtc gaccgagcgc
      781 ttcatcgagt gcttgtttcg cgggtgcgct tggggatcct cgagccgcct tcaccagcgc
      841 ccttttccgg tatttccttc gcgcagaacc atagtgctaa gaaccgcgag ctcgcccttc
      901 gcgcagcgcg cgaagcaatc gtgctgctga agaacgatgg tattctccca cttgccagag
      961 cccgtgcacg aattgccgtg atcggcccgg gtgcaacttc gctcatctcc ctcgagggca
     1021 attacaacgg aacgccggtt ggggcagtgc tgccactgga tgcgcttcgc gcagcatttc
     1081 ctgattcgta cgttcagttt gcacaaggct ctgtcttcgc cgaggggact tccgtcgaag
     1141 tcccgcggac tgccttcgtc gatggactaa ctggaacatt cttccataac gcggatcttg
     1201 caggcgatcc tgttgctgtc gaacattacg cggagatcga cgagaactgg aactgggtca
     1261 cacctgcccg cggtgtcgac ccccacaact tctccgtgcg gtggacagcg atgctgaagc
     1321 tgccggcggc aggcatttac cggttcgagc tgcagcgccg ccgctgcgat tccgcttcaa
     1381 gcgtcgacgg atacacgatc gttattgatg gcgttcctcc gctgcgggtg gacagcccat
     1441 gttcggcgcg tgacgcgggg gacagtccaa cagtcacgat agcggctacc gacacgcgac
     1501 cggtgaagct ttccatcgag tatagacatc gctcccgcaa cttcgcgccc gcgataacct
     1561 ttgcctggcg gcctccggcg gcagtgcttc aaaccgaggc gcttgcgctc gcgaaacgat
     1621 cggacgtcgt cattgcgctt gtgggcctca acgcctggct cgagggcgaa gaaatgccgg
     1681 tccaagtgcc aggctttgcc ggaggagacc gcaccgacat cgcgctgccg cgcccccaac
     1741 gagagttgct tgcagcgctc gaagattctg gaaagccgct tatcgtcgta atgcagaccg
     1801 gctcggcagt tccgcttggg gtcgaaggtg caaaagcaag agcaatcatc gaggcatggt
     1861 atggcggcga acaaggcggc cgcgccatcg ccgatgtttt gcgcggtagc tacgatcctg
     1921 cgggacgcct cccgataacc atttaccagc ggacggatca gcttccgcca ttcaccgact
     1981 attcgatgcg tggccgcacc taccgctatt tccgcggca
//
LOCUS       DASRBJ010000083         2057 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_8327,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000083 DASRBJ010000000
VERSION     DASRBJ010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8327"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1579)
                     /gene="dnaG"
                     /locus_tag="VE968_02365"
     CDS             complement(<1..1579)
                     /gene="dnaG"
                     /locus_tag="VE968_02365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003047354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HZU50700.1"
                     /translation="MTLSPAWLDELRARTRLSSVIAPSVKLIRAGREFKACCPFHNEK
                     TPSFTINDEKHFYHCFGCGAHGDAIRFLTEHRGLPFMDAVKELAATAGMDVPAPDPKS
                     RERAEQTASLTDVMTQVASWYTEQLNGPGGHAARDYLKRREIDWAVATRFGLGFAPND
                     RQALRKALAHLGEDKLIETGMLISAEDSKESYDRFRGRLMVPIRDPRGRVIGFGGRII
                     GEGEPKYLNSPQTVLFDKGRTLYNLDRAGPASRSAKRLIVVEGYMDVIALDRSGISEV
                     VAPNGTALTEAQLERLWLLDPTPILCFDGDNAGKKAAIRAAERALPLIRPDRTLRFVE
                     LPAGKDPDDVIRSGGAAAFEALLENAEALDARLFRHEMEAEPLSTPERWASLKERLIN
                     HACAIGHSDLSRIYREDWLRRFYELRRPQSPVQHPSPPKRGAFKNGRFIPASAPVRNE
                     ARAIATSGIDATMARALILGFANYPEELPGHCEQLASLTIRDQPTSKIRDELVNAAFT
                     GGVLDRDGISTILSADGA"
     gene            complement(1625..2056)
                     /locus_tag="VE968_02370"
     CDS             complement(1625..2056)
                     /locus_tag="VE968_02370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017672553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HZU50701.1"
                     /translation="MKGGDKETTATLRLVQSEIKNRDIEARTGGAPADDNQLVTEVLQ
                     RMVKKRRESADIYRRNGREDRAAVEEAEIRVIERFLPSQLSDSEAQTEIEAIIAESGA
                     SSMKDMGRVMAIVKERLGASIEPARASGLVKAALSASAVDK"
BASE COUNT          367 a          619 c          623 g          448 t
ORIGIN      
        1 ttgctccatc ggcgctcaat atggtgctaa tcccgtcgcg atcaagcacg ccacccgtaa
       61 atgccgcgtt tacaagctcg tcgcggatct tcgacgtcgg ctgatcgcgg atcgtcagcg
      121 atgccagttg ttcgcaatgg ccgggaagtt cctcggggta gttggcaaag cccaatatca
      181 acgcgcgggc catggtcgca tcgataccgc tcgttgctat tgctcgcgct tcgtttcgaa
      241 cgggagccga ggcaggaatg aaacgcccat tcttgaaggc tccccgcttc ggtgggctag
      301 gatgttgcac cggcgattgc ggccgcctaa gttcgtagaa gcgccttagc caatcctcgc
      361 gatagatccg cgacaagtcc gaatggccga ttgcgcaagc gtggttgatc agcctttcct
      421 tgagtgatgc ccagcgttcg ggtgtggaga gcggctcggc ctccatttcg tgccggaaca
      481 gccgcgcatc gagggcctcc gcattttcaa gaagggcttc aaatgccgcc gcgccgccgc
      541 ttcgaatgac gtcgtcggga tccttgcccg caggtagttc gacgaaacgc aacgtgcggt
      601 ccgggcgaat taacggcagt gctcgctcag cggcgcgaat ggcagccttt ttgccggcat
      661 tgtcgccatc aaagcagagg atgggcgtgg ggtcgagaag ccataaacgc tcaagttggg
      721 cttcggtcaa cgccgtaccg ttgggagcga cgacttcact tatcccgctc cggtcaagtg
      781 cgatcacgtc catgtaacct tcgacaacga tcaagcgctt ggccgatcgg cttgcgggtc
      841 ccgcacggtc gaggttgtag agagtgcgcc ccttgtcgaa gagaacggtt tgcggcgagt
      901 tcagatattt cggttcgcct tcaccgataa tccggccacc aaatccaatt acgcgcccgc
      961 gcggatcacg gattggaacc atgagccgcc cgcgaaagcg atcatagctt tccttcgagt
     1021 cctcggcgct gatgagcatt ccagtctcga tcagtttgtc ttcaccgaga tgagcaagcg
     1081 ccttccggag cgcttggcga tcgtttggtg cgaagccgag gccgaagcga gtcgccacgg
     1141 cccaatcgat ttcacggcgc ttcagatagt ccctggcagc gtgacctccg gggccgttca
     1201 gctgctccgt gtaccagctt gcgacttgcg tcatgacgtc agtcaagctt gccgtctgct
     1261 cggcacgttc gcgtgacttt gggtcaggtg ctggaacgtc catgcccgca gtggccgcga
     1321 gttccttcac cgcgtccatg aacggaaggc cgcggtgttc cgtcaggaag cggatggcgt
     1381 cgccgtgtgc tccacaaccg aagcaatggt aaaagtgctt ttcgtcattg atggtgaagc
     1441 tcggcgtctt ctcgttgtgg aaagggcagc acgccttgaa ctcacggccg gcgcgaatga
     1501 gtttgacgga cggcgcgatg acgctggaga gccgggtccg cgcacgcagt tcgtcaagcc
     1561 aggcagggct gagagtcacg atctgaacct agtagcgact cgtcgcctcg caaggcgagc
     1621 gcttctactt atccacagct gaggcgctta gcgcagcctt gacgagacca gacgctcgcg
     1681 cgggctcgat acttgcgccg agacgttctt tgacgatcgc catcactcgg cccatgtctt
     1741 tcatggacga cgcgccgctc tcggcgatga tggcctcgat ctcggtctgc gcctcgctgt
     1801 cgctcagctg gcttggaagg aagcgctcaa tgacgcggat ttcggcttcc tcgacggcgg
     1861 cgcggtcctc acggccgttg cgacggtaga tatcagccga ctcgcgtctt ttcttgacca
     1921 tccgctggag cacttcggtt acgagctgat tgtcgtcggc gggtgctcca ccggtacgcg
     1981 cttcgatatc gcggttcttt atctcggatt gcaccaagcg cagggtcgcc gtcgtctcct
     2041 tgtcgcctcc cttcatt
//
LOCUS       DASRBJ010000084         2512 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_60876,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000084 DASRBJ010000000
VERSION     DASRBJ010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2512
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60876"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..600)
                     /locus_tag="VE968_02375"
     CDS             complement(<1..600)
                     /locus_tag="VE968_02375"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: protein motif:HMM:TIGR00080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HZU50702.1"
                     /translation="MFPVRFWRMGRTEDFASERERMIDRQLRRRGIADEAILDAFRAV
                     PREAFVAERMRHLAYGDHPLPIEADQTISQPYIVALMVEAARLGLDDKVLEVGAGSGY
                     AAAVMSHLAARVITIERQHELAVIARERLQELGYSNIAVVEGDGTKGCVEEAPFDAIL
                     AAASGSHVPQSLLDQLAPKGRLVMPLGGAGLVQKLIRVTK"
     gene            complement(611..1622)
                     /gene="thiS"
                     /locus_tag="VE968_02380"
                     /pseudo
     CDS             complement(611..1622)
                     /gene="thiS"
                     /locus_tag="VE968_02380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545981.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
     gene            1728..2243
                     /gene="accB"
                     /locus_tag="VE968_02385"
     CDS             1728..2243
                     /gene="accB"
                     /locus_tag="VE968_02385"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010414347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HZU50703.1"
                     /translation="MAQPKDPAAAGNKGSMRIDPALVRELAELLTANELTEIEVEDGD
                     RRIKVKREIPAIVAAAGAPMLPSVPSAPALTGPPARAKEDLGSEPSEEISGTTVKSPM
                     VGTAYLSPEPSAAAFIEVGKVVKAGDTLLIVEAMKVMNPITAPESGTIKKIMVADAQP
                     VEFDQPLVVIG"
     gene            2253..>2512
                     /locus_tag="VE968_02390"
     CDS             2253..>2512
                     /locus_tag="VE968_02390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013041392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HZU50704.1"
                     /translation="MSIEKLLIANRGEIALRIHRACHEMGIKTVAVHSTADADAMHVR
                     LADETVCIGPPAASESYLNIPNIISAAEVVHADAIHPGYGFLS"
BASE COUNT          504 a          793 c          760 g          455 t
ORIGIN      
        1 ctttgtgacc ctgatgagct tttgcaccag acccgcgccg ccaagcggca tcacgaggcg
       61 tcccttcggg gcaagctggt cgaggaggct ttgcggcacg tggctcccgc tggcggcggc
      121 aagaattgca tcaaatggcg cctcctccac gcaacccttc gtgccatcgc cctcgacaac
      181 cgcgatatta gaatatccaa gctcttgaag gcgttcgcgg gcgatgaccg cgagttcatg
      241 ctgccgctcg atcgtaatca cgcgcgcggc aaggtggctc atgactgcag cagcatagcc
      301 cgagcccgca cccacctcga ggaccttgtc gtcgaggccg agacgggccg cctcgaccat
      361 gagcgcaacg atataaggct gggagatcgt ctggtctgcc tcgattggca atggatggtc
      421 accataggcg agatgacgca ttctctccgc gacgaaggct tctctcggca cggcccgaaa
      481 tgcatcgagt atcgcttcat cggcgattcc ccggcgtcgg agctgccgat cgatcattcg
      541 ttcgcgttcg gacgcaaaat cctcggttcg acccatgcgc cagaaacgca cggggaacat
      601 gcggtgtgcc ctagatgaga cccgcgagcg ggctcgatgg atcggcgtag cgacgttttt
      661 gcattcggcc cgcaaggtaa gcgagccggc ccgagtagac cgccgacttc atcgcccgag
      721 ccatgagcac gggatctttc gcctccgcaa tcgcggtgtt catgagaaca ccatcgcagc
      781 cgagttccat cgcttcggcg gcatcgctgg cagtcccgac gcctgcgtca acgagcactg
      841 gaacattcgc gccctcgacg atgagacgga tggtaacgcg gttctgaacg ccaagaccgg
      901 atccgatcgg agctccgagc ggcatgatgg caactgctcc tgcttcctcg agttgcttgg
      961 cagcgatcgg atcatcgaca cagtacacca tgggctcgaa gccttcggcg acgaggctct
     1021 cggtcgcgcg gagggtctcg cgcatatcgg ggtagagcgt ctttgcttct ccgaggacct
     1081 cgagcttcac gaggttccag ccgcccgctt cccgagcgag gcgaagagtg cgaatcgcct
     1141 cctctgccgt gaagcagccg gcggtgttgg gaaggtatgt gacgttttgc ggatcgatga
     1201 aatcggtgag ccgcggttgc cccggatcag aaatgttgac gcggcgaacc gccaccgtga
     1261 cgatctcggc accggatgcc tcgacggcag ccgcattttg ctcgagggtc ttgtacttgc
     1321 cagtgcccac gatcagcctc gacgtgaagg ttcggccggc gacgctccat gtgtcagcac
     1381 tgatttcctg ctgcgcagtc aacttagcca cctccgacaa aatgcacgat ttcgaagtca
     1441 tcgccgtcct cgaccatgac ttcctgcaac gaggatcgcg gaatgatctc gagatttcgt
     1501 tcgacggcga ctctcagcgg atcaaggcca aggctgctca ccatttcggc gacattcatg
     1561 cccccgggaa ggcgtcgatg ctcgccgttg acgcggatac caaggcttcc gtccagactc
     1621 atcggcgacg cacttaggag cgaagcggtg gagcgccaag cctgttgagg gtggacgtgg
     1681 cgcggatcgt ctgacagagc gctccgccaa caggatcaag gaacgccatg gctcaaccaa
     1741 aggaccccgc tgctgccggc aacaagggat cgatgcggat cgatcccgca ctggtgcgtg
     1801 agcttgccga actgctgacc gccaatgaac tcaccgaaat cgaggtcgag gacggcgatc
     1861 gccggatcaa ggtcaagcga gagatccccg caatcgttgc cgccgccgga gcacccatgc
     1921 tgccgagcgt cccatccgct ccagcactca ccggaccgcc ggcacgcgcg aaggaagact
     1981 tgggaagcga accttccgag gaaatcagcg gcacgaccgt caagtcgccg atggtcggca
     2041 ccgcctatct ttcgcccgag ccgagtgccg ccgcgttcat cgaggttggc aaggtcgtaa
     2101 aggcaggcga cacgctgctg atcgttgaag cgatgaaagt gatgaaccca atcaccgcgc
     2161 ccgaaagcgg caccatcaag aagatcatgg ttgccgatgc gcagcccgtc gagttcgacc
     2221 agccgctcgt cgtcatcggc tgaggcagca aggtgagcat cgaaaagctg ctgatcgcca
     2281 accgcggcga gatcgcactc cggatccatc gtgcctgtca cgagatgggc atcaagaccg
     2341 ttgcggtaca ctcgacggct gatgccgatg cgatgcacgt gcgcctcgcc gatgagacgg
     2401 tgtgcatcgg gccgcccgca gcgagcgaat cctatcttaa cattcccaac atcatctcgg
     2461 cggccgaagt cgtgcacgcg gacgctattc atccgggcta cgggtttctc tc
//
LOCUS       DASRBJ010000085         3655 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_160640,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000085 DASRBJ010000000
VERSION     DASRBJ010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3655
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160640"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..329)
                     /locus_tag="VE968_02395"
     CDS             complement(<1..329)
                     /locus_tag="VE968_02395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50705.1"
                     /translation="MPAYAQRQKIVRPRERAYALTAVVLVQFGLALVLLSGFHVDLAH
                     PGSAVQKLINVALSKPPPPPVPPRLEKVPVKRRHRATSAPKAAPVPVGGSPGPKVHHA
                     PPSVTPIV"
     gene            complement(347..667)
                     /locus_tag="VE968_02400"
     CDS             complement(347..667)
                     /locus_tag="VE968_02400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018250585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50706.1"
                     /translation="MKTISKIMTALALTATTATSFAVSTPAEARHHYRHHYYGRTYYR
                     HRYCRYSSGTTGLVAGGVAGAVVGHSLIGGGLLGTAAGAVGGAVAGRAIDRASTAPRR
                     CYSR"
     gene            complement(831..1871)
                     /gene="nadA"
                     /locus_tag="VE968_02405"
     CDS             complement(831..1871)
                     /gene="nadA"
                     /locus_tag="VE968_02405"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011413058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HZU50707.1"
                     /translation="MTVQTNVLRGLDLLGEIERLKRERNAVILAHYYQKPEIQDLADF
                     VGDSLDLSRKAAETDADVIAFCGVRFMAETAKILSPEKTVILPDMDAGCSLEDSCPPD
                     QFAAFRNAHPDHLALTYINCSAAVKALSDIIVTSSSAHVILDQIPRDQKIIFGPDRHL
                     GGYLARKLGRDMLLWPGVCIVHQAFSETELLKLKMEHPGAPVAAHPECPAHILDHADL
                     VGSTKAILDFALSSPAETILVATEPHIIHQMQKAAPDKLFIGVPGGDGNCNCNMCPYM
                     ALNTLEKLYVALRDLHPRIELPAEVMEKARVPLERMLEMAGRTVGQGDVGKPILPLID
                     HPEEIDEAISGD"
     gene            complement(1868..2590)
                     /locus_tag="VE968_02410"
     CDS             complement(1868..2590)
                     /locus_tag="VE968_02410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HZU50708.1"
                     /translation="MESRLNKPLILLMVVIALVVGLMLGTWTGIADKLFGGPNPKTIA
                     TASLESMRAQNRLTVFAARYVSVVTSQEQRLGGLISSQRTLILPGDVRYEIDLSKLNP
                     GDVTWDPSTKILQVQLPAMDVAGPDVDINSVKEYGGGGVLSALTNANQQLDQANRDRA
                     VQDLRKQATAAVPMQLARQAARAAVARSFAMPLVAAGFKDVKVVARFPTDGRDDASYI
                     DLSTPYDQAINEAERLRAQGQK"
     gene            complement(2575..3420)
                     /locus_tag="VE968_02415"
     CDS             complement(2575..3420)
                     /locus_tag="VE968_02415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007688342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HZU50709.1"
                     /translation="MDAPYGKVEQLGRGIRRILAHNPSAFTYYGTQSYLVGTNEVAVI
                     DPGPDLPEHIEMLVRAISDRRVAAILCTHTHLDHSPASRSLAERTGAPIIGCGPLALK
                     ARGPRADASFDADYSPQHVLADAETIDVDGLPLVAVATPGHTSNHLCFSYGDALFSGD
                     HVMGWSTTVVFPPDGDMAAYRASLEKLRHRDERIYYPAHGPPITNPSRYLRQLMAHRK
                     QRESQILQLVRDETRNVPDIVANAYPGLDPRLTIAAGGSVLAHLLDLERRGLVKQQHD
                     QWKAV"
     gene            complement(3453..>3655)
                     /locus_tag="VE968_02420"
     CDS             complement(3453..>3655)
                     /locus_tag="VE968_02420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50710.1"
                     /translation="LSFVRHGNARAKVEVTAMSSGETRMLRMPPAVCTGVVRSSLEID
                     ALGGNAPSGAMPGKVGDYDLRC"
BASE COUNT          723 a         1061 c         1160 g          711 t
ORIGIN      
        1 acaatgggag tgacggatgg cggcgcatgg tgaactttgg ggcccggcga accgccgact
       61 ggaacaggcg ctgctttggg agcggaagtc gcacgatggc gccgtttcac gggcactttc
      121 tccagccgag gtggaactgg gggcggtggc ggcttcgaca gcgccacgtt gatcagcttc
      181 tgaacggcac ttccgggatg ggcaagatcg acgtggaatc cgctgagaag cacaagtgca
      241 agcccgaatt gcacgagcac gaccgcggtc agcgcataag cgcgctcccg cggccgaacg
      301 atcttctggc gctgcgcgta ggcgggcact taagcccgct cacgacttag cgagaatagc
      361 agcgtcgggg cgcggtcgaa gcgcggtcga ttgcccgacc agcgacggca ccgccgactg
      421 ctccggcggc tgttccaagc agcccgccgc cgatgaggct gtgcccgacg accgcgcccg
      481 caacgccgcc ggcaacgagg ccggtcgtcc cgctcgaata gcggcaatag cggtgacggt
      541 agtaggtacg gccataataa tggtgccgat agtgatgccg cgcctcggcg ggcgttgaca
      601 ctgcgaacga tgtcgcggtc gtggccgtca aagcgagcgc cgtcatgatc ttgcttatgg
      661 tcttcatcgt ccaatctctc gtttctgttt cgcctatcta acgagaaatg ccggggcgtg
      721 tttcgcgtaa ggcgccggta acggtgaaca gtgcctccgc gacggtgacc cgacagttgt
      781 aatcatgagc gttaacggaa gtggcggcat gctgttccgc aactggacgc tcagtccccg
      841 ctaatcgctt cgtcgatttc ctcgggatga tcgatgagcg ggagaatggg cttgccaaca
      901 tcaccttgcc caacggttcg gccggccatt tccagcattc gctcaagcgg aactcgggct
      961 ttttccatga cctcggctgg aagctcgatt cgcgggtgca gatcacgaag cgcgacgtaa
     1021 agcttctcga gcgtgttgag cgccatgtac ggacacatgt tgcagttgca attgccatcg
     1081 ccgccaggaa ccccgatgaa caacttgtcg ggcgcggcct tctgcatctg atggatgatg
     1141 tgcggttcgg ttgcgacgag aatcgtctcg gcaggtgaac tcagggcgaa atcgaggatt
     1201 gccttggtgg aaccgacgag atcggcatga tcgaggatat gcgccgggca ctcaggatgc
     1261 gcggcgaccg gagcacctgg atgctccatt ttcagcttca gtagctcggt ctcgctgaag
     1321 gcctggtgga cgatgcacac tcccggccac aagagcatgt cgcgtccgag cttgcgtgca
     1381 agatagccgc caaggtgtcg gtccggaccg aatatgatct tctggtcacg tgggatctgg
     1441 tcgaggatga cgtgggcgga cgagctggtg acgataatgt cgctaagcgc cttaaccgcg
     1501 gccgagcagt tgatataggt gagagccaga tggtccggat gggcgttgcg gaacgcggca
     1561 aactggtctg gcgggcagct gtcctcgagc gagcagccgg cgtccatgtc gggaagaatc
     1621 accgtctttt ccggtgatag gatctttgcc gtctctgcca tgaagcggac tccgcaaaag
     1681 gcaatcacgt ccgcgtcggt ttcggcagcc ttgcgcgaca aatcgaggct gtcgccaacg
     1741 aaatcggcaa gatcctggat ctcgggcttc tggtaataat gggcaagaat aacggcgtta
     1801 cgctcgcgct taagccgctc gatttcgccg agcaggtcca ggcctcttag aacattggtt
     1861 tgaacggtca tttttgccct tgagcgcgca agcgttccgc ttcgttgatc gcctggtcat
     1921 atggggttga aagatcaata taggaagcgt cgtctcttcc gtcagtcgga aagcgcgcga
     1981 ccactttcac gtccttgaag cccgcggcga cgagaggcat ggcgaagctt cgagcgaccg
     2041 ccgcgcgcgc tgcttgacgt gcgagttgca tgggcacggc cgctgttgcc tgcttgcgca
     2101 gatcctgcac ggcgcggtca cggttggcct ggtcgagctg ttgattggcg tttgtgagcg
     2161 ccgaaagaac gccgccaccg ccatattcct ttaccgaatt gatatcgacg tccggccccg
     2221 cgacatccat cgcgggaagc tgaacctgga ggattttcgt cgacggatcc catgtgacgt
     2281 cacccgggtt caacttcgaa agatcgattt cgtagcgcac gtcaccaggg aggatgagcg
     2341 tgcgctgcga actgatgagg cctccaagcc gctgttcctg gctggtcacc accgaaacgt
     2401 aacgcgcggc aaagaccgtc aatcgattct gcgcgcgcat tgactcgagg ctcgccgtcg
     2461 caattgtctt gggattgggg ccgccaaaaa gcttgtcggc gatcccggtc caggtgccaa
     2521 gcatgaggcc gaccaccaaa gcgatgacaa ccatcagcaa gatgagcggc ttgttcagac
     2581 ggctttccat tggtcgtgct gctgcttaac gaggccgcgg cgttcaaggt ccagaaggtg
     2641 ggcgaggact gacccgccgg cagcgatcgt aagacgtgga tcaagcccgg gataagcatt
     2701 cgcgacgata tcggggacgt tgcgcgtttc atcccgcacc agctgcagga tctggctttc
     2761 gcgctgcttg cgatgggcca tcaactgccg cagatatcgg ctgggatttg tgattggggg
     2821 cccgtgcgca gggtaataga tgcgctcgtc acgatgccgg agcttctcaa ggctcgcgcg
     2881 ataggccgcc atgtcgccat ccggcgggaa gacaacggtc gtcgaccaac ccatcacatg
     2941 gtcgccactg aagagtgcgt caccatagct gaaacagagg tggttcgacg tgtgaccggg
     3001 cgtcgcaacc gcgacgagcg gcagaccatc gacgtcgata gtctcggcgt cggcaagcac
     3061 gtgctgaggc gagtaatcag catcgaacga ggcatcggcg cgcggcccac gtgccttcaa
     3121 ggcaagtggc ccacagccga tgatgggcgc gcccgtacgc tcggccagcg atcggcttgc
     3181 ggggctatgg tcaagatgcg tatgcgtgca aaggattgcc gcaacccggc gatcactaat
     3241 tgcgcggacg agcatttcga tgtgctctgg aaggtcaggg cccggatcga tgacggcaac
     3301 ctcgttcgtc ccgacgagat aagactgcgt gccgtaataa gtgaaagcgg acggattatg
     3361 cgcaagaatc cgtctaatcc ctcgcccaag ctgttcgact tttccgtacg gcgcgtccac
     3421 gaaacgcctg tgccacgatg gggccgctca atctagcagc gcagatcgta atcgccgacc
     3481 ttgcccggca ttgcgccgct cggcgcattc ccgccaagcg cgtcgatttc aagcgagctt
     3541 cgaacgactc cagtgcaaac cgcgggcggc atgcgaagca tcctcgtctc gccgctgctc
     3601 atcgccgtca cttcgacctt ggcacgggca ttgccatgtc gaacgaagct caacg
//
LOCUS       DASRBJ010000086        10039 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_216294,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000086 DASRBJ010000000
VERSION     DASRBJ010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 10039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10039
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216294"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..475)
                     /locus_tag="VE968_02425"
     CDS             complement(<1..475)
                     /locus_tag="VE968_02425"
                     /inference="COORDINATES: protein motif:HMM:NF012584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HZU50711.1"
                     /translation="MIEVRVPDEQEGTKAVVRAWLKRVGEPVAINDPLVELETDKVTQ
                     EVPSPGAGVLAEIILETDAEAVPGALLARIAIGGDAPSEDRSNQGNRAKSATAVAERG
                     PVQPGTSDTGTVAGRETRLSPSVRRACLQHGIDPARIEGTGRNGRVTREDVDRAVS"
     gene            complement(477..2528)
                     /locus_tag="VE968_02430"
     CDS             complement(477..2528)
                     /locus_tag="VE968_02430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016745193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HZU50712.1"
                     /translation="MADRDPGRVTAEVDWREVARLVLTSRAMDRIEEQELVPAKKVLY
                     QFSARGHDMAQVLLGLELKDGDAACGYYRSRPLLLALGVPIADALGSGMGLAGGYSDG
                     RDIGVVFNYPNPGGAHALPMSGGVGAQYTPAVGWAQAIAYKHKVLNEGPSDAIAVVLG
                     GDASCATGGFWSALTIATTQQLPLLIYVEDNGYGISVPSDYQTPGRDIAANLASFSGL
                     TIFNGDGTDPSEAARLVRAAVAHVRTKRAPALLRVTVPRLEGHSYQDTQAYKSEAEIA
                     AEWARDPLPKLRAHVARYQVGDEQWSDLERETDWQVEAAVAEAQARGIASPESVTRNV
                     FYEEAMQQVGGRAGLSLEGTTEEAEPQGQRINMVTAIRRVLDQELEANPRVLVFGEDV
                     GPKGGVHAVTLGLQEKFGRERVFDTSLNEEGIVGRAVGMALAGLMPVPEIQFRKYAEP
                     ATEQIHDCGTMRWRTDNRFAAPMVLRVPGGFFKCGDPWHSMTNEVEFVHNPGWKVAVP
                     SNAEDAVGLLRSGLRGNDPVLFFEHRAMLDDSWARRPWPGDDYALPFGRAKKTREGDK
                     ITIVTWGAMVPRSEIAADGISADIIDLRTLAPWDEEMVLESVRRTRRCLIVHEDLRTG
                     GFGAEIAAVVADEAFLDLDAPVARVTMPDIPSPHHPKLMEWALPSPARIRREIERLVG
                     F"
     gene            complement(2536..3735)
                     /locus_tag="VE968_02435"
     CDS             complement(2536..3735)
                     /locus_tag="VE968_02435"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF006719.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid aminotransferase"
                     /protein_id="HZU50713.1"
                     /translation="MLTQANEKARGLADLPPVNNDSLIALIGMVNADPRPEKIDVGVG
                     VFRDGAGNTPILKVIKEAEKRLLETQKTKAYLGSAGDKRYAELLRPIILGDHAGDPRI
                     VGLQTPGGCGALRLGFELLALANPKARVFVGGPTWPNHPPIIRAVGLQAVEYAYYERG
                     QGAIRFEDMLESLSSGEPGDIALLHGCCHNPTGADLSEEQWRKVADVVVERELVPLVD
                     IAYQGFGRGLDEDAFGVRLMLDKCDEVIVAQSCDKNFSVYRDRVGSLWVKTLSPEASA
                     TAMGHLHQIAREMWSMPPDHGAACVRIVLDDPQLHDRWLVELAGMRERINAVRQRIAA
                     ADPRLSFIGRQYGMFSMLPLSKEQVLKLRKDDAIYMADSGRFNVVGMGDAQIDRFIAA
                     VVSALNA"
     gene            complement(3754..4827)
                     /locus_tag="VE968_02440"
     CDS             complement(3754..4827)
                     /locus_tag="VE968_02440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HZU50714.1"
                     /translation="MSAHFHALRVAEIVPETAEANSIRFEIPTELQGAFKFKAGQHLT
                     LRAMIGGEEVRRNYSLCTAPADADWMVTVKRIGGGLFSNWVGDALKPGDTIEVMVPHG
                     SFTTEFDKANERHLVGIAGGSGITPVLSLLKTLLREEPRSRFTLIYGNRDSSSVIFLE
                     TLASLKDKYLGRLEIYHFLDQEAQDIELFNGMLDRDRLDDAISMLVPDAAEIDGWFIC
                     GPGPMMDAAEGALLDRNVRNERIHIERFTADRPPEAIARELAQLQTDAEGVSVAVTLD
                     GRTRRVPFTAGNILDSARAAGLAAPFACKAGVCATCRAKVTKGKVEMAARYGLTDEEV
                     AAGYVLTCQSVPLGAGVAVDYDA"
     gene            complement(4828..5637)
                     /gene="paaC"
                     /locus_tag="VE968_02445"
     CDS             complement(4828..5637)
                     /gene="paaC"
                     /locus_tag="VE968_02445"
                     /EC_number="1.14.13.149"
                     /inference="COORDINATES: protein motif:HMM:NF016993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaC"
                     /protein_id="HZU50715.1"
                     /translation="MASLPPIDVPRGVTGAGSFDAPSASEADSARIDYLLRLGDDALV
                     LGQRLSEWCGHGPVLEVDISLANLALDLVGQATLLLNEAGDGDRLAFHRDVLDFRNCL
                     LVEQPNGDFAQTIARHLLYSTWQHMLLQRLQQSSDQFLREFAHKAVKEVAYHRELARE
                     WTIRLGDGTEESSRRMAEGLDWNWRFIPELFEVDDNLQALIERGIAPDPNAFEAEYRS
                     QIGAVLLEAQLEPPADQRPILGGRRGHHSEHLGHLLAIMQFLPRTYPDATW"
     gene            complement(5637..5921)
                     /gene="paaB"
                     /locus_tag="VE968_02450"
     CDS             complement(5637..5921)
                     /gene="paaB"
                     /locus_tag="VE968_02450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaB"
                     /protein_id="HZU50716.1"
                     /translation="MSSDWPLWEVFVRSKGGLSHRHVGSVHAPDGELALAHARDTYTR
                     RMEGVSLWVVPSAEIVASDPDQAGELFEPAASKIYRHPTFYDIPDEVKHI"
     gene            complement(5918..6898)
                     /gene="paaA"
                     /locus_tag="VE968_02455"
     CDS             complement(5918..6898)
                     /gene="paaA"
                     /locus_tag="VE968_02455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018250994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaA"
                     /protein_id="HZU50717.1"
                     /translation="MYTTELQKTARIENLEDPELLEQFEARVAADDFIEPKDWMPEAY
                     RRTLTRQISQHAHSEIVGMLPEGNWITRAPSLRRKAILLAKVQDEAGHGLYLYCAAET
                     LGTSREQMIDALHSGKAKYSTIFNYPTLTWADIGAIGWLVDGAAIMNQVPLQRTSYGP
                     YARAMVRICKEESFHQRQGYEIMIALSNGTAEQKRMAQDALNRWWWPSLMMFGPPDED
                     SPNTAQSMRWRIKRETNDELRQKFVDITVPQAEFLGLTVPDPDLKWNESKGGYDFGPI
                     DWDEFYAVVRGEGPVAKERMKARRDAWNDGAWVREAAAAHEAKRSARKAA"
     gene            complement(6931..7374)
                     /gene="paaI"
                     /locus_tag="VE968_02460"
     CDS             complement(6931..7374)
                     /gene="paaI"
                     /locus_tag="VE968_02460"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyphenylacetyl-CoA thioesterase PaaI"
                     /protein_id="HZU50718.1"
                     /translation="MGEVALMNPDELARRVAEEMLSGEGTGPAWAIKIDEVRSGYARL
                     SMVVRGDMLNSHAIAHGGMIFSLADTAFAYVCNGGNEATVAAQASIIFLDKAMEGETL
                     VAEAQQVAREGRAGVTRVSVRTKDGRNIAEFTGYSRTLGGAVVAI"
     gene            7471..8247
                     /gene="paaG"
                     /locus_tag="VE968_02465"
     CDS             7471..8247
                     /gene="paaG"
                     /locus_tag="VE968_02465"
                     /EC_number="5.3.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004300 - enoyl-CoA hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA
                     isomerase PaaG"
                     /protein_id="HZU50719.1"
                     /translation="MSYETIQFEPGAIARITLARPDRLNSFTVQMHQELREVLGKLED
                     ARVVVITGAGRGFCAGQDLNDRAVTPGEAVDLGETVEKYWSPLVRTLTSLPQPVIARV
                     NGVAAGAGANIALACDIIIAAKSAKFIQSFSAIGLIPDSGGTWALPRLVGQARALGLA
                     LTGEPLSAQDAADWGLIWKAVDDEALDLNVNAVASKLASLPPLGLAATKEMIRSSWQY
                     SLDEELERQAGAMRRLGFTEDYREGVAAFLEKRQPSFTGR"
     gene            8313..8468
                     /locus_tag="VE968_02470"
     CDS             8313..8468
                     /locus_tag="VE968_02470"
                     /inference="COORDINATES: protein motif:HMM:NF023180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3309 family protein"
                     /protein_id="HZU50720.1"
                     /translation="MLGTILIILLILLLIGAVPRWGYSRGWGYGPSGLLGIILIVVVI
                     LLLMGRI"
     gene            complement(8465..9493)
                     /locus_tag="VE968_02475"
     CDS             complement(8465..9493)
                     /locus_tag="VE968_02475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HZU50721.1"
                     /translation="MSDHSIDECALGTWLAENIDGFSGPFSLSKFPSGQSNPTYRIVA
                     ASGEYVLRRKPFGDLLPSAHAVDREFRLLTGLYPLHFPVPRPLALCEDVHVIGAIFYV
                     MDVAKGRSHANGSLPGFEPPTRRRVYEQLVDRLAELHSINPSTAGLAGFGKPGNYFER
                     QVARWTRQYRDSQTDHIEEMERLIAFLPRSLPEQSRTSIVHGDYRIDNVIFDDCGTLS
                     AVVDWELATLGDPLADFSYLAMQWVMPPDGGAGLSGLDLPALGIPTLDEIVTRYAARA
                     AVDVGANLDWYFAYNLFRLAGIVQGIKKRVLDGTASHAQASEMAKRVPMLASAAWNFA
                     ERAGGASS"
     gene            complement(9490..>10039)
                     /locus_tag="VE968_02480"
     CDS             complement(9490..>10039)
                     /locus_tag="VE968_02480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HZU50722.1"
                     /translation="DDAPHGHMEIILDNVHVPASNLLLGEGRGFEIAQGRLGPGRIHH
                     CMRTIGAAEEALEAMVRRLLSRTAFGRPLAEQGVWEERIANARIEIEMTRLLCLKAAD
                     MMDRAGNKAAQGEIAMIKVAAPLMALKIIDDAIQAFGAAGVSDDFGLARAYASIRTLR
                     LADGPDEVHRRAIARLEFKKYR"
BASE COUNT         1937 a         3158 c         2962 g         1982 t
ORIGIN      
        1 aagaaacagc gcggtcaaca tcttcgcgag tcacccgacc gttgcggcca gttccctcta
       61 tccgagcagg atcgatcccg tgctggaggc atgctcgacg aaccgacggg ctaagccgcg
      121 tttctcggcc ggctaccgtc ccggtatcgc tcgtcccagg ttgaaccgga ccacgctccg
      181 ccactgccgt cgcggacttc gcccgattgc cttggttcga gcgatcttcg gaaggagcgt
      241 caccaccgat cgcaattcgc gcaaggagcg cgcccggcac ggcctcggca tcagtctcga
      301 ggatgatctc ggcgagcacc ccggcgcccg gcgagggaac ttcctgagtc accttgtcgg
      361 tttcgagctc aacgagcgga tcattgatcg cgacaggctc accaacgcgc ttcagccacg
      421 cgcggacgac ggccttggtg ccctcctgct catcgggaac tcggacctcg atcaacttag
      481 aaccctacga gccgttctat ttcgcggcga attcgcgccg gcgaagggag tgcccactcc
      541 atgagcttgg gatgatgggg gcttggaatg tcgggcatgg taacacgggc aacgggcgca
      601 tcgagatcga ggaaagcctc gtcggcgaca acggccgcta tctcggcacc gaaaccgccc
      661 gttcgcaaat cctcgtgaac aataaggcat cgcctggtcc gccgaacgct ttcgagcacc
      721 atttcctcgt cccaaggcgc gagcgttcga agatcgataa tgtcagcgct tatgccgtcg
      781 gccgcgatct cgcttcgcgg taccatcgcg ccccaggtca cgatcgtgat cttgtcgcct
      841 tccctggttt tcttcgcccg gccgaacgga agcgcataat cgtcgcctgg ccacgggcgc
      901 cgcgcccagc tgtcgtcaag catcgcgcga tgttcaaaga acagcactgg gtcatttcct
      961 cgaaggccgc tgcgtagaag accgacggca tcctcggcat ttgagggcac cgccactttc
     1021 cagcccgggt tgtgcacgaa ttcgacctcg ttggtcatcg agtgccaagg atcgccgcat
     1081 ttgaaaaagc cgccgggaac gcggaggacc atcggcgccg caaaacggtt gtccgtccgc
     1141 caacgcatcg tcccgcaatc gtggatctgc tcggttgcgg gctcggcata tttgcgaaac
     1201 tggatctcgg gaactggcat cagtccggca agggccattc cgaccgctcg gccgacgatc
     1261 ccttcctcgt tgaggctcgt atcgaacacg cgctcgcggc cgaacttttc ctggagacca
     1321 agcgtgaccg cgtggacgcc gccttttgga ccaacgtctt cgccaaaaac cagcacgcgt
     1381 ggattggctt cgagttcctg gtcaagcacg cgccggatcg ccgttaccat gttgatgcgc
     1441 tgaccttgcg gctcagcttc ttccgtggtg ccttcaaggc tcaggccggc gcgtccgccg
     1501 acctgctgca tcgcctcttc gtaaaagaca tttcgtgtga cgctttcggg cgaggcaatc
     1561 cctcgtgcct gcgcttccgc cacggcagcc tcgacttgcc aatccgtttc gcgctcgagg
     1621 tcggaccatt gttcgtcacc aacctggtat cgcgccacat gcgccctcaa cttgggaagc
     1681 ggatcgcgcg cccactcggc ggcgatttcg gcctcgctct tgtaggcctg cgtgtcctgg
     1741 tagctatggc cttcaaggcg cggcaccgtc acccgcagca gcgccggggc acgcttggtt
     1801 cttacatggg cgacggccgc gcggaccagc ctcgcggcct cacttgggtc cgttccgtcg
     1861 ccgttgaaaa tcgtcaggcc agaaaaactt gcaaggttcg ccgcgatatc acggcccggc
     1921 gtctggtaat ccgagggaac ggatatccca tagccattat cctcgacata aattagcagg
     1981 ggcaattgtt gagtagttgc aatagttaac gctgaccaaa aaccgccggt cgcgcagctt
     2041 gcgtcgccgc caaggacgac ggcaattgca tcagaaggtc cttcgttcag aactttgtgc
     2101 ttgtaggcga tcgcctgcgc ccatccgacc gcgggcgtat attgcgctcc aaccccgccg
     2161 ctcatcggaa gcgcatgggc tccgcccgga ttgggataat tgaagacgac gccaatatcg
     2221 cggccatcgg aatagccacc ggcaagcccc atgcccgaac cgagggcatc ggcaatgggg
     2281 acaccgagcg caaggagcag cgggcgcgat cgataatagc cgcacgcggc atcgccgtcc
     2341 ttgagctcga gtccaagaag gacctgcgcc atgtcatggc cgcgcgcact gaactggtag
     2401 aggaccttct ttgccggaac gagctcctgt tcctcgatgc ggtccattgc gcggctggta
     2461 agcaccaatc gcgcgacctc gcgccaatca acttctgcag tcacccggcc ggggtcgcga
     2521 tcagccatcg tgcgctcagg cgttgagggc actgaccacg gcggcgataa atcgatcgat
     2581 ctgtgcatcg cccatgccaa cgacattgaa ccgaccgctg tcggccatgt agattgcgtc
     2641 gtcctttcga agcttcagca cctgttcctt cgacagcgga agcatcgaaa acatgccata
     2701 ctgtcgcccg atgaacgaaa gccgcgggtc cgccgcggca attctctggc ggacggcatt
     2761 gatgcgctcg cgcatcccgg caagctcaac aagccagcgg tcgtggagtt ggggatcgtc
     2821 caacacgatg cgcacgcatg cggccccgtg gtccggcggc attgaccaca tctcgcgggc
     2881 gatctggtgc aggtgcccca ttgccgtggc gctcgcttca ggcgagagcg tctttaccca
     2941 caaggaaccg acgcgatcgc gatagacgct gaagttcttg tcacagcttt gcgcgacgat
     3001 cacctcgtcg cacttgtcga gcatcagccg aacgccaaat gcatcttcat cgagcccgcg
     3061 gccgaaaccc tgataggcaa tatcaacgag cggcacgagc tcacgctcga cgaccacgtc
     3121 ggcaaccttt cgccactgtt cttccgaaag atcggcaccg gtcggattgt ggcaacatcc
     3181 atggaggagc gcgatatcgc caggttcgcc gctcgacagt gattcgagca tgtcttcaaa
     3241 gcggatcgcg ccttgtccac gctcgtaata ggcatattca accgcctgca acccgaccgc
     3301 ccggatgatc ggcgggtggt tcggccaggt tggcccgccg acaaacacgc gcgccttggg
     3361 attggcaagc gccaggagtt cgaatcccag ccggagcgca ccgcatcctc ctggcgtttg
     3421 gagtccaacg atgcgcgggt cgccggcatg gtcaccaagg atgatggggc gaagaagctc
     3481 agcgtaacgc ttgtcgcccg cactcccgag ataagccttc gtcttctgag tctccaaaag
     3541 ccgcttttcg gcttccttga tcaccttgag gattggggtg ttgccggcgc catcgcggaa
     3601 gactccgacg cccacgtcaa tcttctccgg ccgcgggtcg gcgttgacca ttccaatgag
     3661 tgcaatcagc gaatcgttgt tcaccggcgg aagatcagca aggcccctcg ccttttcgtt
     3721 cgcttgcgtc agcatgacgc gcgattagcc gagtcacgcg tcgtaatcta cagcgacccc
     3781 tgcacccagt gggacggact ggcacgtcag cacatatccc gccgcgactt cttcatcggt
     3841 aaggccgtag cgggccgcca tctcaacctt cccctttgtc actttggccc ggcacgtggc
     3901 gcacacgccg gccttgcacg cgaacggcgc agcaaggccc gccgcgcgcg cggaatcgag
     3961 aatattgccg gcggtaaacg gcactcggcg cgttcggccg tcaagcgtga cggcgacgct
     4021 gacgccctcc gcgtcggtct gcaactgtgc cagttcgcgc gctatcgcct cgggcggccg
     4081 atcggccgtg aatcgctcga tgtgaattct ttcgtttcga acattgcggt caagaagagc
     4141 gccttccgcg gcatccatca ttggccccgg tccgcagatg aaccagccat cgatttcagc
     4201 ggcgtccggc accagcatgg aaattgcgtc atcaaggcga tcccggtcga gcatgccatt
     4261 gaagagctcg atgtcctgcg cttcctggtc gagaaagtga tagatctcga gccggccgag
     4321 atatttgtcc ttgagcgacg caagcgtctc gaggaagatc accgaactgc tgtcgcggtt
     4381 gccatagatg agcgtgaaac ggctgcgcgg ctcttcgcgc agcaacgttt ttagaaggga
     4441 caggacgggc gtgatgcctg agccgcccgc aattccgacg agatgtcttt cattcgcctt
     4501 atcgaattcc gtcgtgaagc ttccgtgcgg aaccatgact tcgatcgtgt caccgggctt
     4561 tagtgcgtca ccgacccagt tcgagaacag gccgccgcca atccgcttca ccgttaccat
     4621 ccagtcggca tcggcaggcg ccgtgcaaag cgagtaattg cgccgcacct cctcgcctcc
     4681 gatcatcgcg cgcaacgtca gatgctgccc ggccttgaac ttgaacgcgc cttggagttc
     4741 cgtcgggatc tcgaaacgga tcgagtttgc ttcggcggtt tcagggacga tctccgcaac
     4801 cctaagcgcg tggaaatgag cgctcattta ccaggtcgcg tcgggatagg tgcggggaag
     4861 gaactgcatg atcgcaagca ggtgtccaag gtgctcgcta tggtggccac gtcgtccacc
     4921 aaggattggc cgctggtctg ccggcggctc gagctgcgcc tcaagcagca ccgcgccaat
     4981 ctgagaccgg tattcggctt cgaacgcgtt gggatcggga gcgatgccgc gttcaatgag
     5041 cgcttgaaga ttatcgtcga cttcgaacag ctcggggatg aaacgccagt tccagtcgag
     5101 cccttcagcc attcgcctcg agctttcttc ggtgccatcg ccaagccgga tcgtccattc
     5161 gcgggcaagc tcgcggtgat aagccacttc cttcactgcc ttgtgcgcga actcgcggag
     5221 gaactggtca cttgattgct gcaggcgttg cagaagcatg tgctgccagg tcgagtagag
     5281 caggtgccgc gcaatcgtct gggcgaaatc gccgttcggc tgctcgacga gcaggcaatt
     5341 gcgaaaatca aggacgtcac ggtggaaggc gagtcggtcg ccatcaccag cctcattcag
     5401 caggagggtt gcctggccaa cgaggtcgag tgcgaggttt gcaagactga tatcgacctc
     5461 gagcaccggc ccgtgaccgc accattcgct tagccgctgg ccaagcacga gggcgtcgtc
     5521 gccgaggcgg aggaggtaat cgatccgtgc agaatcggcc tcggacgcgg agggcgcatc
     5581 gaatgagccc gcgcccgtca ctccccttgg cacgtcgatt ggcggcaatg acgccatcag
     5641 atgtgcttca cctcgtccgg aatgtcgtag aaggtcgggt gtcggtagat cttgcttgcc
     5701 gcgggttcga acagttcgcc ggcctgatca ggatcgcttg ccacgatctc ggccgaaggc
     5761 actacccaca agctcacgcc ttccatgcgc cgcgtgtacg tgtcgcgcgc gtgagcgagc
     5821 gcgagctcgc cgtcaggagc atgaacgctg ccaacatggc gatgcgaaag gccgccctta
     5881 gagcggacga acacttccca aagtggccag tcactgctca agctgccttc ctcgcgctgc
     5941 gcttggcttc gtgcgcagcg gccgcctcgc gaacccatgc accatcgttc catgcatcgc
     6001 gccgcgcctt catccgctcc tttgcgaccg gcccttcgcc gcggacgacg gcgtagaatt
     6061 cgtcccagtc gattggacca aagtcatagc cgcctttgga ttcgttccac ttaaggtcgg
     6121 gatcggggac agtaaggccg agaaactcgg cttgcggcac cgtgatgtcg acgaacttct
     6181 gcctcagctc gtcattggtc tcgcgcttga tccgccagcg catcgactgc gcggtgttgg
     6241 ggctgtcttc gtccggtgga ccaaacatca tgaggcttgg ccaccaccag cggttaagcg
     6301 catcctgcgc catccgcttc tgctcggccg tcccgttcga aagcgcgatc atgatctcgt
     6361 agccctggcg ctggtggaaa ctctcttcct tgcagatgcg caccatcgca cgggcataag
     6421 gaccataact tgtccgctgc agcggcacct ggttcatgat cgccgcgcca tcgacgagcc
     6481 aaccgatggc accgatgtcg gcccaagtca gcgtcgggta gttgaatatc gtcgaatatt
     6541 tggctttgcc gctgtgcagc gcgtcgatca tctgttcgcg cgacgtgcca agtgtttccg
     6601 ccgcacaata gagatagagc ccgtgaccgg cttcgtcctg aacctttgca agcaggattg
     6661 ccttgcggcg aagcgacggg gcgcgcgtga tccaattgcc ttcaggcagc atcccgacga
     6721 tctcgctatg cgcgtgctgg ctgatctgcc gcgtaagcgt gcggcggtaa gcttcgggca
     6781 tccagtcctt gggctcgatg aaatcatccg ctgcaacgcg cgcctcgaat tgctcgagaa
     6841 gctcgggatc ctcgaggttc tcgatccgtg cggtcttctg aagctcggtc gtgtacatgg
     6901 ctcgcgatgt agtccgtccg ctctaaacgt tcaaatagcg accactgctc cgccaagagt
     6961 tcgcgaatag ccggtaaact cggcaatgtt gcgtccgtct tttgtccgga ccgagactcg
     7021 tgtcactcct gctcggccct ctcttgcgac ttgctgcgct tcagcaacga gcgtttctcc
     7081 ttccatcgcc ttgtcgagga agatgatcga cgcctgggcg gcaacggtcg cctcgttgcc
     7141 gccgttgcac acataagcaa aggccgtgtc ggcaagcgag aagatcattc cgccatgcgc
     7201 gattgcatga ctgttgagca tgtcgccacg caccaccatc gagaggcgtg cataaccaga
     7261 ccgcacttca tcgatcttga ttgcccacgc tgggccagtg ccctcgcccg acagcatttc
     7321 ctcagcgaca cgtcgcgcga gttcatccgg gttcatcaaa gcgacttctc ccacgactat
     7381 ccttgtttca tcatctgttt tcgtgaagga cactgctgcc attagaatgg gcaccggaac
     7441 aagttgacgc gatcaggacc gggagaacgc atgtcctacg agaccatcca gttcgaaccc
     7501 ggcgcaatag cgcgaatcac gcttgctcgg cccgaccggc tcaacagttt cacggttcag
     7561 atgcaccagg aactgcgcga ggtgctcggg aaactcgaag acgcacgagt ggtggttatt
     7621 actggcgcag ggcgcggatt ttgcgcgggg caggacctca acgatcgcgc cgtcacaccg
     7681 ggcgaggccg tcgacctcgg cgaaaccgtc gaaaaatact ggagcccgct cgttcgcacg
     7741 ctcacttccc tgccgcagcc cgtgatcgcg cgggtaaacg gtgttgccgc cggcgctggg
     7801 gccaacattg ctcttgcctg cgacatcatc attgccgcga aatcggcaaa gttcatccag
     7861 agcttttcgg caatcggcct aattcccgac agcggcggaa cctgggcgct cccgcggcta
     7921 gtcggacagg cgcgcgcact tggtctcgct ctcacgggtg aaccattgtc cgcgcaagat
     7981 gctgccgact gggggctcat ctggaaagcc gtcgatgacg aggctctcga tttgaatgtg
     8041 aacgccgttg cgtcgaagct tgcttctctc ccgccgctcg gacttgccgc aaccaaggaa
     8101 atgatccgct caagctggca atacagccta gacgaggaac tcgaacggca ggctggcgca
     8161 atgcgccgcc tcggctttac cgaggattat cgcgaaggag tcgcggcttt cctcgaaaaa
     8221 cgacagccaa gctttactgg ccgctaagcg ctgcaaccct ccctcccttt ggttcgttac
     8281 gagcttcaaa caaccatata aggaggcaag cagtgcttgg cacaatcctc atcattcttc
     8341 tcattttgct tctcatcggc gccgtgcccc gctggggcta cagcaggggc tggggctatg
     8401 ggccgtcggg tctcctcggg atcatcctga tcgtcgtcgt gatcctgctg ttgatgggcc
     8461 gaatttagga actagccccg ccggctcttt cggcaaagtt ccaggcggca cttgcgagca
     8521 ttggcacgcg cttggccatt tcgctcgcct gcgcatggct cgcagtgccg tcgagtaccc
     8581 ttttcttgat gccctggacg atgccggcga gccggaagag attataggcg aaataccagt
     8641 cgagattagc accaacgtcg accgccgcac gcgcggcgta acgggtgacg atttcgtcga
     8701 gtgttggaat gccaagagcc ggcaagtcca ggccggagag tccggcgccc ccatcgggtg
     8761 gcatcaccca ctgcatggcg agataggaaa agtctgcgag cgggtcacca agtgttgcaa
     8821 gttcccagtc aacgacggcg ctcagcgttc cacaatcatc aaagatcaca ttgtcgatcc
     8881 gataatcgcc gtggacgatc gacgtgcgcg actgctccgg caagctacgg ggaagaaagg
     8941 cgatcagccg ctccatttcc tcgatgtgat ccgtctgcga atcgcggtat tgacgagtcc
     9001 agcgagcaac ctgccgctcg aagtaattgc cgggttttcc gaagccagcg agaccagcag
     9061 ttgaaggatt gatagagtga agctccgcta aacggtcgac caactgctca tacacgcgcc
     9121 gtcgcgttgg cggttcgaac cccggaagag atccgtttgc atgagagcgg cctttagcga
     9181 catccatcac gtagaaaatt gcgccgatga catgaacgtc ttcgcacaag gcgagtggtc
     9241 gcggcaccgg aaaatgaagc gggtagagac cggtgagaag ccggaattca cggtcgacgg
     9301 cgtgggcgga cggaagcaag tcaccaaagg gcttgcgacg aagaacatat tcgcccgacg
     9361 ccgcgacgat ccggtaggtc gggttcgact ggccagaagg gaacttgctt aatgagaagg
     9421 ggcccgagaa gccgtcgata ttctcggcaa gccatgtgcc aagagcgcac tcgtcgatcg
     9481 aatggtcact caccggtatt tcttgaactc gagccgggcg attgcgcgcc ggtggacttc
     9541 gtcgggaccg tcggcgaggc gaagcgtgcg gatcgaggca taggcacgcg caaggccaaa
     9601 atcgtcggat acaccggccg cgccgaaagc ctggattgca tcatcgatga tcttgagcgc
     9661 cattagcggc gccgcaacct tgatcatcgc gatttcgcct tgagccgcct tgttgcccgc
     9721 gcggtccatc atgtcggcag cctttaggca caacagccgc gtcatctcga tctcgatccg
     9781 agcgttggca atgcgctcct cccagacgcc ttgttcggca aggggcctcc cgaaggcggt
     9841 gcgtgacagc agtcggcgga ccatcgcctc gagtgcttcc tcggctgctc cgatcgtgcg
     9901 catgcaatgg tgaatgcgtc cagggccgag ccgtccctgt gcgatttcga agccgcgccc
     9961 ttcgccgagc aacaagttgg acgcgggcac atgaacattg tcgaggatga tttccatgtg
    10021 cccatgcggc gcgtcgtca
//
LOCUS       DASRBJ010000087         6916 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_61962,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000087 DASRBJ010000000
VERSION     DASRBJ010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6916
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61962"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..189
                     /locus_tag="VE968_02485"
     CDS             <1..189
                     /locus_tag="VE968_02485"
                     /inference="COORDINATES: protein motif:HMM:NF021621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host attachment protein"
                     /protein_id="HZU50723.1"
                     /translation="NDYEALAIVAPPKALGHLRKNLHKEVERRIVCTVNKEMSGRPIP
                     DIEALLDGHTRAEELPAV"
     gene            complement(186..431)
                     /locus_tag="VE968_02490"
     CDS             complement(186..431)
                     /locus_tag="VE968_02490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50724.1"
                     /translation="MNRSATQAFVELGASPEIDDWEILIAAILEEAVELSRVERSSLA
                     ARILALGGYVGADAPSVDNERSRLAMRLAARIGDLAT"
     gene            complement(557..1150)
                     /locus_tag="VE968_02495"
     CDS             complement(557..1150)
                     /locus_tag="VE968_02495"
                     /inference="COORDINATES: protein motif:HMM:NF025013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4142 domain-containing protein"
                     /protein_id="HZU50725.1"
                     /translation="MRKLGILLGGAIALAACSTTPRPVAPVDLTNPLMAPGYLAQAES
                     SDQFEIQSAQLAEQASQNPAVRNFAGMLITDHTQSTQMLMAAAQSARITPPPPTILPP
                     QQAMLDQLRAAGTGPSFDQAFQQAQIQAHQQALALHQNYAQSGDVPALRATAAQIVPV
                     IQKHLSMAEALQVTAPPPPPPPPPPPPPPVRRSGERG"
     gene            complement(1244..1690)
                     /locus_tag="VE968_02500"
     CDS             complement(1244..1690)
                     /locus_tag="VE968_02500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HZU50726.1"
                     /translation="MATRKLRIFTIGYEGTTVAELIAALQKVGIKRLIDVRALPLSRR
                     PGFSKSPLRAALEEAGIDYVHLKALGTPAEGRAAARAGRHADLERIYAGQLELPEAIA
                     QGALMLELAREKPSALLCMERDPVHCHRSLLLIALASDAEAVHLYA"
     gene            1807..3138
                     /gene="trmFO"
                     /locus_tag="VE968_02505"
     CDS             1807..3138
                     /gene="trmFO"
                     /locus_tag="VE968_02505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003051231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate--tRNA-(uracil(54)-
                     C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO"
                     /protein_id="HZU50727.1"
                     /translation="MAFDIQVIGGGLAGSEAAWQLAEAGFRVRLSEMRGGGDRTPAHE
                     TERLAEMVCSNSFRSDDPEHNAVGLLHQEMRVLRSLVMTAADEHRVPAGSALAVDREL
                     FSAKITRSIEQHPRIELVRERIDTLPHNPAIIATGPLTSPTLADAIAAETGLGALAFF
                     DAIAPIVHRESINMDVAWMAARWDKGGKDYINCPLDQEQYEAFVSALLDGEKMPFHEW
                     ETDTPYFEGCMPIEVMASRGAETLRYGPMKPVGLDNPRTGRWPYAVVQLRQDNKFGTL
                     WNMVGFQTKLKHGEQVRIFRTIPGLENADFARLGGIHRNSFINSPKLLDGELRLKSKP
                     NIRFAGQITGCEGYVESAAVGLLAARFAAAELQGARLTAPPPETALGALLGHITGQAN
                     SETFQPMNVNFGLMPPVPGRWKSTSRKKAYTDRAREALQQWVSELADREAA"
     gene            complement(3135..3551)
                     /locus_tag="VE968_02510"
     CDS             complement(3135..3551)
                     /locus_tag="VE968_02510"
                     /inference="COORDINATES: protein motif:HMM:NF016807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BLUF domain-containing protein"
                     /protein_id="HZU50728.1"
                     /translation="MSLKSLTCTSLAGLDLQADDLEAIHRTARELNALDGITGLLIFN
                     GTHFLQIIEGAPNAIQDLINRLRLDHRHSSIEVRDEQLIDERSFADWSMELVRVSASY
                     FEAKETVTDRLPPTTTPDVRNRVIRMTEAISGVVSF"
     gene            complement(3763..4428)
                     /locus_tag="VE968_02515"
     CDS             complement(3763..4428)
                     /locus_tag="VE968_02515"
                     /inference="COORDINATES: protein motif:HMM:NF012705.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene/phytoene synthase family protein"
                     /protein_id="HZU50729.1"
                     /translation="MAERELDPDRRLALEQLPRDIRPSFEALWSLDRAFADIISTTSD
                     PRLGAIRLAWWRERLEALDRGDPVPAEPRLHAVARHLVPAAGSGDELSQLEDAWLNML
                     HPFPWGFSEADGVRLRGRILFRVGARLLEGDPNRAMAAGELWSLIDVASHCSNEASRN
                     YLLDEARKVVLGGKTPRTLRSLTIITAVAVEGVRRPSSSLARGLAALSHRLTGRIPQL
                     PPK"
     gene            complement(4421..5869)
                     /locus_tag="VE968_02520"
     CDS             complement(4421..5869)
                     /locus_tag="VE968_02520"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019052563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex E1 component
                     subunit beta"
                     /protein_id="HZU50730.1"
                     /translation="MATELKMPALSPTMEEGTLAKWLVKEGDEIKSGDILAEIETDKA
                     TMEFEAVDEGKLAKILVPEGTDGVKVGQPIALLAEDGEEFADRSAPAASPTPVAAAKD
                     EPKPAMASEPSVPAPSSQQDESTPTPHVFETAARDLVADVSKTHDEPEVPEGTPLVTV
                     TVREALRDAMAEEMRRDERVFVIGEEVAEYQGAYKVTQNLLQEFGPKRVVDTPITEYG
                     FAGLGTGAAMGGLRPIVEFMTFNFAMQAIDHIINSAAKTNYMSGGQMRCPIVFRGPNG
                     AAARVAAQHSQNYAPWYAHVPGLIVIAPYSAADAKGLLKAAIRTDDPVVFLENELLYG
                     QHFDVPQLDDYVLPIGKARVVRPGKDVTIVSYSIGVGVALEAAQELVAQGINAEVIDL
                     RTLRPLDKSTVLASLKRTNRMVIVEEGWPECSISSELIAIAMTEGFDDLDAPVLRVTD
                     ADVPLPYAANLEKMALIKASEVVEAAKAVCYR"
     gene            complement(5869..6876)
                     /gene="pdhA"
                     /locus_tag="VE968_02525"
     CDS             complement(5869..6876)
                     /gene="pdhA"
                     /locus_tag="VE968_02525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045250 - cytosolic pyruvate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HZU50731.1"
                     /translation="MPEIERPPQPQRYAADKDQLLQFYREMLLIRRFEERAGQLYGLG
                     LIGGFCHLYIGQEAVAVGLQSAMTVGKDSVITGYRDHGHMLAYGIDPKVIMAELTGRA
                     AGISKGKGGSMHMFSVDHGFYGGHGIVGAQVPLGTGLAFKHKYSEDGGVCLTYLGDGA
                     VNQGQVYEAFNMAKLWDLPVIYAIENNQYAMGTSLKRSAAEPLLYRRGEAHRIPGLQV
                     DGMDVLAVRGAAEVALDWTRGGKGPIIIEFLTYRYRGHSMSDPARYRTREEVQGVREN
                     RDPITHAERELESMGVKEEELKAIDKEIKDIVVGAAKFAEDAPEPAPSELYTDVLVGS
                     Y"
BASE COUNT         1366 a         2090 c         2080 g         1380 t
ORIGIN      
        1 aacgactacg aagcgctcgc aattgtcgct ccgccgaaag ctctcggtca tctgcgcaaa
       61 aatctccaca aggaggttga gcggcggatt gtttgcaccg tgaataagga aatgagcggc
      121 cggcccatcc cggacatcga agcgctgctc gacggtcata cgcgcgccga agagctcccg
      181 gctgtctaag tagcgagatc cccgatccgc gccgccaagc gcatagcgag acgcgagcgc
      241 tcattatcaa cgcttggcgc gtccgcaccg acgtagccgc caagcgcaag tatgcgcgcc
      301 gcgagggatg atcgctcgac gcgacttagc tcgactgcct cttcaaggat ggcagcaatc
      361 aagatctccc aatcatcaat ctcgggactt gcgccaagtt cgacaaaagc ctgtgtagcg
      421 gaacggttca tcagcattcg cgctactgat acgcacgggc agcgagcacc ataactttcg
      481 ttaaggtgcg gtttgtcgtc gacgagcgga ctgcgcccgg ttcctcaaca gaaccgggcg
      541 cgagatcaac ctcgagttac cctcgttccc ccgaacgcct gactggaggc ggcggtggcg
      601 gcggcggtgg tggcggcggc ggcggggccg tgacttggag cgcctcggcc atcgacaaat
      661 gtttctgaat gaccggcacg atctgcgccg ccgttgcgcg cagtgccggc acgtcaccgc
      721 tttgcgcata attctggtgc aaagcgagtg cctgctgatg ggcctggatc tgcgcttgct
      781 ggaaagcctg gtcgaacgaa ggcccggttc cggccgcacg aagctggtcc agcatcgcct
      841 gttgcggcgg aaggattgtt ggtggcggcg gtgttattcg cgccgactgc gctgccgcca
      901 tcagcatctg cgtggactgg gtgtggtcgg tgatgagcat gccggcaaaa ttacggacag
      961 ccggattttg cgacgcctgc tccgcaagct gtgccgattg gatctcgaac tggtccgagc
     1021 tttccgcttg agcaagatag ccgggcgcca ttaaaggatt ggtgaggtcg accggcgcaa
     1081 ccggacgtgg tgtcgtcgaa caggctgcga gggctattgc cccgccgagc aagatcccca
     1141 gtttcctcat cgcgcattct ccctctggtt tgctattttg gcgattgttg cgacaggcaa
     1201 accggccagc gaacgcgcgg ttcctaaggt tgatctaacc cgactatgcg tagagatgca
     1261 ccgcttcggc atcgctcgcg agcgcgatca gcaacaggct ccgatgacaa tggacagggt
     1321 cgcgctccat gcacaggaga gcgcttggct tttcgcgcgc aagctcgagc atcagcgcac
     1381 cttgtgcaat cgcttcggga agttcgagct gcccggcgta aattcgctcg agatcggcgt
     1441 gcctgcccgc gcgcgccgcc gccctgccct ccgccggagt cccaagtgcc ttgagatgga
     1501 catagtcgat acccgcttcc tccagtgctg cacggagcgg cgacttcgag aagcccggac
     1561 gccgcgaaag cggaagcgcg cgaacatcga tgagccgctt gatgccaact ttctgaagag
     1621 cggcgatgag ctcggcgacg gtcgtgcctt cgtatccgat ggtgaagata cgtagcttcc
     1681 gtgtcgccat gctgaggcca gttcctgcat ccggagctcg aatgcaactg cgctcttgac
     1741 gaaattttac agtcgggtcg agcttgtggg tgacgctcgg ttgcgtgcgc attaattgcg
     1801 ctttgcatgg cattcgacat ccaagtcatt ggcggcggtc tcgccggaag cgaggcggca
     1861 tggcaactcg ccgaagcggg tttccgcgtg cgccttagcg aaatgcgcgg cggcggcgac
     1921 cgaacgcccg cgcacgagac cgagcgcctc gcggaaatgg tttgctcgaa cagctttagg
     1981 tccgatgacc ccgaacacaa tgcagtcggc ctgctccacc aggaaatgcg cgtgcttcga
     2041 tcgctcgtca tgaccgcggc agacgagcac cgggttccag ccggatcggc gctagcggtg
     2101 gatcgcgaac tattctcggc gaagattact cgctcaatcg agcagcaccc gaggatcgag
     2161 ctcgtacgcg aacggatcga cacgctgccg cataatccgg ccatcattgc gacgggccct
     2221 ctcacgagcc cgacgctggc ggacgccatc gctgccgaga cagggcttgg agcacttgca
     2281 ttcttcgacg ctattgcgcc gatcgtccat cgcgaaagca tcaacatgga cgtcgcgtgg
     2341 atggccgcgc gctgggacaa gggcggcaag gattacatca attgcccgct cgatcaggag
     2401 cagtatgagg ccttcgtcag cgcgctgctc gatggcgaga aaatgccatt ccacgagtgg
     2461 gagacggaca cgccctactt cgagggctgc atgccaatcg aggtcatggc atcgcgcggc
     2521 gctgaaacat tgcgttatgg tccgatgaag cccgtcggtc tcgacaaccc gaggaccggc
     2581 cgctggcctt atgccgtggt tcagctgagg caggacaaca aatttggcac attgtggaac
     2641 atggtcggct tccagaccaa gctcaaacat ggcgagcagg tacgaatctt ccgaaccatt
     2701 cccgggctcg aaaatgcgga tttcgctcga ctcggcggca ttcaccgcaa cagtttcatt
     2761 aattccccga agttattgga tggggaactt cgcctcaaat caaaaccgaa cattcgcttc
     2821 gcaggccaga tcaccggttg cgaaggctat gtcgaaagcg cggccgtggg cctcctcgca
     2881 gcgcgcttcg ctgccgccga gctccaagga gcaaggttaa ccgcgccgcc gccggaaacg
     2941 gcgctcggcg cgcttctcgg ccacatcacc ggtcaggcga actccgagac cttccagccc
     3001 atgaacgtga acttcggcct gatgccgccg gtcccgggac gctggaaaag caccagtcga
     3061 aagaaagcct atacggaccg cgcccgcgaa gcactgcagc aatgggtgag cgaacttgcg
     3121 gatcgcgagg cggcttagaa acttaccacc ccggagattg cttcggtcat tcggatcacg
     3181 cgattgcgaa cgtcaggcgt ggtcgttggc ggcaggcgat cggtcacggt ctccttcgcc
     3241 tcgaaatagc tcgcgctgac gcgcacgagc tccattgacc agtctgcgaa actgcgctcg
     3301 tcgatcagct gctcgtcccg aacttcaatt gagctgtgcc ggtgatctag cctgaggcgg
     3361 ttgatgagat cctgaatcgc gtttggtgct ccctcgatga tctgaaggaa gtgcgtgccg
     3421 ttgaagatca agagcccggt tatcccatca agggcgttaa gttcgcgggc ggttcgatgg
     3481 atggcttcca gatcatcggc ctggagatcg agaccggcaa ggctggtgca ggtcaatgac
     3541 ttgagtgaca tcaatcggcc ttagggctgc gcggacttgt cgcaagctct ttccgatcag
     3601 caggtctatt gctcagttag gatccgaccg ccgggacaga atgagccgtc aacagcggtt
     3661 cgctcgcaag cgtgacggcg ggaacggaag cgctgcggct ttccgcttga gcttggtcga
     3721 agcgcgcctc gatggtcatt cggcttcatc gcccgcgggt gattacttgg gaggaagttg
     3781 cggtatccgg cccgtgaggc gatgggaaag cgcggcaagt ccgcgcgcaa ggctgctcga
     3841 tggccgacga actccttcca cggcaactgc tgtgatgatc gtgagagacc gtagcgttcg
     3901 cggcgtcttc cccccgagaa ccacttttcg agcctcatcc aggagatagt ttcgcgacgc
     3961 ctcgttgctg cagtgggatg caacgtcaat gagcgaccaa agctcgccgg cggccattgc
     4021 gcgatttgga tcaccctcca aaagtcgagc accgactcga aataaaattc ttccgcgaag
     4081 ccgcacgccg tcggcctcgc tgaagcccca tgggaacggg tgaagcatat tgagccacgc
     4141 gtcctcgagc tgtgaaagct cgtcgccgct tcccgccgcc gggacgaggt gcctggcaac
     4201 cgcatgaagc cgtggctccg ccggtaccgg gtcgccacga tcaagagcct cgagccgttc
     4261 cctccaccat gcaagacgga tagcaccgag acgcgggtcg ctggtcgtcg agattatgtc
     4321 cgcgaacgcc cgatcgaggc tccacaatgc ttcgaatgac ggacgaatgt ctcgcgggag
     4381 ctgctcgagc gcgagtcggc gatccgggtc tagctcccgt tcagcgatag cagacggcct
     4441 tggccgcctc gaccacttcc gacgctttga tcagcgccat cttttcgagg ttggccgcgt
     4501 aaggaagcgg tacgtcagcg tcggtcacgc gcaggacagg agcatcaaga tcatcaaagc
     4561 cttcagtcat cgcaattgca atgagctcgg acgagattga gcattcgggc cagccctcct
     4621 cgacgattac catgcgattg gtacgcttga ggcttgcgag gaccgtcgac ttgtcgagtg
     4681 ggcgaagcgt tcgaagatcg atgacctcgg cgtttatgcc ttgagcaacg agttcctgcg
     4741 ccgcttcaag agcaacaccg acaccgatgg aatagcttac gatcgtcacg tccttgccgg
     4801 gacgcacgac tcgggccttg ccgatgggca gcacataatc gtcgagctgc ggtacgtcga
     4861 agtgctggcc gtacaggagc tcattttcaa ggaaaacaac gggatcatcc gtgcggatcg
     4921 ccgccttgag aagtcccttg gcgtcggccg cgctgtacgg cgcgataacg atcaggcctg
     4981 gcacgtgggc ataccaaggt gcgtagttct ggctgtgctg cgccgcgact cgagccgctg
     5041 cgccattggg cccgcgaaag acgatcggac agcgcatttg accgccggac atataattcg
     5101 tcttcgccgc agaattgata atgtgatcaa tcgcttgcat ggcgaaattg aaagtcatga
     5161 actcgacgat cgggcgaaga ccgcccattg ccgcgcccgt tcccaacccg gcaaatccat
     5221 attcggtaat cggcgtgtca acgacgcgct tcggaccaaa ttcctgcaac aggttctggg
     5281 tcaccttgta cgcgccctgg tattcggcga cctcctcgcc aatcacgaag acgcgctcgt
     5341 cgcgacgcat ttcttcggcc atggcgtcgc gaagcgcttc gcggaccgtc accgtcacaa
     5401 gcggcgtacc ttcgggcact tcaggttcat cgtgggtctt cgagacatcc gcgaccagat
     5461 cgcgagcggc cgtttcgaag acgtgcggcg ttggtgtgct ctcgtcctgc tgcgaggaag
     5521 gtgcaggcac ggagggctcc gaagccattg ccggcttcgg ttcgtctttg gcggcagcga
     5581 caggagtggg cgaagccgct ggtgccgatc gatcggcgaa ctcctcgccg tcctcagcga
     5641 gcagtgcaat gggttggcca accttcacgc cgtcggtgcc ttcggggacg agaattttcg
     5701 caagcttgcc ctcgtcgacc gcctcgaatt ccattgtcgc tttgtcggtc tcgatctccg
     5761 caagaatgtc cccggacttt atctcgtcac cttccttgac gagccatttg gcgagggtcc
     5821 cttcctccat ggtcggcgaa agtgcaggca ttttgagttc ggttgccatc agtagctccc
     5881 caccaaaacg tcggtgtaga gctcggatgg agcaggttcc ggcgcatctt cagcaaactt
     5941 cgcagcacca accacgatat ccttgatttc cttgtctatt gccttgagct cttcttcctt
     6001 tacgcccatt gattcgagtt ctctttcagc atgcgtgatc ggatcacgat tttcgcgaac
     6061 accctggact tcctcgcgtg ttcggtaccg cgccggatcg gacatcgaat ggccgcgata
     6121 gcggtaggtt aggaattcga tgatgattgg gcccttgcct ccccgggtcc agtcgagcgc
     6181 gacctcagca gcaccccgaa cggcaaggac gtccatacca tcgacttgaa gaccggggat
     6241 gcgatgcgcc tcgccccgcc gataaagcaa cggctctgcc gcggagcgct tcagggacgt
     6301 tcccatcgca tattggttgt tttcgatcgc gtagatgact ggaagatccc acagcttggc
     6361 catgttgaac gcttcgtaga cctgaccctg gttgacggcg ccatcgccaa gataggtgag
     6421 gcacacgccg ccatcctcgc tatacttgtg cttgaacgcg aggcctgtcc cgagcggcac
     6481 ttgcgcccca acaatcccat gaccgccgta aaatccatgg tcgacgctga acatgtgcat
     6541 cgagccgccc ttgcctttcg aaatgccggc tgctcgaccc gtgagttcgg ccatgatcac
     6601 cttgggatca attccataag caagcatgtg accatgatca cgatatcccg tgatcacgct
     6661 atccttaccg acggtcattg ccgattgaag cccgacggca accgcttctt ggccgatgta
     6721 gaggtgacag aagccaccga tcagcccaag tccgtagagc tggccggcgc gctcctcgaa
     6781 gcgccggata agaagcatct cacgatagaa ttgtaagagt tggtccttgt cggcagcgta
     6841 tcgttgcggt tgaggcggac gctcgatctc gggcacttcc ggtttggacg acacagcggc
     6901 tttcttcgcg gaacgc
//
LOCUS       DASRBJ010000088         7097 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_568695,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000088 DASRBJ010000000
VERSION     DASRBJ010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7097
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_568695"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..666
                     /locus_tag="VE968_02530"
     CDS             <1..666
                     /locus_tag="VE968_02530"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HZU50732.1"
                     /translation="RKKNIIANPNCSTAQLVVALKPLHDAAKIKRVVVATYQSVSGAG
                     KKGMDELFEQSRNIFVGDPNEPVFFSKQIAFNVIPHIDTFLDDGSTKEEWKMVVETKK
                     ILDPSIKVTATCVRVPVFVGHSEAVNIEFENEISADEARDILREAPGVMVVDKREAGG
                     YVTPVEAVGDYATYVSRIREDSTVENGLSLWVVSDNLRKGAALNAVQIAELLGRKHLQ
                     KAA"
     gene            complement(667..1326)
                     /locus_tag="VE968_02535"
     CDS             complement(667..1326)
                     /locus_tag="VE968_02535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+-dependent dioxygenase"
                     /protein_id="HZU50733.1"
                     /translation="MYRILQLLTESEIAECRRIAASAQFVHGRITNPHMKAKQNEQLH
                     EPQAYQKSSQLLLQAFGRSEEFREFAFPVAIAPPMITRYQPGMHYGAHADSAFIQLPG
                     GSLRSDLSCTIFLNEPESYEGGALHIELGDAEMQFKLPPGLAVIYPSDTLHQVDPVTK
                     GERLVAITFIQSRIQDPFRRNLLFNLNEVAALEGLNMRQENFSRLQLVQNQLLRYWGE
                     K"
     gene            complement(1327..2337)
                     /locus_tag="VE968_02540"
     CDS             complement(1327..2337)
                     /locus_tag="VE968_02540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50734.1"
                     /translation="MSSKPTAEEIALSARWLAQALDPARGVVRLVAMDRESYRSASFL
                     DDRLMQLPVDAQIITWPEIEAAVAGNLRTDARWIFHIGHVGSTLAARLLGEIDGVLAI
                     REPRLLRDVAMAPQEVRPRYIAPVPKLMSRTFSSQEVACVKATSFASEIAPQLVPRGE
                     RALFMYARPRNYVCTILAGENSLKELRALEQYRTERLVARGIAFPPLGNDAERASAAW
                     ACEMTALEAAAGTMTDSLVMWCDFDAMLGALPKQLRDIAAFFGFEVTEASIEEIANGP
                     LMRRYSKDLSYEYSPNLRQQLIDQELRLQGTQIDTALAMLARAAEKSPLLSQALSRAE
                     GM"
     gene            2424..2831
                     /locus_tag="VE968_02545"
     CDS             2424..2831
                     /locus_tag="VE968_02545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010164165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HZU50735.1"
                     /translation="MRFTAMIHDHDAYLCHCRMCQRSTGSISIAFKSVKQDEMRWEGS
                     PDWYDSSPIAERPYCRECGTSLGFRFKKGSEHMDLTVASFDDPSAFVPRHHFGAESMH
                     RAWLNTEGLSEIRTADYEKLVDKWIEATGEFPG"
     gene            2828..3583
                     /locus_tag="VE968_02550"
     CDS             2828..3583
                     /locus_tag="VE968_02550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008830018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HZU50736.1"
                     /translation="MSELSTKYWTASDGIQLAYHELGEGRPVVLLHGLFSDAHMNWIK
                     FGHAQRICERGFRVIMPDLRAHGLSSRPHEPEFYPRGILARDLRELVQLLGLGEFDLG
                     GFSLGARTTVEGVGEGLRPRRAVLGGAGLEGLEHWERRKHFFLEAIESFDRVPRGDPH
                     WLSIQFMKSQKIDRVAAALLLESFANAFVEWLSAFTMRTLVVCGDEDEDNGSAEDLAS
                     ALPDAKFEEVPGTHMSSVTKPEFGEAIASFLGE"
     gene            complement(3635..4000)
                     /locus_tag="VE968_02555"
     CDS             complement(3635..4000)
                     /locus_tag="VE968_02555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50737.1"
                     /translation="MDLARDRPIAAAAVAAGAAAAGLFLWSRRSQISDQLSNLSDQIG
                     EWTESMGSGSADQLSSSDDTGGYATSGTSGMRSSSRGSARGMSETGGGNSTLGASTGG
                     GGTSASASGRGRARSTPTI"
     gene            complement(4246..4734)
                     /locus_tag="VE968_02560"
     CDS             complement(4246..4734)
                     /locus_tag="VE968_02560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008603114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HZU50738.1"
                     /translation="MTIQVGDRLPDVPLTIATADGPKPTTTADFFANKRVALFAVPGA
                     FTPTCSARHLPSYVDKASELKKNGIDEIACISVNDPFVMAAWGQRDASSDITMLADGN
                     GAFSDAVGLSFDGSQFGMGKRSQRYSMIVNDGIVEQLNVEQPGEYRASSAETMLDQLA
                     TA"
     gene            4836..5411
                     /locus_tag="VE968_02565"
     CDS             4836..5411
                     /locus_tag="VE968_02565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HZU50739.1"
                     /translation="MVDEPSFLSGKLLLAMPGMADPRFERAVIAMCVHDENGAIGVGI
                     GHKRAGITFRGLLRQLDIDPAEAPDCAVHHGGPVEPGRGFVLHSTDWGGQDTLHVVSG
                     AGKIFAMTGTIDVLRAIAERRGPKHWIVALGYAGWGEGQLDEEMTRHGWFAAQADEGI
                     LFDTPTDERWGAAFKAEGIDPRLLASETGAA"
     gene            5486..6454
                     /locus_tag="VE968_02570"
     CDS             5486..6454
                     /locus_tag="VE968_02570"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HZU50740.1"
                     /translation="MAKFFETWRGWLLAALLVGGIIVAVVHWGDVKQFAKLLTEAKPL
                     WLLVATILQLGTYFGLAAQWWVVLRRGRSPEGVGDLLRLTFAKHFADQVVPTAGVSGN
                     VLLVDRLVTLGVPRSNAVAALLLQVIAYYLSYALGALWVLVVLWWKSRMSFLLSGAVI
                     IFLVVACGIPALTLWLHRRGQERIPRWIARWSKAKHFFELIGEAPRELVRDPWLIGCI
                     TLLNLAVFIADAATMQTCLIALGVHAPLSAGYVAFMIASIAVILGPIPMGLGSFEAVS
                     IAMLRLFGVPFEAALSATLLFRGFTLWLPLIPGGILLREEMKPAEA"
     gene            complement(6465..>7097)
                     /locus_tag="VE968_02575"
     CDS             complement(6465..>7097)
                     /locus_tag="VE968_02575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50741.1"
                     /translation="DQHYTVQFIQAQILERHFSAFSDPRNLLSWGHLMLNDVSAVAAG
                     RVRQIVLVRDPYDWVIARARFFLSDEFGGFEILKEGSLSVDALLNMMIFGVHDKTPPL
                     ASMYVYNALAWLGTGAYLLRYEDLVDAVKNLDTDSADEFFSNLFSAAGIEKPADWRER
                     VRIGSDRKQSGTARENLTGVDVEFPPHLPELQKKMVDLVAPGLRELLGYA"
BASE COUNT         1368 a         2047 c         2167 g         1515 t
ORIGIN      
        1 cgcaagaaga acatcatcgc caatccaaac tgctccaccg cacagcttgt cgttgctctg
       61 aagccgctcc acgacgcggc aaagatcaag cgcgtagtgg ttgcgacgta ccaatccgtt
      121 tcgggcgccg ggaagaaggg catggacgag ctctttgagc agtcacgcaa catattcgtc
      181 ggcgatccga acgagccggt gttcttcagc aagcaaatag ccttcaacgt catcccccac
      241 atcgacactt tccttgacga cggttcgacc aaggaagagt ggaagatggt cgtcgaaact
      301 aagaagattc ttgatccctc gatcaaggtg acggcaacct gtgtccgagt gccggtcttt
      361 gtcggtcatt cggaagccgt gaacattgaa ttcgagaacg aaatttcggc ggacgaagca
      421 cgcgacatcc tgcgcgaagc tccgggcgtg atggttgtcg ataagcgcga ggccggagga
      481 tatgtgacgc cggtcgaggc ggtcggcgac tatgcaacct atgtcagccg gatccgcgaa
      541 gattcgacgg ttgaaaatgg cctcagtctg tgggtcgtga gcgacaacct tagaaagggt
      601 gctgcactca acgccgtcca gatcgcggaa ctgcttgggc gcaagcactt gcagaaggca
      661 gcttagctac ttctcgcccc aatagcgcag cagctggttc tggacgagtt gtagacgcga
      721 gaagttctcc tggcgcatgt tgaggccttc gagtgccgcc acctcgttca agttgaagag
      781 aaggttgcgc cggaacgggt cctggatccg gctctggatg aacgtgatcg caaccaatcg
      841 ctcgcccttg gtaactgggt cgacttggtg cagcgtgtcg gacgggtaga ttacggctag
      901 tcccggcggc agcttgaact gcatctcggc gtcgcccagt tcaatgtgga gtgcgcctcc
      961 ctcgtaggat tccggttcgt tcagaaagat cgtgcaactt agatcgctcc tgagggaacc
     1021 tccggggagc tggatgaacg cagagtccgc gtgagcgcca tagtgcatgc ccggttgata
     1081 gcgggtaatc atcggcggag cgatcgccac cgggaacgcg aattcgcgga actcctcgct
     1141 tcggccgaaa gcctgcaaca gaagctgcga gcttttctga tacgcctgcg gttcgtgcaa
     1201 ctgctcgttc tgcttcgcct tcatgtgcgg gttcgtgatg cggccatgaa cgaactgcgc
     1261 actcgcggcg atgcggcgac actcggcgat ttcgctttcg gtcagaagtt gcaaaattcg
     1321 gtacattcac attccttcgg cgcggctcag cgcctggcta agtagcggcg acttttcggc
     1381 tgcacgggcc agcatggcaa gggcagtatc gatctgggtc ccttggagcc ggagttcctg
     1441 gtcaatcaat tgctgacgca gattgggact atattcgtaa ctaagatcct tggaatagcg
     1501 gcgcatcagt gggccattgg cgatctcctc gatcgacgct tccgttacct cgaagccgaa
     1561 gaaggcggcg atgtcccgga gttgtttcgg caaggcgcca agcatcgcgt cgaaatcgca
     1621 ccacatcacg aggctgtcag tcattgtgcc ggctgccgct tccagcgccg tcatttcgca
     1681 cgcccaagcg gcggatgcgc gctcggcatc gttgccaagt ggaggaaatg cgatcccccg
     1741 tgcgacgagg cgctctgttc gatattgttc gagggcccgc aactccttca ggctgttttc
     1801 gccggcgagg atggtgcaga cgtaattacg cggccgcgcg tacatgaaga gtgcacgctc
     1861 gcctcgcggc accagctgtg gcgcgatctc actcgcaaaa ctcgttgctt taacgcacgc
     1921 gacttcttgg gaagagaagg ttcgagacat gagcttggga acaggcgcga tatagcgcgg
     1981 tcgtacttcc tggggcgcca tcgccacatc gcggagcagt cgtggttcgc gaatggcaag
     2041 cacgccgtcg atctcgccga gcaaccttgc ggccaaagtc gaaccaacat gaccaatgtg
     2101 gaaaatccac cgcgcatctg ttcgaagatt accggcaacc gctgcctcga tctccggcca
     2161 ggtgatgatc tgtgcatcaa cgggtaattg catcagtcga tcatcaagaa agcttgcgga
     2221 gcggtagctt tcacgatcca tcgcgacgag gcggacaacg ccccgtgctg gatcgagcgc
     2281 ttgggcaagc cagcgggcac taagtgcgat ctcctcggct gttggtttac tggacatggc
     2341 gccccttaac cgcgcaagag ccgctcacaa agggagcaag caatatggac gaagcgatga
     2401 cgggaggatg tgcgtgcggg cgcgtgcgat tcacagcgat gatccacgac catgatgctt
     2461 atctttgcca ctgccgcatg tgccagcgtt caaccggatc aatctcgatt gcgttcaaga
     2521 gcgtcaagca ggacgaaatg cgctgggagg gatcacccga ctggtatgac agttcgccga
     2581 tcgcggagcg gccatattgt cgggaatgcg gcacctcgct cggctttcga ttcaagaaag
     2641 gcagcgagca catggacctc acggtcgcct cgttcgatga tccctcagcc ttcgttcccc
     2701 gccatcattt tggagccgaa agcatgcacc gggcgtggct taacaccgag ggactctccg
     2761 agatacgcac ggccgattat gaaaagctcg tggacaaatg gatcgaggcc acgggtgagt
     2821 tcccgggatg agtgagctca gtaccaaata ttggacggcg tccgacggga tccagctcgc
     2881 ttatcacgag ctcggtgagg gaaggcctgt cgttcttcta cacggcctct tttccgatgc
     2941 gcacatgaac tggatcaagt ttggccacgc gcagcggata tgcgaacgcg gcttccgcgt
     3001 aatcatgccg gatctgcgtg ctcatgggct cagcagcagg ccccatgaac ccgaatttta
     3061 tccgcgcggc attctcgccc gcgacctgcg cgaacttgtg caactgctag gccttggcga
     3121 gttcgacctt ggcggctttt cgcttggtgc acggactacc gtcgaagggg ttggcgaagg
     3181 cttgcggccg cgccgggcgg ttcttggcgg tgccggcctc gagggactcg agcattggga
     3241 acgccgaaag cattttttcc ttgaagcgat cgaatcgttt gatcgcgtgc cgcgtggtga
     3301 cccacactgg ctatcgattc agttcatgaa gagtcagaag atcgaccgcg tcgccgctgc
     3361 gctgctcctc gagagcttcg ccaacgcctt tgtcgagtgg ttgtcggcct tcacgatgcg
     3421 tacgctcgtg gtgtgcggcg acgaggacga ggataatggc tcggctgagg atcttgcatc
     3481 ggctttgcca gacgcaaagt tcgaggaagt accaggcacg cacatgagtt cggtcaccaa
     3541 accagagttc ggcgaagcga tcgcaagctt cctcggcgaa tgaataaggg ggcgtgttgc
     3601 gcccccttga tgcttccttc ccggaagact ttggctagat tgttggcgtc gagcgcgcgc
     3661 gaccacgacc actagcagag gccgacgtgc cgcctcctcc agtagaagcg ccgagggtcg
     3721 agtttccgcc gcctgtctcg ctcattccgc gcgcgctgcc acgactcgat gatcgcattc
     3781 cgctcgtccc ggacgtcgca tatcctccgg tgtcgtcgct cgatgaaagc tgatcggcgc
     3841 tgcctgagcc catgctctcg gtccattcgc ctatctgatc ggaaagattg ctaagttgat
     3901 cgctgatctg ggatcgtctt gaccaaagga acaatccagc tgccgcggca ccggccgcaa
     3961 cggctgccgc agcgatcggg cgatcacgtg ccagatccat gactccgctg ccgctgctgc
     4021 gactgctgct tccaccactg ctgctgctgc tgcggccgct cgaactgcgt ccacctgtgt
     4081 tgctgcggct gttacctcca cgactgttcc ttgccatcat tgcttctcct tgatgatttc
     4141 gcactcgaat cagttaaacg atcgagagcg atcaccgttt cgagtctcga aggaaaacga
     4201 gcgccaaggg gttgctgagc gtcggcgagc ggctggaacg gccggtcagg cggttgcgag
     4261 ctggtccagc atcgtctccg cgctcgaagc ccggtattcg ccgggctgtt cgacattgag
     4321 ctgctcgacg atcccgtcgt tgacgatcat cgaatagcgt tgcgagcgct tacccattcc
     4381 aaactgactt ccatcgaacg acaggccgac cgcgtcgctg aaagcaccgt tgccatcggc
     4441 gagcatggtg atgtcgctgc tggcgtcgcg ctggccccag gccgccatca cgaacggatc
     4501 gttgaccgag atgcatgcga tctcgtcgat tccgttcttt ttgagttcgc tcgccttgtc
     4561 gacgtaggat gggagatgac gcgcggagca ggttggggtg aacgctccag gtactgcaaa
     4621 cagggcaacg cgcttgttgg cgaaaaagtc cgctgttgtc gtcggcttcg ggccgtcggc
     4681 cgtggcgatc gtcagcggca cgtcgggaag tcgatcacct acttggatcg tcatttgcaa
     4741 gctcctccgg ggtaacaggt gaaccgcgcc ttaggcctgc tgtatggcgg cctcaagtat
     4801 tgccggatcg cctgcacagt cgcattgtta gctccatggt agacgagccg agtttcttgt
     4861 cgggcaagct gctgctggcg atgccgggaa tggcggatcc gcgttttgag cgcgccgtga
     4921 ttgcgatgtg cgttcacgac gaaaatggcg caattggtgt tggcattggt cataagcgcg
     4981 ccggaatcac gtttcggggt ttgctgcgcc agcttgatat cgatccagcc gaggcgccgg
     5041 attgtgcggt tcatcatggc ggcccggttg aaccgggaag gggcttcgtt ctccattcga
     5101 ccgactgggg cggtcaggat acgcttcatg tcgtcagtgg cgctggcaag atcttcgcaa
     5161 tgaccggaac catcgacgtc ctgcgtgcga tcgctgaaag gcggggaccc aagcactgga
     5221 ttgttgcgct tggctacgcg gggtggggtg agggccagct cgatgaagaa atgactcgcc
     5281 atggctggtt cgccgcacaa gccgacgagg gcatcctgtt cgacacgccg accgatgaac
     5341 gctggggagc ggcattcaag gcggagggca tcgatccacg gctccttgcc tcggaaacgg
     5401 gcgcggcctg acggaaaaca atcctcgttc cggcgttcgc accgaaatgc ctctagctaa
     5461 acccaattca gcgccgcctt cacccatggc caagttcttc gaaacctggc gcggatggtt
     5521 gctggccgcg cttcttgttg gcggaataat cgtcgcagtt gttcactggg gcgacgtcaa
     5581 gcagtttgca aagctcctga ccgaagccaa gccgctgtgg ctgctcgtcg ctactatctt
     5641 acagctcgga acgtatttcg gactggccgc gcaatggtgg gtggttctcc gacgcggccg
     5701 ctcgcccgag ggcgttggcg acctgcttcg actgacgttc gccaagcatt tcgccgacca
     5761 ggttgttccg accgccggcg taagtggcaa tgtgttgctg gtcgaccgcc tcgttactct
     5821 cggcgttccg aggagcaacg ccgttgcggc gctccttctg caagtcattg cctattacct
     5881 gtcctatgcg ctcggcgctc tttgggtcct ggtggtactc tggtggaaaa gccggatgag
     5941 cttcctcctg tccggagccg tcatcatctt tcttgtcgtt gcctgcggaa taccggcact
     6001 gaccttgtgg cttcaccggc gtggccagga acgcattccg cgctggattg cgcgctggtc
     6061 gaaagcaaag cacttcttcg agttgatcgg ggaggcgcca agggaacttg ttcgcgaccc
     6121 gtggctcatc gggtgcatta cgctgctcaa tctcgcggtg ttcattgccg atgccgcgac
     6181 gatgcagacc tgcctaattg cgcttggcgt tcatgcgccc ctcagcgctg gctatgtcgc
     6241 tttcatgatc gcatcgatcg ccgtgattct gggcccgatc ccgatgggcc taggctcgtt
     6301 cgaagcggtc agcattgcca tgctgcgcct gttcggagtg ccgttcgaag cagcgctatc
     6361 agcgacgctt ctgtttcgcg gattcacgct gtggctgccc ctcatccccg gcggaattct
     6421 ccttcgcgag gagatgaagc cggcggaagc ctgagcgcgc gacgtcaggc gtagccgagc
     6481 agttccctta agcccggcgc aacgaggtcg accatcttct tctgaagctc tggcaaatgc
     6541 ggtggaaact cgacatcgac gcccgtgagg ttctcccgag cggtcccgct ttgctttcgg
     6601 tccgagccaa tgcggacgcg ctcgcgccag tcagcaggct tttcgatgcc tgcggcgctg
     6661 aacaaatttg aaaagaattc atcggcagag tccgtgtcga ggttcttcac cgcatcaacg
     6721 agatcctcgt agcgcaggag ataggcgccg gtcccgagcc aggcgagtgc attgtagaca
     6781 tacattgagg caagcggcgg tgttttgtcg tgaacgccga atatcatcat gttgagtaag
     6841 gcgtcgaccg agagcgagcc ttctttcaaa atctcgaagc ctccgaactc atcgctaaga
     6901 aagaagcgtg cgcgggcgat gacccaatca tagggatcgc gcaccaagac tatctgacgc
     6961 actcggcctg ctgcgacggc ggacacgtcg tttaacatga ggtggcccca ggacagcaag
     7021 tttcgcggat ccgagaatgc actgaaatgg cgttcgagga tctgcgcctg gatgaattgg
     7081 actgtgtagt gctgatc
//
LOCUS       DASRBJ010000089         2630 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_673772,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000089 DASRBJ010000000
VERSION     DASRBJ010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2630
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_673772"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1447
                     /locus_tag="VE968_02580"
     CDS             <1..1447
                     /locus_tag="VE968_02580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="AcrB/AcrD/AcrF family protein"
                     /protein_id="HZU50742.1"
                     /translation="IAPMLPYLLLLFSLALVARRLLGALGYVLAFCAIFFAGSTNGMF
                     TPERIDHHGWQLALLALSMAGIADPKKLRGGLVLGISTALSLAIGLEMIIYLALAGVA
                     MVLFWVEDAREGDRLSAYAISLGGSTAFCFLVFASNDNWNAVCDALSPVWLSDALLAS
                     ALMLILAWIPAATWQRRLLLAVGAGLIISSFHALTWPQCLQRLEGISPEAERLWLSHV
                     KEARPVWMHGWRIATLILVLPVTGAIGWLLLAWSRWNEPGLRRRVIGSAMPGIAASLL
                     LFWQTRTGPAAQMMAAVGAAAIIWLLWPRAWNSRNPILRVVGAVVVFIAGVGAIVPLV
                     VDFIPEAPATKRDQEIGKANRLCASLWGLHPVALQPRGVVMTFVDLGPRLITLTHHDA
                     IAGPYHRNWKQIVDVMNFWRGSADQAHRLAEKYHVNYVLSCPNSSTTTIFMSETPGGF
                     YAQLQRNEVPDWLNPVSLPKDSPYRMWRVVG"
     gene            complement(1444..2076)
                     /locus_tag="VE968_02585"
     CDS             complement(1444..2076)
                     /locus_tag="VE968_02585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HZU50743.1"
                     /translation="MIELFGSALVTFLVIIDPPGCAPIFASLTRGSTAAHRRAMAIRS
                     SLIAWAILMFFALLGRPLLQALGISLASFRIAGGIMLFFIAMDMVFERRTQRREERAH
                     SIEGTPDAEDISVFPMAMPMITGPGSIASAMLWVSRAETFVHVVIVLAAITTVMLITM
                     ITLLAAGPLMRLIGDKVEAAITRLLGVILAALAAQFVVDGLRESFPHVLG"
     gene            complement(2073..>2630)
                     /locus_tag="VE968_02590"
     CDS             complement(2073..>2630)
                     /locus_tag="VE968_02590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50744.1"
                     /translation="LGQWTAFRKWAADDAVMFTPKPVWAKTFLKALKDPPRSISWRAE
                     QTFSSCDGRTAVNIGPWFNQDHQLAGYFTTVWQRTTAAGWRWVYDGGVPIRKNSHQNV
                     EKSQRASCNVPDQRLPMRISAALDRTASMTSAQNSGRGYSADKTLGWEWKVGLGGERT
                     LRVYLWTGNRYDEVIHAIDPAREPR"
BASE COUNT          487 a          820 c          765 g          558 t
ORIGIN      
        1 aatcgccccg atgctgccct atctgctctt gctcttctcg ctagcgctcg tggcgcggcg
       61 ccttcttggc gcactcggct atgttctggc gttttgcgca atattcttcg cggggtcgac
      121 gaacggcatg ttcacgccgg agcgtatcga ccaccacggc tggcagctcg cgctgcttgc
      181 gctcagcatg gcaggaattg cggatccaaa gaagctgcgc ggcggcttgg tgcttggcat
      241 ttcgacggct ctgtcgctcg cgattggcct ggagatgatc atctacctcg cgcttgccgg
      301 cgtggcgatg gtcctcttct gggtcgaaga tgcacgggaa ggcgaccgac tgtccgccta
      361 tgcaatctcc ctcggcggca gcacggcatt ttgcttcctc gtctttgcgt ccaacgacaa
      421 ttggaatgcc gtttgcgatg cactttcacc ggtgtggctc tctgatgccc ttctcgcgag
      481 cgccctcatg ttgatccttg cgtggatccc ggccgcaact tggcagcgac ggcttcttct
      541 tgctgtcggt gccggactca tcatttcaag tttccatgca ctcacctggc cacaatgcct
      601 tcaacgtctc gagggtatat cgcccgaggc cgagcgactg tggctcagcc acgtcaagga
      661 agcgcggccc gtctggatgc acggttggcg gatcgcgaca ctaattctcg ttcttccggt
      721 gaccggcgca atcggctggc ttctccttgc ctggtctcga tggaacgagc ccggtcttcg
      781 ccggcgcgtc attggcagcg caatgcccgg aatagcagcc tctctgcttc tcttctggca
      841 aacgcgcacc ggtccggcgg cgcaaatgat ggcggccgtc ggtgcagcgg cgataatctg
      901 gcttctctgg ccgagagcct ggaacagccg caacccgatc ctccgggtcg tcggggccgt
      961 tgtcgttttc atcgccggtg tcggcgcgat cgttccactc gttgttgact tcattccgga
     1021 ggcgcccgca accaagcgcg accaggagat cggcaaagca aatcgtctgt gcgcgtcgct
     1081 ctggggcctt catccggtcg cgttacagcc gcgcggcgtc gtaatgacat ttgtcgactt
     1141 gggcccccgg ctgatcacgc tcacgcacca tgacgcaatt gccggcccct atcaccgcaa
     1201 ctggaagcag atagtcgatg tcatgaattt ttggcgcggt tcggcagacc aggctcatcg
     1261 tctcgcagag aagtatcacg taaactacgt gttgagctgt ccgaacagct cgacgaccac
     1321 catcttcatg tccgagacgc caggcggctt ctatgctcag ctccagcgca acgaagtccc
     1381 agattggctc aatcccgtca gccttcccaa ggactcgcct tatcgcatgt ggcgggtagt
     1441 cggttaacca aggacgtgcg ggaagctctc ccttagccca tcgacgacaa attgcgcggc
     1501 gagcgcagcc aatatcacgc cgagaagtcg cgtgatcgcc gcctcaacct tgtcgcctat
     1561 aagccgcatg agcggacctg cggccaacag agtgatcatt gtgatcagca tgaccgtcgt
     1621 gattgcggca agaacaatga cgacatggac gaatgtctct gcgcgcgaca cccaaagcat
     1681 tgcgctagcg attgagcctg gaccagtgat cattggcatc gccattggaa atacactgat
     1741 atcttcggcg tccggggtgc cctcgatcga atgcgcgcgc tcttcccgac gctgggtccg
     1801 ccgctcgaac accatgtcca tggcgatgaa gaacagcatg attccgccgg caattcggaa
     1861 gcttgcaaga ctaattccga gcgcctgaag taagggacgt ccaagaagag cgaagaacat
     1921 caggatcgcc caagcgatca acgatgaccg gatcgccatt gcgcgccgat gtgcggccgt
     1981 cgaaccgcgc gtcaaacttg cgaatatggg tgcgcaacca ggtgggtcga tgatcaccag
     2041 gaaggtgacg agcgccgagc cgaacagctc gatcatcgag gctcgcgggc cgggtcgatc
     2101 gcgtgaatga cctcgtcgta gcggttgccg gtccagagat aaacccggag cgtcctctcg
     2161 ccgcccagcc caaccttcca ctcccaaccg agcgtcttgt cagccgaata cccgcggccg
     2221 ctgttctgcg cgctggtcat cgaggccgtc ctgtcgagcg ccgccgaaat gcgcattggc
     2281 aaccgctggt ccggaacgtt gcagcttgcc cgttgggact tctcgacatt ctggtgcgag
     2341 ttcttcctga tgggaacgcc gccatcatag acccaacgcc agcccgctgc cgtcgttcgc
     2401 tgccagacag ttgtgaaata gccggcaagc tgatgatctt gattgaacca aggaccgatg
     2461 ttcactgcag ttcgaccgtc gcacgagctg aatgtctgtt ccgcgcgcca gctgatcgat
     2521 ctgggtggat ccttgagtgc cttgaggaac gttttggccc agaccggctt gggggtgaac
     2581 atgaccgcgt cgtcggctgc ccatttgcga aaggcagtcc attgccccaa
//
LOCUS       DASRBJ010000090         2140 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_466688,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000090 DASRBJ010000000
VERSION     DASRBJ010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_466688"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..459
                     /locus_tag="VE968_02595"
     CDS             <1..459
                     /locus_tag="VE968_02595"
                     /inference="COORDINATES: protein motif:HMM:NF020918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phasin family protein"
                     /protein_id="HZU50745.1"
                     /translation="VTKNFFNGFDGAPAFAPFQTLYSEANERSQELVKRSQKVAEELA
                     DLARANVEAVVEAGRVAAEGARSIGQDAVSSSRDSFEQAADAIRSLAEAKSPTEYLQL
                     QSDFARASFDRAVAESSRLTESLVKLAGEAFQPLSNRASANAERFNTLVA"
     gene            614..943
                     /gene="clpS"
                     /locus_tag="VE968_02600"
     CDS             614..943
                     /gene="clpS"
                     /locus_tag="VE968_02600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HZU50746.1"
                     /translation="MANGPNDDGLDDIETGVATRTRPKTKKPSNYKVLMLNDDYTPME
                     FVVLVLQRFFSMGIEDATRVMLQVHQQGVAVCGVYTYEVAETKVTQVIDFARENQHPL
                     QCTLEKA"
     gene            982..>2140
                     /gene="murA"
                     /locus_tag="VE968_02605"
     CDS             982..>2140
                     /gene="murA"
                     /locus_tag="VE968_02605"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HZU50747.1"
                     /translation="MDSIWIKGGDRLEGEIPISGAKNAALTLMPCALLTEEKLTLANL
                     PRLADVDTFSHLLNQLGVSTHVAGVRKGDVGRRMTLQASDIASTVAPYDMVRKMRASV
                     LVLGPMLARAGEATVSLPGGCAIGDRPIDLHLRALECMGARIELAAGYVKASAPTGRL
                     SGGDFSFPVVSVGATENALMASVLASGRTQLFNAAREPEIVDLCNLLVAMGARIHGVG
                     SSHLIIDGVEALHGCEYQVMPDRIEAGSYACAAAITGGSLDLIGARADDMQATLHALA
                     QGGLMIEFHDRGIKVSADGELKPLALSTAPFPGFATDMQAQFMAMLALARGDSFLEET
                     IFENRYMHVPELRRMGANVDIHGRSAIVHGVERLTGATVMATDLRASMSLIL"
BASE COUNT          406 a          666 c          650 g          418 t
ORIGIN      
        1 gtgaccaaga attttttcaa tggctttgac ggcgctccgg cgttcgctcc attccaaacg
       61 ctttacagcg aagcaaacga gcggagccaa gagctcgtta agcgcagcca gaaggttgcc
      121 gaggaacttg ccgatctcgc acgtgccaat gtcgaggcag tcgtcgaggc tggccgcgtt
      181 gccgccgagg gcgctcgctc gatcggccag gacgcggtga gctcgagccg tgacagcttc
      241 gaacaggcag cggacgcgat tcgttcgctt gccgaagcca agtcgccgac cgagtatctc
      301 cagctccaga gcgatttcgc tcgtgcctcg ttcgaccgcg ctgtcgccga gagctcgcgt
      361 ctcaccgagt cgctcgtgaa gctcgctggc gaggcgttcc agccgctttc gaaccgcgct
      421 tcggcgaatg ccgagcgttt caacactctc gttgcctgac cctctcccct cctaagtcag
      481 ggcaacgact gttggcggtc gctccactac ggggcggccg cctttttttt acggttatga
      541 tgcaaactgc cgccttgccg cgtttttgcg ggctgccata tcttagcctg acatgatttc
      601 taaactgacc agaatggcga acggacccaa tgacgacgga ctcgacgaca tcgagacggg
      661 cgtcgcgacg cgtacccggc caaagaccaa gaagccgtcc aactacaagg tgctgatgct
      721 caacgacgat tacacgccga tggagttcgt cgtgctcgtc cttcagaggt ttttcagcat
      781 ggggatcgag gacgcgacgc gagtcatgct ccaggtccac cagcaaggcg tcgccgtctg
      841 cggcgtctat acgtacgagg ttgctgaaac aaaggtcacg caggtgatcg acttcgcgcg
      901 cgaaaaccag cacccgctcc aatgcacgct ggagaaagcc tgagcgttgc agccgcgccg
      961 cgctccgcta aagccgatct cgtggacagt atctggataa aaggcggcga tcgcctcgaa
     1021 ggcgagattc cgatcagcgg cgccaaaaac gcggcgctga cactcatgcc gtgcgcgctc
     1081 ctcaccgagg aaaagctgac ccttgccaat ctgccgcggc tcgccgacgt cgacacgttc
     1141 agtcacctcc tgaaccagct tggcgtttcg acgcatgtcg ctggtgtgag gaagggcgac
     1201 gtcggacggc gaatgacgct ccaggcgagc gacattgcct cgacggtcgc gccgtacgac
     1261 atggtgcgca agatgcgggc ctcggtgctc gtgcttggtc cgatgcttgc acgagccggc
     1321 gaagcgacgg tttcgcttcc gggcggatgc gcgatcggcg atcgtccgat tgatctccac
     1381 ctaagagcgc tcgaatgcat gggtgcgcgc atcgagctag ccgcgggcta tgtgaaggcg
     1441 agcgccccga ccggccggct ttcgggcgga gacttcagct tcccggttgt gtcggtcggc
     1501 gccaccgaga acgcgctcat ggcttccgtt ctcgccagcg gccgtaccca gcttttcaat
     1561 gccgcgcgcg aacccgagat cgtcgacctt tgcaatctcc tcgttgcaat gggtgcgcgc
     1621 attcacggcg ttggttcgtc gcacctcatt atcgatggag tcgaggcgct ccacggctgt
     1681 gaatatcaag tgatgcccga ccggatcgag gccgggagct acgcctgcgc ggccgcgatc
     1741 accggcggat cgctcgatct catcggcgcg cgcgctgatg acatgcaggc aacgcttcat
     1801 gcactcgccc aaggcggact catgatcgag ttccacgatc gcggcatcaa ggtcagcgcc
     1861 gacggtgaac tgaagcccct cgcactttca acggcgccgt ttccaggatt tgcaaccgac
     1921 atgcaggcgc agttcatggc gatgcttgcg cttgcgcgtg gggacagctt tctcgaggag
     1981 acgatttttg agaaccgcta catgcatgtt cccgagcttc gccgaatggg agccaacgtc
     2041 gacatccatg gccgttcggc aatagttcac ggtgtcgaac ggttgacggg tgcaacggtc
     2101 atggcaaccg accttcgagc atcgatgagt ctcatccttg
//
LOCUS       DASRBJ010000091         3400 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_568814,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000091 DASRBJ010000000
VERSION     DASRBJ010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3400
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_568814"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..794)
                     /locus_tag="VE968_02610"
     CDS             complement(<1..794)
                     /locus_tag="VE968_02610"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HZU50748.1"
                     /translation="MSSSLARFVRLLMMALILATSAGQAFAQQQDSGPSILRDSETEL
                     LFKDVARPLIKGAGLDENSVQIVLLNDPEINAFVDQGQIVYIQSGLIEAADNVNQLQG
                     VIAHELGHVVGGHSIRLQQGAKTATGISLATLVLGALAIAAGAGDAAMGLMMAGQQAA
                     MGSFLAFTRTQEATADASAVRTLHAAGISGKGMLDFFAKLQNQEYRLAIYAKDSYDST
                     HPLSSERIQALEQNFKSDPAWNTPMDPALQARFLRVKAKLLGFIDP"
     gene            complement(854..3352)
                     /locus_tag="VE968_02615"
     CDS             complement(854..3352)
                     /locus_tag="VE968_02615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HZU50749.1"
                     /translation="MSMRMLIDARHPEETRVAVVKGNRIEEFDFESAEHKQLKGNIYL
                     AKVTRVEPSLQAAFVDYGGNRHGFLAFSEIHPDYYQIPKADREALLREEAEHAAEEER
                     LRAAEYERDDHDDDLDDPFDDETNETDVGNDPEAATEEAGTGSNRSPVDESAADELRK
                     KRQALRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGG
                     GISRKISNGADRKRLKSIMADLKLPSTMGLIVRTAGLSRTKTEIKRDFDYLARLWDEI
                     RERTLSSTAPALIYRDSDLIKRAIRDLYHREIEEVIVEGEEGYKAAKGFMKLLMPSHV
                     RRVKLHSETTPLFQRCGVEDQLSAMYQPIVQLKSGGYLVINPTEALVSIDINSGRSTR
                     EHNIEQTAYNTNLEAAQEIARQLRLRDMAGLIVIDFIDMEQSSHVRKVEKAMKEALKN
                     DRARIQVGRISTFGLMEMSRQRLRTGVLEASTKPCPHCEGTGLMRTAASAGLSALRIL
                     EDEAARGRGERICLRAGREAAIYVLNKKRAELGEIEQRYGVMIEVLVDESFEGARMTV
                     DSSGPRPVAAPKPQIGQSFEEEEDEELETEPLETDEDDADVANMGEQQQEGDRQGRRR
                     RRRRRGGRGRRRDGGEPIEAGELATSEQLEEEPAVEQAQAAPLEAPAEGSREGGRRRR
                     RRGRSGANNPPADAVIEPQGSPMVERPIDEERPIAEVAPLDEPQPPAPKRRRRAKAAS
                     SENLPPVSEPAPAEAPPGETADAASVEAAPKPTRKRRTRKAETQESASPAEAPADAGS
                     SAAPEPLPVPPANTNTADETTSEPRRGWWQRTFG"
BASE COUNT          542 a         1058 c         1057 g          743 t
ORIGIN      
        1 ttgggatcga taaagccgag gagcttagcc ttgaccctca ggaaccgggc ttggagcgcc
       61 gggtccattg gtgtgttcca ggcggggtca ctcttgaaat tctgctcaag cgcctggatc
      121 cgctccgagg atagcgggtg agtgctgtcg tagctgtcct ttgcgtagat cgcgaggcgg
      181 tactcctggt tctgcagttt cgcgaagaaa tcgagcatgc ccttgccgct gattccagcg
      241 gcatggaggg tccttacggc ggacgcgtcc gcggtcgctt cctgggtgcg cgtgaatgcg
      301 aggaacgatc ccatcgccgc ctgttggccg gccatcatga gtcccatggc ggcatccccg
      361 gcaccggcgg caatagcaag cgcaccaagg acaagcgttg caaggctgat gcccgttgcc
      421 gttttggcac cctgttgaag gcggatcgag tggccgccaa caacatggcc gagctcgtgc
      481 gcaatgacgc cctgaagctg gttcacattg tccgcggctt cgatcaggcc tgactgaatg
      541 tacacaatct gcccctgatc gacgaatgcg ttgatctcag gatcgttgag aagaacgatc
      601 tgaacgctgt tttcgtcgag ccccgctccc ttgatcaggg gacgcgctac gtccttgaag
      661 agcagttccg tctcgctgtc gcgcaggatc gagggtcccg aatcctgctg ctgcgcgaat
      721 gcctggccgg cacttgtagc caggatcaac gccatcatca gcaggcgcac gaagcgggca
      781 agcgacgagc tcatcgcccg accgcttacc acgagcagcc cttaacgcgg catgaaaacc
      841 gcattttgga tcactagccg aacgtccgct gccaccaacc acgacgcggc tcggaagtcg
      901 tctcgtccgc cgtgttggta ttcgctggcg gaaccggcaa aggttccgga gcagccgagg
      961 atccagcgtc tgctggagct tcggctggcg atgcggattc ttgcgtttcc gcctttcttg
     1021 tgcggcgctt gcgcgtcggc ttcggagccg cctctacgga agccgcatcg gccgtctcgc
     1081 ccggaggggc ttccgcgggt gctggttcgc taactggtgg cagattctcg ctcgaagcgg
     1141 ccttggcccg gcgacgccgc ttcggtgcgg gcggctgagg ctcatcgaga ggcgcgacct
     1201 cggcgatcgg ccgctcttcg tcgatcggtc gttcgaccat gggagagcct tgcggctcga
     1261 ttacggcgtc cgccggtggg ttgtttgcgc cactgcgtcc gcgacggcgg cgtcgacgac
     1321 caccctcgcg cgagccttct gcgggagctt ccaacggcgc cgcttgagct tgctcgactg
     1381 cgggttcctc ctcgagctgc tcactagtag caagctcgcc cgcttcgatt ggctctccgc
     1441 cgtcgcgccg gcgaccacga ccgccgcgtc ggcgacgccg ccgtcggcgg ccctgtcgat
     1501 cgccttcctg ctgctgctca cccatgttgg cgacatcggc atcatcttcg tcggtctcga
     1561 ggggctcggt ctcgagctct tcgtcctctt cctcttcgaa cgactggccg atctgaggct
     1621 tgggcgcggc gacgggccgc gggcccgaac tgtccacggt catccgggcg ccttcgaagc
     1681 tttcatcgac aagcacttcg atcatgacgc cgtagcgctg ctcgatttcg cccagttccg
     1741 cgcgcttctt gttaagaacg tagatcgctg cttcgcggcc agcacgcagg caaatgcgct
     1801 cgcctctacc ccgtgctgcc tcgtcttcga ggatacggag cgcagagagc ccggctgaag
     1861 cggcggtccg cataagaccg gtgccttcgc agtgcgggca cggcttcgtt gaggcttcga
     1921 gaaccccggt gcgcaagcgt tgacggctca tttccatgag cccgaacgtg gaaatccggc
     1981 ccacctggat gcgcgcgcga tcgttcttca gcgcctcctt catcgccttc tcgaccttac
     2041 ggacgtggct cgactgttcc atgtcgatga agtcgatcac gatcagcccc gccatgtccc
     2101 tgagccgcag ctggcgcgca atttcttggg cggcttcaag gttggtgttg tatgccgtct
     2161 gttcgatatt gtgttcgcga gtggagcggc ccgagttgat gtcgatagac accaaggctt
     2221 ccgtcgggtt gatgaccagg tacccacccg atttcagctg cacgatcggc tgatacatgg
     2281 ccgagagctg gtcctcgacc ccgcaacgct ggaacaaggg tgtggtctcg ctgtgaagct
     2341 tcacgcggcg gacgtggctc ggcatgagca gcttcatgaa gcccttggcg gccttgtagc
     2401 cttcctcgcc ctcgacgatc acttcttcga tctcgcggtg gtagaggtcg cggatggcgc
     2461 gcttgatgag gtcactatcc cgatagatga gcgccggggc agtgcttgaa agcgtccgct
     2521 ctcgaatctc gtcccacaag cgagcgagat aatcgaagtc tcgttttatc tccgttttcg
     2581 tccgcgacag ccccgctgtt cgaacgatca gccccatggt cgatgggagc ttcaaatccg
     2641 ccatgatcga cttgaggcgc ttgcgatcgg caccgttcga gatcttgcgt gaaatgccac
     2701 cgccatggct cgtgttcggc atcagtacgc aatagcgacc ggcaaggctg aggtaggtcg
     2761 tgagtgctgc gcccttgttc ccgcgctcct ccttgacgac ctgcacaagc agcacctgtc
     2821 gccgctggat gacgtcctgg atcttgtagc gacggcgaag tgcctgccgc ttcttgcgca
     2881 gttcgtcggc ggcggactcg tcgacgggtg agcgattaga gcccgttcct gcttcttcgg
     2941 ttgctgcctc ggggtcattg ccaacgtccg tttcgttggt ttcatcgtcg aatgggtcgt
     3001 cgagatcatc gtcgtgatcg tcgcgctcat attccgcggc gcgaagtctc tcctcttcgg
     3061 cagcgtgctc ggcttcctcg cggaggagcg cttcccggtc ggctttcggg atctggtaat
     3121 agtctggatg gatttcgctg aaggcgagga aaccgtggcg attgccgcca taatcgacga
     3181 aggcggcctg aagcgacggt tcgacacgcg tcactttggc aagatagatg tttcccttga
     3241 gctgcttgtg ctctgcggac tcgaagtcaa actcttcgat ccggtttcct ttgacgaccg
     3301 cgacccgggt ctcttccggg tggcgcgcat cgatcagcat gcgcattgac attgaatttt
     3361 ctccaggcgc gcggaggcag cgaatgagcg ctgcggcgcg
//
LOCUS       DASRBJ010000092         4632 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_415263,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000092 DASRBJ010000000
VERSION     DASRBJ010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4632
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415263"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..587)
                     /locus_tag="VE968_02620"
     CDS             complement(<1..587)
                     /locus_tag="VE968_02620"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HZU50750.1"
                     /translation="MSNAVAEIIAPGVYLRSCLAPFDELLARSDITDIYVNRPGELWI
                     ETLGGKIERIDDVAISEAVLARLARQVAALTHQGVSREHPLLAATMPDGSRIQVVAPP
                     ATRGPLALAIRRQVTAAMTLRDYEAAGQFDATRATARRDNIDAKLERLVADRRFADAL
                     ALAVRARKNIIVSGGTSTGKTTFLNALLREIPSDER"
     gene            complement(584..1732)
                     /locus_tag="VE968_02625"
     CDS             complement(584..1732)
                     /locus_tag="VE968_02625"
                     /inference="COORDINATES: protein motif:HMM:NF015688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbI/VirB10 family protein"
                     /protein_id="HZU50751.1"
                     /translation="MPVKEIGDPRLQALFGTTDPRDVSARPVVRLRGTGVPPIAIAFG
                     ALVLAVLLFLVLNGRRTQQQAPSTRAEASDNSGSAWAVPPPLYVPPAPGPVAVPQALE
                     EQRPAPSALPMPQPAPEQRTLVASPPVVQSVPQLAPAPAPAPTSIPPQHVSAGSPLVI
                     DTGTAEANPAAAGLSRGAISESSGTSTHGIVRMRASAFANRAMTVPQGYLIPAVLETG
                     FDSTKPGFARAIVSRDVRGFDGTTVLIPRGSRLVGEYKSAAGQGQNRAIINWTRLIRP
                     DGMTIAMDAPAVDTVGRGGVAASVNSHFFARLGDALLQSTFAIGQALAGRAVAGPVVV
                     VAGNSAIPTPQVTAQQSNYVPTLKVPPGKSISVFVAQDLDFSAPSTGK"
     gene            complement(1732..2448)
                     /locus_tag="VE968_02630"
     CDS             complement(1732..2448)
                     /locus_tag="VE968_02630"
                     /inference="COORDINATES: protein motif:HMM:NF015487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbG/VirB9 family P-type conjugative transfer
                     protein"
                     /protein_id="HZU50752.1"
                     /translation="MRRSIPFAILLLVTAPASAQIMPHPGNGDPHLQVVDYSDGRVFL
                     LRGVPGYQMMVELSPDEQIENVALGDSSAWSVAANKDGDRLFLKAREPGTVTNMTVVT
                     SVRTYTFDLMAQNGPSADTPYTVQFRYPAPARMGRDPQFVDVGAISRRISHYRVSGDR
                     ALRPSAMTDDGEHTYISWPRGAAIPAIYTPDKSGNEILLNGMMGTDDVYVVDGVPQKL
                     IFRIDRSVARADRMNPRKGR"
     gene            complement(2445..3239)
                     /locus_tag="VE968_02635"
     CDS             complement(2445..3239)
                     /locus_tag="VE968_02635"
                     /inference="COORDINATES: protein motif:HMM:NF016238.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VirB8/TrbF family protein"
                     /protein_id="HZU50753.1"
                     /translation="MNKHSRETLDTYYAEAASWNRDRVQSMRSSHRIAWVIAAAAGLL
                     AVVEAIALVLLMPLKTVEPYTLMVDKTTGYVQALRPLDEQKIAPDAALTQSYLVQYVI
                     GREGFDIGTLNATYRKIALLSADSARTTYLASMQVSNPESPLVRYPRTTVIEVRVKSV
                     SPIGANTELVRFDTNQTDGNGEAQPPKPWVAVVRYRYSTAPMSVEDRFVNPLGFQVIS
                     YRKDPEAVPAASAGATSDRQADVQSLDVNQPYYRPFPNAPPAAVRQ"
     gene            complement(3236..4444)
                     /locus_tag="VE968_02640"
     CDS             complement(3236..4444)
                     /locus_tag="VE968_02640"
                     /inference="COORDINATES: protein motif:HMM:NF016491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HZU50754.1"
                     /translation="MIDACSVGHQGGGFIGSMTGYIDCQAQSLGTGAWTALSAPGSSL
                     MMVLSAFLTIFIALIGYNLLLGSSFTLRGATLAFVKIGAVFALATSWPAYETIVYDLV
                     TDGPGQLVSEIGTRVPVAGSDGTLVERLDLADGALVRLAILGPGNAPANAYRDVPPPP
                     FIGFDSFALGGSRVLFLISSIAALSIVRVIAGLLLGLGPFFIAFLLFDNTRSLFEGWV
                     RVLAGTGLAAVAAAIVLGLELGVVEPWVGNVLARRGAGEALPSMPTELFVITCLFSLM
                     LACSLYACFRLSAAFRLANFMRMERGGTGTQHDRPSPLRISSTRSTEAQIERSRASAI
                     ASVFSTASAREASPSMILISSTSSQYRAPGARTGAQPGERVVVPLGRSFSRKPGVRVS
                     ALATRRDGAQ"
     gene            complement(4441..>4632)
                     /locus_tag="VE968_02645"
     CDS             complement(4441..>4632)
                     /locus_tag="VE968_02645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50755.1"
                     /translation="DSAHCFLIKHGNDSVVARLNLAGEKDILTILSGRERTVRLLDEI
                     RLETGDDPEAWLPRLLEVA"
BASE COUNT          926 a         1405 c         1462 g          839 t
ORIGIN      
        1 cgctcgtcgc tcggaatctc acgcaagagg gcgttgagga acgtcgtctt acccgtcgat
       61 gtgccacccg agacaatgat gttcttgcgc gcgcgaacgg caagagcgag agcgtctgca
      121 aatcggcgat cagccacgag ccgttcgagc tttgcgtcaa tattgtcgcg ccgtgccgtg
      181 gcgcgcgtag cgtcaaattg ccctgcagcc tcataatcgc gcaaagtcat tgctgccgtg
      241 acctggcggc ggattgcaag cgccagcgga ccccgtgtcg ctggtggcgc aacgacctga
      301 atgcgcgatc cgtcgggcat cgttgccgca agcagtggat gctcacggct gacgccctgg
      361 tgcgtcagcg cggccacctg gcgcgcaagg cgcgcaagaa cggcttcact gatggcgacg
      421 tcgtcgatcc gctcgatctt gccacccaag gtctcgatcc agagttcgcc cggtcggttg
      481 acgtagatgt ccgtgatgtc cgatcgcgca agcagttcat cgaacggcgc gaggcaagat
      541 cgaagataaa cacctggcgc aatgatttcg gcgacggcgt tgctcacttt cctgtgctcg
      601 gtgcgctgaa gtcgagatcc tgtgcgacga agacgctgat gctctttccg ggtggaacct
      661 tgagggttgg tacataattt gattgctggg cggtgacctg cggcgttgga atagcggaat
      721 tgccagcaac gacgacgacc ggccccgcca cggcgcggcc cgcgagtgcc tgaccaatcg
      781 cgaatgtcga ttgcaacagg gcgtcgccaa gccgtgcgaa gaagtgcgag ttgaccgacg
      841 ctgcaacacc gccccggccg acggtgtcga cggccggcgc atccatcgcg atcgtcatcc
      901 catccggacg gatcaggcgc gtccagttga tgattgcgcg gttctgtcct tgccccgccg
      961 cggacttata ttcgccgacg agccggctcc cgcgtgggat gaggaccgtg gtgccatcga
     1021 agccgcgtac gtcgcgggac acgatcgcac gcgcgaagcc cggcttcgtt gaatcaaacc
     1081 ccgtctcgag cactgccgga atgagatagc cttgcggaac ggtcatcgcg cggttcgcaa
     1141 aggcactggc acgcattcgg acgatcccat gcgtcgaggt tcccgaagac tcgctgatcg
     1201 caccacgcga caatccagct gctgcaggat tggcctcggc agtgcccgtg tcgatcacca
     1261 gcggcgaacc cgcggagaca tgttgcggtg gaatgctggt cggcgctggg gcaggggcgg
     1321 gcgccaattg ggggacgctc tgcaccaccg gtggcgaagc aacgagagtg cgttgctctg
     1381 gcgccggctg tggcattggc aaggctgaag gggcagggcg ctgctcttca agtgcctggg
     1441 ggacagcaac aggccccggc gctggtggta cgtaaagcgg cggcggcacg gcccaggcgg
     1501 agccgctatt gtccgatgct tcagcgcggg tacttggtgc ttgttgctgc gtccttcttc
     1561 cattcagaac caggaacagc aggacggcaa gcacaagagc accaaacgcg atcgcgattg
     1621 gcggaacacc ggtcccgcgc agacgcacca ccgggcgagc gctgacgtcg cggggatccg
     1681 tcgttccgaa cagggcctgg agccgtgggt cgccgatttc cttgacaggc atcagcggcc
     1741 cttcctcggg ttcatgcgat cagcgcgcgc gacgctacgg tcgatacgga agatgagctt
     1801 ctgcggtacg ccgtcaacaa catagacgtc gtcggttccc atcattccgt ttagaagtat
     1861 ttcattgccg gatttgtcgg gcgtgtagat cgcggggatc gcggctccac gaggccagct
     1921 gatataagta tgctcgccat catcagtcat cgcggacggc cgcagggctc gatcgccact
     1981 gacgcgatag tggctgatgc gccgcgaaat ggcgccgacg tcgacgaatt gcggatcgcg
     2041 ccccatgcgc gcaggcgccg ggtagcggaa ttgcaccgtg tacggtgtat ccgcggaggg
     2101 accattttgc gccataagat cgaacgtgta ggtcctgacc gacgtcacca cggtcatgtt
     2161 cgtaaccgtg cccggttcgc gcgccttgag gaacagccgg tcgccatcct tgttcgcggc
     2221 gaccgaccag gcgctgctgt cgccgagcgc aacattctca atctgctcgt cgggggagag
     2281 ctcgaccatc atttgatagc ccgggacacc gcgcagcagg aacacgcgac cgtcgctata
     2341 gtcgacgact tgcaagtgcg ggtcgccgtt tccagggtgc ggcatgatct gcgcggacgc
     2401 tggtgccgtc accagcagaa ggatggcaaa tgggatggag cgcctcattg gcgtaccgcc
     2461 gcaggaggtg cgttcgggaa aggccgataa tagggctggt tcacatccag gctttgcaca
     2521 tccgcctgtc ggtcacttgt ggcgcctgct gaggctgcgg ggaccgcctc agggtctttg
     2581 cgataggata tgacctggaa ccctagcgga ttcacgaagc gatcttcgac cgacatcggt
     2641 gccgtcgaat agcgatagcg tacaacggcg acccacggct ttggcggttg cgcttcgcca
     2701 ttgccgtcgg tttgattggt gtcgaagcga accagctcgg tattcgcgcc aatcggcgag
     2761 acgcttttca cgcgtacttc aatcacggtt gttcgcgggt aacggacgag cgggctctcg
     2821 ggattggaga cttgcatcga ggcaagatag gtcgtgcgcg ctgagtccgc cgacagcagc
     2881 gcgatcttgc gataagtcgc attcaaggtt ccgatgtcga agccttctcg gccgattaca
     2941 tattgaacga gataggattg cgtcagcgcg gcatcgggcg cgatcttctg ctcatcgagc
     3001 ggccttaatg cctggacgta gcccgtcgtt ttgtcgacca tcagcgtata aggctcaacc
     3061 gtcttaagcg gcatgaggag cacgagcgcg attgcctcaa cgacggcaag caatcccgcg
     3121 gcggcagcaa ttacccaggc gatccgatgc gaacttcgca tcgactgcac acgatcgcgg
     3181 ttccagcttg ccgcttcggc ataataggtg tcgagcgtct cgcggctgtg cttgttcatt
     3241 gtgcaccgtc gcgtcgggtc gcgagcgcgg aaacgcgcac tcctggtttt cggctaaagc
     3301 tcctgcccaa cggaacgaca acgcgctcgc ccggctgcgc gcctgtccgc gcaccgggtg
     3361 cacgatactg cgacgaggtg gatgaaatca gaatcatgga agggctcgcc tccctagcgc
     3421 ttgctgtcga aaacacgctt gcaattgccg aagcgcggct ccgttcaatc tgagcttcgg
     3481 tcgaacgtgt gctgctgatg cggagaggcg aggggcggtc atgctgcgtt ccagtcccgc
     3541 cgcgctccat tcgcatgaaa ttcgcgaggc ggaatgccgc gctcagcctg aagcaggcgt
     3601 aaaggctgca cgcgagcatc agcgaaaaga ggcaagtgat gacgaacagt tcggttggca
     3661 tgctcgggag cgcctcgccg gcaccgcggc gcgcaagaac attgccgacc catggttcaa
     3721 cgacgccaag ctcgagcccc agcacaatcg ctgccgcaac ggcggcgagt cccgttccgg
     3781 caaggacccg tacccaccct tcaaacaggc tacgcgtgtt gtcgaacagg aggaaggcaa
     3841 tgaagaaggg ccccaagcca agcagcaagc cggcaatgac tcggacgatg ctgagcgccg
     3901 caatcgagga gatcaggaac aaaactcggg agccaccgag cgcgaacgaa tcaaatccga
     3961 tgaacggcgg aggcggcaca tcacgatagg catttgccgg cgcattgcca ggccccagga
     4021 tcgcaagccg caccaacgcg ccgtcagcaa gatcgagccg ctcgacaagc gttccgtcgg
     4081 aacccgcaac aggaacgcgc gtcccaattt cgctgacgag ttggccagga ccatccgtca
     4141 cgagatcata gacaatcgtc tcgtaggccg gccaacttgt ggcaagcgcg aagaccgcgc
     4201 cgattttcac gaacgcaagc gtcgcaccgc gtagcgtgaa gcttgagccc agcagcaaat
     4261 tatagccgat cagcgcgatg aagatggtaa gaaaggcact cagcaccatc atcaagctcg
     4321 atcctggcgc cgataatgcc gtccaggcac cagtcccaag actctgtgcc tgacagtcga
     4381 tgtagcccgt catcgagccg atgaagccgc cgccctgatg tcctacggaa caagcgtcga
     4441 tcatgcgacc tccagcaggc gcggcagcca ggcttccgga tcatcgccgg tctcaagccg
     4501 gatttcgtcg agcagccgca ccgtccgctc gcgtcccgaa agaatggtca agatgtcctt
     4561 ctcgccggca agattgagcc ttgcgacgac gctgtcattt ccatgcttga tgagaaaaca
     4621 gtgcgcgctg tc
//
LOCUS       DASRBJ010000093        11673 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_9483,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000093 DASRBJ010000000
VERSION     DASRBJ010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 11673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11673
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9483"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            225..554
                     /locus_tag="VE968_02650"
     CDS             225..554
                     /locus_tag="VE968_02650"
                     /inference="COORDINATES: protein motif:HMM:NF020496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1905 domain-containing protein"
                     /protein_id="HZU50756.1"
                     /translation="MGGEPFGAQFKSGAMISFTASLKLWRSDEGSSHFVTVPPEHAGE
                     IKAHALMVKRGFGSVKVEVRVDDVTWRTSIFPSKDGGYFLPIKIAVVRSTGKRESDLL
                     EITMDLI"
     gene            641..1648
                     /locus_tag="VE968_02655"
     CDS             641..1648
                     /locus_tag="VE968_02655"
                     /inference="COORDINATES: protein motif:HMM:NF013117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HZU50757.1"
                     /translation="MNTAQNAASGSSATAPVHGAHLFGITLIGATSDNLHKLLLTAGF
                     LVVGWLVSRALRAILELFIGSRSGTRFQFWAKQGVSLVIAAILILGVMSIWFDNPARL
                     AGVVGLIGAGIAFALQRVITAVAGYFVILRGKTFNVGDRIMMGGVRGDVIDLSFMQTQ
                     IMEMGQSPKEQGDAPSMWVRSRQFTGRIVTVTNDKVFDEPVYNYSHDFPYIWDEINLP
                     VRYEDDRAKAEAILLEAARRHAVTRAKIGDEEVKRLEENFGIKVGDIDPQTFWRITDN
                     WLEITVRFLAPDHGIRRMKDEMSRDILEGLDKANMGIASGTYAIVQVPPIKIEGVQPR
                     Q"
     gene            complement(1642..2127)
                     /locus_tag="VE968_02660"
     CDS             complement(1642..2127)
                     /locus_tag="VE968_02660"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HZU50758.1"
                     /translation="MLDELGVPIYTTDNEGRVTYWNRACVDLAGHELRLGEDRWCVTW
                     QLFTMTGEPLQREDCPVAQAIKHRKRVRDVIVIAERPDRSRMAFKAYPTPLFDTDGRL
                     SGAVNMLIDVTEEQSEALHEQAERCRRLAEATYDRATCKILGDMAEGFEETAGRLSKN
                     H"
     gene            complement(2352..3080)
                     /locus_tag="VE968_02665"
     CDS             complement(2352..3080)
                     /locus_tag="VE968_02665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010413453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HZU50759.1"
                     /translation="MADRLAEQEANIALLIDADNASPEHLDEVLLVLGELGTINIRRA
                     YGNWAKASLKGWGNLTGTHSIIPMQQFDVVKGKSATDMRMTIDAMDLLYRGNVDGFGI
                     MSSDSDFLPLAQRIREDGLPVYGFGTSKTPISFQQACTRFFDVGALAIDDGEELEQPE
                     AEAGQRPVDPELLQVLGAAYKASKRDEEGYTPLSELGQRAKAVSSFAARNYGYTRLSD
                     LIKAVPNFEVKSGDEGRLLVKRLR"
     gene            3254..3697
                     /locus_tag="VE968_02670"
     CDS             3254..3697
                     /locus_tag="VE968_02670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50760.1"
                     /translation="MRKLGLAAALAATVAVAGCSDYPGYGYDPYYGHGYYHDGYYGPN
                     GYYGGNGYYGPNGYYGPNGYYAPQGYNSQGANVATGAAVGAVGGAIAGKALGGSAVGG
                     AVAGAILGGVLGATVNGRQYYRDTRGYCYYVDQYGQPHYSYDIRC"
     gene            complement(3711..4364)
                     /locus_tag="VE968_02675"
     CDS             complement(3711..4364)
                     /locus_tag="VE968_02675"
                     /EC_number="4.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HZU50761.1"
                     /translation="MPYLKQLIEGYRRFRQNDWARERERWAELADGQNPEVMILACAD
                     SRSDPAQIFDARPGEMFVVRNIAALAPPYETSHGFHGVSSALEFAVTQLKVGEILVMG
                     HGKCGGCAAALTGQFDDVPPGEGHFIGDWVRMLAPTRDEVRARHENLDRQAFLDMEHE
                     AVKVSLANLRTFPWIADRERAGELKLHGAHFSIAEGRLYLLDEAEGQFRPVTEAQEL"
     gene            4430..5350
                     /gene="lipA"
                     /locus_tag="VE968_02680"
     CDS             4430..5350
                     /gene="lipA"
                     /locus_tag="VE968_02680"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015456970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HZU50762.1"
                     /translation="MNAPAAVPPKQRKPDWIRVKAPVSEGYHATRRLMRELNLATVCE
                     EAACPNIGECWTKKHATVMILGDTCTRACAFCNVKTGMPRAVDPLEPEHVAAAAAELG
                     LEHIVITSVDRDDLADGGARQFVRVIEALRKRTPSTTIEILTPDFRNKSDAAVEEIVA
                     AGPDVYNHNLETVPRLYPTIRPGARYYASLRLLESVKRKAPHIFTKSGIMVGLGEQRL
                     EVHQVMDDMRSAGVDFLTMGQYLQPTPRHAKVEEFVSPKSFDAYAAIARAKGFLLVAA
                     SPLTRSSYHAGDDFKKMQAARIAQLERSNS"
     gene            5350..5811
                     /locus_tag="VE968_02685"
     CDS             5350..5811
                     /locus_tag="VE968_02685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HZU50763.1"
                     /translation="MPRHSETRHLPYSPEQLFDLVADVARYDEFLPWVVAVRVRSSSE
                     SQTIADLVVGFNAFKERFTSRVHKDRPHEICVDYVEGPLKYLHNEWKFDRTSDGGTNL
                     FFSVDFAFKSRLFESLAGAMFDRALRRMTSAFEQRAAALYGISNSSAQSAA"
     gene            complement(5772..6275)
                     /locus_tag="VE968_02690"
     CDS             complement(5772..6275)
                     /locus_tag="VE968_02690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007689197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HZU50764.1"
                     /translation="MTDKLLPNELVEKARAVVEANRAAHRRVAIAESCTGGLVSAALT
                     EIPGSSEIFEAGYVTYSNAAKIADLKVSEEVVDTFGAVSVATAWAMARGALAASDADV
                     AVAITGIAGPGGGTAQKPVGTVVFARAERDADPAKIVADQKFFDEKTRSGVRLQAALC
                     ALELLMP"
     gene            complement(6272..7414)
                     /locus_tag="VE968_02695"
     CDS             complement(6272..7414)
                     /locus_tag="VE968_02695"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HZU50765.1"
                     /translation="MTTTGLIVAAGSGSRMSDNLPKQFHRLGGKPVLRWAVEALARHP
                     AIKAVRVVVGPGQQALAYEALEGLDVGNLIEGGAQRADSVRAGLEAIEGTAVLVHDAA
                     RPFCPSEIIDRLLARLEFFDGAAPVLPVGDTLAKAGKMLGDPVDRTGLTRVQTPQAFR
                     LAALKAAYERWKGPSPTDETSVVRAAGMEVAAVEGDPRLEKLTFPADLRRAEEWLAGR
                     LTPRTGLGFDVHAFAGNGPIMLGGVEIPHGRGLAGHSDADVVLHAITDALLGAAGLGD
                     IGEHFAPSDSRWKNASSSLFLGHAVDLLRQRGAMIDHLDCTIIAEEPKVGPHRERMRA
                     RIAEIAHLRVDQVSVKATTTETLGFTGRREGIAAQAVASIRMGLSL"
     gene            7481..8479
                     /gene="dusB"
                     /locus_tag="VE968_02700"
     CDS             7481..8479
                     /gene="dusB"
                     /locus_tag="VE968_02700"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010546326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HZU50766.1"
                     /translation="MSELNPIEIGPVRIDAPVILAPMTAVTDLPFRRIVKRYGAGLTV
                     SEMIASQAMVRETRQSLQKAMWDPCEEPVSVQLAGCEPHIMAEAAKLNEQRGAAIIDI
                     NMGCPVKKVVNGEAGSALMRDLPLAARLIKATVDAVNVPVTLKTRMGWNHDNLNAPEL
                     ARIAEDLGVQMITIHGRTRCQMYKGEADWAFVRKVKRAVSIPVIVNGDICSIDDARTA
                     LRQSGADGVMIGRGAYGRPWFVAQVMSELTGGGHRRDPSLDEQLAAMLEQYDEMLRLY
                     GTHTGVNLARKHIGWYTKGLPGSAELRNRVNQQDDPKIVTHMLQEFYAPWLVRSAA"
     gene            8540..10795
                     /locus_tag="VE968_02705"
     CDS             8540..10795
                     /locus_tag="VE968_02705"
                     /inference="COORDINATES: protein motif:HMM:NF039586.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU50767.1"
                     /translation="MDAVTADSPVISEQENWLQRERASGRFYDRLAWLVAGFLVLMVA
                     VSIWVLRRAVEPGNLLWPPLIALLLIAILLPAIALMALYARRVALRRAEEGGLGSGRL
                     HVRLVALFSVLAAVPTVLVAIFASVLFQSGLEFWFSNRARNMLENTAQLAHTTYQNEV
                     DRVANNTLTAAGDTADYLRKFPIDDPRLWAGFARNQVLNRLLSEAIIFTYGPDKQIRT
                     LLLVDPYDRPLSRDIPPAAIERLATEKVVPIESANRIGAVTKLDYGPDTYLYEARVFD
                     PQFRQQIKRSNDVLKDYRALLNKSRVNQLRFNAALLLGALIIVGLAIFTALKLADRMV
                     RPVGALVTAAGRIERGDFSTRVPISTSDDEVQTLSEAFNRMTDRLQEQTTELRTANTQ
                     LDTRRAFMEAVLENVSAGVIAVDAAHRIRLVNRSAENLLQGKQRDVEGRGLADISPEL
                     SEFMRGDQSEANVLIASEATQRTLAVKRVRYQDGSVLTFDDITDQLSDQRRAAWSDIA
                     RRIAHEIKNPLTPIQLAAERLQRRFGKEVSSDQETFERLTGTIVRQVGDLRRMVDEFS
                     NFARMPKPVFRDEDVHEIARHALFLHEVAHPGISFVLEPVDGEFHMVCDRRQLSQALT
                     NIVKNSVEAIESRRNRGEHSIAGDRIELRLRREASQLIVDVLDTGIGLPEERERLTEP
                     YMTTRVRGTGLGLAIVKKIVEEHQGEIAFLDRAGGGTHVRITFETDKLAQLANETEPA
                     SANVQKTDEEA"
     gene            10795..>11673
                     /locus_tag="VE968_02710"
     CDS             10795..>11673
                     /locus_tag="VE968_02710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014500384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HZU50768.1"
                     /translation="MALEVLVVDDEADIRELVSGVLEDEGYAVRTAADSSQTLDAIEE
                     RRPSMVLLDVWLQGSKLDGIQLLQEIKQRDSTIPILMISGHGNLDTAVAAVREGAIDF
                     IEKPFEAERLIYLVDRATETERLRRENESLRQQVGQEDQLHGSSVAINTVRATLKRVA
                     PTGSRVLISGPPGVGKEIAARMIHQWSPRAKAPFIVLSAAMMSPERVEEELFGSETDG
                     VMRPGLLEHAHGGTLFLDEIADMPLTTQAKILRVLTDQSYTRVGSQRPVKVDVRVLSA
                     TSRNLQDEISAGHFRED"
BASE COUNT         2392 a         3409 c         3484 g         2388 t
ORIGIN      
        1 gcgacgcaca tcctcgcctt cgagggggac agccgcgtcg agtggtttga aggtaatttc
       61 gaggcctatg aggaagataa ggtccgccgg ctcggtgaag aggcgacgcg cccacatcga
      121 atgagctatc gcaagctcac ccgctagcca cagggggctg cccgaagatc caagcttgcg
      181 cctgccacgg tatggttcaa aaggcgacgt gcgaatggcg aagaatgggt ggcgagccgt
      241 tcggcgcaca gttcaagagt ggggcaatga tcagctttac tgcctcgttg aagctttggc
      301 gaagtgacga gggaagctcg cacttcgtca ctgttccgcc cgagcatgcc ggcgaaatca
      361 aggcgcacgc tttgatggtg aagcggggct tcggctcggt aaaggtcgag gtgagggtcg
      421 atgacgtcac ttggcgcacg tccatctttc cctcgaagga cggcggctat ttcctgccga
      481 tcaagatagc ggtcgtgaga agtaccggca aacgggagag cgatctgctc gagatcacga
      541 tggaccttat ttgaccggcg agtggcagcg tcaggtgccg ttggaaccgt tgcgaagtgc
      601 ttccagttga gagggcgtgc agcagagcct tactgatttc atgaacaccg cacagaacgc
      661 ggcgagcggt tcttcggcaa cggcacccgt tcacggggcg cacctgttcg ggattactct
      721 catcggtgcg acgtcagaca atcttcacaa actcttgctg actgcgggtt tcttggtcgt
      781 gggctggctg gtttcccggg cgcttcgcgc tattctggag cttttcattg gcagcagaag
      841 cgggaccagg ttccagttct gggccaagca gggcgtcagt ctcgtcatcg cggcgatact
      901 gatccttggt gtcatgtcga tctggtttga caatcccgcg cggcttgctg gggttgtcgg
      961 gctaatcggc gccggaattg cgtttgcgct tcagcgcgta atcactgctg ttgcaggtta
     1021 tttcgtgatt ctccgcggca agaccttcaa cgttggtgac cggatcatga tgggcggtgt
     1081 gcgcggtgac gtcatcgatc taagtttcat gcagacgcaa atcatggaga tgggccagtc
     1141 accaaaagag cagggcgatg cgccttcgat gtgggttcgc agccgccagt tcacaggacg
     1201 catcgtcacg gtcactaacg acaaggtctt cgacgagccc gtctacaatt acagccacga
     1261 cttcccttac atctgggacg agatcaactt gcctgttcgc tacgaggacg accgcgcgaa
     1321 agccgaggcg atcctccttg aagccgcgcg acgccatgcg gtcacgaggg ccaagatcgg
     1381 cgatgaggaa gtgaagcggc tcgaagaaaa tttcgggatc aaggttggcg acattgatcc
     1441 tcagacgttc tggcggatca ccgacaactg gcttgaaatt accgtgcgct ttcttgcgcc
     1501 ggatcatgga atccggcgca tgaaagatga aatgagccgc gatatcctcg aaggcctcga
     1561 taaggcgaac atgggtatcg cctctggaac ctatgcgatt gtgcaggtgc cgccgatcaa
     1621 aatcgagggc gtgcaaccac gtcagtgatt ttttgagagc ctgccagcgg tctcttcgaa
     1681 tccctctgcc atgtcaccca ggatcttgca ggtagcgcga tcataggtcg cttcggccag
     1741 ccgccgacaa cgctcggcct gctcgtgcaa tgcctcactt tgctcctcgg tcacgtcgat
     1801 tagcatgttg acagcgccgg atagccgacc atccgtgtca aacaggggag tgggatacgc
     1861 cttgaaggcc attcgagagc ggtcaggtcg ctcagcgata acaattacat cgcggacgcg
     1921 ttttcgatgt ttgatcgcct gggccaccgg gcagtcttcg cgctggagcg gctctccagt
     1981 catggtgaaa agctgccacg tcacgcacca tcgatcctcg ccaagcctca gttcatggcc
     2041 agctaagtcg acgcaggcgc ggttccagta cgtaacgcga ccctcattgt ccgtcgtgta
     2101 gattggaact cccaattcat cgagcattgc tctgcactcg ctaccggtag caagcgcgct
     2161 gagggcggtt tcaagtaaag cttcgggatc gtgccggacg cgcatgactt acaaactaat
     2221 ctgggttggg cgagaaccga cgattggacg gcctgttcct tcgcccaaca acaaaactgg
     2281 tcgattgtgt cgctgtcgca acagcgtgac ggacgagcgt tcagcaagtt gctggttcaa
     2341 gcaccaactt gtcagcgcag ccgttttacc agcaggcggc cttcatcgcc gctcttcacc
     2401 tcgaagtttg gcacggcctt gattaggtcc gaaagccgcg tgtagccata gttccgcgca
     2461 gcgaagctcg acacggcttt tgcgcgctgg ccgagctccg acagtggagt atagccttcc
     2521 tcgtcccgtt tcgatgcctt gtaggccgca ccgagcactt gaagaagctc cggatcaacc
     2581 gggcgttgcc cagcctcggc ttctggttgt tcgagttctt ccccgtcgtc gatggcaagc
     2641 gcaccgacat cgaagaaacg cgtgcacgcc tgctgaaagg aaattggtgt cttgcttgtg
     2701 ccgaaaccat aaacggggag gccgtcttcg cggatacgct gagccaaggg cagaaaatcg
     2761 ctgtccgacg acatgattcc aaacccgtcg acattgccgc gataaagcag gtccatggca
     2821 tcgatcgtca tgcgcatatc cgttgcgctc ttccccttca cgacatcgaa ttgctgcatt
     2881 gggatgatcg aatgcgttcc agtaagattt ccccagcctt tgaggctcgc cttggcccaa
     2941 ttgccgtagg cacggcggat gttgatggta cctagttccc cgagaaccag aagcacttcg
     3001 tcgagatgtt cgggtgacgc gttgtcagcg tcaatcaaca gcgcaatgtt cgcttcctgt
     3061 tcggccagtc gatccgccat tcgcatcctt tccggcgagt ccttcatccc ccgtctgtag
     3121 cgcggcgtcg cggaatggcc acagcccggc tctgccgcag ttccaagctg aaccagggat
     3181 gatcggtccg ggaacgaaac accgactaga cggtagatga cgccacaggg ggcgagttga
     3241 ggaggacgag acgatgagga agcttggtct tgctgcagcc ctcgctgcca cagtcgctgt
     3301 tgcgggttgc tccgactacc caggatatgg ctatgatccc tattacgggc atggctatta
     3361 tcatgatggc tactacggac cgaacggcta ctacggaggc aatggctatt atgggccgaa
     3421 cggctactat ggcccgaacg gctattatgc gccgcaagga tataacagcc agggcgcaaa
     3481 tgttgcgact ggagcagcgg ttggcgccgt tggcggtgct attgccggca aagcgctcgg
     3541 aggaagtgcg gttggtggcg ccgtcgctgg cgcgatccta ggcggagtcc ttggtgcgac
     3601 ggtgaacggc cgacaatatt atcgcgatac ccgtggctac tgctattatg tggatcagta
     3661 cgggcagccg cactacagct atgacattcg ctgttaagtc aacagcttat tcataattct
     3721 tgagcttctg tgacggggcg gaattgtcct tccgcctcgt caagaagata aaggcggcct
     3781 tcagcgatcg agaaatgggc tccatgaagc tttagctcgc cggcgcgctc gcgatcggcg
     3841 atccagggaa acgtgcgaag gtttgcaaga ctgaccttta ccgcctcgtg ttccatgtcg
     3901 aggaacgctt gccgatcgag gttttcatgc cttgcgcgaa cttcatcgcg cgtcggagcc
     3961 agcattcgta cccagtcgcc gatgaagtgc ccttcgcctg gcggaacatc gtcgaattgc
     4021 ccggtgagcg ctgcggcgca gccgccgcat ttgccatgtc ccataacgag gatctcgccg
     4081 accttcagct gtgtcacggc gaattccagc gctgaagaga cgccgtgaaa gccatggctc
     4141 gtttcgtagg gtggtgcgag tgcggcgatg ttccgcacga cgaacatttc gccggggcgg
     4201 gcatcgaaga tctgtgctgg atcgctgcga ctgtcggcgc aggcaaggat cattacttcg
     4261 gggttctggc cgtcggcgag ctcggcccag cgttcacgct cccgagccca gtcgttctga
     4321 cggaagcggc ggtatccttc gatgagctgc ttgaggtaag gcatggttcg cggctaacgg
     4381 cgcgcagcag gggtggcaag ccattgcagc aatcgctatc tgcctcgcca tgaatgctcc
     4441 cgccgccgtt ccgcccaagc agcgcaagcc agactggatc cgcgtcaagg cgcctgtcag
     4501 cgaaggctat catgcgacac gtcgcttgat gcgcgagctt aatctcgcga ccgtgtgtga
     4561 ggaagcggcg tgcccgaata ttggcgaatg ctggaccaag aaacacgcta cggtgatgat
     4621 tcttggagac acctgcacgc gcgcatgcgc gttctgcaac gtcaaaaccg gcatgcctcg
     4681 agcggtcgac ccgctcgagc ccgagcatgt cgcggcagcc gccgccgagc ttgggctcga
     4741 acatatcgtc atcacgtcgg ttgaccgcga tgatcttgcc gatggtggtg cgcgccagtt
     4801 cgtccgggta atcgaagcgc tgcgcaagag gacgccctcg acgacaatcg aaattctaac
     4861 tcctgacttt cgcaacaaga gcgatgctgc cgttgaggaa atcgtcgccg ccggcccgga
     4921 tgtctacaat cacaatctgg agacggttcc acggctctat ccaaccatta ggccaggggc
     4981 gcgatactat gcgtcattac gtctcctgga gagcgtgaaa cgcaaggcgc cgcacatctt
     5041 caccaagtcc ggcatcatgg ttgggcttgg cgaacaacga ttggaagttc accaggtgat
     5101 ggacgacatg cgctcggcgg gagtcgattt cctgaccatg gggcaatatc tgcaaccgac
     5161 accgcgccat gcgaaggtcg aggaatttgt cagcccgaag tcgttcgatg cctacgccgc
     5221 gattgcgcgc gccaagggct ttctcctggt cgccgcctca ccgctaacgc gctcgagcta
     5281 tcacgccggc gacgatttca agaaaatgca agcggcacgg atcgcgcagt tggagcgttc
     5341 aaacagctga tgccgcgtca cagcgaaacc aggcaccttc cgtactcgcc tgagcaattg
     5401 ttcgatcttg tagcggacgt tgcaaggtac gacgagttcc tgccgtgggt cgttgctgtc
     5461 cgggtgcgct cttcgagtga atcgcagacg attgccgacc tggtcgttgg gttcaacgcc
     5521 ttcaaagagc gtttcaccag ccgcgtccac aaggaccggc ctcacgaaat ctgtgtcgat
     5581 tatgtcgaag gaccgctcaa atatttgcat aacgagtgga agtttgaccg cacttccgac
     5641 ggcggaacaa acctgttttt ctctgttgat ttcgcgttca aatcgcgctt gttcgaaagc
     5701 ctcgccgggg ccatgttcga tcgtgcactt cggcgaatga cttccgcctt cgaacagcgg
     5761 gcggccgcgc tctatggcat cagcaattcg agcgcacaga gcgctgcctg aagccgaacg
     5821 ccagaacgcg ttttctcgtc gaagaacttc tgatcagcca cgatcttggc gggatccgca
     5881 tcccgttcgg cccgggcgaa cacgaccgtt cccaccggtt tttgcgctgt tccgccgccc
     5941 ggacctgcta ttccagtaat tgcgacggca acatccgcat ccgatgcggc aagcgctcct
     6001 cgagccattg cccaagccgt cgcaacgctc accgcaccga aggtatcgac cacttcctct
     6061 gataccttga ggtcggcgat tttcgccgcg tttgaataag ttacatagcc agcttcaaaa
     6121 atttccgagg agcccggaat ctcggtaagc gccgcgctta caagcccgcc agtacaactc
     6181 tcggcaattg ccacacgacg atgcgcggcg cggttggctt cgacgaccgc gcgcgctttt
     6241 tcaaccagtt cattcggcaa cagcttgtcg gtcacaggct taatcccatc cggatgctag
     6301 cgaccgcctg agcggcaatg ccctcgcgac ggccggtaaa tcccaaggtc tcggtggtcg
     6361 ttgctttcac gctaacctga tcaacgcgca agtgcgcgat ctcggcaatt cgcgcgcgca
     6421 ttcgctcgcg gtgagggcca accttgggtt cttcagcgat gatcgtgcaa tcaaggtggt
     6481 caatcatcgc tcctcgttgg cgtagaaggt ccaccgcatg gccaaggaac aatgatgaac
     6541 tggcgttttt ccaccggctg tccgacggcg cgaaatgctc gccgatatcc ccgagacccg
     6601 ctgccccgag cagcgcgtcc gtaatcgcat gcagcacgac atcggcgtcg ctgtgaccgg
     6661 caagtcctcg tccatgagga atttcaaccc cgccgagcat gatcggcccg tttccggcga
     6721 aggcatgcac gtcaaagcca agtccagtgc gcggcgtcaa acgacccgca agccattctt
     6781 ccgctcgtct caagtcggcc gggaacgtga gcttttctag ccgcggatca ccctcaaccg
     6841 ctgcaacttc cattcccgca gctcgaacga cgctcgtttc atcagtcggg gaggggcctt
     6901 tccatcgctc gtacgctgcc ttcaacgcgg cgaggcgaaa tgcctgcgga gtctgcacgc
     6961 gggtgagtcc cgttcgatcg accggatcgc ccaacatctt tcccgctttc gcaagcgtgt
     7021 caccgacggg aagcacggga gccgcgccgt cgaagaactc gaggcgagcg agaagccggt
     7081 cgatgatttc ggatggacaa aacggtcggg ctgcatcgtg gacaagaacg gcggtgccct
     7141 caatcgcttc caagcctgcg cgcaccgaat ccgcgcgctg tgcgcctccc tcgatcagat
     7201 tgccgacatc aagcccttcc agtgcttcat aggcgagtgc ctgctgacct ggtccaacaa
     7261 cgacgcgcac agccttgatc gccgggtggc gtgcgagcgc ttccacggcc cagcgcagga
     7321 caggctttcc tccaagtcgg tggaattgct ttggcaagtt gtcgctcatc cgcgagccgc
     7381 ttcccgcagc aacaatcaat ccggtcgtgg tcacggcgcg tcggtctaag gccgctcggc
     7441 ttgtccgcca agggttgatc cactatctgc cgcaaacccc atgagcgagt tgaatcctat
     7501 cgagatcggc cccgtgcgga tcgatgcgcc agtaattctg gcgccgatga ctgccgtgac
     7561 cgacctgcct ttccggcgca tcgtcaagcg ctatggcgct gggcttaccg taagtgagat
     7621 gatcgcgagc caggcaatgg tccgggaaac acgccaatcg ctccagaaag cgatgtggga
     7681 cccttgtgag gagcccgtat cggttcaact cgctgggtgc gagcctcaca tcatggcgga
     7741 agccgcgaag ctcaatgaac agcgcggggc ggccatcatc gacatcaaca tgggctgtcc
     7801 cgtgaagaag gtcgtgaatg gcgaggcggg ctcggccttg atgcgcgatc ttccgcttgc
     7861 tgcacgattg atcaaggcga cagtcgatgc cgtcaacgtg ccggtgacgc tcaagacccg
     7921 aatggggtgg aaccacgaca atctcaacgc tcctgaactt gctcggatag ccgaggacct
     7981 cggcgtccag atgatcacca ttcacggtcg cacgcgctgc cagatgtaca agggtgaggc
     8041 ggactgggca ttcgtgcgaa aggtcaagcg ggccgtatca atcccggtaa tcgtcaacgg
     8101 tgacatttgc tcgatcgacg atgcgcgcac cgcgcttcgc cagtcgggag ccgatggagt
     8161 catgatcggc cgaggcgctt acgggcgacc atggttcgtt gcacaggtca tgagcgaact
     8221 tactggcggt ggtcaccggc gcgatccgag ccttgatgaa cagctcgcag cgatgctcga
     8281 acaatatgat gagatgctgc gcctatacgg cacccatacg ggcgtaaatc tcgcccgcaa
     8341 gcacatcggc tggtacacta agggcctgcc tggatcggcg gagctgcgca atcgggtcaa
     8401 ccagcaggat gatccaaaaa tcgttacgca catgttgcaa gaattctatg cgccgtggct
     8461 cgtccgctct gctgcgtgat aaaaagcctc gatcaacact gtgttatttg agcaacggcc
     8521 atgctagtgc cgtcagcaga tggatgcggt tacggctgac tcgccggtga tttcagagca
     8581 ggagaactgg ctgcagcgcg aacgcgcaag cggtcggttc tatgatcgct tggcgtggct
     8641 cgtcgcaggc tttctcgtgt tgatggtggc cgtcagcatc tgggtgctcc gccgtgcggt
     8701 cgagcccggt aacttgctgt ggccgccgct cattgcgctc ctgctgattg cgatcctcct
     8761 cccagcgatt gcgctcatgg cactttatgc gcgtcgtgtt gcccttcgac gagcggagga
     8821 agggggcctc ggaagcggaa gactgcacgt ccgcttggta gcgcttttct ctgtcctcgc
     8881 ggcggtgccg acagtcttgg tcgcgatctt cgcgtcggtg ctattccaaa gtggacttga
     8941 gttttggttt tcgaaccgcg cgcgaaacat gctcgagaat accgctcagc tggcgcacac
     9001 gacctaccaa aatgaagtcg accgagtggc gaataacacg ctgaccgctg ctggagatac
     9061 ggccgactat ctgcgcaagt ttcccattga tgatccgcgg ctctgggcgg gtttcgctcg
     9121 aaaccaggtc cttaatcgcc tgctctcgga agcgatcatc ttcacctacg gcccagacaa
     9181 gcagatccga accctgctct tggttgatcc ttatgatcgg ccgcttagta gggacatacc
     9241 gcctgcagcc attgaaaggc tcgcaaccga aaaagtggtt ccgatcgagt cggcaaatcg
     9301 catcggtgct gtgacgaaac tcgactatgg gcccgacacg tacctttacg aagctcgcgt
     9361 tttcgatccc caatttcgcc agcagatcaa acgttcgaac gacgttctta aggactatcg
     9421 ggcgctcctc aacaagtcgc gagttaatca gctacggttc aacgccgcgc tactgcttgg
     9481 cgcactgatc atcgttggcc tcgcaatctt taccgccctc aagcttgccg atcggatggt
     9541 acgaccggtt ggcgctcttg tgactgccgc gggccgcatc gaacggggtg acttctcgac
     9601 gcgtgttcca atctcgacca gcgacgatga ggtccagacg ctttctgaag ccttcaatcg
     9661 gatgacggac cggctccagg aacagactac cgaactgcgc accgcgaata ctcaactcga
     9721 cacccgccgt gcgttcatgg aggcggttct cgaaaatgta agcgcgggcg taatcgcggt
     9781 cgatgcagcg caccgtattc gccttgtgaa ccgctcggct gaaaatctgc tccaaggcaa
     9841 gcagcgcgac gtcgagggaa ggggccttgc cgatatttcg cccgagctca gcgaattcat
     9901 gcgcggtgac cagtccgagg cgaatgtgct cattgcaagc gaggcgaccc agcggactct
     9961 cgcggtaaag cgggtgcgct accaggacgg gtcggtgttg accttcgacg acatcacgga
    10021 ccagctgtcg gatcaacgca gagccgcgtg gtccgacatt gcgcgtcgga tcgcgcatga
    10081 gatcaagaac ccactaaccc caatccagct cgctgccgag cgactgcagc gccgatttgg
    10141 caaggaagta agctccgacc aggaaacatt cgagcggctt actggaacaa ttgtcaggca
    10201 ggtcggcgat cttcggcgaa tggtcgatga gttttccaat ttcgcgcgga tgccaaagcc
    10261 ggttttccgc gacgaggatg ttcacgagat cgcgcggcat gccttgttcc tccacgaggt
    10321 cgcgcatccc gggataagct tcgtgctcga gccggttgat ggcgagttcc atatggtctg
    10381 tgatcgacgt cagctctcac aggcattgac gaacattgtg aaaaatagtg ttgaagccat
    10441 tgaaagtagg cgtaatcgcg gtgagcatag catcgcgggc gatcgtattg agctgcgtct
    10501 aagacgcgaa gcgtcgcaat tgatcgtcga cgtgctggac accggcattg gtctacctga
    10561 agagcgcgag cgtcttaccg agccctacat gacgacgcgg gtgaggggga ccggccttgg
    10621 cctcgcgatc gtcaagaaga tcgttgagga gcatcaaggc gagatcgcct tcctcgaccg
    10681 cgctggaggt ggcacccacg tccgcattac gttcgaaaca gacaagcttg cgcagctcgc
    10741 caacgagacc gaaccggcga gcgcgaatgt tcagaagact gacgaggaag cctgatggct
    10801 cttgaagtac tggttgtgga cgatgaagca gacatccgcg agttggtgag cggagtgctt
    10861 gaggacgaag gctatgccgt aaggactgca gccgacagta gtcagacact cgacgccatc
    10921 gaggagcggc gcccctcgat ggtgctgctc gacgtctggc tgcaaggatc gaagctcgac
    10981 ggtatccagc ttttgcagga aataaagcag cgggattcga cgatcccgat cctcatgatt
    11041 tcggggcatg gcaacctcga caccgccgtt gcggcggtga gggaaggggc gatcgacttc
    11101 atcgagaagc cattcgaggc ggaacgcctc atctatctcg tcgaccgggc aaccgaaacg
    11161 gagcggctca gacgcgaaaa cgaaagcttg cgtcagcagg ttggccagga ggaccagctg
    11221 catgggagct cggtcgcgat caacaccgtc cgcgcaacgc taaagcgcgt tgctccaacc
    11281 ggaagccgag ttctgatctc cggcccgccc ggggtgggca aggagattgc cgcgcggatg
    11341 attcaccagt ggagcccgcg cgcgaaggcg ccattcatcg tgctctctgc ggcaatgatg
    11401 agccccgaac gtgtcgagga agagttgttt gggagtgaga ccgatggcgt gatgcgcccg
    11461 ggcctgctcg aacatgccca tggaggaact ctgttcctcg acgaaattgc cgatatgccc
    11521 cttacgacgc aggccaagat cctgcgcgtc ctcaccgacc aaagctacac gcgcgttgga
    11581 agtcagcgac ccgtgaaggt cgacgtgcgc gtcttgtcgg cgacgtcgcg caaccttcag
    11641 gacgaaatca gcgcgggcca ttttcgagaa gat
//
LOCUS       DASRBJ010000094         5558 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_9514,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000094 DASRBJ010000000
VERSION     DASRBJ010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5558
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9514"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..233
                     /locus_tag="VE968_02715"
     CDS             <1..233
                     /locus_tag="VE968_02715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HZU50769.1"
                     /translation="FIEKKLYPNVDFYSGVILNAIGFPTDMFTALFALARTVGWVAQW
                     NEMIADPDQKIGRPRQLYVGPTQREYVPVDKR"
     gene            complement(230..1531)
                     /locus_tag="VE968_02720"
     CDS             complement(230..1531)
                     /locus_tag="VE968_02720"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU50770.1"
                     /translation="MLGRLDAAGRLISADPELETLQREAGSRLGELLALPQIAAVAEL
                     ARRLRTAVSRPAMAASAEHDIELWVRATPQGEEVDLALEGWTEHVAAPPRLAAILGGG
                     GEAGAEEMRNEWAADEELRILSLSSGLAELLGVNPDAVAGQPLTRIVRLDEDEAGEMP
                     LISALAARRNFTGQRARSRAIESRSIIISGEVVTGADGHFAGFRGWVEADSRAPQRRE
                     PGRESFDLALDEVLRSPLDQIIESAERIVERADGPLRSDYASYGSDIAAAARHLLSVL
                     SSMSEEPAAAGEPIDLAALAAEAVVMLETSAEERHAAIDLQDFGPLRARGEARAVIQI
                     LVNLIGNAIRYSPEGGRISVIFNEASGTASVTVQDSGPGVAEADQQRIFERFERGHQQ
                     ESGTGLGLAISRRLARSMGGDVTLDSAAGRGARFTLSLPAA"
     gene            complement(1554..2570)
                     /locus_tag="VE968_02725"
     CDS             complement(1554..2570)
                     /locus_tag="VE968_02725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50771.1"
                     /translation="MAADGSAPARAAGTGRLQAVRQDFFLDPGQRLTEQERALMTAML
                     RGLIRDVASAIRAALPRGRLPANDDGDASLIARLTSSKLVDEPHLMALLLRRADEERI
                     ATAARARSARREARVLQGFVSDNDGGVAAAAMAVILAKGRRRDRFGQYLILFDDLAQT
                     SAESLVHAIAAALRAELAEREGLTGADLELTHASRQVLEHRDERRGINALIAALVDVL
                     EATGTLTDELVVAAANEGEVAFVAEILSRRGGLSGEASIDELLSADPKRLMTLLRISQ
                     SSRNLAAGLLGSIGDLLGVDDAGAALAMFENMPDTEVQGVRAWLLTAPSYKAALEQLG
                     PSRG"
     gene            complement(2611..3819)
                     /locus_tag="VE968_02730"
     CDS             complement(2611..3819)
                     /locus_tag="VE968_02730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50772.1"
                     /translation="MAIGALIGAYQEDDGGGLRALLPLAGRTLLDYQVRCASAAGAAP
                     IVVVVERVPQGLQETFERLRSDGISIVPVSDVNEALSRFEAGSMILLIGDGVAPPLSL
                     LMSVSQSPVNLVATVGDDELHERFERIDAQSRWAGVALVDATLLGSTAAILGDWDLQS
                     TLLRRSIQEGARLVPAADTGGEPLLVNGAEDLASFQRHLVRSSRANRDDAASRYFLPP
                     VEDFATERLMGTAIRPGSFLWMALGLTLAGAICFSRGWLGAGMVLLLVSTPLDLLAER
                     LATLRLRPLPTRLWTRSALWPAAGVALLAIGWWETRHGTGWGALVSAASACAFAEAMR
                     IESSAFPPADEMWLLSRRNAVLLALPFAIAGQWTAYLVAMLLYAAVSFFLFQRVRHLA
                     PVDGKLTEIG"
     gene            3906..>5558
                     /locus_tag="VE968_02735"
     CDS             3906..>5558
                     /locus_tag="VE968_02735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50773.1"
                     /translation="MTPTPKRAEHLPPLDDAAESSNLLSSSIDFVEPAFDHREWQEQS
                     AQERGAGGRQVLGVALCIFAALWLAYAGWAAGRSLDSQSLSSPQLAQWLAIAAGPLAL
                     LGLVWLIFGRTRRKEAERFTRSVVTMRAEARSLEALLQVLAQRIDESRSQLTSISQQL
                     MDLGDETTVKLGNITRELDGSSEKLKVQGLALDRAADSARNDVAALLDDLPRAEQRAR
                     AVAEELRSVSSQSAEKTALLAQEVGNIGEQARTAEQLIAQATDNIAARLAEIEDAGAT
                     AAAQVRNAENAYANTLDTLLVRTAEALEQIRSGIDVQGAAVSALVAQASAGIGKAGSD
                     AAESLASNLSQATYSLEGLSTRVAEQDRASQHMIAEIERGLALIDQRFTELAANGDER
                     ANRFLGSLSRARTELDTLAAQASSQDGAISSLAERTSALRDSIEQLATEIRDGVGVAI
                     GEAQGGADRLAETAEAAKPSIGWLRDATSEANDKLAATAAQIAQQREHFSELLAGLDS
                     GVEEAQSKLAEFASSLVQVEREATSLSNETGPALVASLVQVKE"
BASE COUNT         1124 a         1798 c         1685 g          951 t
ORIGIN      
        1 atttcatcga gaagaagctc tatccgaacg tcgattttta ttcaggagtc atcctcaacg
       61 cgatcggttt cccgaccgac atgttcacgg ctctgttcgc gcttgcgcga acggtcggct
      121 gggtcgccca gtggaacgag atgatagctg accctgacca gaagatcgga aggccacgcc
      181 aactttatgt cgggccaacg cagcgcgaat atgtacccgt cgacaagcgc taggcggcgg
      241 gaagcgacag ggtaaatcga gcacctcttc cagccgcact gtcgagcgtc acgtcgccgc
      301 ccatcgaacg agcgagtctc ctcgaaatgg cgagtccgag gcccgtgccg ctctcctgct
      361 ggtgccctcg ctcgaatcgt tcgaagatgc gctgctggtc agcttcagca acaccaggac
      421 ctgaatcctg gacggtgacc gatgccgttc cacttgcctc gttgaatatg actgaaatcc
      481 tgcccccctc tggcgaatag cgaatcgcat tgccgatgag gttgacgagt atctggatga
      541 cagcacgagc ttcgccccgc gcgcgcaatg gtccaaaatc ctggaggtca atcgctgcgt
      601 gtcgctcctc tgcgctcgtc tcaagcatca cgacggcctc cgcggcaagc gccgcaaggt
      661 cgatcggttc gcctgccgcg gcaggttctt cactcatcga gctcaagacg gaaagaagat
      721 gcctggccgc tgctgcaatg tcgctgccgt agctcgcata atcgctccgg aggggcccgt
      781 cagcgcgctc cacgatacgc tccgcgcttt cgatgatctg gtcgagaggc gatcttagaa
      841 cttcgtcaag cgccagatcg aacgattcgc gaccgggctc gcgccgctgg ggcgcgcggc
      901 tgtccgcctc gacccagccg cgaaatccgg caaaatgtcc gtccgcgccg gtaacgacct
      961 cgccgcttat tatgatcgat cgcgattcga tcgctcggct ccgcgcgcgc tgtccggtga
     1021 agttgcgccg cgccgcgaga gcactgatca gcggcatttc gccggcttcg tcttcgtcaa
     1081 gtcgaacgat ccttgtaagc ggctggcccg cgaccgcatc gggattgacg ccaagaagct
     1141 cggcaagtcc tgaggacagg gaaaggattc gcaactcctc gtccgcggcc cactcgttgc
     1201 gcatttcttc cgcaccagct tcgccccccc cgcccaatat cgcggcgagc cttggaggcg
     1261 cggcgacgtg ctcggtccac ccttcaagag cgaggtccac ctcttcgccc tgtggagtcg
     1321 cccgcaccca aagctcgatg tcatgctcgg ccgaggcggc cattgccggt cgcgaaaccg
     1381 ccgttcgaag gcgccgcgca agctcagcga cagccgcgat ctggggcagt gcaagcagtt
     1441 ctccaaggcg cgatccagcc tcacgctgaa gcgtctcgag ttccggatcg gcggaaatca
     1501 ggcgacccgc ggcatcaaga cgcccgagca cgggacgagg ggtggaagga gcgctagcca
     1561 cgcgacgggc ctagttgctc aagcgcggct ttgtaggagg gcgcagtcag aagccatgcg
     1621 cgtacgccct gaacttcggt atcaggcata ttctcgaaca ttgcgagggc agcgcccgca
     1681 tcgtcgacgc ccagaagatc gccgatgctt ccaagcaatc ctgccgctag gttccgggac
     1741 gattgactga tccgaagcaa ggtcatcaat cgcttcggat cagcagaaag gagctcatca
     1801 atcgaagctt ctcccgagag accgccgcga cgcgataata tctcggcaac aaacgccacc
     1861 tctccctcgt tcgccgcggc gacgacaagt tcgtcggtga gagttccggt cgcttcgagg
     1921 acatcgacaa gcgctgcgat gagtgcattg atccctcgcc gttcgtcgcg gtgctcgaga
     1981 acctgtcgcg atgcgtgcgt caattcgaga tcggcgccgg tcagtccctc gcgttcggcg
     2041 agttcggcgc ggagcgccgc ggcgatcgca tggacgagtg actcggcaga cgtttgggca
     2101 agatcgtcga aaaggatgag gtactgaccg aagcggtcac gacggcgacc ctttgcgaga
     2161 ataaccgcca ttgccgccgc ggccacgccg ccatcgttgt cgctgacgaa accctgcagg
     2221 acgcgcgctt cgcggcgtgc gcttcgtgcg cgagcagccg tcgcaatcct ttcttcatcg
     2281 gcccgacgaa ggagaagagc catcaaatgc ggctcatcga caagtttcga actcgtcagc
     2341 cgcgcaatga gcgaggcatc accatcgtca ttcgccggaa gccggccgcg cggaagtgcc
     2401 gcgcgaatgg cgctcgccac gtctctgatg aggccgcgca gcatcgcggt catcagtgct
     2461 cgctcctgct ccgtcaggcg ctgtccagga tcgaggaaga agtcttgtcg tacggcttgc
     2521 agtcgtccag taccggcggc gcgcgcaggc gcactcccgt cagctgccat tgcagcgata
     2581 ggccattctt ccggcatcat cttatccgat ttatccgatt tcagttaact tgccgtcaac
     2641 tggtgcgagg tgccggaccc tctggaacag gaaaaacgac accgctgcgt aaagcagcat
     2701 ggcgaccaaa taagcggtcc actggccagc gatcgcaaac ggcaaagcca ggaggaccgc
     2761 gttccggcgc gaaagaagcc acatctcgtc agcaggagga aatgccgaag attcgatccg
     2821 catcgcctcg gcaaacgcac aagcggaggc ggcgctcacc agcgcacccc aaccggtgcc
     2881 gtggcgggtc tcccaccagc cgatcgcaag caaggcaacc cctgccgccg gccacagcgc
     2941 cgatcgggtc cagaggcgcg taggaagcgg cctcagcctc agcgttgcaa ggcgctcggc
     3001 aagaagatcg agcggtgttg aaaccagcag caggaccatt ccggcgccga gccatcctct
     3061 cgaaaagcag attgcccccg ctaaggtaag tccgagtgcc atccagagaa acgaaccggg
     3121 ccgaattgca gtacccatca ggcgctcggt cgcgaaatcc tcgaccggtg gcagaaaata
     3181 acggctcgcc gcgtcatcgc gattagcgcg cgaggaccga acgagatgac gctgaaagct
     3241 cgcgagatcc tcggctccgt tgacgagcaa cggctcgcca cccgtgtcgg ccgcgggcac
     3301 gagccgcgcg ccttcctgga tcgaccgtcg gagcaaggtc gattgcaagt cccagtcgcc
     3361 cagaatggcc gctgtcgagc ccaacaacgt cgcgtcgaca agtgcgactc cggcccagcg
     3421 cgactgcgca tcaattcgct cgaaacgctc atgcagttca tcgtcgccga ccgttgcgac
     3481 gagatttacg ggcgattgcg aaacgctcat gaggagggat agtggcggcg ctacgccgtc
     3541 gccgatcaga agaatcatcg agcccgcctc gaaacggctt agagcctcgt tgacgtcact
     3601 cacgggaacg atgctgatcc catcgcttct tagtcgttcg aaagtctcct gtagtccctg
     3661 cggaacgcgc tccacgacga caacgattgg cgcagctccc gcggcggacg cacagcgcac
     3721 ctgataatcg aggagcgttc gaccggcgag cgggaggagc gctcttagac ctcctccgtc
     3781 gtcttcctgg taagccccga tcagggcacc gatcgccatt gccgttgttg ccttccccgc
     3841 tatcgcgcaa ctactctctc taatcgcttt cgcgcttcgt caaagatgat aaactgcccg
     3901 tcgagatgac acctactccc aagcgcgccg aacacctgcc gccgctcgac gacgcggcag
     3961 aatcaagcaa tttgctgtcg agcagcatcg actttgtcga gccggcgttc gaccatcgcg
     4021 agtggcagga acaatcggcg caagaacgcg gcgccggcgg gcgtcaggtg ctgggcgttg
     4081 cgctgtgcat ttttgcggcc ctgtggcttg cctatgccgg ctgggcggcg ggccgttcgc
     4141 tcgacagcca gtcgctttca tcgccgcaac tcgcgcaatg gctcgcaatc gctgcgggtc
     4201 cgcttgccct cctcggcctc gtctggctga tcttcggtcg caccaggcgc aaggaagccg
     4261 aacgatttac gcgatcggtc gtgacaatgc gggcggaggc gcgcagcctc gaagcacttc
     4321 tccaggtgct cgcgcagcgg atcgatgaaa gccgctctca actcacgagt atttctcagc
     4381 agctgatgga tcttggcgat gagacgaccg tcaagctcgg gaatatcacc cgcgagctcg
     4441 acggaagcag cgaaaaactc aaagtccagg gtctcgcgct cgatcgagcc gccgactccg
     4501 cccggaatga cgtagcggca ctccttgatg atcttccaag agcggagcag cgcgcccgcg
     4561 cagtggccga agagttgcgc tcggtcagca gccaatccgc ggaaaaaaca gcattacttg
     4621 cccaagaggt cggcaatata ggcgaacaag cgcgaaccgc cgagcagctg attgcgcaag
     4681 cgacggacaa tattgccgct cgccttgcgg agatcgagga cgccggagca acggccgctg
     4741 cgcaagtgcg caatgccgaa aatgcctatg cgaacacgct cgacactcta ctggtgcgta
     4801 ctgccgaagc gctcgagcaa atccgctcgg gaatcgacgt tcagggagcg gcggtgtcgg
     4861 cgctcgttgc gcaagcgtcg gcagggatcg gcaaggccgg atcggacgcg gccgaatcgc
     4921 tcgcatcgaa ccttagccag gcgacctact cactcgaggg actttccacg cgcgttgctg
     4981 aacaggatcg agcgtcgcag cacatgattg cggagatcga acgaggtctg gcgctcatcg
     5041 accagcgctt taccgagctc gccgcgaacg gggatgagcg agccaatcgt tttctcgggt
     5101 cactcagccg cgcgcgcacc gagctcgaca cgcttgccgc ccaggccagc agccaggacg
     5161 gcgcgatcag ctcgctcgcc gagcggacca gcgcgcttcg cgacagcatt gaacaactcg
     5221 caacggagat ccgggacggg gtcggcgtcg caatcggcga agcgcagggc ggcgccgacc
     5281 gtctcgccga aaccgcagaa gcggccaagc cttcgatcgg ctggcttcgc gatgcaacga
     5341 gtgaagccaa tgacaagctc gcggcaaccg ctgcccagat cgcgcagcag cgggagcatt
     5401 tttccgagct ccttgccggt ctcgacagcg gcgttgagga agcgcagtca aagcttgccg
     5461 agttcgcctc gagcctggtc caggtcgaac gtgaagcgac aagcctcagc aacgagactg
     5521 gtccagcgct ggtggcatca ctcgtccagg tcaaggag
//
LOCUS       DASRBJ010000095         3007 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_517969,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000095 DASRBJ010000000
VERSION     DASRBJ010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_517969"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..652
                     /locus_tag="VE968_02740"
     CDS             <1..652
                     /locus_tag="VE968_02740"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HZU50774.1"
                     /translation="IGVQFSVEGRDLAGAVQDAMAKVSNKVRLPQGYRLDWGGEYSEY
                     TASRTQLMSIVPLTLLLIFLLLFMLYKNFKFPAITLAGVLLSAPVGGILALWLSGTAF
                     SVSSGIGFLALFGVSVQTALVYISYVNELRIAGTPLREAIREGAILRLRPIMMTALVA
                     ALGLLPAALATGVGTDTQRPFAVVIVGGLVACLLIIIFLMPALYTLVAREGDRLEV"
     gene            complement(737..1231)
                     /locus_tag="VE968_02745"
     CDS             complement(737..1231)
                     /locus_tag="VE968_02745"
                     /inference="COORDINATES: protein motif:HMM:NF025710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4402 domain-containing protein"
                     /protein_id="HZU50775.1"
                     /translation="MRCLAALAIWASPTLASAAAPLAQPTAHVVVLLPLTVTKLQDMD
                     FGILSTTGAGTAVLDPNTDALTTTGPVSSLGGSPHCAQFAGSAGSASVVNIKAPTGSI
                     TLTRVGGTETMTVSNFTIQGQSKRALAKAASFTFRVGGTLSVAAGQVEGLYVGTFSVT
                     VQYP"
     gene            complement(1277..1786)
                     /locus_tag="VE968_02750"
     CDS             complement(1277..1786)
                     /locus_tag="VE968_02750"
                     /inference="COORDINATES: protein motif:HMM:NF025710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4402 domain-containing protein"
                     /protein_id="HZU50776.1"
                     /translation="MKKLIPAVAAAALTMLVAAPGQAASPATQATASAKIYRPLTIAA
                     TQNLDFGTIVLSGAGTWSGETVSIDQTGALTCGSAGNVTCSGSPQAAKYHLVGTNNAV
                     VTISSPGFNLTGPGTLAFTPNAPTTVNLGAAGSTTGFDFGVGGSITLASSTPDGVYTG
                     TFAVTANYQ"
     gene            complement(1936..2445)
                     /locus_tag="VE968_02755"
     CDS             complement(1936..2445)
                     /locus_tag="VE968_02755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043169 - cation binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HZU50777.1"
                     /translation="MDITQLILDDHAEQRRLFAVLDEIEPQNIGALQATWNHLRALLD
                     AHALAEERFFYPDLLKIGRGADGDSAKEETRDAIKDHNEIRDTAAKVDEQRPGSPGWR
                     QAVAAVNRANGDHMAEEERQGLTDFRRTAGLELRHRLAVQFLQFRMEHLLGVKPVDRD
                     VDAYVRENS"
     gene            2621..>3007
                     /locus_tag="VE968_02760"
     CDS             2621..>3007
                     /locus_tag="VE968_02760"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZU50778.1"
                     /translation="MITRPTQPGPSLRPAAAIDRASAAHRNGNVLVARQLLQERIARN
                     PQDADALAKLAEIALAQKSVEEATVLLQRAVSVDPSPHRRVALIVHLQRSGEPAMALA
                     EIECLPRSVRRQSRIKEVEATVLSSLG"
BASE COUNT          580 a          914 c          874 g          639 t
ORIGIN      
        1 catcggcgtg caattctcgg tcgagggccg cgaccttgcc ggcgccgtcc aggacgcgat
       61 ggcaaaagta tcgaacaagg tgcggctgcc gcagggatat cgtctcgact ggggtggcga
      121 atatagcgaa tataccgctt cacgcaccca gctgatgagc atcgtgcctc taacgttgct
      181 cctaatcttc cttttgctct tcatgcttta caagaacttc aagtttcccg cgatcacgct
      241 tgccggcgtc ctactctctg cacccgtcgg cggtattctt gcactgtggc tgagcggcac
      301 tgcattttcg gtctcctccg ggatcggctt tctcgccttg ttcggcgtct cggtgcagac
      361 cgcgctcgtc tacatatcct atgtcaacga actccggatt gctggaacgc cgcttcgcga
      421 agcaattcgc gagggcgcaa tcctgcgcct ccggccaatc atgatgacgg cgctcgttgc
      481 agcgctcggc ctcctgcctg cagcgctcgc gaccggcgtt ggcacggata cgcagcggcc
      541 ctttgcagtg gtcattgtcg gcggcctcgt cgcgtgcctc ctcatcatca ttttcctgat
      601 gccagcgctc tacacattag tcgcacgcga gggtgatcgg ctcgaggttt aggacgtcgc
      661 gttgaaacga ttgtccgcca ttcccgcgga tcaagcgccg tcaaatcttt gctgcaaaaa
      721 gcgcgtggcc aacggttcag ggatattgaa cggttacgct gaaggtaccg acgtaaagtc
      781 cttcgacttg gcccgccgct accgacagcg ttccaccaac gcgaaaggtg aaacttgctg
      841 ccttcgcgag agcgcgcttg ctctgcccct ggatggtgaa gttcgagacg gtcatggtct
      901 cggttccgcc aacccttgtg agggtgatcg aacccgtggg cgccttgatg ttcacgactg
      961 acgcgcttcc cgctgaaccg gcgaactgcg cacaatgagg cgagccaccc aggctggata
     1021 cgggtccggt ggtggtcagc gcatcggtgt ttggatcaag gaccgctgtt ccagcgcccg
     1081 tcgtgctcag tatgccgaaa tccatgtcct gcagcttcgt caccgtgagc ggcagaagca
     1141 caacgacatg tgccgtcggt tgagcgaggg gtgcggctgc acttgcgagt gtcggcgacg
     1201 cccagattgc aagcgccgcc aaacaccgca caatgctcca ggggaacatt ttgttgtccc
     1261 tctggacgcg caaatattac tgatagttcg cggttactgc gaacgtaccc gtataaaccc
     1321 cgtcaggcgt cgatgacgcg agcgtgatcg agccgcccac tccgaaatcg aagcccgtcg
     1381 tgctccccgc cgcgccgaga ttgacggtcg tcggtgcatt tggcgtgaag gcgagagtgc
     1441 cgggacccgt caggttgaac cccggcgagc tgatcgtcac aacggcgttg ttcgttccaa
     1501 cgagatgata tttcgcagcc tgtggtgagc ccgagcaagt gacatttccg gcactaccgc
     1561 aagtgagtgc acccgtctgg tcgatgctga cggtttcacc cgaccaggtg ccagcgccgc
     1621 taagcacgat ggtgccgaaa tcgaggttct gggtggcggc gatggtaagc gggcggtaaa
     1681 tctttgccga ggcagtagcc tgcgttgcag gcgatgctgc ctggccagga gccgccacaa
     1741 gcattgtaag cgcagcggcc gcgacggccg gaataagctt cttcatcttg aaatccccac
     1801 tagttcgacg atcctcgccg gcacagtcct gcagacgcga tcgtgccgtg gttaactcaa
     1861 gacagctttc ttcttcgctc atcgtcacgg ttaatggcac gataaccaat tgcccgtgac
     1921 gggcgccgca acatttcagc tattctcccg cacgtaagcg tctacgtcgc gatcgactgg
     1981 ctttacgccg aggagatgct ccatgcggaa ttgcaagaac tgcacggcga gcctgtgtcg
     2041 gagctcaagc ccggctgtcc tccgaaaatc ggtaagcccc tggcgctctt cttcggccat
     2101 gtgatcgcca tttgcgcggt ttaccgccgc gaccgcttgc cgccatccag gtgaacccgg
     2161 ccgctgttca tcgacctttg cggcagtgtc acggatctcg ttgtgatcct tgatcgcgtc
     2221 gcgcgtttct tccttcgcgg aatccccgtc ggcgccgcga ccgatcttga gcaaatctgg
     2281 atagaagaag cgctcttcag cgagcgcatg cgcgtcgagc agcgctcgaa gatgattcca
     2341 ggttgcttgc aacgcgccaa tgttctgagg ttcgatttcg tcgagaaccg caaacagtcg
     2401 ccgttgttcg gcatggtcgt cgagaatgag ttgcgtaatg tccattgata gctccgccgc
     2461 ctcgggatcg atgcttgcct aacgaccgac aacgacaaat tgcatcacgg ttgatgatgc
     2521 gaacccaagt ttcgagtata agccttcccc gacatttgaa ccgaagagaa gagttggacg
     2581 atgcacactc ttcgtgggga ctggaggggc gaaggcggcc gtgatcaccc gacctactca
     2641 gccgggcccc tcacttcgac ccgctgccgc gatcgatcgt gcgtcggcag ctcatcggaa
     2701 tggcaatgtc cttgtcgcgc gccagctgct tcaggaacga atagcgagaa atcctcagga
     2761 tgccgacgca ttggcgaaac tcgcggaaat cgctttagcc cagaagtccg tcgaagaggc
     2821 aacggtgctt ctgcaaagag ccgtttcagt cgacccctca cctcaccgca gggtcgccct
     2881 catcgtgcac ctccaaaggt ccggcgagcc tgcaatggcg ctcgcggaga tcgaatgcct
     2941 tccaagatcc gttcgcaggc aaagcaggat caaggaggtc gaggcaacgg tccttagcag
     3001 ccttgga
//
LOCUS       DASRBJ010000096         3455 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_216607,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000096 DASRBJ010000000
VERSION     DASRBJ010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3455
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216607"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..674
                     /gene="hemB"
                     /locus_tag="VE968_02765"
     CDS             <1..674
                     /gene="hemB"
                     /locus_tag="VE968_02765"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HZU50779.1"
                     /translation="KAIKDAAPDVGVLTDVALDPYTAHGHDGILDRSGNVLNDETVEI
                     LVQQSLVQAAAGADIIAPSDMMDGRVGAIRDALEREGHQNVAIMAYAAKYASAFYGPF
                     RDAVGSRGRLKGDKRGYQMDPANFEEAIREVELDLAEGADFVMVKPGLPYLDVVARVK
                     DAFGVPTFAYQVSGEYAMIEHAAAAGAGERDALILETLLAFKRAGASGVLTYHAVDAA
                     RLLAA"
     gene            671..2110
                     /locus_tag="VE968_02770"
     CDS             671..2110
                     /locus_tag="VE968_02770"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HZU50780.1"
                     /translation="MIEQLRADIEHLRAEATALEPDHTERRQLGTEALDHALAFLEQV
                     ETAPSLRPACEALSERLEPEFTEEGRDLSSVLAYVDACIERPGIATTSPRFMAYVPGG
                     GLFHSALGDMLAAVSNKYAGFAPAAPGAVRIENACTAWLASVIGYPPSSAGTLTSGGS
                     VANLTAIVAAREARDADGGGAVYLTRFAHHCVEKALHIAGRSRSPRRLVATDESYCMS
                     LDALEQALEDDRRNGVRPWLVVASAGTVDTGAIDPLPEIAELCHRYGAWLHVDGAYGG
                     LFCLCDEGRARVRSIDQADSVALDPHKTLFLPYGTGAVLVRDGKHLFDAFSASADYIQ
                     PFTDTDVGPSPADLSPELTRHFRAMRLWLPLQIAGIAAFRAAQSEKLALARYFHARLS
                     QLEGFDPGPEPQLSIVAFRYLPKNADVDEFNEKLIRHIQQEGRVMLSGTRVDGSFRLR
                     CAILCFRTHLEHVDEVIDALVRGVEALGG"
     gene            2103..2699
                     /locus_tag="VE968_02775"
     CDS             2103..2699
                     /locus_tag="VE968_02775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014074421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HZU50781.1"
                     /translation="MVKIVAETERLRLRTWNDDDEFRFFEVMNTPAVMRWLGGKQTAE
                     EWSAGYQRLRRYQRDYGFTFWIVERKADRQILGFCGLKRANAPGADALAGEVEVGWRL
                     REDAWGRGYAKEAAIASLDLAFGRFGARQVVAVTAAGNAPSQGLMKRLGMQRRCELDF
                     VDQRFAVDHDVNPQVVFTIEATEWPVARELALDSSRRS"
     gene            complement(2696..3085)
                     /locus_tag="VE968_02780"
     CDS             complement(2696..3085)
                     /locus_tag="VE968_02780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50782.1"
                     /translation="MPVLRPTNDRPVAAAFAAKIAAVLREAQTGDVAFENAISSAERL
                     ATGAGAPQSETWIVAQEALTAAIAARRPTATALGDIDELGATALQVQGGLAPSDLAAL
                     DRAAAEVASINEREAQRITAIQKRLGD"
     gene            complement(3217..3293)
                     /locus_tag="VE968_02785"
     tRNA            complement(3217..3293)
                     /locus_tag="VE968_02785"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3257..3259),aa:Arg,seq:acg)
BASE COUNT          643 a         1016 c         1119 g          677 t
ORIGIN      
        1 tcaaggcaat caaggatgca gcgccggacg ttggcgtcct caccgatgtc gcgctggacc
       61 cctataccgc gcatggccac gacggcattc tcgaccgatc cggtaatgtt ctcaacgatg
      121 aaaccgtaga gattctcgtg caacagtctc tcgtccaagc agcagcggga gccgacataa
      181 tcgctccgtc cgacatgatg gacggccgag tcggcgccat tcgcgacgcg ctcgaacgtg
      241 aagggcacca gaacgtcgcg atcatggcct atgcggcgaa atatgcctcg gccttttacg
      301 gaccattccg cgatgcggtg ggttcgcgcg gtcgcctcaa gggcgacaag cgcggctacc
      361 agatggaccc ggcaaacttt gaggaagcaa tccgcgaagt cgaactcgac cttgcggagg
      421 gggctgactt cgtgatggtg aaaccgggcc tgccgtacct cgacgtcgtc gcgcgggtta
      481 aggacgcatt cggcgtgccg acgttcgcct atcaggtgag cggcgaatat gcgatgatcg
      541 agcacgctgc cgcagccggc gccggcgaac gcgacgcgct aattttagaa accctgctgg
      601 cgttcaagcg agcgggggca agcggcgtac ttacctatca tgccgttgac gctgcgcgct
      661 tgcttgccgc atgattgagc aacttcgtgc ggatattgag cacttgcgcg ccgaggcaac
      721 cgcgctcgaa ccggaccaca ccgagcggcg gcagcttgga acggaggcac tcgaccacgc
      781 actcgcattc ctcgagcaag tcgaaacggc gccaagcctg cggcccgctt gcgaagcgct
      841 cagcgaacgg ctcgagccgg aattcaccga ggagggacgc gacctgtcgt cggtccttgc
      901 ttatgttgac gcttgcatcg agcgacccgg catcgctacg acctcgcctc ggttcatggc
      961 ctatgtacca ggcggcggcc tgttccactc tgcgcttggc gacatgcttg cggcagtatc
     1021 gaacaaatat gcggggtttg ccccggcagc tcctggtgcg gtgcgcatcg agaatgcctg
     1081 cactgcttgg ctggcgagcg taattggcta cccaccgtcc tcggcaggaa ctctgacgtc
     1141 cggcgggagc gttgccaacc tcacggcaat tgtcgcggca agagaagctc gtgacgcgga
     1201 cggcggcggt gccgtctatt tgacgcgctt tgctcatcat tgcgtcgaga aggcgctgca
     1261 cattgcgggc cggagccgtt cgccccgtcg ccttgtcgcg accgacgagt cctattgcat
     1321 gtcgctcgac gctctggagc aggcccttga agacgatcgg cgcaatggtg tccggccatg
     1381 gctcgtggtg gcatcggccg gaaccgttga caccggtgca atcgatccgc tgcccgagat
     1441 cgctgaactg tgccatcgct atggcgcgtg gcttcatgtc gatggtgcct acgggggctt
     1501 gttctgcctg tgcgatgaag gacgagcgcg tgtgcgcagc atcgatcagg ccgacagcgt
     1561 cgcgcttgac cctcacaaga ccctgttcct tccgtacggg accggcgcgg tgcttgtacg
     1621 agacggcaag cacctcttcg atgctttcag tgcaagcgcc gactacatcc aacctttcac
     1681 ggacacggat gttggaccgt cacccgctga tttgtcgccc gagctcacgc gccatttccg
     1741 ggcaatgcgc ctgtggctcc cgttgcagat cgctggaatt gcagcgttcc gggcggcgca
     1801 aagcgaaaag cttgcacttg cccgttactt tcacgcgcga ttgtcgcagc tcgagggctt
     1861 cgatccgggt ccagaaccgc agttgtcaat cgttgccttc cgatatctcc cgaagaacgc
     1921 cgatgtcgat gagttcaatg aaaagttgat ccgccacatt cagcaggagg gccgggtcat
     1981 gctgagtgga acgcgcgttg atggcagctt ccgtctgcgc tgtgcgatcc tctgtttccg
     2041 aacgcatctc gagcatgtcg acgaggtcat tgatgcgctg gtgcgcgggg tggaggcact
     2101 tggtggttaa gatcgtcgcg gagacggagc gccttcgcct gcgaacgtgg aacgacgacg
     2161 acgaattccg cttcttcgaa gtgatgaaca cgcccgcggt catgcgatgg ctgggaggca
     2221 agcagacggc agaagagtgg agcgccggtt atcagcggct acgccgctat cagcgcgatt
     2281 acggtttcac cttctggatt gtggaacgca aggcggaccg ccagatcctc ggcttttgcg
     2341 ggctcaagcg tgccaatgca ccaggtgcag atgcattggc tggcgaggtg gaggtcggct
     2401 ggcggcttag agaggacgcg tggggtaggg gttatgcaaa ggaagcagcg attgcatcgc
     2461 tcgatctcgc atttggtcgc tttggtgctc gtcaggtcgt tgccgtcacg gcggccggaa
     2521 atgcaccaag tcagggattg atgaaacgcc tcggcatgca gcgtcgctgc gaactcgatt
     2581 tcgtcgatca gcggttcgcg gtggatcatg acgtcaaccc gcaggtcgtg tttacaatcg
     2641 aagcgaccga gtggcctgta gcgagagaat tggccttgga ttcatctcgg aggagttagt
     2701 ctccgagccg cttctggatt gccgtgatgc gttgagcttc tctctcattg attgatgcca
     2761 cttcagcggc agcgcggtcc agcgcggcaa gatcgcttgg cgcaaggccc ccctggacct
     2821 gaagcgccgt cgccccgagt tcgtcgatgt cgccgagtgc cgttgcggtt ggccgacgcg
     2881 cggcaatcgc agcggtaagc gcctcctgag cgacaatcca cgtctcgctc tgaggagctc
     2941 cggcaccagt agcgagccgt tccgccgagg agattgcgtt ctcgaaggcc acatcgccgg
     3001 tttgcgcctc gcgcaaaacg gcagcgatct tggcagcgaa cgccgctgca accggccggt
     3061 cgttggttgg gcgcaatacc ggcactcttg ggtcgatcag ttctgccgct cgcggttgta
     3121 gtgacggata tggaccacct ggcgacgagc aggccgcggg caggaggaag aatgggatca
     3181 accgctttcg catcgctggc ggctctaaaa cgaaaatggc gcgcccgaaa ggattcgaac
     3241 ctctgacccc cagattcgta gtctggtgct ctatccagct gagctacggg cgcgcggtgc
     3301 cgggaaacgg caggcgggcg acataggagg aggcgcgtgc cggcgcaacc ctcgaagggt
     3361 gactcggtga tctgcgcggg tcatgagtga agaaagatcg atcgttaagc ggcgatttgg
     3421 cgctacctca atgaaggcga tcggggaagc gccgt
//
LOCUS       DASRBJ010000097         4335 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_216760,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000097 DASRBJ010000000
VERSION     DASRBJ010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4335)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4335
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216760"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..883)
                     /gene="hrcA"
                     /locus_tag="VE968_02790"
     CDS             complement(<1..883)
                     /gene="hrcA"
                     /locus_tag="VE968_02790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HZU50783.1"
                     /translation="MAQPIGELTDRMREIFGHVVEAYLERGLPIGSKALVGNVSLSPA
                     SIRGVMQELEERGLLTHPHTSAGRIPTETGLRLFVDGIMQAAAPDPRERREIERQIVR
                     DQPIENALAAASAALSGLSQAAGVVLAPKRELRIKQLNFVSLNETRALAILVGADGSV
                     ENRIVSLDGSTTAATLGEVSNFINGRLAGLTLAEAEMRLRAEIRDHKEVIDSAAAELI
                     ASGLAAWSQDNARRPVLIVRGQANLIDATAAEDLERVRRLLDELEEVQEIAHLLESAR
                     DAPGCRIFIGSENRMFAL"
     gene            959..1675
                     /gene="rph"
                     /locus_tag="VE968_02795"
     CDS             959..1675
                     /gene="rph"
                     /locus_tag="VE968_02795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004549 - tRNA-specific ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HZU50784.1"
                     /translation="MRPSGRAPDQMRELKFEPGFTRHAEGSCLVSFGDTRVLCTASVE
                     EKIPPFLRGKGQGWVTAEYGMLPRATHTRGNREAAKGKQSGRTQEVQRLIGRSLRAVV
                     DLKSLGERQLIVDCDVLQADGGTRTASISGGWVAMRLAVDQLLGSKAIASDAIRTQVA
                     AVSCGFHQGTSVLDLDYEEDSQAGCDGNFVLTADGAIVEAQVTAEGECYDEEGLLRLL
                     RLARIGCSEIFQAQLKAVGR"
     gene            1672..2283
                     /gene="rdgB"
                     /locus_tag="VE968_02800"
     CDS             1672..2283
                     /gene="rdgB"
                     /locus_tag="VE968_02800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004210934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HZU50785.1"
                     /translation="MRPVGDRLVIATHNPGKLREMTALVEPLGIACVGAAELGLPEPE
                     EIGVTFADNADLKAREAADLSGLPALADDSGLCVDVLHGRPGIFSARWAEDENGNREW
                     MRAMEKVWREIEAIGPDGDPAAHFACSLAIAWPNDGQTATFDGRIDGILVWPPRGDKG
                     FGYDPMFVPVGYDETFGELDPGLKHEISHRADAFRKLVAALNE"
     gene            2280..3443
                     /gene="hemW"
                     /locus_tag="VE968_02805"
     CDS             2280..3443
                     /gene="hemW"
                     /locus_tag="VE968_02805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HZU50786.1"
                     /translation="MSGDPLALYIHWPFCVSKCPYCDFNSHVRSSVDAEAWKQGLLAD
                     LRHEARLLSGRRLSSIFFGGGTPSLMDPSTVEALIRAAAAEWTFTDNVEVTLEANPNS
                     VEAARFADLAAAGVNRLSLGVQSLDDDALSFLGRAHSAREARQALEIAQSAFARVSFD
                     LIYGLPGDTESSWSDALSRALSLGTTHLSLYQLTIEPGTRFASMVSKKQFQPLDSDTA
                     AKLYELTDAMTSAAGLPLYEISNYARRGDESRHNLTYWRYGEYAGIGPGGHGRRLGMR
                     TVRHKKPENFLSAVLRNGHGIAEEAKLSPLEAADEALVMGLRLSEGIDARAIASRYGL
                     ATIVDWQCVDDLVRSGHLKRAGTRIALTPAGRLLLDYILGQIVAAPTRILAVG"
     gene            complement(3421..3849)
                     /locus_tag="VE968_02810"
     CDS             complement(3421..3849)
                     /locus_tag="VE968_02810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50787.1"
                     /translation="MIILLAASAIYMSGVQAAIAAPTDAFRGCLRDAASKAKSEKVTG
                     DGIEAYLKKSCTAQMGTLTDALVAFRMKNGMTRKAAAADAAMTVDDYVSTPADNYKFM
                     TNMEAKQAPAAAAAPAAPSGPAPAKAVVTPAAAPTQPPKS"
     gene            3930..>4335
                     /locus_tag="VE968_02815"
     CDS             3930..>4335
                     /locus_tag="VE968_02815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal RNA small subunit methyltransferase I"
                     /protein_id="HZU50788.1"
                     /translation="MKNMLQPGLHIVATPIGNLGDLSPRAAETLRSADRILAEDTRVT
                     GKLLAHIGAKVPMSRYDDHSSEAERERIVAELHDKAIALVSDAGTPLISDPGYKLVRS
                     ARAAGCMVYTVPGPSAVIASLTLSGLPTDRFLF"
BASE COUNT          843 a         1278 c         1329 g          885 t
ORIGIN      
        1 acaaggcaaa catccggttc tcggagccaa tgaatatccg gcagcctggc gcatcacgtg
       61 cgctttcaag caagtgtgcg atctcctgga cttcctcaag ttcatcaagg aggcgccgaa
      121 cgcgctcgag atcttcggcg gctgtcgcat caatgagatt tgcttgaccg cgaacaataa
      181 ggaccggccg ccgcgcatta tcctggctcc acgcggcgag gcccgatgca atcaattctg
      241 ctgcagccga atcgattacc tccttgtggt cccggatctc ggcacgcagt cgcatctcgg
      301 cttcagcaag agtcagtcca gcgagccgtc cattgatgaa gttgctgact tcacccaagg
      361 tcgcggcagt cgtactgcca tcgagcgaga cgatgcggtt ctcgacagaa ccatccgcac
      421 cgacaagaat tgcaagtgcg cgagtctcgt tgagggaaac gaagttgagc tgcttgatgc
      481 gcagttcgcg tttgggagca aggacaacgc cagcggcctg gctgagcccc gaaagcgctg
      541 cagaagcggc ggcaagcgca ttctcaattg gttgatcgcg aacaatttgc cgctctatct
      601 cgcgccgttc ccgcgggtcc ggcgctgcgg cctgcattat accgtcgacg aacagccgaa
      661 gcccggtctc cgtcgggatc ctgcccgccg aggtatgcgg gtgggtcagc aatccgcgtt
      721 cttcgagctc ttgcatgacg ccgcggatcg acgctggaga aaggctgaca ttgccaacaa
      781 gtgccttgga tccgatcgga aggccgcgct cgagatacgc ttcgacgacg tgcccgaaga
      841 tctcgcgcat ccggtcggta agttccccga ttggttgtgc catgtcactc catctaggat
      901 taggaccgtt gccggtctag ggaccgccgc ttacgacttt gaggagactt cgatggccat
      961 gcgcccttcc ggacgcgcgc ccgaccagat gcgagagttg aagttcgagc cgggcttcac
     1021 ccgccatgcc gagggctcat gccttgtgag ctttggcgac acgcgcgtgc tttgcacggc
     1081 aagtgtcgag gaaaagatcc cgccgttcct tcggggaaag gggcaggggt gggtcaccgc
     1141 cgaatatgga atgcttcccc gagcgaccca cacccgcggc aatcgcgagg ctgccaaggg
     1201 caagcagtcc gggagaaccc aggaagtcca gcggctgatt ggtcggtcgc ttcgggccgt
     1261 ggttgacctc aagtccctcg gtgagcgcca gctgatcgtc gactgcgatg ttctgcaggc
     1321 ggacgggggg acgcgcacgg cctcaatatc ggggggctgg gtcgcaatgc gccttgccgt
     1381 cgaccagcta cttggctcca aagcgatcgc ttccgatgcg attagaaccc aggtcgccgc
     1441 cgtgagctgc ggcttccatc agggtacttc ggtactcgac ctcgattatg aagaggatag
     1501 ccaggcgggc tgcgacggca acttcgtact gaccgcggat ggcgccatcg tcgaagcaca
     1561 ggtgaccgcc gagggagagt gttacgatga ggagggactg ttgcgccttc ttcgccttgc
     1621 aaggatcggg tgctcggaga ttttccaggc tcagctgaag gcagtcggcc ggtgaggccg
     1681 gtcggcgacc ggctggtcat tgccacccac aaccccggaa aactaaggga gatgacagca
     1741 ctcgtcgaac cccttggaat cgcctgcgtt ggcgcggccg aattgggcct cccggaaccc
     1801 gaagagatcg gtgtcacctt cgcggacaat gccgatctca aggcgcgaga ggcggccgat
     1861 ctcagcggtt tgcccgcgct tgccgacgat agtgggttgt gtgtcgatgt gctccatggg
     1921 cgccccggta ttttctcagc gcgatgggcc gaggacgaga atggcaatcg cgaatggatg
     1981 cgtgccatgg agaaggtctg gcgcgaaatt gaggcgatcg ggccggacgg cgatcccgcc
     2041 gcgcattttg cctgctcact ggcaatagct tggcccaatg acggccaaac ggcgacgttc
     2101 gacgggcgca tcgacgggat cttggtttgg cctccgagag gcgacaaggg ctttggctat
     2161 gacccaatgt tcgtgcccgt cggttacgac gagacttttg gcgagctcga tccaggtctc
     2221 aagcatgaga ttagtcatcg agccgacgca ttccgcaagc ttgtagcggc actgaacgaa
     2281 tgagcggaga cccgcttgca ctttacatcc actggccatt ttgtgtcagc aaatgcccct
     2341 attgtgattt caacagccac gttcgttcgt cggttgacgc ggaagcctgg aagcaaggct
     2401 tgcttgctga tcttcgtcat gaagcgcgcc tcctaagcgg ccgccgatta agctcgatct
     2461 tttttggtgg cggaacgccc tcgctcatgg acccgtccac tgtcgaggcc cttattcgag
     2521 cggcagcagc ggaatggacg tttacggaca acgtggaggt tacgctcgaa gcgaacccga
     2581 actccgtaga agccgctcgc tttgccgact tggctgctgc cggcgtcaat cgcctgtcgc
     2641 tcggagtcca aagccttgat gatgatgcac tgtcgtttct gggaagagca cattcggcaa
     2701 gggaagcacg tcaagcactt gagatcgcgc aatcggcctt tgcccgggtg agtttcgatc
     2761 tcatttatgg gctgcccgga gataccgaat cgagctggtc tgacgcgctt tctcgcgccc
     2821 tttctctcgg cacgacgcac ttgtcccttt accagctgac aatcgagccc ggtacgcgat
     2881 ttgcaagcat ggtttcaaag aagcaattcc agccactcga ctcggacacc gcggcaaagc
     2941 tctacgagct caccgacgcc atgacgtcgg cagcgggttt gccgctttac gagatcagca
     3001 attacgcgcg gcgcggcgac gaaagccggc ataatcttac ctattggcgg tacggcgaat
     3061 atgcggggat tgggcctggc ggccatggca gaaggctcgg catgcgaaca gtgaggcaca
     3121 agaaaccgga gaattttctc tcggcggttt tgcgcaatgg tcacggcatc gccgaggaag
     3181 cgaagctctc accgctggag gctgcagacg aagcgctggt gatgggcctt cgtctgagcg
     3241 agggcattga cgctcgggca attgccagcc gttacggact agcgacaatt gtcgattggc
     3301 agtgcgttga cgatcttgtc agatcgggac acctgaagcg cgctgggacg cgcattgcgc
     3361 ttactccggc cggcagattg ctgctcgact atattctcgg ccaaatcgtt gccgcgccaa
     3421 ctaggatttt ggcggttggg taggcgctgc agccggcgtt acgacggctt ttgcaggtgc
     3481 tggtccgctc ggagctgcag gcgccgctgc cgctgcaggg gcttgcttcg cctccatatt
     3541 tgtcatgaac ttgtagttgt cagcaggggt cgaaacatag tcgtcaaccg tcattgccgc
     3601 gtccgcggcg gcagccttgc gtgtcattcc gttcttcatt cggaacgcaa caagggcgtc
     3661 cgtcagcgtt cccatctgcg ccgtgcacga cttcttgagg tacgcctcaa tgccatcgcc
     3721 ggtcaccttt tcgcttttgg ccttggatgc ggcgtcccgc aaacaaccac ggaaggcatc
     3781 agtaggtgca gcgatcgcgg cctgaacgcc gctcatgtaa attgccgagg cagcaagtaa
     3841 tataatcatc gtgccatctc ccttgaccca atgaatgtcc gcaccctgac tctttttctc
     3901 ttcgattgga agaggttaat gcacggctga tgaagaacat gctgcaaccg gggctgcata
     3961 ttgtcgcaac accgatcggg aacctcggcg acctcagccc gcgtgccgcc gaaacgcttc
     4021 gaagcgccga tcgaatcctc gccgaggaca cgcgcgtcac cggcaagctc ctcgcgcaca
     4081 tcggggcgaa ggtgccgatg agccgctatg acgatcatag cagcgaggcc gagcgggagc
     4141 ggatcgttgc cgagcttcat gataaggcga tcgcgctcgt aagcgacgct ggaacaccgc
     4201 tcatctccga tcccggatac aaactcgtgc gctcggcaag ggctgccggc tgcatggtct
     4261 atacggtgcc tgggccttcg gcagtgatcg catccttgac gctttccggc ctgccaaccg
     4321 accgatttct cttcg
//
LOCUS       DASRBJ010000098         4792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_569779,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000098 DASRBJ010000000
VERSION     DASRBJ010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4792
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_569779"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2231)
                     /locus_tag="VE968_02820"
     CDS             complement(<1..2231)
                     /locus_tag="VE968_02820"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU50789.1"
                     /translation="MLYQELPRIDSTPLDRFGRWLGPVIAGAAAISIAVVLAVFGEFV
                     LAGAAALAALIAAVVLVRRRPKMDLALEALTVAPDYSIVGAALGASRDPMALTDKDGA
                     PLVINNAYQSRFGNCPPIEVASSDEARNGLELAQSMAWRDGAGCVAGVETKAGTSPVE
                     VERVGARGDLLLWRFPAPPAPDPLTIAVRRIESIVGERLSDGDVLAAVVDHKGTVLAA
                     NRLMVERALGDGKALRSVRFSELVEIVDDHRVRLIAEGEAAQPLHAVHLPADIGHENG
                     AGTFLLFDAGNSTSVAQSSNLQALLDILPIGLALVDRDGRFLTMNTAFRQAAGIKSSA
                     TPVYPGDLVVKEDKAAVADAVRRNSRGPAMSGDLAVRLANQSSDPVALTLAGLRGLGD
                     AAVLLLLKDNSEEAKLKRQVAQATKMQVVGQLAGGVAHDFNNILTAIIGHCDLMLMRH
                     TPGDSDYDDIQQIKSNSNRAAGLTRQLLAFSRQQTLRPQVLQLPDAVSEVSHLLKRLL
                     GETVELVVKHGRNLGPIRADPGQLEQVIINLAVNARDAMAAKGGGTLTIQTYPVKADQ
                     VAELGSDILPIADYSALSVSDTGTGIPPSVLSKIFEPFFTTKEVGKGTGLGLSTVYGI
                     VKQSGGFIFADSKVGEGTRFVIYLPVHHEEAAARRAKKSEKSKKDELWGSGTVLLVED
                     EPMVRSVAERALTRHGYTVITADNGEDALEILGRNEPIDLLISDVVMPGMDGPTMVRE
                     ARQ"
     gene            complement(2267..4309)
                     /locus_tag="VE968_02825"
     CDS             complement(2267..4309)
                     /locus_tag="VE968_02825"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010164247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13-type metalloendopeptidase"
                     /protein_id="HZU50790.1"
                     /translation="MAKLFAFALATSALAGTAMLAASEAPAAAQQAAPGRPQYGAFGF
                     DSSGMDTSIAPGDDFFGYANGTWDRNTQIPPDKARYGMFNVLDDLSKERTRTIIEEQA
                     KDPNSKIGNAYASFMDEPAIEAKGLAPLEPWLNEIKQTSSKGALTQLYAHADELGVGI
                     PFRMFVGQDRRASDRYALNVIQGGIGMPDRDYYLSNDPKLVETRNKYLQHLTNMLSLA
                     GEPNAAARASAIVALETKIAQAHWTRAESRDAEKTYNKLTLAEVRSLAPSFDFPALAR
                     DLGANVAYVVVAQPSAFKGISDIIGQTPLPVLKDQLLVRSLDHFAPYLPQRFDRENFA
                     FYGTVLSGTPQQEPRWRRGVNFTVDALGDDVSRLYVARYFPAETKAAADQLVHNLIAA
                     MNRRIDRLDWMSPATKAKAHAKLAAFTPKIGYPSRWRDMSGLVIRRDDLLGNAMRSAR
                     FEHAYEVGKLGGPIRRWEWGMTPMTINAYSNPTMVEIVFPAAILQPPFFDPHADAAVN
                     YGGIGAVIGHEMSHQFDDQGAKYDLHGNLVDWWTPGDSKEFHARLDKYERQIDSYEPL
                     PGMHVNGKLTMGENVADLAGLTVSHDAYLASLNGAPPPVVDGMTADQRFYLGWAQVWR
                     CKEREPALRQQLLTDPHSPCPVRTDVVRNMDPWYQAFGVKPGQKLYLAPTDRVRIW"
     gene            complement(4407..>4792)
                     /locus_tag="VE968_02830"
     CDS             complement(4407..>4792)
                     /locus_tag="VE968_02830"
                     /inference="COORDINATES: protein motif:HMM:NF021363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2062 domain-containing protein"
                     /protein_id="HZU50791.1"
                     /translation="FVAVIIPFMHTVIAALVAIPARANVAVAALFTLVVNPLTIPPLY
                     YAAYRIGSWELHHDAAIVDPADAERFSSELSRMLFWIHHASGSIAVGVLTIAMALGIV
                     GYLSSSFVWRLWCANRWRRRRRPIL"
BASE COUNT          970 a         1441 c         1456 g          925 t
ORIGIN      
        1 ctctggcgtg cctcgcgcac cattgtcggc ccgtccatgc cgggcatcac aacgtcgctg
       61 atgagcaggt caattggctc gttgcgccca agtatttcga gcgcatcctc gccgttatcg
      121 gcggtgatca cggtatagcc atggcgcgtt agtgcccttt cagcgacgct tcgtaccatg
      181 ggttcatctt caaccagaag gacggtcccg cttccccaaa gttcatcctt ctttgacttc
      241 tccgacttct tggcccgccg agcagccgct tcctcgtgat ggaccggcag gtaaatgacg
      301 aagcgagtgc cttcgccgac cttggagtcg gcgaaaatga agccgcccga ctgcttgacg
      361 atcccgtata ccgtcgaaag ccccaggccc gtgccctttc caacttcctt ggtagtgaag
      421 aatggttcga aaatcttgct cagcacgctc ggcggaatgc ctgtccccgt gtcgctgacc
      481 gaaagcgcgc tgtaatccgc aatcggcagg atatcagaac caagttcggc gacctggtcc
      541 gccttcacgg gataggtctg gatggtgagc gttcccccac cctttgctgc cattgcgtcg
      601 cgcgcgttca cggcaagatt gatgatgacc tgttcaagct gcccggggtc ggcacggatc
      661 gggccgaggt tgcgcccatg cttgacgacc agctcgaccg tctcaccaag caagcgcttc
      721 aggagatggg agacctcgga aacagcgtca ggaagttgaa ggacttgcgg gcgcagtgtc
      781 tgctggcgcg aaaatgccag caactggcgc gtgaggccgg cagcgcgatt cgaattggat
      841 ttgatttgct gaatgtcgtc ataatcgctg tcgcccggcg tgtggcgcat cagcatgaga
      901 tcgcagtgcc cgatgatcgc ggtaaggatg ttgttgaagt cgtgcgctac gccgccggca
      961 agctgcccaa ccacctgcat cttcgttgct tgagcaacct gccgcttgag cttggcttct
     1021 tcgctattgt ccttgagcaa caagagtacc gcagcgtcgc ctaggcctcg aagccccgca
     1081 agagtaagag cgacaggatc agaggattga ttggcgagac gcacggcaag atcgcccgac
     1141 atagccgggc cccgtgagtt cctgcggacc gcgtcggcga cggcggcctt gtcctccttg
     1201 acgacgaggt cgcctggata gactggcgtt gccgagctct tgatcccggc ggcctgccgg
     1261 aaggccgtgt tcatggtcaa gaagcggcca tcgcgatcaa ccagggcgag cccaatcggg
     1321 aggatatcga gcaacgcctg gaggttcgac gattgcgcga ccgatgtcga gtttccggca
     1381 tcgaacagaa ggaaggtacc ggcaccgttt tcgtgaccaa tgtcggcggg aaggtggacg
     1441 gcgtggagcg gctgcgcggc ctcgccttcc gctatcagcc gcacgcggtg atcatcgaca
     1501 atttccacga gctctgaaaa gcgaacggac cgaagcgcct tgccgtcgcc aagggcacgc
     1561 tcaaccatga gtcggttggc ggcaagaacg gttcctttgt gatcgacaac cgccgcaagg
     1621 acatcgccgt ccgacaggcg ctcaccgacg atgctctcaa tccttcggac ggcaatcgtc
     1681 agcggatcag gcgctggcgg cgcggggaaa cgccacagca agagatcgcc gcgagcgcca
     1741 acccgctcga cctcgaccgg cgaagttccc gcctttgtct ccactccagc gacgcatccc
     1801 gcaccatcgc gccaagccat ggactgggcg agttcgagcc cgtttcgagc ctcgtcagac
     1861 gatgcaactt cgatcggtgg gcaattgccg aagcgtgact ggtaggcatt gttgatgacg
     1921 agcggcgcac cgtccttgtc ggtcaacgcc attggatcgc ggcttgcgcc aagcgctgct
     1981 ccgacgattg aatagtccgg tgcaacggtc agcgcttcaa gagcgaggtc catcttgggc
     2041 cttcgccgaa caaggacgac ggcggcgatg agagcggcaa gcgcggccgc accagcgagg
     2101 acgaattcgc cgaagacggc aagcaccacg gcaatgctga tagcagcggc gccagcgatg
     2161 actgggccaa gccaccgccc gaaccggtcg agcggcgttg agtcgatgcg gggaagctcc
     2221 tggtacagca ttttgcttcc ccgcatccta acagctgctc agcatcctac cagatgcgga
     2281 cacgatccgt gggtgcaagg tacagcttct gcccaggctt gacgccaaac gcctggtacc
     2341 aagggtccat gttgcgaacg acatcagtgc gaacggggca cggcgaatgc ggatcggtaa
     2401 gcaactgctg ccgaagcgct ggttcgcgtt ccttgcaccg ccagacctgg gcccatccaa
     2461 gatagaagcg ctggtcagcg gtcattccat caaccaccgg cggcggcgca ccgttcagcg
     2521 aggcgagata cgcatcgtgg gagaccgtca ggccagcgag gtcggcgacg ttctcgccca
     2581 tggtgagttt cccattgacg tgcattcccg gcagcggttc gtaggaatcg atctgccgct
     2641 cgtacttgtc gagacgcgcg tggaattcct tgctgtcgcc cggtgtccac cagtcaacaa
     2701 gattgccatg gaggtcgtac ttggcgccct ggtcgtcgaa ctggtggctc atctcatgtc
     2761 cgatcaccgc gccaatgccg ccataattga cggctgcgtc ggcatgggga tcgaaaaagg
     2821 gcggctgaag aatcgctgct ggaaagacga tctccaccat cgtcgggttc gaataggcgt
     2881 tgatggtcat cggggtcatg ccccattccc agcgccggat tggaccaccg agctttccaa
     2941 cctcgtaggc atgctcgaac cgagctgacc gcatggcatt gccgagaagg tcgtcgcgcc
     3001 ggattacgag accgctcatg tcgcgccacc gcgacgggta accgatcttc ggcgtgaagg
     3061 cggcaagctt cgcgtgcgcc ttcgccttcg tcgccgggct catccagtcg agccgatcga
     3121 ttcgacggtt catcgcggca atgagattgt ggaccagctg atcagcggcg gccttggtct
     3181 cagccgggaa atagcgcgca acgtacaagc ggctgacgtc gtctcccagc gcatcaaccg
     3241 tgaagttgac gccgcgccgc caacgcggct cctgctgggg agtgccggac aaaacggtac
     3301 catagaaggc aaagttctcg cggtcgaagc gctgcggcag gtaaggcgca aaatgatcaa
     3361 gcgaacgtac cagcagctgg tctttcagca ctggcagcgg agtttgcccg attatgtcgc
     3421 tgatcccttt gaacgcgctc ggctgggcca cgacgacata ggcgacgttc gcgccgagat
     3481 cgcgtgcaag agcgggaaaa tcgaaactcg gagcaagcga gcgcacctcg gcgagcgtga
     3541 gcttattgta ggttttttcc gcgtcccggc tctcggccct tgtccaatgg gcctgggcaa
     3601 tcttggtctc gagagcgaca attgctgaag cgcgggcagc cgcgttcggc tcacccgcca
     3661 gcgatagcat gttagtaaga tgctgaagat acttgttgcg cgtttcgacg agtttgggat
     3721 cgttcgacaa ataataatct cggtccggca tcccgatgcc gccctggatg acgttcagag
     3781 catagcggtc ggacgcccgc cgatcctgtc caacgaacat ccggaagggg atcccaacgc
     3841 caagctcatc ggcgtgcgcg taaagctgcg tgagcgcgcc cttcgaactg gtttgcttga
     3901 tctcgttaag ccacggctca agcggagcaa gccccttcgc ttcgattgcg ggctcgtcca
     3961 tgaagcttgc ataggcgttc ccaatcttgc tgttgggatc cttcgcctgc tcttcgataa
     4021 tcgtccgggt ccgctccttc gacagatcat cgaggacgtt gaacatgccg tagcgcgcct
     4081 tgtctggcgg tatttgcgtg tttcggtccc acgtcccatt ggcgtagcca aagaaatcgt
     4141 cacccggtgc aatgctcgta tccattcccg agctgtcgaa gccaaaggcg ccatattgcg
     4201 gccttcctgg cgcagcctgc tgcgccgcgg ctggagcttc ggaagctgcg agcatcgccg
     4261 ttccagcaag tgctgacgtt gcaagagcga acgcgaacaa tttagccatc gtgatcctct
     4321 cgatctgagt ccccctatcc ttcgctaagg ctcgaaatca ccgtaacgtc aatgacgagg
     4381 aggactttgt tcggaacatc gaagagctag aggattgggc gccggcgcct ccgccatcgg
     4441 ttcgcgcacc aaagtcgcca tacgaacgac gaacttagat aacccacgat accaagcgcc
     4501 attgcaatgg tgagaacccc tacggcaatc gatcccgacg cgtgatggat ccagaatagc
     4561 atgcggctga gctcgctcga gaaacgctct gcatcggcgg gatccacgat ggccgcatcg
     4621 tggtgaagtt cccacgagcc gatgcggtaa gcggcataat aaagtggcgg tatcgtgaga
     4681 gggttcacaa caagagtgaa gagagcggcg accgcaacat ttgcccgtgc cggaatggcg
     4741 acgagggctg cgatcacggt gtgcatgaac ggaatgatga ccgcgacgaa ga
//
LOCUS       DASRBJ010000099         6428 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_569878,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000099 DASRBJ010000000
VERSION     DASRBJ010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6428
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_569878"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1106)
                     /locus_tag="VE968_02835"
     CDS             complement(<1..1106)
                     /locus_tag="VE968_02835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010338800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HZU50792.1"
                     /translation="MAPQKPYTVKGPANRDDPYYWLRDDSRKSPEILGYLKAENAYAD
                     AMLAPTKPLQDKLFAEIMSRIKQDDSSVPARKRGYWYYSRFASGQDYPVLARKAGTLH
                     AKEEVMLDEPTMAKGHGFFAIGASAVSPNNRLLAYAVDTVGRRQYALRVKDLSTGRTL
                     SDVVDNVEPDVVWADDNRTVYYIEKDPVTLLSKRVKAHVLGTPSSADRLVYEEKDDSF
                     YTSVGRTSDDKYICIAVESTVSDEQRCTSAAKPARFKVLAPREREFHYEADHVGSRWI
                     IRTNADGATNYKLVQLSDANAAKGRSAWRDLVPHKADVFIENFQPMDGFIAIEERSRG
                     NKHIRLLSNSGASRDVASDEPAYSMRIGQNPEVGA"
     gene            complement(1390..1569)
                     /locus_tag="VE968_02840"
     CDS             complement(1390..1569)
                     /locus_tag="VE968_02840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50793.1"
                     /translation="MRDDAAYYRSRAQEEIAAAVGAEPTSARKAHLELAQRYQDLATA
                     IELRDGAKTPDATAI"
     gene            complement(1743..2336)
                     /locus_tag="VE968_02845"
     CDS             complement(1743..2336)
                     /locus_tag="VE968_02845"
                     /inference="COORDINATES: protein motif:HMM:NF025605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HZU50794.1"
                     /translation="MARDRRTEILDVAREVFLEQGYAAASMSTIASRVGGSKGTLYNY
                     FDSKEQLFRAHIERECALSAENIFGSADESQDIASQLLDLGIRYLATLTSERVIANAR
                     AVVAEAGRNKEVGEIFYDAGPRAGGERLAQLFEQAGASNKLKIDDPQIAAHHFMALCQ
                     AGVYRRRLFNVGGKPSAKNIRTDIEAAVRTFMRAFAV"
     gene            2473..3948
                     /locus_tag="VE968_02850"
     CDS             2473..3948
                     /locus_tag="VE968_02850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007687587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HZU50795.1"
                     /translation="MTSHSSNPAKVMRLGSGVAAASVLVFALSGCLAVPKVGEPAQRM
                     QVSQLESDRSLAAAPAPWPTEKWWERYGDPQLTSLIEQGIAGSPTVSQAEARLREADA
                     LADRARANTGPQLTANASVQLMKQSYNNGIPAAFVPHGYNDYGQATLNFIYDFDFWGR
                     NRAAVAAATSEARASSADVAASRMVLAASIADAYGELSRLFAARDIAAEALKVREQSA
                     ELVRQRVTNGLETLQSERQAGAEVPAARHAVTALDEQIGLTRNRIAALVGTGPDRGLD
                     IQRPPRPLSAPFGLPQNLAAELLGRRPDIAAARWRAEAATSRVGVARAAFYPNVNLTA
                     FIGFQALGLANLLRPGSNVGSAGPAISLPIFDAGRIRADYRGARAEADAAVDAYNEAL
                     VEALHQVADAATSERTLATRIKDAGQSLAQSEDAYRLAKLRYQGQLSNYLTVLDAEDR
                     VLTARRSLSDLEARAFTLDVALVRALGGGFSPNTRSDGTHQ"
     gene            3945..5093
                     /locus_tag="VE968_02855"
     CDS             3945..5093
                     /locus_tag="VE968_02855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006952477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HZU50796.1"
                     /translation="MSDTATLDNAAAVQENGESSLQSNRRRWLTILVIVVIAGAILWF
                     AYDRIVSAGKVSTDNAYVGADTAQVTPQVNAAVRSVNVSDTQAVKAGQVLVTLDDTDA
                     RIALATAQADLQRAIRQVEQLGAQGQSLQAQVQASSASAAETRAQLLKAQGDVERARV
                     ELARRQRLFPTGAVAGEEITTAKNALQTATSELEEAEAARNQALAAQRAAVETRRSNA
                     VLIAGPIGEEPEVAAARARVEAARVDLARTIIRAPIDGVIARRSVQVGQRVQVGTPLM
                     SVVPVQSAYVDANFKEVQLDKVVPGLPATLTSDLYGSKVVYHGRVLGFAGGTGSAFAL
                     VPAQNATGNWIKIVQRLPVRIALDPRELHEHPLRVGLSMNATIDVSRR"
     gene            5100..>6428
                     /locus_tag="VE968_02860"
     CDS             5100..>6428
                     /locus_tag="VE968_02860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HZU50797.1"
                     /translation="MSGQAIAKGPPPLTGMSRGIASIALALGTFMMVLDSTIANVAVP
                     TVAGNLGVSTSQGTWIITSFAVANGASVPLTGWLMGRYGVVRTFVASVAMFTIASVLC
                     GLAWDMSTLIAFRVLQGAVSGPMIPGSQALLIMIFPPNKRATALAIWSMTTLVAPICG
                     PILGGYISDNYSWRWIFLINGPIGVASALICWRYLRARETPTRKLPVDRIGFALLLLW
                     VGALQVMLDTGKDADWFHSTPIIIEAVVSLIAFAAWLIWELTDEHPIVDLSLFRNRNF
                     ALGTLAFALSYAVFFGNNLLLPLWLQTQVGYIATWAGLVAAPSGVIAVLLTPIGARFA
                     PKVDARIIATIALAAFAFSFYMRSGYTPDASFTTYMKPMLVQGLGMSLFFTAMLTISL
                     RDVPEHRVPAASGLSNFSRITAGSFAASITTTVWDNRAALHQTRLVEQANT"
BASE COUNT         1191 a         2038 c         1911 g         1288 t
ORIGIN      
        1 gcgccgacct cggggttctg cccgatccgc atcgagtaag ctggctcgtc cgacgcgaca
       61 tccctactcg caccagaatt gctgagcagg cggatgtgct tgttgcctcg agagcgctcc
      121 tcgatcgcga tgaagccatc catcggttgg aagttctcga tgaaaacatc cgctttgtgc
      181 ggcaccagat cccgccacgc ggaacggccc ttagccgcat tggcatcgga aagctgcaca
      241 agcttgtagt ttgttgctcc gtcagcgttc gtccggatga tccaccggct gccgacatga
      301 tctgcctcgt agtgaaactc gcgctcacgc ggcgccaaaa ccttgaatcg ggcaggcttt
      361 gcggcactgg tgcaacgctg ctcatcactg accgtgctct cgacagcaat gcagatgtac
      421 ttgtcatcgc tggttcgccc aacgctcgtg taaaagctgt cgtccttctc ctcgtagacc
      481 agcctgtcgg ctgatgacgg cgttccgagc acatgcgcct tcacacgttt gctgaggagc
      541 gtcactggat ccttttcaat gtagtaaact gttctgttgt cgtccgccca aacgacatcc
      601 ggttcaacgt tgtcgaccac atccgagagg gttctgccgg tcgaaagatc cttcacccgc
      661 aaagcatatt gtcgtcgccc caccgtatcg acggcatagg ccagcaaccg attgttgggg
      721 cttactgcgc tcgcgccaat agcgaaaaag ccgtgtccct ttgccatcgt cggctcgtca
      781 agcatcacct cctctttggc gtgcagggta ccagctttgc gcgcaagaac ggggtagtcc
      841 tgaccggagg cgaagcgact gtaataccaa tagccgcgct tgcgcgccgg gacgcttgaa
      901 tcatcctgtt ttatccgact cataatctcg gcaaaaagct tgtcctgcag cggtttcgtc
      961 ggggcgagca tcgcatcggc ataggcattc tccgccttta gatagccgag tatctcggga
     1021 cttttccgag agtcatcgcg aagccagtaa taaggatcgt cacggttggc gggccctttt
     1081 acggtatatg gcttctgcgg tgccacggga ggcgcaatcg ccggctccgc aaaagctagc
     1141 ccggaggttg acagtaacgc tgcagcgaac acgaccagtc tcatgggatg ccccgtcatc
     1201 gcccaagctg atgatggtgc cccttggcga gcgataagcc aagccgttct tcgctgccgc
     1261 agtttcgaga ccgcggcacc tgccgctctc ccgctgttcg ctagccaagt tattcagcgc
     1321 cgatgccctg ccaagcgtcg gcaaattgtc cgatgaaatc aacaccggtc gaagactcaa
     1381 gccgacgagc taaattgcgg tggcgtccgg cgtttttgca ccatcgcgca actcgattgc
     1441 ggtggccaga tcttggtagc gctgagctag ctcgaggtgc gctttgcgtg cggacgtcgg
     1501 ttctgcaccg acggctgcgg caatttcttc ctgagctctg ctacggtagt aagcggcgtc
     1561 gtctcgcacg tgcgcatcct ccaatcgctc gggaatgctt ctagtggtcg tgcgtgaaca
     1621 cgtgattgcg tgcgacgtca gctctccgca agaatcctcc caagattgag gattggccaa
     1681 agccctcgct gatccaaccg ttgctggatt tgaggctggt gaagcccagt ctcgtgcctc
     1741 gttcagactg cgaatgcgcg catgaacgta cggacggcgg cttcgatgtc tgtcctgata
     1801 ttcttggcgg acggcttccc gccgacgttg aacaggcggc gtcgataaac tcctgcctgg
     1861 cacaaggcca taaaatgatg agccgcaatc tggggatcgt cgattttcag cttattgcta
     1921 gctcctgcct gttcgaacag ctgagctaga cgttcgcctc ctgcccgggg gcccgcatcg
     1981 taaaagatct ccccgacctc tttattccgc cccgcctcag cgacgacggc gcgcgcgttc
     2041 gctatgaccc gctctgatgt gagtgtcgcg aggtaccgga ttccaaggtc gagcaattgc
     2101 gaagctatgt cctggctctc gtctgccgat ccgaagatgt tctcggctga aagggcgcat
     2161 tcccgttcaa tgtgcgcgcg aaacagctgc tccttgctgt caaagtaatt gtaaagcgtg
     2221 cctttcgagc caccgacgcg cgacgcaatg gtcgacatcg acgcagcggc atacccttgc
     2281 tcaaggaaca cctcgcgagc gacatcaagt atctccgtcc ggcgatcccg ggccattgcc
     2341 taatcctctc gacgatcatt cctgctctat cgtgaaccgg ccttcaagcc gagttgacga
     2401 acgtgcttga gatcggtagg cggccctcga ctgaccgtac cgtacggtta ttgataggcc
     2461 aaagtactgc ttgtgacaag ccattcgagc aatccggcaa aggtgatgcg cctcggcagc
     2521 ggagtcgccg cggcgtccgt tctggtattc gccttgtccg gctgccttgc cgtaccgaaa
     2581 gtgggcgaac cggcgcagcg catgcaagtc tcgcagcttg agagcgaccg cagcctcgcc
     2641 gccgcccccg caccatggcc gacggagaaa tggtgggagc gctacggcga cccccagctc
     2701 acgagtttga tcgagcaggg aatagcgggt tcacccaccg tttcgcaggc ggaggcgagg
     2761 ctccgcgagg cggatgcgct ggcggaccgt gctcgcgcca acaccggacc gcagctcacg
     2821 gctaatgcca gcgtccagct catgaagcag agctataata acggaatccc ggccgcgttt
     2881 gtcccgcacg ggtacaatga ctacggccag gccacgctta atttcatcta cgattttgat
     2941 ttctggggtc gcaatcgcgc agccgttgct gcagcgacat ccgaagcgcg cgcatccagt
     3001 gcggacgtcg cggcttcccg catggtcctc gccgcatcga tcgccgatgc ctatggcgag
     3061 ctctccaggc tgttcgcggc gagagacatc gcggctgagg ccctgaaggt ccgcgagcag
     3121 tcggctgaac tcgtgcgcca gcgtgtgacc aatggacttg agacgcttca gtctgaacgt
     3181 caggcgggcg ccgaggtccc cgccgcacgg catgcggtca cggcgctcga cgagcagatc
     3241 ggactgacac ggaacaggat tgcagcactg gtcggcaccg gaccggaccg tggcctcgac
     3301 attcaacggc ctcctcgacc gctctccgct cccttcggcc ttccgcagaa cctcgccgcc
     3361 gaactgcttg gccgtcgacc cgacattgcc gcggcgcgct ggcgcgccga ggcagcgacg
     3421 tcgcgggtcg gagtggctcg tgcagccttt tacccgaacg ttaatctcac cgcgttcatc
     3481 ggcttccagg cactcggatt ggcaaacctg ctgaggccgg ggtccaatgt gggaagcgcg
     3541 gggccagcga tcagtctgcc tatctttgat gccggtcgga tccgcgccga ctatcgcggt
     3601 gcgcgcgccg aagccgatgc cgcggttgac gcatacaacg aggcactcgt cgaggccctc
     3661 caccaggtcg ccgacgcggc gacgtccgaa cgaacactcg caacgcgtat caaggatgcc
     3721 gggcaaagcc tcgcccagag cgaagacgct tatcggctcg cgaagcttcg ctaccaggga
     3781 cagttgtcca actatctcac cgtgctcgac gccgaggacc gcgtgctaac ggcgcggcgc
     3841 agcctttccg atctcgaggc ccgcgccttc acactcgacg tcgcgctcgt acgcgcactc
     3901 ggcggcggct tcagcccgaa cacccgatcc gatggaactc accaatgagc gacactgcca
     3961 ctctcgacaa tgcggcggcc gtacaagaga acggcgaaag cagcctccag tccaatcgtc
     4021 ggcggtggct aacgatcttg gtcatcgttg tcattgcggg cgcaatcctc tggttcgcct
     4081 acgaccggat agtttccgct ggtaaggtgt ccaccgacaa cgcttacgtc ggagcggata
     4141 cggcgcaggt cacgccgcag gtcaacgcgg ccgttcgctc ggtgaacgtc agcgacacgc
     4201 aagcggtgaa ggccggacag gtcctcgtga cgctcgacga tacggacgcc cggatcgcgc
     4261 tcgcaaccgc ccaagcagat cttcagcgcg ccatacgcca ggtcgagcag cttggcgcgc
     4321 aagggcagtc cttacaggca caggttcaag caagctcagc aagcgccgcg gagacgcgcg
     4381 cacagctgct gaaggcgcag ggagacgtcg agcgcgcgcg cgttgagctt gcccgacgtc
     4441 agcggctgtt tccgacgggt gcagttgcgg gcgaagagat aactacggcc aagaacgccc
     4501 tacagacggc gacatcggag ctggaagagg cagaggccgc gcggaaccag gcgctcgccg
     4561 cccagcgcgc tgctgtcgag actcgccggt cgaacgcggt gcttattgcc ggcccgattg
     4621 gcgaggaacc cgaagttgcc gctgcgcgtg caagagtgga ggcggcgcgc gtcgatcttg
     4681 ctcgaacaat catcagagcc ccgatcgacg gcgtgattgc tcgccgcagc gttcaggttg
     4741 ggcagcgcgt tcaggtgggc acgccgctga tgagcgtcgt tccggtccag agtgcgtatg
     4801 tcgacgcgaa cttcaaggag gtgcagctcg acaaggtcgt gccggggttg ccggcaacgc
     4861 tgacttccga cctctacgga agcaaggtcg tctatcatgg tcgtgtactc ggatttgccg
     4921 ggggcactgg ctccgcgttc gcgctcgttc ccgctcagaa tgccactggc aactggatca
     4981 agatcgtgca gcgattgccg gttcgaatcg cgctcgatcc cagagagttg cacgagcatc
     5041 cgctgcgtgt cggattgtcc atgaacgcga cgatcgacgt ttcacgccgg taaagcggca
     5101 tgtctggtca agccattgcg aagggtccgc cgccgctgac cggcatgtcg cggggtatcg
     5161 cgtcgatcgc gctcgcgctc ggtaccttca tgatggtgct ggattccacg atcgcaaacg
     5221 tcgccgtgcc caccgtcgcg ggaaaccttg gtgtcagcac cagccagggt acgtggatca
     5281 tcacgtcctt cgccgtcgcg aacggcgcat ccgtgccgct gacgggatgg cttatgggac
     5341 gctacggcgt ggttagaacc ttcgtcgcat cggtggcgat gttcacgatt gcctccgtcc
     5401 tgtgcggcct tgcctgggac atgagcacgt taatcgcctt tcgcgtcctc cagggcgccg
     5461 tctcaggtcc gatgatcccg ggaagtcagg cgcttctgat catgattttc ccgccgaaca
     5521 agcgtgcgac ggcacttgcg atctggtcga tgaccacgct cgttgcaccg atatgcggcc
     5581 cgatcctggg cggctatatc tcggacaatt attcctggcg gtggatcttc ctcattaacg
     5641 gtccgattgg ggtcgcctca gcgctgatct gctggcgcta cctgcgggcc cgcgagacgc
     5701 caacacgaaa gctcccggtt gaccggatcg gctttgctct cctgctgctc tgggtcggcg
     5761 ctcttcaagt gatgctcgac accggcaagg acgccgattg gttccattca acgccgatca
     5821 tcatcgaagc ggtcgtatcg ctgatcgcgt tcgcggcgtg gctcatctgg gaactgaccg
     5881 acgagcatcc catcgtcgac ctgtcactat tccgaaaccg caacttcgct cttggcacgc
     5941 ttgcattcgc cctgtcgtac gcagtgttct tcgggaacaa cctcctgctt cccctgtggc
     6001 ttcagacgca agttggatac atcgcgacat gggcggggct cgttgccgct ccaagtggtg
     6061 tcatcgccgt gctgctcacc ccaatcggag cgcgcttcgc cccgaaggtc gacgcacgca
     6121 tcatcgcgac aatagcactc gcggccttcg cgttctcttt ttacatgcgt tccggttaca
     6181 cgcccgatgc aagcttcacg acctacatga agccgatgct cgtgcagggt cttggcatga
     6241 gcctgttctt cacagccatg ctgacgatct cgcttcgaga cgtcccagag catcgcgtgc
     6301 ccgcagcgag cggcttgtcg aacttcagtc ggatcactgc aggcagcttc gcggcttcaa
     6361 tcaccacaac ggtctgggac aatcgcgccg cgctgcacca gacacggctg gttgagcaag
     6421 caaacacc
//
LOCUS       DASRBJ010000100         3331 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_619476,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000100 DASRBJ010000000
VERSION     DASRBJ010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3331
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_619476"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(293..883)
                     /gene="ruvA"
                     /locus_tag="VE968_02865"
     CDS             complement(293..883)
                     /gene="ruvA"
                     /locus_tag="VE968_02865"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HZU50798.1"
                     /translation="MIARLSGILIEVGNDNAVIDVGGVGYLVHLSSRTVDVLGPIGGE
                     VLVLTDLQVREDSWTLFGFGSSAERDAFRALTSVQGVGGRLALAILSILSPDELARAV
                     TQGDKALIGRASGVGPKLAARIANELHGKFAGGVASSAVAVKRGSFSMDAVSALSNLG
                     FKPAEASAAVNAAEAELGPDAGLDALVRLALKKAAK"
     gene            complement(1163..1651)
                     /gene="ruvC"
                     /locus_tag="VE968_02870"
     CDS             complement(1163..1651)
                     /gene="ruvC"
                     /locus_tag="VE968_02870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014074700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HZU50799.1"
                     /translation="MIIIGLDPGLATTGWGLIEAQGNRLRHVANGEIRTDSSLELPQR
                     LVFLADQLDRLIGEHAPSAGAIEEVFVNKNPQSTLKLGQARGVVLVCAARSGIAIGEY
                     AARLVKKAVVGVGNADKVQVHAMVSRLLPGTNIAGADAADALAVAITHAHHVASRIRG
                     IA"
     gene            complement(1756..2499)
                     /locus_tag="VE968_02875"
     CDS             complement(1756..2499)
                     /locus_tag="VE968_02875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007407072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HZU50800.1"
                     /translation="MAGHSKFKNIMYRKGAQDKKRSALFSKLSREITVAAKMGLPDPD
                     ANARLRAAIIAARAQSMPKDNIQRAIDKAAGSDAENYEEIRYEGFGPGGVAVIVEALS
                     DNRNRTATNVRTIFSKNGGNLGASGSVSHGFERLGLIEYPPSAGDSEKVLEAAIEAGA
                     EDVESDDDGHRIWTTIENLHEVARLLEPLLGESTGAKLAWKPSTAVEVRGDDAQQLMK
                     LIDALDEDDDVQSVWGNYEVPDEELANLA"
     gene            complement(2509..2751)
                     /locus_tag="VE968_02880"
     CDS             complement(2509..2751)
                     /locus_tag="VE968_02880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009822273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2312 domain-containing protein"
                     /protein_id="HZU50801.1"
                     /translation="MAEGTVAADQLRLFIERIERLEEEKKGISDDIKDVYAEAKSNGY
                     DTKTMRAIVRLRRMEAHARQEADALLETYRQALGLE"
     gene            2845..>3331
                     /locus_tag="VE968_02885"
     CDS             2845..>3331
                     /locus_tag="VE968_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HZU50802.1"
                     /translation="MTESLPPRSRKVKILATLGPASSDPDMIRRLMLAGADAFRINMS
                     HGDQEQKAKLVEHIRALEKEFHRPSTILFDLQGPKLRVGHFDGGRTVLEKGQRFIFDD
                     DERAGDSARVQLPHPELFQSVRPGTSILVDDGRVRLNVLEADSGHIVSEVKVGGPVSD
                     NK"
BASE COUNT          655 a         1031 c          925 g          720 t
ORIGIN      
        1 tggagcacct ccaaagtcga gaagctactg ggtctcaatc ttgttcggct ctatcaggat
       61 gcttggagcg cctgatcttc gatccgaacg ctcgcttacc tcaaaaacgg tcgcccgaca
      121 gcggttgctc tcttgccaaa gcgaaacgct tgccaagcaa aatggcactt gtcgattgtg
      181 ctccagtcga tggcatttcg accgcgatga tcggccctgg gaatgaagag gtcagtcgcg
      241 ttctgagcag cagccgttac cgcatttgtt tcgcactagc gtggttatcc gctcacttgg
      301 ctgctttctt caaagccaat cgaacgaggg cgtcgaggcc tgcgtcgggc ccaagttctg
      361 cctccgccgc gttcacggca gcgcttgctt ccgctggctt gaagccgagg tttgaaaggg
      421 ccgagacggc atccatcgag aagcttccgc gctttaccgc cacggccgac gaagcgactc
      481 cgcccgcgaa cttgccgtgc agttcgtttg cgattcgcgc cgcaagcttt ggacccaccc
      541 cgctggcgcg cccgatcagc gccttatcgc cctgagtcac cgccctcgca agctcatccg
      601 gtgacagaat cgaaaggatc gccagggcaa gccggccgcc aactccttgg acagatgtaa
      661 gggcgcggaa tgcatcgcgc tcggccgatg atccaaaacc aaacaatgtc catgagtcct
      721 cccgcacctg gaggtcggtc aggactagga cttcgccgcc gatgggtccg agcacgtcga
      781 cggtacggct gctcaagtgg acgaggtagc caacgccgcc gacgtcgatg acagcattgt
      841 cattgccgac ctcgatcaaa atccccgaca ggcgtgcgat cattcaggca ccagcgcttg
      901 atcatctgct cgcctcgctt ccgcgagcgc cgctactaga atgaacctcg ttccgatctc
      961 aggatgccag ttgacgctga taatcacggt cgcgctgctt accgtgcatt tttcgttcga
     1021 agcaagaacg caagatgggt gagtgccact gttcgttcag ggtcgtgcct cttccacggc
     1081 tcccgcaact tgcaggatct cggcagcggg cgatcgcaag gcttgtcttg atagaagatc
     1141 gacacggggc cggaggcacc cgtcatgcaa ttccacgaat tctgcttgcc acgtgatgag
     1201 catgggtgat cgcgacggca agtgcgtctg cggcatccgc accggctatg tttgtgcccg
     1261 gcagcaacct tgagaccatt gcatggacct gcactttgtc cgcgttgccg acgcccacca
     1321 cagccttttt cacaagacgc gcggcatatt cgccgattgc aatgcccgat cgcgccgcgc
     1381 acacgaggac taccccacgt gcctggccaa gcttgagcgt ggactgcggg ttcttgttga
     1441 cgaacacttc ttcgatcgca ccggctgatg gcgcatgctc gccgatcagc cgatcaagct
     1501 gatccgcgag aaatacgagc ctttggggaa gctctagaga tgaatcggtt ctgatctcgc
     1561 cgtttgcgac atgccgcaag cgattgcctt gagcctcgat gagcccccag ccagtcgtcg
     1621 cgaggcccgg atcaagaccg ataatgatca tgggtgagca gcgccaacct tcttgaactc
     1681 gagctcaacg aggagctgat caaccacaag aaacagcaga gagagaccaa gggcattgaa
     1741 ctgcttgccg actccttaag ccagatttgc gagctcctca tcgggtactt cgtaattgcc
     1801 ccaaacgctc tggacatcgt catcttcgtc gagcgcgtcg attaacttca tgagctgctg
     1861 cgcgtcgtcg ccccgcacct ccactgccgt cgacggcttc cacgccagtt ttgctcccgt
     1921 gctttcgccg agaagtggtt cgagtaagcg cgcaacctca tgcagattct cgatcgtggt
     1981 ccagatccgg tgtccatcgt cgtcgctttc gacgtcctcg gcacccgcct cgattgccgc
     2041 ttcgaggacc ttctccgagt caccggcgct tggcggatac tcaatcaatc cgagccgctc
     2101 aaagccatgg ctgacgcttc cgcttgcacc aaggttgccg ccgttctttg aaaagatcgt
     2161 ccgtacgttt gtagcggtcc ggtttctgtt gtcggatagc gcctcgacga tcaccgctac
     2221 gcctccaggg ccaaaacctt cgtagcggat ctcctcataa ttctcagcat cggaacccgc
     2281 cgctttgtcg attgcgcgct ggatattgtc cttgggcatt gactgggccc gcgcggcaat
     2341 aatagccgca cggaggcgcg cgttcgcgtc cggatcgggc aatcccattt tggcagcgac
     2401 ggtgatctcg cgactgagct tcgagaaaag ggcggatcgc ttcttgtcct gcgccccctt
     2461 gcgatacatg atgttcttga acttgctatg gcctgccatg gcgctagcct attccaatcc
     2521 gagtgcttgg cgataggtct cgagcagagc gtcggcttcc tgccgcgcgt gcgcctccat
     2581 tctccggagc cgaacgatcg cacgcatcgt cttcgtatca tagccattcg actttgcttc
     2641 ggcatagacg tccttgatat cgtcgctaat gcccttcttt tcttcctcga ggcgctcgat
     2701 acgctcaatg aagagtcgca actggtcggc cgcgacggtg ccctccgcca tcttggttgt
     2761 tctccaattt ggatgtgtaa accgcggctc tagcggcttg aaccatcata tcaagcggct
     2821 aagggcaggc acaaaggagc acaggtgacc gaaagccttc cgccacgatc gcgcaaagtg
     2881 aagattctcg ctacgcttgg acccgcatcg agcgatccag acatgatccg ccgactgatg
     2941 cttgccggcg ccgacgcatt ccggatcaac atgagtcatg gtgatcaaga gcagaaggcg
     3001 aagttggtcg agcacatccg tgcgctcgag aaggaattcc atcgtccttc aaccatattg
     3061 ttcgacctcc aggggccaaa gctgcgcgtc ggccatttcg atggcggccg cactgttctt
     3121 gagaaggggc agcgcttcat tttcgatgat gatgagcgcg ccggagacag cgctcgtgtg
     3181 cagcttccgc atcccgagct tttccagtcg gttcgacctg gaacgagcat cctcgtcgac
     3241 gacggccgag tacggctgaa cgtgctcgaa gcggactctg ggcatatcgt cagcgaagtg
     3301 aaggtcggcg gcccagtctc cgacaacaag g
//
LOCUS       DASRBJ010000101         4429 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_619551,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000101 DASRBJ010000000
VERSION     DASRBJ010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4429)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4429)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4429
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_619551"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..284)
                     /locus_tag="VE968_02890"
     CDS             complement(<1..284)
                     /locus_tag="VE968_02890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M61"
                     /protein_id="HZU50803.1"
                     /translation="MRRVALALMLSSGLCSAALAQLIPPQNSRPQATPKIDTIPPARD
                     TPYPGTIQLTVDASDVTRAIFRVHEHVPVPHSGDLVMLYPKWLPGNHSPSG"
     gene            446..3091
                     /locus_tag="VE968_02895"
     CDS             446..3091
                     /locus_tag="VE968_02895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU50804.1"
                     /translation="MNSRCLLLASAATIVLSSPVLAQQPQPAPAPAPLPAPAASATLS
                     QSATGQPAEVPTMAQPPAPPPAPSAGDDAGDDEDIVITGSRPRGSVIGDIPPENTLDA
                     RDIRATGATNINDLLDALAPQIGSVRGRGGEAPVLLLNGERISSFRELRDIPTEAIVR
                     VEILPEEVALKYGYNADQKVVNIVLRQRFRSTTAQLGAGLATEGGYANELGDLTRFLV
                     QRNGRTTINLHAEGNSMLTENERDVSIEAPAAGTTEQDLAARSLVGSKRDLRAGSTFN
                     RQIFGNASATLNTEVEHTDGTSFIGLNPSLLDPLVRDTSTNTAHAGLTMNGQTKSQWH
                     WNLTSNADLADTLTKTDQSEDPTFGRDRAKETTESGDITGNVNGNLFKLPAGYATTTL
                     TLGGTTEHLKSTTSRPDLQSASNLSRTTGQAKINVDLPISHKGHDFSALGNLTINGNA
                     QVNQLSDFGTLTTVGAGVNLTPVDRLNLLASWTREEGPPTINQLGDPVIETPGSRVFD
                     FATGETVLVTAITGGNRNLTSDRRNVVKLSGNWQPFPNTDLRFRVDYVHQSIQRPIAD
                     ITVTPGLEAAFPGRFVRNSSGDLISVDLRPVNFDSSRRDQMRIGFDFSHPLKPRTPSQ
                     SVIQQMRAQFGFGPRGTGGPGGSPNGPATPSGTQQEARSGAAPAPSGSPGGFGGRGGG
                     FRGGRGGGGFFGGGNNNRGRIMFSLTDTVTFVDKVLVAPGGPTLDYLHGDATGATGGT
                     PRHNVQAQLTYFNNGLGARAVANWRSATDVDSLNGNDLHFSSYGTFDLRLFANPGDIP
                     EVVVKHPWLRGTQLQLNVTNLFNARPQVHDASGAVPNSYQPALLDPLGRTVMITFRKL
                     FLPSPAWFRRQFQLERQQQGTSPSR"
     gene            3128..4360
                     /gene="hisS"
                     /locus_tag="VE968_02900"
     CDS             3128..4360
                     /gene="hisS"
                     /locus_tag="VE968_02900"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HZU50805.1"
                     /translation="MTQVQPVRGTQSLLGEAADRLATVVEAFDRVRLIYGFRRVQIPT
                     IEHTSVFARTIGETTDVVSKEMYSFEDRGGEGITLRPEFTAGICRAYLSEGWQQFAPI
                     KVATHGSAFRYERPQKGRFREFHQLDAEIIGAGEPQADVELLAFADQLLKELGISGTI
                     LKLNTLGDPQTRASWREALYDHFRSRARELSEDSQARLERNPLRILDSKAHQDWPVVD
                     SAPTIDEFLTSEAADFFGKVTAGLDAAGVAWERAPRLVRGLDYYRHTAFEFVTDALGS
                     QGTVLAGGRYDGLIESLGGSHTPAVGWAAGIERLSMMIGAPPAERPVAMIIPLGDRAQ
                     NAGQALLAQLRRQGISADMGYRGSMKKRLGRANDAGARHVIIIGDDELERGEVQLKDL
                     ATGEQRAVRFDEVRKVLG"
BASE COUNT          921 a         1297 c         1344 g          867 t
ORIGIN      
        1 cccgaagggg aatggttgcc gggaagccat ttgggataga gcatcaccag atcacccgag
       61 tgcggcaccg gcacatgttc atgcactcga aatatcgctc gtgtgacgtc ggacgcatca
      121 actgtcagct gaatagtacc cggataaggc gtgtccctcg cgggcgggat ggtgtcgatt
      181 ttcggtgtcg cctgtgggcg gctgttttgt ggcggaataa gctgtgcaag cgcggcgctg
      241 caaaggccgc tggaaagcat aagggcaagc gcaactcggc gcatcgatgg taactcctag
      301 gcagcgaagc attaacgatc gttgaggttt gatctaccgt caatcgcgcg agccgccagt
      361 acctttcgtc ggcggccctc cccactttgt cgaacatcaa ttcgttgtca gcgttcgttc
      421 acattgcacg attagcgggg ggcaaatgaa tagccgctgc ctcctcctcg ccagtgccgc
      481 aaccattgtc ctttcgtcgc cggtgcttgc ccagcagcct cagcccgcgc ctgcacccgc
      541 gccgcttcca gcgcccgctg cgtccgcaac tttgtcgcag agcgcgactg ggcaacccgc
      601 cgaggtgccg actatggcgc agccaccagc gcctcctcct gcgccttccg ccggcgacga
      661 tgctggcgac gacgaggaca tcgtgattac cggttctcgt ccacgtggat cggtgattgg
      721 cgatattccc cccgaaaata cactggacgc cagggatata cgggccaccg gcgcaacgaa
      781 catcaacgac cttctcgatg cgcttgcgcc gcagatcggc agcgttcgcg gtcgcggtgg
      841 cgaagctccc gtcctgcttc tcaacggcga acggatttcg agtttccgtg agcttcgcga
      901 catcccgacg gaagctattg tccgggtcga aatcctcccc gaggaagtcg cgcttaagta
      961 cggctacaat gccgaccaaa aggtcgtgaa tatcgttctt cggcaacgat ttcggtcaac
     1021 cacggcacag ctcggcgccg ggctagcgac cgagggcggc tatgctaacg aacttggcga
     1081 cctcacgcgc ttcttggtgc agcgcaatgg ccggacgacg atcaacctgc atgccgaagg
     1141 caatagcatg ctcaccgaaa acgagcgtga tgtttccatc gaagcgccgg ctgcgggcac
     1201 gacggaacag gatctcgctg cgcgatcgct tgtcggctcg aaacgggatc ttcgcgccgg
     1261 aagtacgttc aaccggcaga tcttcggaaa cgcatcggcg acactcaaca ccgaggttga
     1321 acacaccgat ggaacctcgt tcatcgggct taatccaagc ttgctcgatc cacttgtgcg
     1381 cgacacgtcg accaatactg cgcacgccgg ccttacgatg aatggccaga caaagtcgca
     1441 atggcactgg aatctgacga gcaatgccga tcttgcggat acgcttacaa agacggatca
     1501 gagcgaagat ccgacattcg gacgcgaccg ggccaaggag acaaccgaat cgggtgacat
     1561 caccggcaac gtgaatggga acttgttcaa gctcccggca gggtatgcga cgacgacatt
     1621 gacgctcggc ggaacgaccg aacatcttaa gagcaccacc agccgacccg acctccagtc
     1681 ggcgagtaat ctttcccgga cgacggggca ggcgaagatc aatgtcgatc tgcctatttc
     1741 ccacaaaggg catgacttca gcgcgcttgg caacctcacg atcaacggga atgcgcaagt
     1801 caatcagctg tcggacttcg gaacgctgac gaccgttggc gccggagtga atctgacgcc
     1861 ggtcgatcgc ctgaacctgc tcgcaagctg gacgcgcgag gaggggccgc cgaccatcaa
     1921 ccagcttggt gatccggtca ttgagacacc cggctcgcga gtgttcgact tcgcgaccgg
     1981 agaaacagtg cttgtgacgg cgattaccgg cggaaaccgg aatctcactt ctgaccgtcg
     2041 caacgtcgtc aagctaagcg gcaattggca gccgtttccc aacacggatc tgaggttccg
     2101 cgtggattac gtccaccaat caattcaacg cccaattgcc gacataacag tgacgcctgg
     2161 cttggaggct gcctttccag gccggtttgt ccgcaacagc tcgggtgact tgataagcgt
     2221 ggacctgcgg ccagtgaatt tcgacagttc gcgtcgcgac caaatgcgca tcgggttcga
     2281 tttttcacat ccgctgaagc cgaggactcc gtcccaatcg gtgatccagc agatgcgcgc
     2341 gcagttcggc ttcgggccac gtggaactgg cggccccggc ggatcaccga atgggccggc
     2401 gaccccgtcg gggacgcagc aagaggcccg ttcaggcgcg gcgcctgcgc cgagcggttc
     2461 accaggcggc tttggtggcc gtggcggcgg cttccgcggc ggtcgtggtg gcggcggctt
     2521 tttcggcggc ggcaataata atcgaggtcg catcatgttt tcgctcaccg atacggtgac
     2581 gtttgtcgac aaggtgcttg ttgcccccgg agggccgacg ctcgactacc tccatggtga
     2641 cgcgacgggc gcgaccggtg gaacaccgcg ccacaacgtt caggcgcagc tgacctattt
     2701 caacaatggc ctcggcgcac gagcggtcgc caattggcgt agcgctactg atgtcgattc
     2761 gctgaacggg aacgatctcc acttttcgtc ctacggcact tttgacctca gactgtttgc
     2821 gaatccgggc gatattcccg aagtcgttgt taagcacccg tggctacggg gcacccagct
     2881 gcagttgaac gtcacaaacc tgttcaacgc caggccgcag gtgcatgatg cctcgggcgc
     2941 agtgccaaat agctatcagc cggcactgct cgatcctttg ggtcgcacgg tgatgatcac
     3001 tttccgcaag ttgttcttgc cctcgcccgc gtggttccgg cggcaattcc agttggagag
     3061 gcagcagcag ggaacgagtc catcgcgctg attgggcttc gtgcaaattt gtgcttaagc
     3121 ccgggcaatg acgcaagttc agcccgttag gggcacacaa agccttcttg gagaagcagc
     3181 ggatcgcctt gcaacagtcg ttgaggcatt tgatcgcgtg cggctgatct atgggtttcg
     3241 aagagtccag ataccaacga tcgaacatac ttcggtcttc gcgcgcacga ttggcgaaac
     3301 gaccgacgtt gtctcaaagg aaatgtattc tttcgaagat cgtggaggcg aagggatcac
     3361 ccttcgtccc gagttcacgg cgggaatttg tcgagcgtac ctcagcgaag ggtggcagca
     3421 gtttgcgccg atcaaggttg cgacacatgg gtcggccttt cgctacgagc ggccgcaaaa
     3481 gggccgattt cgcgagttcc atcagcttga tgctgaaatc atcggcgccg gcgaaccgca
     3541 ggccgatgtt gaacttcttg cgtttgcaga ccagctgctg aaggaactgg ggatcagtgg
     3601 gacaattctc aaactgaaca cacttggtga tccacagacg agagcatcat ggcgcgaggc
     3661 actttacgat cattttcgca gccgcgctcg cgagctcagc gaagacagcc aggcgaggct
     3721 tgagcgcaat ccactgagaa ttcttgacag caaggcgcat caggattggc cagtcgtcga
     3781 cagcgcgccg acgatcgatg agtttcttac gagcgaagcg gccgacttct ttggaaaagt
     3841 taccgctggg ctggacgcgg cgggtgtcgc gtgggagcgc gcgccaaggc tcgtccgagg
     3901 cctcgattat tataggcaca ccgccttcga gttcgtcacc gacgcgctcg gctcgcaggg
     3961 aacagtactt gctggtggtc gctatgatgg tctcattgag tccttgggcg gatcgcacac
     4021 gcctgccgtc ggatgggcgg cggggatcga gcgcctttcg atgatgatcg gcgcgccgcc
     4081 agccgagaga cccgtggcaa tgatcattcc gctcggtgac cgagcgcaaa atgcgggcca
     4141 ggcattactc gcgcagcttc ggcgtcaggg tatcagtgcg gacatgggct accgaggatc
     4201 gatgaagaag cgtctcggtc gtgccaacga cgccggtgcg aggcatgtta taattatcgg
     4261 cgacgatgaa cttgagcgcg gcgaagtcca gttgaaggat ctcgcaacag gtgagcagag
     4321 ggctgtccgt ttcgacgaag ttcgaaaggt gctcggctaa tgccccacat ctcatcggaa
     4381 cgtatcgcct cgatcgaggc gaagaagaat gagcttcagc aggcgatgt
//
LOCUS       DASRBJ010000102         5605 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_468042,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000102 DASRBJ010000000
VERSION     DASRBJ010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5605
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_468042"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..694)
                     /locus_tag="VE968_02905"
     CDS             complement(<1..694)
                     /locus_tag="VE968_02905"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZU50806.1"
                     /translation="MATIAIKGKASRSTTLLVLLLGAATFLNYVDRGAVGIAAPVMTR
                     ELRLSPEAYGLIFSAFFWVYAPVQLFAGRLCDRFSVYSLIAAGIALWAGSTFITGFAG
                     GFTSLLVLRILLGVGESISFPGSTKIISRHVPAQKRGIANAIVASGLALGPAAGTLAG
                     GLILASWGWRAIFLTFGIVTLLWLVPWRSAVGTLTPDELAERGRPVPLRALIGKWSLW
                     SMAIVHCLGNYSF"
     gene            complement(717..1970)
                     /gene="ftsA"
                     /locus_tag="VE968_02910"
     CDS             complement(717..1970)
                     /gene="ftsA"
                     /locus_tag="VE968_02910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HZU50807.1"
                     /translation="MAQVVDRSVIAALDIGSSKVSAIIARLEEDRRLTVLGTGQRESR
                     GVKRGFITDMGASEFAVREAVELAERMSGLTVDDVWASYGAGGLVSDVANVEVELGGH
                     PVEQADIDQLLAAGKDAIDRNGQVVLHAHPALYTIDRAQGVQQPIGLHASRLGVDIHV
                     VAAEPSPLRNIDTVIRQAHLGVRAIVASPIAAALACLSDEERELGVALVEMGAEVTNV
                     SVHLGGMMVGLRSVPLGAKDITNDIAAAFAVQRRDAERLKCFYGSAMTSPRDNHEMIE
                     AAQIGAEPGAEPMKLTRAQLMMVIRQRVEELTNEIEAALKDLGFTGPVGRQVVLTGGG
                     AELKNVADYMQGVLGRSVRVGRPRQITGLPDAHSGPAFSTLVGLALLAASGRGDIRDI
                     AGPVARPPRSKGVLGRLIDAMKGGY"
     gene            complement(1970..2893)
                     /locus_tag="VE968_02915"
     CDS             complement(1970..2893)
                     /locus_tag="VE968_02915"
                     /inference="COORDINATES: protein motif:HMM:NF015739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HZU50808.1"
                     /translation="MSAAHVRRGSVARASAKKAPKVAVPKKIAKRLPVDQARVNKIAG
                     AVFGIFVLAIGALVLVALDIPAKAERAAGTAVGDAGFVVSGYQITGISHMDRRLVDAV
                     VADELHRVATESGAEKAPQALVNVSAIRQRLLAYGWVKDARVSRRLPDTLVIDIVERK
                     PAALWQNQGQLALIDSDGVVLDRVPVDKMPDLPLLIGAGANSHEQQLSRIMADVPTLK
                     PQLASATWIGDRRWDLSFQSGETVALPEGESAARDALSKFARVDKQSGLLGRGIVRFD
                     LRVPGKMIVRLPRAPGEPIIPASAMPAAQEG"
     gene            complement(2890..3816)
                     /locus_tag="VE968_02920"
     CDS             complement(2890..3816)
                     /locus_tag="VE968_02920"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HZU50809.1"
                     /translation="MNRDRHVVVLMGGWSSEREVSLTSGKGVATALRERGWSNVTELD
                     MDRNVAARLAELKPDVVFNALHGTPGEDGTVQGMMDLMGLKYTHSGLETSVIAIDKEL
                     TKMVLVPHGIRMPAGRIVSSKSLHQEDPIDRPYVLKPVNEGSSVGVAIVTNDGNYGNP
                     IGKDVPGPWDEFDELLAEPFIRGRELTVAVLSGEPLAVTELKPKAGFYDYAAKYTDGL
                     TVHVCPAEIPYEISVAMMDMAARAHVLLGCRGASRSDFRWDDEQGEQGIYLLEVNTQP
                     GMTPLSLVPEQAKVKGIPYGELVERLIAEALG"
     gene            complement(3813..4712)
                     /gene="murB"
                     /locus_tag="VE968_02925"
     CDS             complement(3813..4712)
                     /gene="murB"
                     /locus_tag="VE968_02925"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HZU50810.1"
                     /translation="MNALATIPTVRGSLTANAPLAPLVWFKSGGNADWLFEPKDEEDL
                     VGFLRALDPDVPVMALGLGSNLIVRDGGIRGVVVRLGKRFAKVERMDDATLRCGGSAS
                     GILVSSTARDHAIAGLEFLRGIPGTVGGFVRMNGGAYGREVSDILVSARLALRSGEIV
                     EWPIEQFDYSYRHSDVPPGAIVIEATFKGTPGDSAAIGAEMDAIARAREESQPLRSRT
                     GGSTFKNPPGHKAWALIDAAGCRGLRQGDAQVSEKHCNFLLNLGSATSADIEALGEEV
                     RRRVAQKTHINLEWEIQRVGVEG"
     gene            complement(4709..>5605)
                     /locus_tag="VE968_02930"
     CDS             complement(4709..>5605)
                     /locus_tag="VE968_02930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HZU50811.1"
                     /translation="RLDGTIAVVTNIDPEHLEHYGSFERVKDAFVEFVENVPFYGLAV
                     LCVDHPEVQNIIGRIRDRRIVTYGFSALADVRADNVTAIPGGSRFDALILEREGERRT
                     VEGIHVPIPGKHNVQNALAAIAVALELGISDDAIVAGFERFEGVKRRFTKVGEIGGAT
                     IIDDYGHHPTEIRAVLAAARESAEGRVIAVMQPHRYTRLQTLMDEFQNAFNDADVVFV
                     TPVYAAGEEPIEGIDSNCLVEGLRAHGHRMVRAVETLDELCQALRDLAADGDIVICLG
                     AGDITKWAAALANGIGEARASK"
BASE COUNT         1115 a         1806 c         1608 g         1076 t
ORIGIN      
        1 agaaggaata attgcccaga cagtggacga tcgccattga ccacaacgac catttgccaa
       61 tgagcgcacg gagcgggacg ggcctccccc gttcagcaag ttcgtccgga gtgagcgttc
      121 ccaccgccga gcgccacggc acgagccaga gcaacgtcac gattccgaat gtgaggaaaa
      181 tcgcgcgcca tccccaggaa gctaggatta gccctcccgc gagggtgccc gctgccggcc
      241 caagcgcgag gcctgacgca acgattgcat tggcaattcc tcgcttctgc gccgggacgt
      301 ggcgcgatat tatcttcgtg ctgccgggaa acgagatgct ttcgccgacg ccaagcagaa
      361 tccgaagaac cagcagtgac gtaaagccgc cggcaaagcc cgtgatgaat gtactgcctg
      421 cccacagcgc aatccccgca gcaatgaggc tgtaaaccga gaaccggtca cagaggcggc
      481 cggcgaacaa ttgaacaggc gcgtaaaccc aaaagaatgc ggaaaagatg agcccgtatg
      541 cctcgggaga aagtcgaagc tctcgagtca tcaccggcgc ggcgataccg actgctccac
      601 gatcgacgta attaagaaaa gtcgcggcgc caagcagaag caccagaagc gtcgtcgatc
      661 tgctcgcttt tcccttgatc gctatcgttg ccatgccgcc tcccgaacgt gccgctctaa
      721 tagccgcctt tcatcgcgtc tatgagccgc cccagaaccc ccttcgaccg tggggggcgt
      781 gcaaccggac cagcaatatc acggatgtcg ccgcggccgc tggccgccag aagagcaagt
      841 ccgacaagcg tagaaaatgc tggcccgcta tgggcgtccg gaagtcccgt gatctgcctt
      901 ggtctaccga cccgaacgga gcggccgagg acaccttgca tgtaatcggc gacgttcttg
      961 agctcggctc cgcccccggt aagtaccact tggcgaccga cgggcccggt gaagccaaga
     1021 tctttgagtg ccgcctcgat ttcgttcgtc agctcctcca ctcgttgtcg gatcaccatc
     1081 atgagctgcg cacgtgtcag cttcatcggc tctgcacccg gttcagcgcc gatctgagca
     1141 gcctcgatca tctcatggtt atcgcgcggg ctggtcatcg ccgagccgta gaaacatttg
     1201 agccgctccg cgtcacggcg ctgtaccgcg aaggccgccg caatgtcgtt cgtgatgtcc
     1261 ttcgctccga gcgggactga gcgcaggccg accatcatcc cgcccaaatg cacggaaacg
     1321 ttggtcactt ccgcccccat ttcgacaagt gcgacgccaa gctcgcgctc ctcgtcgcta
     1381 aggcaagcaa gcgcagcggc gatcggcgat gcaacgatcg ctcttacgcc aagatgtgcc
     1441 tggcgaatga ccgtatcgat gttgcgaagg ggggaaggtt ccgcggcgac gacatggatg
     1501 tcgacgccca ggcggcttgc atgaagaccg atgggctgtt gaacaccctg cgcacgatca
     1561 atcgtgtaca gcgccggatg cgcgtgaagg accacttggc cattgcggtc gatcgcgtcc
     1621 ttcccggccg caaggagctg gtcgatatcg gcctgttcaa cgggatgccc gccaagctcg
     1681 acctcgacat tggcaacgtc gctaacgaga ccgccggcac cgtagcttgc ccagacatcg
     1741 tcgacggtaa ggccggacat gcgttcggca agttccaccg cttcgcgcac ggcgaactcg
     1801 ctagcgccca tgtcggtgat gaagccgcgc tttactccgc ggctttcgcg ctgccccgtc
     1861 ccgagaaccg tcaaccggcg atcttcctcg aggcgcgcaa tgatcgcgct gacttttgaa
     1921 gaaccgatgt cgagggcggc gattactgat cgatcgacga cttgcgccac tagccctcct
     1981 gtgccgcagg catagcggac gccggtatta tgggttcgcc aggggctcgt ggcagtcgga
     2041 cgatcatctt gcccggaaca cgaaggtcga agcggacgat gccacgaccg agaaggccgc
     2101 tttgcttatc gacgcgcgca aatttcgaca gggcatcgcg agccgccgac tcaccttcgg
     2161 gcagcgcgac agtttccccg gactggaacg acaagtccca ccgccgatcg ccgatccatg
     2221 tcgccgacgc gagctgcggc ttcagcgtcg gcacgtcagc catgattcgg ctgagctgtt
     2281 gttcgtggct gttcgcgcct gcgccgatta gcagcggcag gtcgggcatc ttatcgaccg
     2341 gaacacggtc aagcacgact ccatcgctgt caatcagtgc aagctgcccc tggttctgcc
     2401 acaatgccgc gggctttcgc tcgacgatgt cgatcacgag cgtatcgggc aggcgccgcg
     2461 atacgcgggc gtccttcacc caaccatagg caagcagtcg ctgcctaatc gcggagacat
     2521 tgacgagtgc ctgcggcgct ttctcggcgc cgctctcggt tgcgacgcga tgcaattcgt
     2581 cggcgaccac agcgtcgacg agccggcgat ccatgtgact aatgcccgtg atctgataac
     2641 cgctgaccac gaaaccggca tcgccgacag ccgtacctgc ggcgcgctcc gctttcgctg
     2701 gaatgtccag tgcaacgagc acgagtgcac cgatcgcaag tacgaagatg ccaaataccg
     2761 ccccggcgat cttgttcaca cgagcctggt caaccggaag gcgcttggcg atcttctttg
     2821 gaacagcaac cttcggcgcc tttttcgcac tcgcgcgagc gacgctcccg cgccggacgt
     2881 gagcagcact catccaagag cctccgcgat cagacgctcg accagctccc cgtagggaat
     2941 gcctttcacc ttcgcctgct cgggaacgag actgagcgga gtcatgccgg gctgtgtatt
     3001 cacttcgagc aggtaaattc cttgttcccc ctgctcgtcg tcccagcgga aatccgaccg
     3061 tgatgctccg cggcaaccga gtagcacatg cgctcgagca gccatgtcca tcatggcgac
     3121 actgatttcg tagggaatct ctgcgggaca aacgtgaacg gtaagaccgt ccgtatattt
     3181 agcggcataa tcgtaaaagc cggccttggg ctttagctcg gttacggcga gcggctcgcc
     3241 ggacaggaca gcaacggtca gttctcgacc cctgatgaaa ggctcggcga gcagctcgtc
     3301 aaactcatcc caaggcccgg gcacatcctt gccgattgga tttccgtaat tgccgtcatt
     3361 cgtgacaatg gcgacaccga ccgaggagcc ttcattgacg ggtttcaaca cataaggtcg
     3421 gtctataggg tcctcctgat ggaggctctt gctcgagacg atccggccag ccggcattcg
     3481 aatgccatgc gggacaagca ccatcttggt gagctccttg tcgattgcaa tcaccgaagt
     3541 ctcaaggccg ctgtgcgtgt atttcaggcc catgaggtcc atcatgccct ggacggtgcc
     3601 gtcttctccg ggtgttccat gaagcgcatt gaaaacgacg tcgggcttta gctctgcgag
     3661 ccgcgctgcg acgttgcggt ccatgtcgag ctccgtcacg ttcgaccagc cacgttcgcg
     3721 aagggcagtt gcgacgccct tgccgctcgt gagcgacact tctcgctccg acgaccagcc
     3781 ccccatcagt acgacgacat gacgatccct gttcacccct cgacccccac gcgctggatt
     3841 tcccattcca gattgatgtg cgttttctgc gcgacacgac ggcggacttc ctcaccgagc
     3901 gcttcaatgt cggcacttgt ggcgctacct aggttgagca ggaaattgca atgcttttcc
     3961 gacacttggg cgtcaccctg ccgaagtccg cggcaacctg ccgcgtcgat cagcgcccac
     4021 gccttgtgcc caggcggatt cttgaaggtg gagccgcccg tgcggctgcg cagtggctgc
     4081 gattcttcgc gcgctcgcgc tattgcgtcc atctccgcgc cgatcgcagc gctgtctccg
     4141 ggcgtaccct tgaacgtcgc ctcgatgacg atcgcacccg gcggcacgtc gctatggcga
     4201 taactgtagt cgaattgctc aattggccac tcgacgatct cccctgagcg cagtgcaagc
     4261 cgcgccgaga cgaggatgtc gctgacctcg cgcccatacg cccctccatt catgcgcacg
     4321 aagccgccga ccgtaccggg aatgccgcga aggaactcga gcccggcgat tgcatgatcg
     4381 cgcgccgtgg acgagacgag tatgccgctc gcgcttccgc cgcagcggag agtcgcgtcg
     4441 tccatgcgtt caaccttcgc gaaccgcttc ccaagtcgca caacaacacc gcgaatcccg
     4501 ccgtcgcgaa cgatgaggtt cgagccgagc ccgagcgcca tcactggtac atcggggtcg
     4561 agtgcgcgaa ggaatccgac gagatcttcc tcatctttgg gttcgaacaa ccagtctgca
     4621 tttccaccgc tcttgaacca gaccagcggc gcgagcggcg cgttggccgt tagcgaacca
     4681 cgaacggtgg ggatcgtcgc aagtgcgttc atttactcgc tcgcgcttcg ccgatgccgt
     4741 tcgcaagtgc cgcggcccat ttcgtgatat cgccagctcc aaggcatatc acgatatcgc
     4801 catccgcggc gaggtcgcga agagcttggc aaagctcgtc gagcgtttcg accgcgcgga
     4861 ccatccgatg accgtgcgct cgcagtcctt caacgaggca attggaatca ataccttcga
     4921 tcggttcctc gcccgcagca tagacgggcg taacgaacac aacgtcggca tcgttgaacg
     4981 cattctggaa ctcgtccatc agcgtttgca gtcgagtgta ccgatgcggc tgcatgactg
     5041 cgataactcg cccctctgcg ctctcgcgcg ccgcagcgag aacagcacgt atttcggtcg
     5101 gatggtggcc atagtcatcg atgatggttg cgccgccgat ctcccccact ttagtgaagc
     5161 gtcgtttgac gccttcaaac cgttcaaagc cagcaactat tgcatcatcc gaaattccga
     5221 gctccagtgc cacggcaatt gctgcgagcg cattctgaac attgtgcttg ccggggatcg
     5281 gcacgtggat cccctcgacc gtgcgtcttt caccttcgcg ctcgagaatg agtgcatcga
     5341 aacggcttcc gccagggatt gccgtgacat tatcagctcg cacgtctgca agtgccgaaa
     5401 atccataggt cactattcgc cggtcgcgga tgcggccgat gatattctgc acttcaggat
     5461 ggtcaacgca caggaccgca agtccgtaga acgggacgtt ctcgacgaac tcgacgaacg
     5521 cgtctttgac gcgttcgaaa ctcccgtaat gctcaagatg ctcaggatcg atgttggtta
     5581 cgaccgcaat cgtgccatcg aggcg
//
LOCUS       DASRBJ010000103         3034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_675266,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000103 DASRBJ010000000
VERSION     DASRBJ010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_675266"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..106
                     /locus_tag="VE968_02935"
     CDS             <1..106
                     /locus_tag="VE968_02935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HZU50812.1"
                     /translation="IAINKDEEAPIFQVADIGLVGDLFKIVPELTEKL"
     gene            164..1078
                     /locus_tag="VE968_02940"
     CDS             164..1078
                     /locus_tag="VE968_02940"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HZU50813.1"
                     /translation="MRLGAFLACAATAPLIMAAAQPVRLQPSSPWVVDYGDESCHLIR
                     TFGEGDSATTLMFEGYSPEKVDMLLIGAPLRTNYDEVSARFLPVQKNPQNGEVVQSAT
                     GKPAIFFSRIDLLPDEAEAKVDAQLRQLAAYPHVRPPATSLSDKLELQSQRQEFAAST
                     AELEIDERAGEHVIIETGSLGQAIKAFDQCMQDSLQDWGVDTQTEAKITRRPWLSNVG
                     KLISADDYPKEMLDQNQQSDVKARVLVDAAGRVTKCTSLSHFKLPQFNQVVCEKITRN
                     AKFEPAELADGTKVASYDVIDIKFKIAQ"
     gene            complement(1084..1269)
                     /locus_tag="VE968_02945"
     CDS             complement(1084..1269)
                     /locus_tag="VE968_02945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010236360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3008 family protein"
                     /protein_id="HZU50814.1"
                     /translation="MPAKSKAQQRAAGIALSVKEHEKPKSSLKGASKSMYESMSEKEL
                     KKMASTKRKGKPEHVGD"
     gene            complement(1319..1765)
                     /locus_tag="VE968_02950"
     CDS             complement(1319..1765)
                     /locus_tag="VE968_02950"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HZU50815.1"
                     /translation="MGKTLLLAAAPLLIAAAPSWQRQALSSAAPFIDKAYNEWTRAIV
                     SGDADVLSAPYAPNGIFIGPDGSEVRGRDAVRAMYAKSRGDLKIVKASIHSDGRAAHD
                     AGDVYEWGTASMTVEQGGKIRQAKGRYLTVWHRSGKRWLISHNIAF"
     gene            complement(1825..2940)
                     /locus_tag="VE968_02955"
     CDS             complement(1825..2940)
                     /locus_tag="VE968_02955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008600898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HZU50816.1"
                     /translation="MSLHDPKRTDVNVAIVGVGNCASSLIQGIAHYSNGGANEQIGLS
                     HWDLGGYRPKDLKIVAAWDIDRRKVGRDVADAIFAPPNCTTLFCDHVAPTGTRVRMGA
                     VFDGIAEHMANFPDERTFMLADEQREPSQADVVDVLRETNTDVMINYLPVGSQKATEF
                     YAECALEARVAFVNCIPVFIGSDQVWAERFEDAGVPVIGDDIKSQLGATIVHRVLTDL
                     FKKRGVKLDRTYQLNTGGNTDFLNMLERARLASKKISKTEAVQSVAKHRLDPDDIHVG
                     PSDYVAWQNDNKVCFLRMEGQLFGGVPMNLELRLSVEDSPNSAGVAIDLIRCARLAKD
                     RGIGGPIHAAASAFCKHPPRQLPDDEAFVELERFIRG"
BASE COUNT          560 a          927 c          952 g          595 t
ORIGIN      
        1 catcgccatc aacaaggacg aggaagcgcc gatcttccag gtcgcggaca tcggcctcgt
       61 cggcgacctg ttcaaaatcg tgcccgagct gacggagaag ctctgaccct agacctcgcg
      121 atcgggttct cttagcctgc gtgagctcgg ggagaggggt gtaatgcgtc taggtgcgtt
      181 tctggcgtgc gccgccactg cgccactgat catggctgcg gcccagccgg tgcggcttca
      241 gccatcaagt ccgtgggtcg tcgattacgg ggacgagagc tgtcatctca tccgaacctt
      301 cggcgaaggt gactcggcga cgacgctgat gttcgaaggc tattcccccg aaaaggtcga
      361 catgctgctc atcggggccc cgcttcgaac caattacgac gaagtctcgg cgcggtttct
      421 gcctgttcag aaaaaccccc aaaatggtga ggtcgtacaa tccgcaaccg ggaagccagc
      481 aatctttttc tctcgcatcg acctactgcc cgacgaggcg gaggcaaagg tggatgcgca
      541 actgcgacaa cttgctgcgt atcctcacgt ccggccgccg gcgaccagtc tatccgacaa
      601 gctcgagctg caatcgcagc gacaggaatt cgcagcgagc actgccgagc ttgagattga
      661 tgaacgtgca ggcgaacacg tgattataga aaccgggtcg cttggacagg cgatcaaggc
      721 attcgatcag tgcatgcagg attcgctcca ggattggggc gtggatacgc agacggaggc
      781 aaaaattacc agacggccgt ggctgtctaa cgtcggcaag ctcatcagcg cggacgatta
      841 tccgaaagaa atgctcgacc agaaccagca atccgacgtg aaggcgcggg tgctggttga
      901 cgcagcgggt cgcgtgacca agtgcacaag cctgagccat ttcaagctcc cgcagttcaa
      961 ccaagtcgtc tgcgagaaga ttacccggaa cgcgaaattt gagccggcgg agctcgccga
     1021 tggaacgaag gtggcgagct atgatgtcat cgacattaag ttcaagatcg ctcagtaacg
     1081 tggctaatcg ccgacgtgct cgggcttacc cttgcgcttg gtcgacgcca tcttcttgag
     1141 ctctttctcg ctcatcgatt catacatgct cttggacgcg cccttgagcg aactcttcgg
     1201 cttctcatgt tccttgaccg agagcgcgat gccggcggcg cgctgctgag ctttcgattt
     1261 tgcaggcatt tccagtctcc tcttgcggtg aaacgccgga gcgcgacgat cgcttcgctc
     1321 agaaggcaat attgtgcgaa atcaaccagc gcttgccgct gcggtgccaa acggtgaggt
     1381 agcggccctt ggcctgccgg atcttgccgc cctgctcgac ggtcatggac gccgtgcccc
     1441 attcgtacac gtcgccggca tcatgcgcgg cgcgtccgtc gctgtggatg cttgccttga
     1501 cgatcttcag gtcgccgcgc gattttgcgt acatcgcgcg cacggcgtct ctgccccgca
     1561 cctccgaccc gtccggcccg atgaagatcc cgttgggcgc atagggggcg ctgagcacgt
     1621 cggcgtcccc gctgacgatc gctcgggtcc actcattgta cgccttgtcg atgaagggcg
     1681 cagctgacga gagcgcctgc ctctgccacg acggagcggc cgcaatgagc agcggcgctg
     1741 cggccaataa caacgtttta cccatcgctc gacctcttcg gttatcgccc ggaggttggc
     1801 tgccgaacgg gagagctcaa gcacctatcc gcgaatgaag cgctccagtt cgacgaacgc
     1861 ctcgtcgtcg ggcagctgac gtggcggatg cttgcagaat gccgacgcag ccgcgtggat
     1921 cgggccgccg atgccgcggt ctttggcaag gcgagcgcag cggatcaggt cgatggcgac
     1981 gcccgcgctg ttgggcgaat cctcgaccga caggcggagc tcgaggttca tcggaacgcc
     2041 gccaaacagc tggccctcca tccggaggaa gcagaccttg ttgtcgttct gccaggcgac
     2101 atagtcgctc gggccgacgt ggatgtcgtc gggatcgagc cggtgcttgg cgacggactg
     2161 caccgcttcg gtcttgctga tcttcttcga cgcgagccgt gcgcgctcaa gcatgttgag
     2221 gaagtccgtg ttgccgcccg tgttgagctg ataggtgcgg tccagcttga cgccgcgctt
     2281 cttgaacaaa tcggtgagca cgcggtgcac gatcgtcgcg ccgagctgcg acttgatgtc
     2341 gtcgccgatg accgggactc cggcgtcttc gaagcgctcg gcccagactt ggtcgctacc
     2401 gatgaacacg gggatgcagt tgacgaacgc gacacgcgct tcgagcgcgc attcggcgta
     2461 gaattccgta gccttctgcg atccgaccgg cagatagttg atcatcacgt cggtgttcgt
     2521 ttcgcggagc acgtcgacga cgtccgcctg gctcggctcg cgctgttcgt ccgcgagcat
     2581 gaacgtccgc tcgtcgggga aattcgccat atgctcggca attccgtcga acaccgcgcc
     2641 catgcgcacg cgcgtgccag tcggcgcgac atgatcgcag aagagggtgg tgcaattggg
     2701 cggggcgaag atcgcgtcgg cgacgtcgcg gccgaccttg cgcctgtcga tgtcccacgc
     2761 ggcgacgatc ttgaggtcct tcgggcgata gccgccgagg tcccagtgcg agaggccgat
     2821 ctgctcgttg gcgccgccgt tcgaataatg cgcgatcccc tggatcagcg aactcgcgca
     2881 attcccgacg ccaacgatgg ccacattgac gtcagtgcgc ttggggtcat gcaggctcat
     2941 tcggcggcta ctctcacttg ggaccgaggc gcgtagcgct cgatcatgcg tccgcaaaag
     3001 tcggcgaaca tcgccgggtc tttcgggggg ctcg
//
LOCUS       DASRBJ010000104         3841 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_416702,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000104 DASRBJ010000000
VERSION     DASRBJ010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3841
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_416702"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..348
                     /locus_tag="VE968_02960"
     CDS             <1..348
                     /locus_tag="VE968_02960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HZU50817.1"
                     /translation="VLAGSVAYAVAEMFGRPASLDSKPLKARLFYGTIAATTLAGALL
                     QSVGVNAVQALYWSAVVNGVLAAPLMALMMLIVTNRRAMGHLILAPGAAILGWCATAL
                     MAVATILFFASLA"
     gene            complement(350..2470)
                     /locus_tag="VE968_02965"
     CDS             complement(350..2470)
                     /locus_tag="VE968_02965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HZU50818.1"
                     /translation="MRVGLIILSIAAAASGLGAVSAATSDDPYLWLEDVSSPKALQWV
                     EAHNAKSTAVLEADPRYARFYKQALDIAQAKDRIPVGEFIGGQVYNFWQDEDHVRGLW
                     RRTTPESYATGNPSWETVLDLDALARSEKANWVWKGADCARPAERRCLINLSDGGEDA
                     VTIREFDLPTKSFVKHGFYLPKGKQRVAWEDENTLLVSRAWRKGELGRTGYPYIAKRL
                     RRGEPLARAVEVYRGSPKDGGYGVSPFVLRDGQNRSISLIERPLDTFNHETFVLTPKG
                     ARRVAMPGKSDLTDLVDGRIIIHNREDWKVGNESFPAGSVLAVDLARLKADPVHLKPT
                     IVYAPAAREALQSVSSSKDILLVDILDNVRGRTLAYRPQPHGGWTHMTLPLPENSTVD
                     VTSTSNTDDRALISVTNFLTPPSLWLADGSTGAAREIMQQPAKFDASNLVAEQREAVS
                     SDGTRIPYFLVHRRDMKLDGNNPTLLYAYGGFEISETPTYSAVTGKLWLENGGVFALA
                     NIRGGGEFGPSWHEAGIGTKRQIIYDDFAAVAKDLIATHVTSPRRLGIRGGSNGGLLM
                     GVEFTEHPELWHAVVIDVPLLDMIRISKIAAGASWEGEYGSVDDPAVRAFWEKTSPYQ
                     NLHAGTHYPTPFIFTTTKDDRVGPQHARKFAARMEELGLPFYYYENTEGGHAAGANLR
                     QTAHTNALEMTYLTRKLMDPVEPK"
     gene            complement(2568..3284)
                     /locus_tag="VE968_02970"
     CDS             complement(2568..3284)
                     /locus_tag="VE968_02970"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HZU50819.1"
                     /translation="MRATARGHGGLGAGLVGGIAGALLTAALLLFATPQMLSTKIVRE
                     GLLSDPKILSETIDALHDAQYAPVIAANRAAIETPFASSWKGARKPDVTLVEFFDYAC
                     PYCKASNPSVDRLLKEDQGLRVVYRELPILGPDSVTAARLSLEASKIGKFAQFHDTLW
                     QSGRPAPDTNAKAAAAAGISAVPVTDAGIENELQRNMKLASELGATGTPLFVVGNRVL
                     NGAVGYDMLKEAIAEARQKA"
     gene            complement(3290..>3841)
                     /locus_tag="VE968_02975"
     CDS             complement(3290..>3841)
                     /locus_tag="VE968_02975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZU50820.1"
                     /translation="AYHMGGYPDKANAEADALLAKDPHDPFFLELKGQILLEGGKPKE
                     AIAPLREATERSGKMPLIAAMLGHALVATEDPKNYPEAKLVLKEAVNKDNQDPFAWYQ
                     LGIIYEAEGDPGRAALATAERSNLENNPKLAFASAQMAMKAIPPNTPDYLRAQDIEMV
                     SRNVLAKKDKRYRDDKEEKERMQ"
BASE COUNT          693 a         1158 c         1136 g          854 t
ORIGIN      
        1 gttcttgccg gctccgtggc ctatgccgtt gccgagatgt ttggccgacc ggcaagcctc
       61 gactccaagc ctctcaaggc aagactcttc tatgggacta ttgccgcgac cacgctcgcc
      121 ggcgcgctgc tccagtccgt cggtgtaaac gccgtccagg cgctttattg gagtgccgtt
      181 gtcaacggcg tcctcgctgc acccctgatg gcgctgatga tgctcatcgt tactaatcgg
      241 cgagcgatgg ggcatctcat acttgctcca ggagctgcaa tcctcggctg gtgcgcgacg
      301 gcccttatgg ccgtcgcgac gatccttttc ttcgcttctc tcgcctgatc tacttcggct
      361 cgaccgggtc catgagcttt cgagtgagat aggtcatctc gagcgcgttc gtgtgcgcgg
      421 tttgcctgag gttcgctccg gcagcatgac cgccttcagt gttttcataa taatagaagg
      481 gcagacccag ctcttccatt cgtgccgcga acttgcgtgc gtgctgcggc ccgacgcgat
      541 catccttggt ggtcgtgaag atgaacggtg tcgggtagtg cgtgccggca tggaggttct
      601 ggtagggcga cgtcttctcc cagaatgcgc gaaccgcggg atcatcgacg ctgccatatt
      661 cgccttccca ggatgcgccg gctgcaatct tcgagatccg gatcatgtcg agcagcggca
      721 catcgatgac aaccgcgtgc cacaactcgg gatgctcggt gaattcaacg cccatgagga
      781 gaccgccgtt cgatccgccg cggatcccga gcctgcgtgg actggtcacg tgcgtcgcaa
      841 tcagatcctt cgcaacggca gcaaagtcgt cgtagatgat ctgccgcttc gttccgatcc
      901 cggcttcgtg ccaactgggc ccgaactctc caccgccgcg aatgttcgcg agtgcgaaga
      961 cgccgccatt ctcaagccaa agctttccag tgacggctga ataggtcggg gtctcgctga
     1021 tctcgaaccc accgtaggca taaagcagtg tcggattgtt tccgtcgagc ttcatgtcgc
     1081 gccggtggac caggaagtag gggatccttg tgccgtcgct cgagacagct tcccgttgct
     1141 cggcgacaag gttcgacgca tcgaacttcg cgggctgctg catgatctcg cgggcagcac
     1201 cggtcgatcc atccgcgagc cacaaggaag gcggcgtcag gaagttcgtc accgaaatta
     1261 gcgcacggtc gtccgtattg ctggtcgagg tcacgtcaac cgtcgagttc tccggcaatg
     1321 gcagcgtcat atgggtccag ccgccgtgcg gttgtggcct ataagcgaga gtacggccgc
     1381 gcacgttgtc gagaatgtcg acaagcagga tgtctttcga agatgagacg ctctggagtg
     1441 cttcgcgagc cgcgggagcg taaacgatcg tcggcttaag atgcaccgga tcggccttga
     1501 gcctcgcaag atcgaccgcc agcaccgaac cggcggggaa actctcgttg ccgactttcc
     1561 agtcttcgcg attgtgaatg atgatgcgtc cgtcgacgag gtccgtaaga tccgactttc
     1621 ccggcatcgc aacgcgacga gcgcccttgg gcgtcagcac gaatgtctcg tgattgaagg
     1681 tgtcgagcgg ccgctcgatc agtgaaatgc ttcggttttg gccgtcacgc aggacgaacg
     1741 ggcttacgcc atagccgccg tccttggggc ttcccctgta gacttccacc gctcgtgcga
     1801 gcggctcgcc gcgtcgcaac cgcttggcaa tgtacgggta gcccgtacga ccaagttcac
     1861 ccttcctcca cgcgcgcgat acgaggagcg tattctcatc ttcccacgcg acacgctgtt
     1921 ttcccttggg aaggtagaaa ccgtgtttca cgaacgattt ggtcggaagg tcgaattcac
     1981 ggatcgttac agcgtcttcg ccgccgtcgg agagattaat gaggcagcgg cgttcggcgg
     2041 gacgcgcaca atccgcgccc ttccagaccc agttggcttt ctccgatctt gcaagtgcgt
     2101 cgagatcgag aactgtctcc cacgaagggt tgcccgtcgc atagctttcg ggcgttgtac
     2161 gacgccagag ccctcggaca tggtcctcat cctgccagaa attgtaaacc tggccgccga
     2221 tgaattcacc gaccgggatg cggtctttcg cctgcgcgat atccagggcc tgcttgtaaa
     2281 agcgggcgta gcgaggatcg gcctcaagca cggccgtcga ctttgcatta tgtgcttcca
     2341 cccactggag cgccttgggt gacgaaacgt cctcgagcca aaggtaggga tcatcgcttg
     2401 tcgcggcgct gacggcgcca agtccactag ctgccgctgc aatcgacaat ataatgagcc
     2461 ctacacgcat ggacgccctc cctcatcgac gactactcag ccgcgaaagc cacagcagtc
     2521 aaggagaggc ttattttgca agcggtcggc tgatgcgagg cgtcagctca cgccttctga
     2581 cgtgcttcgg caatcgcttc cttcagcatg tcgtagccga cagctccgtt cagcacccgg
     2641 tttccaacca cgaatagagg cgttccagtc gcgccaagct cgcttgcaag cttcatgttg
     2701 cgctgcagtt cgttttcgat tccagcgtcg gtgaccggga ccgcgctaat gccagcggcg
     2761 gcggcggcct tcgcgttcgt atcgggcgcg ggtcgtccgg attgccacaa ggtatcgtgg
     2821 aactgcgcga atttcccaat cttcgaagct tccagcgata gccgagcggc agtcacgctg
     2881 tccggcccga gtatcggaag ttcgcggtag acgacgcgga ggccttggtc ttccttcaaa
     2941 agccggtcga cggatgggtt gctcgccttg cagtagggac aggcgtaatc gaagaactcg
     3001 accaaggtaa cgtcgggctt tcttgctcct ttccatgagc tcgcaaaagg cgtttcgatg
     3061 gccgcgcgat ttgccgcgat gacgggtgca tattgagcat cgtgcaacgc atcgatcgtc
     3121 tcgctcagga tcttgggatc ggaaagcagt ccctcccgca caatcttcgt gcttaacatt
     3181 tgaggtgttg caaagagcaa cagggctgct gtcagcagag ccccggcaat ccctccgacg
     3241 aggccggcgc caagtccgcc gtggccacgg gccgtggccc tcatgtcagt cactgcattc
     3301 gctctttctc ttctttatcg tcgcgatatc tcttgtcttt cttcgcgagc acatttcgcg
     3361 acaccatctc gatgtcctgg gcgcggaggt agtccggtgt attgggcggg atcgccttca
     3421 tcgccatctg cgcgctcgca aaggcaagct tcggattgtt ttcaaggttg ctgcgctcag
     3481 cagtggcgag tgctgcgcgg ccgggatctc cctccgcttc gtagattatt ccgagctgat
     3541 accaggcgaa gggatcctga ttatccttgt tcaccgcttc tttgagaacg agtttggcct
     3601 ccggatagtt cttggggtcc tcggtcgcga ccagtgcatg accaagcatt gcggcaatga
     3661 gcggcatctt gcccgagcgc tcggtagctt ccctgagcgg cgcgatcgct tccttgggtt
     3721 tgccgccttc gagcagtatc tgccccttga gctcgaggaa gaatggatca tgcggatcct
     3781 tggcgagtaa cgcgtccgcc tcggcgtttg ccttatcggg atagccaccc atgtgatagg
     3841 c
//
LOCUS       DASRBJ010000105         2825 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_571069,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000105 DASRBJ010000000
VERSION     DASRBJ010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2825
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_571069"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2067
                     /locus_tag="VE968_02980"
     CDS             <1..2067
                     /locus_tag="VE968_02980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016896 - RNA exonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HZU50821.1"
                     /translation="KSGGVPKVTVLRVQSIDEHGNAWGVPEQWHAEGSPPRLRIRERA
                     KGGALGIGDRVLARTEEHPNGYVAHAMKKLARAAELVLGVVRGEGDRYWLSPVDKRER
                     RELVIADMGEAEAGDLVLCEISGRPPRLSARVEAVLGDPFAPRSFSLIAIHKHGLRAE
                     FSRDAIEEARRAGKMPLVDREDLTHLPIVAIDPRDARDHDDAIWAETDGEGGWNAIVA
                     IADVSYYVRPGSELDREARSRGNSVYFPDRVVPMLPEELSAGICSLKEGEDRAALACH
                     LKIDARGAIKSWRFSRARVRIAANIAYEDAQDAIDAAAQERIDVASPVCSMPDLERRV
                     PEELVERALKPLWACWRALFMARHKREPLELDLPERRVMLDEKGRITSIAARDRLDAH
                     RLVEDFMIAANVAAARALEAKKAPVMYRVHEPPSREKLTALKDYLATFGIEFALGQVI
                     KPSTFNRIIERLGNSDGREEIMEQLLRTQMQARYTPERLGHFGLALSSYAHFTSPIRR
                     YADLLVHRSLVTAYKLGDGGMAPGDAEHLERIGEQISMLERRAMEAERETVDRYVAAF
                     LADQVGQLVECRITGVQPFGFFATVDDLGGDGLLLAKDLGREYFRYDEAARTLVGDET
                     GETYRIGQKLTLRLADANPITGALQFQLPEGSYGGRSAAPRRDRVRVSGKRGRPPNIR
                     HSTRRR"
     gene            2224..2496
                     /locus_tag="VE968_02985"
     CDS             2224..2496
                     /locus_tag="VE968_02985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50822.1"
                     /translation="MHRMMLLPFAALIVTATPGSSNPPSIARQIAPADEQQQGNPSAG
                     GGAAPGAVSLQDKKICRQLPSSYSRLRNRACLTAKEWRMVEDDLSH"
     gene            2606..>2825
                     /locus_tag="VE968_02990"
     CDS             2606..>2825
                     /locus_tag="VE968_02990"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HZU50823.1"
                     /translation="MAYKIAIIVGSLREASLNRKMARAICRIPGDDLDCSIVEIGDLP
                     LYNQDLDSEPPSEWQRFRREVSSADGILF"
BASE COUNT          565 a          825 c          888 g          547 t
ORIGIN      
        1 aagagtggtg gagtacccaa ggttaccgtg ctgcgggtcc agtccattga tgagcacgga
       61 aacgcgtggg gagtccccga acaatggcat gccgagggct cgccgccgcg cctgcgaatt
      121 cgagaacgcg cgaagggagg cgcgttgggc attggcgacc gcgttcttgc gcgcactgaa
      181 gagcatccaa acgggtatgt agcgcatgcg atgaaaaagc tcgcgcgtgc cgctgagctg
      241 gtccttggcg tggtacgtgg cgaaggcgac cgatattggc tttctccggt cgacaagcgg
      301 gagcgacgcg aacttgtcat tgccgacatg ggtgaagccg aagcgggcga cctcgtgctt
      361 tgcgagatca gcggccgccc accgcgccta tctgcaaggg tggaagcagt tctcggcgat
      421 ccattcgcgc cgaggagctt cagcctcatt gccattcata agcatggcct tcgtgccgag
      481 ttcagtcgcg atgcaatcga ggaggctcgc cgcgcgggca agatgccgct cgtcgatcga
      541 gaggacctca cgcatttacc tattgtcgca attgatccac gcgatgctcg cgatcatgac
      601 gatgccatct gggctgaaac agatggggaa gggggctgga atgcgatcgt cgcgattgcc
      661 gatgtaagct actatgtccg accgggctcc gagcttgatc gggaggcgcg ttcgagagga
      721 aacagtgtct acttccccga ccgcgttgtg ccgatgctcc ccgaagaatt gtccgctggc
      781 atctgctcgc tcaaggaagg cgaggaccgc gccgcgctag cgtgtcatct gaagatcgac
      841 gcacgcggcg cgatcaagag ctggcgcttt agccgcgcac gcgtgcgaat cgccgcaaac
      901 atcgcctatg aggatgccca ggacgcgatt gacgcggcgg cgcaagaacg catcgacgtc
      961 gcatcgccgg tctgttcgat gcccgacctc gagcgacgtg tgcccgagga actcgtcgaa
     1021 agggcgctga agccactctg ggcctgctgg cgcgcattgt tcatggcgcg tcacaaacgc
     1081 gagccgttgg agctcgattt gcccgagagg cgggtgatgc tcgacgagaa ggggcgcatc
     1141 acgtcaatcg ccgcgcgcga tcgcctcgat gcacatcggc tcgtcgagga cttcatgatc
     1201 gccgcgaatg tcgcggctgc gcgcgcactc gaagctaaga aggcgccggt catgtatagg
     1261 gttcacgaac cccccagtcg cgaaaagctg accgcgctca aggattatct tgcgacattc
     1321 ggaatagaat ttgcgctcgg ccaagtgatc aagccgagca cattcaaccg gataatcgag
     1381 cgacttggaa atagcgatgg ccgtgaggag atcatggagc agctgcttcg cacgcagatg
     1441 caggcacgct acacacccga acggcttgga catttcggtc tcgccctttc gagctatgct
     1501 cacttcacat cgcccattcg acgttacgcc gacctccttg tccatcgctc gctagtgacc
     1561 gcctacaagc ttggtgacgg gggtatggcg ccgggtgatg cagaacatct cgagcgcatc
     1621 ggcgaacaga tctcgatgct cgagcggcga gcgatggaag ccgagcgcga aacagtcgac
     1681 cggtacgtcg cggcgttcct tgccgaccag gtcggccaac ttgtcgagtg ccggattacc
     1741 ggtgtgcaac cgttcggctt ttttgcgacc gttgacgacc ttggcggcga tggcttgtta
     1801 ctcgccaagg atcttggtcg tgaatatttc cgctacgacg aagcagctcg gactctggtt
     1861 ggtgacgaga ccggcgaaac ttatcgcatt ggtcaaaagc tgaccttgcg acttgccgac
     1921 gcaaacccga tcactggcgc gctccagttt caattgcccg aaggaagcta tggcggtcgc
     1981 tcagcagcgc cacggcggga tcgtgtgaga gtttccggca aacgcggtcg gccgcccaac
     2041 attcgccatt cgactcgtcg ccggtgaatc cgcggctctg accgtcatcg ttcgacaaac
     2101 ggcgttcgtc gaagccattc ttcgaccaag ccgctttgcg agtctgctgg acgacaggcg
     2161 gcggatggct cgccgaggcg gcgcggctgt agcatcgctt tgcccaacac agggagatgt
     2221 acgatgcaca gaatgatgct cttgccgttc gctgccttaa tcgtcacggc gacgcccggc
     2281 tcatccaacc ctccgtcgat tgcaaggcag attgcgccgg ccgacgaaca gcagcagggg
     2341 aacccgagtg cgggtggtgg agcagcgcct ggcgctgtat cgcttcaaga taagaagata
     2401 tgccgccagc tcccgtcgag ctattcgcgg ctgcgcaatc gggcttgcct taccgcaaag
     2461 gagtggcgga tggtcgagga cgatctctcg cattgatcca gtgcgaaagg gcactcctgg
     2521 cctcgcgagg agtgcccctt cgacgaattc tcgaaacttt ccgctcgagc gcgtattggg
     2581 ctcgcatccg aactggagct gagccatggc ttacaaaatt gcgatcatcg tcggcagcct
     2641 tcgtgaagct agcctcaacc gcaagatggc gcgcgcgatc tgccgaattc cgggcgatga
     2701 tcttgattgc tcgatagtcg agattgggga tttgccgcta tacaaccagg atctcgacag
     2761 cgagccgccc agcgaatggc agcgcttccg acgggaggtt tcgagtgccg atggcatatt
     2821 gttcg
//
LOCUS       DASRBJ010000106        16399 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_265015,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000106 DASRBJ010000000
VERSION     DASRBJ010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 16399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16399
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265015"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            202..288
                     /locus_tag="VE968_02995"
     tRNA            202..288
                     /locus_tag="VE968_02995"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:236..238,aa:Leu,seq:cag)
     gene            489..1097
                     /locus_tag="VE968_03000"
     CDS             489..1097
                     /locus_tag="VE968_03000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007015800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HZU50824.1"
                     /translation="MKNTAGIKEVAASLREARAGKSLTQQELGRRVGLPQSHISKIEK
                     GDVDLKLSSLAEIARALDLEVKLVPRKALPAVEGAVRAHGPIAETSRAVATLNEQAQL
                     AQRIKTKFPDLAQVDAFQRAIRNIPSLNFDAATLKALEEALKPTQRLKKLLDAQDGPA
                     LLAKRLEAATAGLRNFRNLQVHTPLVETQRQLPAYRLENDDD"
     gene            1087..2304
                     /locus_tag="VE968_03005"
     CDS             1087..2304
                     /locus_tag="VE968_03005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013831409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HipA family
                     toxin"
                     /protein_id="HZU50825.1"
                     /translation="MMIEAASLDVNLAGTRIGSISRLDGDRSIFSFDDAYVQDEQRPV
                     LSLAYKDSFGALINQPRAYQTRIEPFFSNLLPEGTLRDYLARRAGVKAVREYQLLGQL
                     GVDLPGAVEVVPVGAEAIVEDDAGTSEAAKQTKHALRFSLAGVQLKFSAVKNQGKHGG
                     LTIPVSGSGGDWIIKLPSSRHPDVPENEFATMNLAAVLGIEVPETNLVSIDDVEGLPE
                     GIIRYGTSAYAIRRFDRSPQGAVHIEDFAQVFGVFADEKYDNASYRQILSVLAIETDE
                     RSVAEFIRRLTYSVLIGNGDMHLKNWSLVYPDGHHPTLSPAYDLVSTVPYIPEEESAL
                     KFHRSKEWRSFNYDALAIIADRAKVPSHLVVSTAKETVERFDDVWIREKSNLPFSRET
                     LAAIEKHRKSLAV"
     gene            complement(2458..3219)
                     /locus_tag="VE968_03010"
     CDS             complement(2458..3219)
                     /locus_tag="VE968_03010"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HZU50826.1"
                     /translation="MNDHLIPTTRRCFIGAAGAVFMTSAAVAHASEDLEKVTQALADA
                     LAPARVDIWSKWTHPDFVLTDENGERIERKQFLAEMRPLPAGASGTIKVAQFSARKFG
                     NLQVATYVLEELEHYHGEELHARYRQTDSWLRTSAGWRLIASQVIALRTDPTSVDLSA
                     KLWAQYVGRYQLPDGLTMDIEWNGNSATMRKGMASARSLKAELADLLFVPGEPRVRYL
                     VERRDGGEVARLIQRRESWDIVWKRLSATTIDRSE"
     gene            3438..4889
                     /locus_tag="VE968_03015"
     CDS             3438..4889
                     /locus_tag="VE968_03015"
                     /EC_number="3.2.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008714 - AMP nucleosidase activity
                     [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA];
                     GO_process: GO:0044209 - AMP salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AMP nucleosidase"
                     /protein_id="HZU50827.1"
                     /translation="MSRHLNAHEIVDQLAAIYDESVANLRRALSHYIADRTPPDIGSR
                     RTGAFAYPELRIDYAGKLQRSAPARAFARLNQAGAYATSVARPELFRDYLVDQLEHLS
                     RDYDVAISVGRSASEIPYAYVIENSGIEVGNISTSELSRFFPSNELVHLGDEIADGVW
                     INGENSSRPLALFDGPRTDFSLARLRHYTGTPPEHFQQFVLFTNYVRYVDEFVRVAID
                     TLRRDGSRFTGLSVPGAVYEPGELVNAEAEIAAGQWRRHQMPAYHLMAEGRTGITLVN
                     IGVGPSNAKTICDHVAVLRPEVWLMIGHCGGLRPSQTIGDYVLAHAYLRDDHVLDDML
                     PPEIPLPAIAEVQKALFDATTAITGEDEDSVKRRLRTGTVVTTDDRNWELRYAASALR
                     FNQSRAVAIDMESATVAAQGYRFRVPYGTLLCVSDKPLHGELKLPGQANAFYERAVSQ
                     HLRIGVEALKLLQREGEGLHSRKLRSFDEPPLR"
     gene            complement(5016..6731)
                     /locus_tag="VE968_03020"
     CDS             complement(5016..6731)
                     /locus_tag="VE968_03020"
                     /inference="COORDINATES: protein motif:HMM:NF014871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HZU50828.1"
                     /translation="MIRTFFALIITLAITACVSPIAPTRLGDGRTAAVPVEIQILAFN
                     DFHGNIETPPPVDVWDHDGTKQRIQTGGAAHLAAALAGLRVGHANTITVSAGDTIGAS
                     PLISANYLDEPTIDAMNLMHLEIGSVGNHEFDRGADELKRMQYGGCAKFTRRTPCAVE
                     KFGGAKFRYLAANVVQADGTTIFPATAIKRFDTPAGPITLGFIGETLKGTATLVTPSG
                     VRGLTFKDEADTANALVPMLKAEGADAIVLLIHQGGKTPQFTAGNACDGLTGEIIPIV
                     RRLDPAIATVISAHTHWAYICRGTPAEIGSGRLLTSAGKYGYFVTDVRLKFDPATHHL
                     ISQDARNIIVGNGQNGADAREQALVQRYASAVAPIANRIVGRLSAPAPAAADEAESPA
                     ADLIADSMLAATRAPDMGGAQLALLNATGVRVSLPAGAIRYADAFSMMPFGNNLVVMT
                     LTGAQLKAALEQQYAGALPPRGLRPHALATSAGFSYTVDMHRAAGDRVIEARLSGTVI
                     SPDRRYRVVVNNYLAAGGDGLSAFTAGTDVTDRNIIDLDALVDWIAPGRDPPAANRIR
                     LFGVN"
     gene            complement(6728..7585)
                     /locus_tag="VE968_03025"
     CDS             complement(6728..7585)
                     /locus_tag="VE968_03025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010188479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1/P1 nuclease"
                     /protein_id="HZU50829.1"
                     /translation="MHSRLSMIVVAVVAIIPSPALAWGKTGHRVVAAIADSALSGLAR
                     AEIAQILGPGESLDEAANWPDEMRSAPGDFWQKQSPPWHYVTLNGDVYEHAPPEGDAL
                     EALERFTKILQDPSASRADKQLALRFVVHIVGDLHQPLHVGKCCDRGGNDVKVTWFGK
                     PTNLHSVWDSALVDDEQLSFTELAAKLERHTSPQEIVRWWDVNPRDWIAESAQIRDSV
                     YPAQSAPAGGKDSSGAPQAVPNLSYAYAFKFTPIMEQRLSQGGIRLAAYLDAIFAEAR
                     RLNTKSAPK"
     gene            7611..8078
                     /gene="cdd"
                     /locus_tag="VE968_03030"
     CDS             7611..8078
                     /gene="cdd"
                     /locus_tag="VE968_03030"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004126 - cytidine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0008655 - pyrimidine-containing compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HZU50830.1"
                     /translation="MTGACPVKPIRDKRMTDEQLIFLARSAAGKAYAPYSNFHVGCAV
                     ESVDGEIATGANMENACYRLGLCAEQSALTAAQHSFGLDKIARIAVVGGTDSIACTPC
                     GGCRQAILEAAQLSRQDLPILCGSGDGSKLERYTISDLLPSGFGPANLNVKPA"
     gene            complement(8065..9012)
                     /locus_tag="VE968_03035"
     CDS             complement(8065..9012)
                     /locus_tag="VE968_03035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate and iron-dependent oxygenase
                     domain-containing protein"
                     /protein_id="HZU50831.1"
                     /translation="MTTSTADNIASVSLKDAECDPEAFARKLGNSFEEYGFAILSDHG
                     IPQQLIDDAEAKAKAFFALPEEVKRKYLVPGAGGARGYTPFGIETAKGHKAHDLKEFW
                     HVGRDLPKDHKFRDHMPDNLWPAEVHGFKETFLELFATFDRTGLKVLKAIARYLNIDE
                     DYFEDAVRDGNSVLRALHYPPQTEPTGEHIRAGAHEDINAITLLLGAEEAGLELLTRD
                     GRWIPVSPERGELVINIGDMLQRLTNGKLRSTSHRVVNPTPERASSARYSMPFFLHFR
                     SDFLIEALPQTVGPAEQPKWPPITANDYLQERLREIKLV"
     gene            complement(9041..10288)
                     /locus_tag="VE968_03040"
     CDS             complement(9041..10288)
                     /locus_tag="VE968_03040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011415152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside transporter C-terminal
                     domain-containing protein"
                     /protein_id="HZU50832.1"
                     /translation="MNQKLLGIAGIIVILGIAFALSTNRRAIRIRVVGAAFLLQAAIA
                     FLVLYTDWGRAGIQTLSTGVGNLLGYATQGTEFLFGPSSANPLAHTFAIAALPVIIFF
                     ASLVAILYYLGIMQRVVRWVGGAIGWVTGISRVESLSAAANIFVGQSESPLVVRPYLA
                     ALPPSRLFTVMCVGMAGVAGTILAAYASLLGASYLPYLLAAAFMSAPGGILMAKMIMP
                     DDPADSDTVEDSKVDVAETFEEGVKPANIIMAAAQGAQTGVKLAVAVGAMVLAFVALV
                     ALANGLLGGLGNMLGARELSFQRIIGYCFAPVMFLIGIPWREAITAGGLFGTKLVLNE
                     FVAFIELGKMDASTLSLRSREIVTFALCGFANFSSIAIQMAVTGSLAPNQRPVIARLG
                     IRALLAGSLANLMSAALASLMLP"
     gene            complement(10310..10879)
                     /locus_tag="VE968_03045"
     CDS             complement(10310..10879)
                     /locus_tag="VE968_03045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HZU50833.1"
                     /translation="MKRLAVYCGSAPGNHSVFADSTRATAAAMVRRGVDLVYGGGRLG
                     LMGLIADSVLAGGAQVYGVIPAALVDLEVAHLGLTELYRVETMHERKAKMTDLADAFL
                     ALPGGIGTLDELFEAWSWNALGYHKKPFCLLNVDGYWNRMIEFIEHATQCGFLSRERR
                     HQLLVAETPDQALDLLDEAATAATQGMVW"
     gene            complement(10885..11901)
                     /locus_tag="VE968_03050"
     CDS             complement(10885..11901)
                     /locus_tag="VE968_03050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017670133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine kinase"
                     /protein_id="HZU50834.1"
                     /translation="MSMVRVASAPVISSKLDIVAIGDAIVDVIATADDAFIARHSLPK
                     GGMQLLTIDAADALYAAMGPAREISGGSAANSMAGAAALGLDAAFIGQVAADQLGAIF
                     AHDMTSLGVRFETPPIDSPPPTGRCLILVTPDAQRTMNTCPGASHELSPAALDPELIR
                     SASVTFLEGYLWGPERPRAAMLEAARIAHSAGRTVAFTLSESLCIGARRNGVLGMIEK
                     GTVDILFGNEQEIHHLVGCDDILDCIAALRPKVGTLVVTRGQHGSIGVENGETIEIPA
                     APVDRVVDTTGAGDLFAAGFLAARCRGQELRVCLEVGARAAAEVISHFGARPEADLKE
                     LAGL"
     gene            11952..12599
                     /locus_tag="VE968_03055"
     CDS             11952..12599
                     /locus_tag="VE968_03055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:1990397 - queuosine salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="queuosine precursor transporter"
                     /protein_id="HZU50835.1"
                     /translation="MTDKTRSVPFSLLLLSIFYGGMVCIAGVLGNKQVALGPLAVEAG
                     IFAFLLLVVTSSSVAELHGRATANRLVLMGFIPLVTSLVLSVIVLALPASPQMDPNRL
                     SAFETMMKGTPRIWLGGIFAYGVSTFLNVTIFSRLKAREGGRLLWLRAGIASVLSQVV
                     DTVIFITVAFYGAFPIGELLLGQMLAKVTLSAILVPPLVYLFVGLGRQLDRTDAE"
     gene            12733..16014
                     /locus_tag="VE968_03060"
     CDS             12733..16014
                     /locus_tag="VE968_03060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HZU50836.1"
                     /translation="MKKAFLLRSCAALFAPIAAGAMIATPAMAQETTSSISGTVMSKG
                     TPVPNAAVTITHVPSGTVARTTTSADGTFVASGLRVGGPYTVDIASTAGHTRVTDIYT
                     VAGQPYNLPVDIAPQAAQAPEIVVTASRIRGAGVIGTGPATVLTANDISKVASVNRDI
                     RDLMRRDPFATLDTSQSTGRQVTFAGVNPRFNRFTVDGVPITDSFGLNPDALPSRRGP
                     VPNDSIGEFETEVAPYDIREGFFQGGVINAILRSGTNHFQGTGFYTLSTDGLTGSHLK
                     PYITNPTGYVAQPKFKSQDFGVELSGPIIKDRLFFMVSAERVRANNPFNLATTSITPT
                     VFNQIVGIAKTKYGVDAGGTLTNVGDKDDRVVGRIDANITDKQRLSITGIYTKDQINT
                     LGFNTPTSESTVSNDYVKPDRLAAGVATLNSAWTDVLSTETRVMYKDYQSGQNPILAK
                     TALALVCSDPGSASAITVGNATQCSSNVTSLAIGPLGSAQTNILHTKTFDAQELVRLS
                     FGNHNVRLLYDYQHVSNYNLFIGQTANPGSTGISSGAYGAYYFDSIAAFQAGTAQEFG
                     YANATTGNPNDAAAIFSYATHTVGLQDDWKLMPNLTVTAGMRYDVYASSSRPLLNQAF
                     VAREGFSNTEFMDGRGLWQPRVGFDWKATRRFDLHGGVGVFGGGTPDVYIGNSFSSSG
                     VQPVLFSTATAGSPFLTNVSLTQIPAAATAALRGTQNAPVAAIDPNFKIPSEWRGSLS
                     GTYDFNLGPLGDHWILGGNVLVSKTREAILYRDGRDHPIVGPSALTPDGRQRYFDATP
                     ASQGGPSGNADTILGNTSRGRGYIGVVSLSKKWDFGLSTWASFTYQDVRDQAAVTSSI
                     ASSNYGNTAYYDANSGAYGHSNDEVRYSFKYDVDFDHAFFGDYRTRIDLFGETRIGSP
                     FSYTMQEASSPGGRGQVFGTAGNTSRFLFYVPTGPNDPLVTYDSAATAARIDQIINST
                     GLKNYRGKIAPRNAFNSKWFTKIDLHVEQEVPTFVGKSKISLFADIENLPNLINHHWG
                     EQLRNFFPYTDVVAKVSCVAKGANACAQYQYSAPSSDSFLADQLITVNGSSLYSIRIG
                     ARFSF"
     gene            16107..>16399
                     /locus_tag="VE968_03065"
     CDS             16107..>16399
                     /locus_tag="VE968_03065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HZU50837.1"
                     /translation="MPLYSLGERTPRLAVDAWIAPSADLIGDVRLGARASVWFGAVIR
                     ADNTAISIGDETNVQDCCLCHSDPGYPLTVGRRVTVGHQAILHGCTIADDCLVG"
BASE COUNT         3352 a         4979 c         4759 g         3309 t
ORIGIN      
        1 cgcgacacgc accctgacgc cgctcctgaa caggagctcg cagacgtagc ggccgatgaa
       61 cccggcgcct ccgaacaccg tgacaagctg ctctttccgc tcgatcataa gcatggcgcg
      121 atagccgccc ggttcctaga ttgacaaggc gaaaggagcg ctccacatgg cgcgccctac
      181 cactcattga cttgcttccg tgcccaggtg gcggaattgg tagacgcacc agcttcaggt
      241 gctggcgctc gcaagggcgt ggaggttcga gtcctctcct gggcaccact tgccgcctac
      301 gtcgcgtgag cctctggcga aaggtgtgct cgcgctttta ggcttcatcg gcagcattct
      361 tgagaatgta cggcgaacct catatctttc agcatatata ggccgacgtt tatctgcgcc
      421 gacatatacg ctgcttgaaa attcatacgc agaagcatat atcgctagta agatatatat
      481 aggaacctat gaaaaacacc gccggcatca aagaggttgc cgcctcccta cgagaggcga
      541 gagccggtaa gtccctcacg caacaggaac tcgggcgacg agttggccta ccgcagagcc
      601 acatctcgaa aatcgaaaag ggcgacgttg acctgaaatt gtcgagcctc gcggagatag
      661 ctcgagcgct cgatttggaa gtcaaactcg tgcctcgaaa ggccttaccc gccgttgaag
      721 gcgcagtgcg cgcccacgga cccatcgctg agactagccg tgctgtggcc acattgaacg
      781 agcaggcgca gcttgcgcaa cgcatcaaga caaagttccc cgaccttgcg caggttgatg
      841 cgttccaacg agccatccgg aacatccctt cgctcaactt tgatgccgcc acactgaagg
      901 cgctcgagga ggcgctgaag ccgacccaga ggctcaagaa gctcttggat gcgcaagacg
      961 gcccagctct ccttgccaag cgcctcgagg cagcgacagc cggtttgcgc aatttccgca
     1021 atctccaagt ccacacgccg ctcgtggaaa cccaacgcca actccccgcc taccggctcg
     1081 agaatgatga tgattgaggc cgcatctctc gacgtcaatc ttgccggcac gcgcatcggg
     1141 agcatctcca ggctcgatgg cgacagaagc attttttctt ttgacgacgc ctatgtccaa
     1201 gacgagcaac ggccggtcct ttcgctcgcc tacaaggact cgtttggcgc tctcatcaat
     1261 caacctcgcg cgtaccagac tagaatcgaa ccgttctttt ccaacttgct cccagaaggg
     1321 acgctgcgcg attatctggc ccgacgggca ggcgtgaagg ccgttcgtga ataccagttg
     1381 ctcggccaat tgggagtgga cttgcccggg gcagttgagg tcgtgcctgt gggggcagag
     1441 gcaatcgtcg aagatgacgc tggcacaagc gaagcggcca agcagaccaa acacgcactt
     1501 cggttctctc tagcgggcgt gcagctgaag ttctcggcag tgaaaaatca ggggaagcac
     1561 ggcggactga ctatcccggt aagcgggtcc ggtggcgact ggattatcaa gctaccgtcg
     1621 tcgcgccatc cagacgttcc cgaaaatgag ttcgcgacaa tgaacctcgc ggcggttctc
     1681 ggtatcgagg tgccagagac caacctcgta tccatcgatg atgtcgaagg ccttcccgag
     1741 ggcatcattc ggtatggaac gtcggcttac gctatccggc gcttcgaccg ttcccctcaa
     1801 ggcgccgtcc acatcgagga cttcgctcaa gtgttcggcg tattcgcgga cgagaagtac
     1861 gacaatgcca gctatcgcca gatactttca gtgcttgcca tcgaaacgga tgaacgcagc
     1921 gtcgcggaat tcattcgccg attgacctat tctgtcttaa tcgggaacgg cgatatgcac
     1981 ctcaagaact ggtcgttggt atatcccgac ggccatcatc ctacgctgtc tccggcctac
     2041 gatttggtct ccacggttcc ctatattccg gaggaggagt cagcgcttaa gttccatcgc
     2101 tcgaaagagt ggcggtcgtt taattacgac gcgctcgcca tcattgcgga tcgggcgaag
     2161 gttccgagcc atcttgttgt ctcaaccgcg aaggaaaccg ttgagcggtt cgatgatgtt
     2221 tggatacgtg aaaagagcaa cttgcccttt tccagagaaa cccttgcggc catcgaaaag
     2281 catcgcaaga gcttggcggt ataagcctaa gcggcgcgcg cgcgcagaat gaccaaacaa
     2341 caccctgtct cgcgctacaa agacacgcta caaaagccgc tgtcgcggcg gcgcggtttt
     2401 tgctgttttt cgtcgttttc gagtttagcc tgccctatcc tctcctgggc accacgccta
     2461 ctctgaacgg tcgatagtcg tcgcagatag acgcttccat acgatatccc aggattctcg
     2521 gcgctggata aggcgtgcga cttcgccgcc gtctcgacgt tcaaccaggt agcggaccct
     2581 gggctcgcct gggacaaaaa ggaggtccgc gagctccgcc ttgagcgacc gagccgaagc
     2641 cattcccttg cgcatggttg ccgagttccc gttccactct atgtccatcg tgaggccatc
     2701 gggcagttgg taacgaccga catattgcgc ccagagcttt gccgataggt cgacggacgt
     2761 aggatccgtc cgaagcgcga tgacttggga tgcaattagg cgccaaccag cgctcgtgcg
     2821 aagccagctg tcggtttggc gatagcgggc gtgaagctcc tccccatgat aatgttcaag
     2881 ctcttcgaga acgtaggtcg ccacctggag attaccgaat tttcgcgcgg aaaactgagc
     2941 caccttgatg gttcccgatg ctccggcggg taatggtcgc atctcggcca gaaactgctt
     3001 tcgttcgatg cgctcgccgt tctcgtccgt gagtacaaag tcggggtggg tccatttcga
     3061 ccatatgtcg acgcgcgcgg gcgcaagcgc atcagcaagt gcctgggtca ccttttcgag
     3121 gtcctcagac gcatgcgcca ctgcggcgct cgtcatgaat acagcaccgg cggctccgat
     3181 gaagcatcgc cgcgtcgtcg ggattaaatg atcgttcatt gcttaccccc tcgccgccgg
     3241 gagccgcaag aacggcggcc gatcgacttg cgcgctccat tgcgcttctt tgcggcgtcg
     3301 gtcaggaata cctttgtcga gcatttccaa agtggttgat agctcagagc cagcaccagc
     3361 ggtcgcaatg ttcgtgaaca tcgcccctcc cagcgtctgc acttgcatca ggtgcaattg
     3421 atcgcttagt gcggcccatg tcgcgtcact tgaacgccca cgagatcgtc gaccagttgg
     3481 cggccattta cgacgaatcg gttgcaaatc ttcggcgcgc gctttcccac tacatcgctg
     3541 atcgcacgcc gcccgacata ggctcacgtc ggaccggcgc tttcgcctac ccggaactgc
     3601 gcatcgacta cgccggcaag ctgcagcggt ccgcaccagc gcgagcattt gcgcggctta
     3661 accaggccgg tgcttatgcg acgagcgtcg ctcgacccga gctgtttcgc gactatctgg
     3721 tggatcaact cgagcacctt agccgcgatt atgatgtggc gatttcggtc ggccgatccg
     3781 caagcgagat cccctacgct tacgtaatcg agaatagcgg gatcgaggtc ggtaacatct
     3841 cgaccagcga actttcgcgt ttcttccctt ctaacgaact ggtccatctt ggcgacgaaa
     3901 ttgccgacgg tgtctggatt aatggcgaaa acagcagtcg gccacttgca ctgttcgacg
     3961 gtccgaggac cgacttcagt ctggcgcggc tgcgtcatta tactggcacg ccgcccgagc
     4021 acttccagca gttcgttctg ttcacaaact atgttcgcta tgtcgacgag ttcgtacgcg
     4081 tcgcaatcga tacactgcgg cgagacggtt cgcgctttac ggggctgtcg gtgcccggcg
     4141 ccgtgtacga acctggcgag cttgtgaacg cggaagccga aatcgccgcg ggccagtggc
     4201 ggcgccacca aatgccggct taccacctga tggcagaagg ccgcaccgga attaccttgg
     4261 tcaatatcgg cgttggaccg tcaaacgcga aaaccatctg cgaccatgtc gcggttctcc
     4321 gtcccgaggt gtggttgatg atcggccact gcgggggtct tcgtccaagc cagacgatcg
     4381 gtgactatgt tctggcgcac gcctatctgc gcgacgacca tgtgctcgac gacatgctgc
     4441 cgcctgaaat tcctttgccc gcaatcgcgg aagttcaaaa ggctctgttc gacgcgacga
     4501 ccgcgatcac cggagaggac gaagacagcg tgaagcgccg gctaaggacc ggcaccgtgg
     4561 tgacgaccga cgatcgaaac tgggagctcc gctatgctgc ctcggcgcta cgtttcaatc
     4621 aaagccgggc agtcgcaatc gacatggagt cggcaaccgt cgcggctcaa ggctaccgtt
     4681 ttcgcgtacc atacggcacc ttgctctgcg tctccgacaa gccattgcat ggtgaactga
     4741 agcttccggg acaagcaaac gcattttacg aacgcgccgt cagccagcat ttgcgtattg
     4801 gtgtcgaggc cctcaaactc ttgcagcgcg aaggtgaagg acttcacagc cgaaagttgc
     4861 ggagcttcga tgagccgccg ctgcgttgat cgacagccgc tgtgacgcgc gcattgcagc
     4921 agcgggttat gctggaatga caggatcgca acattcctgg agcagcttgc gaaccccatt
     4981 tccgccgaca attggagccc gcgcgagcgg ccctgtcagt tgaccccgaa caggcgaatc
     5041 cgatttgcgg cgggcgggtc ccggccaggg gcgatccaat caacgagtgc gtcgaggtcg
     5101 atgatgttac ggtcggtgac gtcggtacca gccgtaaatg cgctcaatcc gtcgccgcca
     5161 gctgccaaat agttattcac aacgacgcgg tagcggcgat cggggctgat tactgtaccg
     5221 ctgagcctcg cctcaatgac gcggtcgccc gcggcgcgat gcatatcgac agtgtagctg
     5281 aaacctgccg acgtcgcgag cgcgtgcggg cgtagccctc gggggggaag cgcaccggca
     5341 tattgctgct caagggccgc tttcagctgc gctccggtca gcgtcatgac caccaaattg
     5401 ttgccgaacg gcatcatcga gaacgcatcg gcataacgga tagcgccggc tggaagagat
     5461 acgcgcacac ccgtcgcatt gagcagcgca agttgtgcac cgcccatgtc tggtgcacgc
     5521 gtggcggcaa gcattgaatc cgcaatgaga tcagcggcag gactctctgc ctcgtccgca
     5581 gccgccggag ccggagccga caatcggcca acaatgcgat tggcaattgg cgcaacggcg
     5641 gaagcatagc gctgaactag agcctgctct cgagcgtccg cgccgttctg cccgttcccg
     5701 acaatgatgt tccgtgcatc ctggctgata aggtgatgag tcgcaggatc gaacttcaat
     5761 cgaacatcgg ttacgaaata tccgtatttc ccggcgctcg tgaggaggcg cccgcttccg
     5821 atttctgctg gcgtgccgcg acagatgtat gcccagtgcg tgtgcgccga aatcacggtc
     5881 gcaattgccg gatcaagtcg gcggacgatt ggaataattt cgccggtgag cccatcgcat
     5941 gcgtttccag cggtgaactg aggtgtcttt ccaccttggt ggatcagcag gacaatcgca
     6001 tcggcgcctt cagccttgag catcggcaca agggcattcg ccgtgtcggc ctcatcttta
     6061 aatgtgagtc cgcggacacc cgaaggcgtt acgagagtcg ctgtgccctt cagggtctcg
     6121 ccaatgaagc caagggtgat tggcccggcg ggagtgtcaa accgcttgat tgcagttgcg
     6181 gggaaaatgg tcgttccgtc cgcctgcact acgttagccg caaggtagcg gaatttggcc
     6241 cctccgaatt tctcaacggc acagggcgtc cgtcgcgtga atttcgcgca gccgccatat
     6301 tgcattcgct tcagctcgtc ggctccgcgg tcgaactcgt ggttcccgac cgagccgatc
     6361 tcgagatgca tgaggttcat cgcatcgatc gttggttcat cgaggtaatt ggcagagatc
     6421 agtggcgaag cgccgatggt gtcgccagca gataccgtga tcgtattggc atgaccgaca
     6481 cgcaagcccg cgagagctgc cgcaagatgg gctgcaccgc ccgtttgaat ccgctgcttc
     6541 gtgccgtcgt gatcccacac gtcgactgga ggaggcgttt ctatgttgcc gtgaaaatcg
     6601 ttgaaggcga gaatctgtat ttcgaccgga accgccgcag ttcggccgtc accgagccgc
     6661 gttggcgcaa taggcgagac gcaagctgtg attgctagcg tgatgatgag agcgaaaaag
     6721 gtgcggatca tttgggcgct gatttggtgt tgagccggcg cgcttcagcg aaaatcgcat
     6781 ccaggtaggc tgccaagcga atgccgcctt ggctcagccg ctgctccatg atcggcgtga
     6841 atttgaaggc ataagcgtag gagaggttcg gcactgcttg cggagcacca ctcgagtcct
     6901 tccctcccgc cggagccgat tgcgcgggat aaaccgaatc ccggatctgc gcactttcgg
     6961 cgatccaatc cctgggattt acgtcccacc atcttacgat ctcttgcggg ctcgtgtgtc
     7021 tctcgagctt cgcggcaagc tcggtgaacg aaagctgctc gtcgtcgacg agtgccgaat
     7081 cccaaacgga atgaagattt gtcggcttgc caaaccaggt gacctttacg tcattgccac
     7141 cccggtcaca gcatttcccg acgtgcagcg gctggtgaag gtcaccgacg atgtgcacga
     7201 cgaagcgaag tgcgagctgc ttgtcggccc ggctggcgct gggatcttgc aatatctttg
     7261 taaagcgctc gagcgcttca agcgcatcgc cctcgggagg tgcatgttca tagacatcac
     7321 cgttgagcgt cacatagtgc caaggcggcg attgtttctg ccagaagtcg ccaggagcgg
     7381 agcgcatctc gtccggccag ttcgccgctt cgtccaggct ctcgccgggg ccaaggatct
     7441 gcgcgatctc cgctcgcgcg agaccgctca gcgcagaatc ggcaattgca gcaacgaccc
     7501 ggtgcccagt cttgccccag gcaagcgccg gtgaaggaat gattgcaacc acggcaacaa
     7561 cgatcattga aaggcgcgaa tgcatccgac tcgatactct cgttctcgac atgactggcg
     7621 catgccccgt gaagccgatt agagacaaga ggatgacaga cgaacaactg atcttcctcg
     7681 cacgatccgc cgcgggaaaa gcctatgcgc cttactcaaa cttccacgtc ggctgtgccg
     7741 ttgaatcggt tgatggcgag atcgcaaccg gcgcaaacat ggaaaatgcc tgctaccggc
     7801 tcggcctctg tgctgaacaa agcgcgctca cggccgcaca gcacagcttc ggcctcgaca
     7861 agatcgcgcg aattgctgtg gtgggtggca cggactcgat cgcctgtacc ccctgcggcg
     7921 gttgtcgaca ggcaatcctc gaagcagcac agctaagtcg ccaagacttg ccaatcttgt
     7981 gtggaagcgg cgacggatcc aagctcgaac gctacacgat cagcgatcta ctgccttccg
     8041 gcttcggccc cgctaacctc aacgtcaaac cagcttaatc tcgcgaaggc gctcctgcag
     8101 ataatcattg gcggtgatcg gaggccactt gggctgctcc gcggggccaa ccgtttgtgg
     8161 cagtgcttcg atgaggaaat cggatcgaaa gtgaagaaaa aacggcatcg aatagcgagc
     8221 gctgctggcg cgctcgggag tcgggttaac cacccgatgt gatgtcgaac gcaatttgcc
     8281 gttggtaagg cgctgcagca tgtcgccgat attgatcacg agctcgccgc gctcgggcga
     8341 cacggggatc catcggccat cgcgcgttag aagctcgagg ccggcctctt cggcgccgag
     8401 cagtagcgta attgcattaa tgtcctcatg cgcgccggcc cttatatgct ctccggtcgg
     8461 ttccgtctgc ggcggataat gaagcgcacg aagcacggaa ttgccgtctc gcaccgcatc
     8521 ctcgaaatag tcctcgtcga tgttgagata gcgggcaatt gccttgagta ccttaaggcc
     8581 ggtccggtca aatgtcgcaa aaagctcaag aaacgtctcc ttgaacccat gaacttccgc
     8641 aggccataga ttatcgggca tgtggtcccg gaatttgtga tctttcggca agtcgcggcc
     8701 gacgtgccag aactccttca ggtcatgcgc cttgtggccc ttggcggtct caatgccgaa
     8761 cggcgtataa ccccgagccc caccagcgcc cggaacaaga tacttgcgct taacttcctc
     8821 gggcagtgcg aagaatgcct tcgcctttgc ctccgcgtcg tcaatcagtt gctggggaat
     8881 gccgtgatcg gacaggatcg cgaaaccata ttcctcgaag ctgttgccaa gcttccgcgc
     8941 gaaagcctcc ggatcgcact ccgcatcctt gagtgagacg gacgcgatat tatcggcggt
     9001 acttgttgtc atggcttaca tcgtaacaga tgaactcgcg tcatggcagc atcagcgaag
     9061 caagcgccgc gctcatgaga tttgcaaggc tgccggcgag cagtgctcgg attcccagcc
     9121 ttgcgataac tggccgttga ttgggtgcaa ggctccccgt tacggccatc tgaatggcga
     9181 tcgagctgaa attcgcgaaa ccgcaaagtg caaatgtgac gatctcgcga ctgcgcaagc
     9241 tgagagtcga ggcatccatc ttgccgagct cgatgaaggc aacgaactcg ttgaggacaa
     9301 gctttgtccc aaacaagcct cccgcggtaa tggcttcgcg ccacggaatg ccgatcagga
     9361 acatgacggg tgcaaagcaa tagccgatga tacgctggaa gctgagctcc cttgcgccga
     9421 gcatgttccc aagcccgccg agcaggccat tcgcaagcgc gacaagagca acaaaggcaa
     9481 ggaccattgc accgacggca actgcaagct tgacgccggt ctgcgctccc tgcgccgctg
     9541 ccatgatgat gttggcgggc ttcacgcctt cctcgaacgt ctcggcgaca tcgacctttg
     9601 aatcttcgac ggtgtcgctg tcggcgggat cgtcgggcat gatcattttc gccatgagaa
     9661 tgccaccggg cgccgacatg aaggctgccg caagaaggta aggaaggtag ctcgcgccaa
     9721 gcaggctcgc gtaagccgct aagatggtgc cggcgacacc ggccatgccg acacacatga
     9781 ctgtgaacag cctcgatggc ggcaatgctg cgagatacgg gcgcacgacg agcggcgatt
     9841 ccgattgccc gacgaagata tttgccgcag cggagagcga ttcaacgcgg ctgatgcctg
     9901 tcacccagcc aatcgcgcca ccgacccacc gcacgacgcg ctgcatgatt ccaagatagt
     9961 agagtatcgc aacgaggctc gcgaagaaga taatgaccgg aagagctgca atggcgaagg
    10021 tatgcgcaag ggggttggca gaactcggac cgaacaggaa ctcggttcct tgggtcgcat
    10081 agccgaggag attgccgacg ccggttgaga gggtctgaat gcctgcgcgc ccccagtccg
    10141 tatagaggac aaggaacgca atggcggcct ggagcaggaa tgcggcgccg acgacgcgaa
    10201 ttcgaattgc tcgccggttt gtcgacagcg cgaaggcgat gccgaggatg acaattatcc
    10261 cggcgatgcc gagcagcttt tgattcactg agcccctccc gcgggccgac taccagacca
    10321 tcccctgcgt agcggctgtt gcagcttcgt ccagcaaatc cagcgcctgg tcgggcgtct
    10381 cagcgacgag tagctggtgt cggcgctcgc gcgacaagaa gccgcactgc gtcgcatgtt
    10441 cgatgaattc gatcatgcga ttccagtaac cgtcgacatt cagcagacag aacggcttct
    10501 tgtgataacc gagcgcattc caactccaag cttcgaagag ttcatcgagc gtgccgatgc
    10561 cgccgggcaa ggcaagaaag gcatccgcga gatccgtcat cttggccttc cgctcgtgca
    10621 tggtttcgac ccgatacagt tcggtcaagc cgaggtgggc aacttcgaga tcgaccagag
    10681 cggccgggat gacgccgtaa acctgcgccc ctccggcaag cacgctgtcg gcgataaggc
    10741 ccataaggcc caggcgtccg ccgccataaa cgaggtctac gccgcggcgc accattgctg
    10801 ctgcggtcgc tcgcgtcgaa tccgcgaaga cagaatgatt gcccggtgct gacccacaat
    10861 agacagcaag tcgtttcaca tgcttcaaag ccccgctagc tcctttaagt cggcttccgg
    10921 tcgtgctccg aaatgcgaaa tcacctcggc cgcggcacgt gcgccaactt caaggcagac
    10981 gcgaagctcc tgtccgcgac atcgggcggc gaggaatccc gccgcaaaca agtcgccggc
    11041 gccggtcgtg tcgacaacac ggtccactgg cgctgcgggt atttcaatcg tttcgccatt
    11101 ctcaacgccg attgagccgt gctgtcctcg cgtaaccacg agcgtgccga ctttggggcg
    11161 aagagccgcg atgcaatcca aaatgtcgtc gcagccgacg agatggtgaa tttcctgttc
    11221 attgccgaac aatatgtcga ccgttccctt ttcaatcatg ccgagcacgc cattgcgacg
    11281 agcgccgatg cagaggcttt cagacaaggt gaaggcgacc gttcgtccgg cggagtgcgc
    11341 gatccgggcc gcttcgagca ttgcggcgcg cggtcgctcg ggaccccaga ggtagccttc
    11401 gagaaaggtc acgcttgcag agcggatgag ctccgggtca agcgccgcgg ggctaagctc
    11461 gtggcttgcg ccggggcatg tattcatcgt ccgctgtgca tccggcgtga cgaggatcag
    11521 gcaccgaccg gtaggcggcg gcgaatcgat tggcggcgtt tcaaaccgga caccgagcga
    11581 agtcatgtca tgcgcaaaaa tggcaccaag ttgatcggcc gcaacctgcc caatgaatgc
    11641 cgcgtcaagg ccgagcgcgg cagctcccgc catgctgttc gctgcagagc cgccgctgat
    11701 ctcccgtgcc gggcccatgg cggcgtagag agcatcggcg gcatcgatgg tgagcagctg
    11761 catgccaccc tttggcaagg agtgacgcgc aatgaacgca tcgtcggccg tcgcaatgac
    11821 gtcgacgatc gcgtcaccga tcgcgactat gtcgagcttg gaggagatca cgggcgcgct
    11881 cgctacccgc accatcgaca ttgggtcaac gctggttgcg cgccacgatg gaaccgttac
    11941 gcatcagggt catgaccgac aagacgcgct ccgtcccgtt ttcactgctc ctgctttcga
    12001 ttttttacgg agggatggtg tgcattgctg gcgttctcgg gaacaagcag gtcgcacttg
    12061 gcccccttgc tgtcgaagcg ggtattttcg ccttcttgct actggtggtt acctcgagct
    12121 cggtcgccga gcttcacggt cgcgctacag ccaatcggct cgtcctcatg gggttcatcc
    12181 cgctcgtcac gtcgctcgtt ctaagcgtga tcgtgctcgc cttgcccgcc tctccgcaga
    12241 tggatcccaa tcggctgtcg gcgttcgaga cgatgatgaa gggtacccca cggatctggc
    12301 ttggtggcat cttcgcctat ggcgtttcga cgttcctcaa cgtcacgatc ttcagccgcc
    12361 tcaaggcacg agaaggaggc cgtcttcttt ggcttcgggc cggaatcgca agcgttctta
    12421 gccaggtggt cgataccgtc attttcatca cggtcgcctt ctacggcgcg ttcccgatcg
    12481 gcgagcttct ccttgggcag atgctggcga aggtgacgct ttcggcaatc ctggtaccgc
    12541 ctctggtcta tctctttgtt ggactcggac gccagctcga caggaccgat gccgaatagc
    12601 agttgcaaaa gtgcaacgct tcccaggaat cattgcgagg cggccgactg ctgtaacaac
    12661 cgtgccttaa tcggctaata gccggaccgg ggaatcacca acaatccatt gttttgcggg
    12721 ggagtagttt ccgtgaagaa agcctttctg ctgcgctcgt gcgcggctct ttttgcgcca
    12781 atcgccgccg gggcgatgat tgccactcca gcaatggcgc aggagaccac gtcgtcgatc
    12841 agcggcaccg ttatgtccaa gggaacgcca gttccgaacg cagcggttac gatcacccac
    12901 gttccctcgg ggacggttgc gaggaccacg acgtccgcgg acggcacatt cgtggcttcc
    12961 ggtctgcggg tcggcggccc atatactgtc gatatcgcga gcaccgccgg tcacacacgc
    13021 gtcaccgaca tctatacggt tgctggacaa ccctacaact tgcccgtcga cattgcccca
    13081 caggccgcgc aggcgccgga gatcgtcgtc accgcatcgc gcatcagagg cgctggcgtc
    13141 atcgggactg gccccgcgac cgttctcact gccaacgaca tttcgaaggt tgcttcagtg
    13201 aaccgcgata ttcgcgacct gatgcgccgt gatccgttcg cgacactcga cacgtcgcag
    13261 tcgacgggtc gccaggtaac cttcgccggc gtgaacccgc gctttaatcg cttcaccgtt
    13321 gacggcgtcc ccatcacgga cagcttcggg ctcaatcccg acgcactccc ctcgcgccgc
    13381 ggtcccgtgc cgaacgattc gatcggcgaa ttcgagacgg aagtggcacc ctatgacatc
    13441 cgcgagggct tctttcaggg tggtgtcatc aacgccattc tgcgctccgg caccaatcac
    13501 ttccagggca ctggattcta cactctgtcg accgacggtc tgacgggctc gcatctcaag
    13561 ccctacatca cgaatcccac cggatacgtc gctcaaccga agttcaagag ccaggatttc
    13621 ggtgtcgaac tctcgggtcc cattattaag gaccgcctgt tcttcatggt ttcagccgag
    13681 cgtgttcgag cgaacaaccc gttcaatctc gcaacgacct cgattactcc gaccgtgttc
    13741 aaccagatcg tcggcatcgc caagaccaaa tatggggtcg atgccggcgg tacgctcacg
    13801 aacgtgggcg acaaggacga ccgcgtcgtt ggccgtatcg atgcgaatat taccgacaag
    13861 cagcgactct cgatcacggg catctacacg aaggaccaga tcaacacgct cggcttcaac
    13921 acgccgacct ctgaatcaac agtttcgaac gattacgtta agccggaccg ccttgccgcg
    13981 ggcgtcgcga cgttgaactc ggcctggacc gatgttcttt cgaccgagac ccgcgtcatg
    14041 tacaaggatt accagagcgg gcagaacccg atccttgcca agaccgctct tgccttggtc
    14101 tgtagtgacc ctggctcggc gtcggcgatt accgttggca atgcaaccca atgctcatcg
    14161 aacgtcacct ctcttgcgat cgggccgctc ggctccgcac agacgaatat tctccacacg
    14221 aagactttcg atgcacagga attggtccgc ctctcctttg gcaaccacaa cgtgcggttg
    14281 ctctacgact accagcacgt ctccaactat aatctgttca ttggtcagac ggcgaaccct
    14341 ggcagcaccg gcatctcgtc gggcgcttat ggcgcttatt actttgactc gattgcagcc
    14401 ttccaggcag gaacggcgca ggagtttggg tatgccaacg cgaccacggg caatccgaac
    14461 gacgctgccg ccattttcag ctatgcgacc catactgtcg ggctccagga tgactggaag
    14521 ctcatgccga atctcaccgt cacggccggg atgcggtacg atgtctatgc gagcagcagc
    14581 cgtccgctcc tgaaccaggc gttcgttgca cgcgaaggct tctcgaacac cgaattcatg
    14641 gatggccgtg gcctgtggca gccccgcgtc ggatttgact ggaaagcgac gcgacgcttt
    14701 gatcttcacg gcggcgtcgg cgtcttcggc ggcggcacgc cagacgtcta tatcggcaac
    14761 agcttctcat cgagcggcgt gcagccggtc ttgttcagca cggcgactgc cggcagcccg
    14821 ttcctgacga atgtcagcct cacgcagatc ccggcggctg cgaccgcagc gcttcggggt
    14881 acgcagaacg caccggtcgc ggcaatcgac cccaatttca agatcccgtc cgagtggcgt
    14941 ggctcgctct ccggtacgta tgatttcaat ctgggtccgc ttggtgatca ctggatcttg
    15001 ggtggaaacg ttctcgtctc caagacccga gaagcaatcc tttaccgcga cggacgcgat
    15061 cacccgatcg tcggtccaag cgcgcttacg cccgacggcc gccagcgtta cttcgatgca
    15121 acgccggcaa gccagggcgg cccttctggt aacgccgaca cgatacttgg caacacctcg
    15181 cgcggccgcg gctatatcgg agtcgtcagc ctcagcaaga aatgggactt cggtctcagc
    15241 acgtgggcga gcttcaccta ccaggacgtg cgtgatcaag cggcggtcac ttcctcgatc
    15301 gcgtcgtcaa actacggcaa taccgcttat tacgacgcaa acagcggcgc ctacggccat
    15361 tcgaacgacg aggttcgcta ctcgttcaag tatgacgttg atttcgatca tgcattcttc
    15421 ggcgattacc ggacgcgtat tgacctgttc ggtgaaactc ggatcggatc gcccttcagc
    15481 tacacgatgc aggaggcctc gagccctggc ggtaggggcc aggtgttcgg tacagccggc
    15541 aacacgagcc gcttcttgtt ttacgtaccg acgggcccca atgatccgct tgtcacctac
    15601 gacagcgccg cgacggccgc gcggatcgac cagatcatca attcgacggg gctcaagaac
    15661 taccgaggca agatagcgcc gcggaatgcc ttcaactcaa agtggttcac gaaaatcgat
    15721 cttcacgtcg agcaggaagt tccgacgttc gtcgggaagt ccaagatctc gctgttcgcc
    15781 gacatcgaga acctgcccaa cctcatcaat caccattggg gcgagcagct gcggaacttc
    15841 ttcccctaca ccgatgtggt ggcaaaggtg tcatgcgttg caaagggcgc caatgcgtgc
    15901 gcgcaatatc aatattcggc gccaagcagc gattcgttcc ttgctgacca gctgatcacc
    15961 gtgaacggct cgtcgctcta ctcgatccgc attggtgcgc ggttcagttt ctaacccacg
    16021 ctcttgagta aagtgaggcc gggtgggaca gcgtccttcc cggccttatc ttttgcgcaa
    16081 tcttggagaa cgctaaggcc cgctcaatgc cgctttacag cctcggtgag cgcacgcctc
    16141 ggcttgctgt cgacgcgtgg atcgctccgt cggccgatct catcggcgat gtgcgtctcg
    16201 gcgcgcgcgc aagtgtctgg ttcggcgcgg tcattcgggc agacaacacg gcgatttcaa
    16261 ttggcgatga aaccaatgtt caggattgct gcctttgcca ttccgaccct ggatacccgc
    16321 tcactgtagg tcggcgagtg acggttgggc atcaggcgat cctccatggc tgcacgatcg
    16381 cggacgattg cctggttgg
//
LOCUS       DASRBJ010000107         3339 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_315708,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000107 DASRBJ010000000
VERSION     DASRBJ010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3339
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315708"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..910)
                     /locus_tag="VE968_03070"
     CDS             complement(<1..910)
                     /locus_tag="VE968_03070"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HZU50838.1"
                     /translation="MGKKPIEVAALKHKGAKRLNNPTAEFESVMEAQEKAPVQIAYER
                     RNRDLDPQLVWRGKDEQDWSDLVVQAPVIFTQEKVHPKAIIDDLRRETKRRAEGKAEA
                     QPNLFADFNGLRDADAVTEFYRHALHWSNRMIVGDSLAVMASLAEREGLRGQVQCIYI
                     DPPYGIKFNSNFQWSTTSRDVKDGDKAQITREPEQVRAFRDTWRDGIHSYLSYLRDRL
                     TVARDLLHESGSIFVQIGDENVHRVRAVLDEVFGDENLISLICLRKTGGQETSAIPNV
                     SDYILWYARAADKVKYRQLYYRKELGV"
     gene            complement(1008..1400)
                     /locus_tag="VE968_03075"
     CDS             complement(1008..1400)
                     /locus_tag="VE968_03075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HZU50839.1"
                     /translation="MEHEPIPPEIEAIARSAVDAGLKVHTALGPGLLESAYEHCLAYE
                     LGQRGVEVRQQVALPIVYDGVKLDAGYRIDLLLVGAIVIEVKSVDALAPIHQAQLLTY
                     LKLSGCRLGFLMNFNVPLFKQGLKRMVL"
     gene            complement(1478..1693)
                     /locus_tag="VE968_03080"
     CDS             complement(1478..1693)
                     /locus_tag="VE968_03080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010408230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2283 domain-containing protein"
                     /protein_id="HZU50840.1"
                     /translation="MKLHYYPETDSLYIELKGEPGAETREVAAGLNVDLNAQGEVVGF
                     DIDQASRHLDLTTLETIALPLRQTRVA"
     gene            complement(1918..>3339)
                     /locus_tag="VE968_03085"
     CDS             complement(1918..>3339)
                     /locus_tag="VE968_03085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HZU50841.1"
                     /translation="LESGEALDKDFRAMAEDEIERFRRDILDRGGADAHDLMTGGEIS
                     DATLLREVMNTVGKKGRLGEQVRCVVSVSMLTEGWDANTVTHILGVRAFGTQLLCEQV
                     VGRGLRRQSYELNDDGLFNVEYADVLGIPFDFAAKPVIVKPAPPRETVRVHAVKPDRD
                     ALEIVFPRVESYRVEPPTERLEATFGPNHVLHLTPELVGPSVTKNQGIIGQSIDLTIA
                     HLKDMRSSTILFRLAQHLVTNKYRDFGEEPKLYLFGQLKRIARQWLEGGGLKCSGGTY
                     PAQILYPEILDMATEKIKAAITESLVGEKAVKAILDAYNPKGSTAFVNFTTSKTTRWQ
                     TDPRKCHVNWVICDSDWEAEFCRVAEAHPRVRAYVKNQNLGLEVPYLRGPTARKYLPD
                     FIVQIDDGRADPLNLIVEIKGFRGEDASAKAAAMNAYWIPGVNNLKKFGRWAFAEFNA
                     VYEIEAKFDKLIASFLAPAQAAQ"
BASE COUNT          618 a         1083 c          948 g          690 t
ORIGIN      
        1 cgaccccgag ctccttgcga tagtagagtt gccggtactt aactttgtcc gcggctctcg
       61 cataccagag gatgtaatcg gagacgttag gaatagccga cgtttcttgc cctcccgttt
      121 tccgaaggca aatcagagaa ataagatttt catccccaaa tacctcgtcc agcaccgccc
      181 gcacgcgatg cacgttttcg tcgccgatct ggacgaaaat cgatcccgat tcgtgcagca
      241 aatcgcgcgc aacggtaagc ctatcccgca gataggagag gtaagaatgt ataccatccc
      301 tccacgtatc ccgaaacgcc cgcacctgct ccggctcgcg cgtgatctgc gccttgtcgc
      361 cgtccttcac gtcgcgtgat gtcgtcgacc attgaaagtt cgagttgaac ttgatgccat
      421 agggcgggtc gatatagatg cattgcacct gcccgcgtaa accctcgcgc tcggcgaggc
      481 tcgccatcac ggcaagcgag tcgccgacga tcatccggtt cgaccagtgc aacgcgtggc
      541 gatagaactc ggtgacggcg tcggcgtctc ggaggccatt gaaatcggcg aagaggttcg
      601 gctgcgcctc cgcttttccc tccgcccgcc ttttcgtctc gcgccgcaga tcgtcgatga
      661 tcgccttggg atgcaccttc tcctgggtga agatcaccgg cgcctggacg acgaggtcgg
      721 accagtcctg ctcgtccttg ccgcgccaga cgagctgcgg gtcgagatcg cgattgcgcc
      781 gctcataggc gatctggacc ggcgcctttt cctgcgcctc catcacgctc tcgaactcgg
      841 ccgtcggatt gttgagccgc ttcgcgcctt tatgcttcag cgccgcgacc tcgatcggct
      901 tcttccccat acccctgctt ccttcgtatt ccttcgtgtc cttcgtgtct tcgtggtgaa
      961 atttcgcaat cagcaatttt caccacgaag acacaaagga cacgaagtca gagcaccatg
     1021 cgtttgagtc cctgcttgaa cagcgggacg ttgaaattca tcaggaagcc gagccggcag
     1081 ccggacagct tcagataggt gagcaattgc gcctgatgga tcggcgcgag cgcgtccacc
     1141 gacttcactt cgatcacgat cgcgccaacg agcaggagat cgatgcgata gccggcgtcg
     1201 agcttgacgc cgtcatagac gatcggcagc gcgacttgtt gacgaacttc gacgccgcgc
     1261 tggcccagct cgtacgctag acagtgctca tacgccgatt cgagaaggcc cgggcctaaa
     1321 gccgtatgca ccttcagccc tgcgtcaacc gcgctgcggg cgatagcttc aatttccggg
     1381 gggataggtt cgtgctccat aggtgctctc ttcgtgtcct tcgtgccttc gtggtgaaat
     1441 gtcaccacaa agacacgaag aacactaagt cttggcgtca cgccacacgc gtctggcgca
     1501 gcggcaaggc gatcgtctcc agcgtcgtca aatcgagatg gcgcgaggct tggtcgatgt
     1561 cgaagccgac cacctctcct tgcgcattca ggtccacatt cagaccggcc gccacctcgc
     1621 gcgtctccgc gccgggctcg cccttcagtt cgatatagag gctgtccgtc tcggggtaat
     1681 agtgaagctt catggctcgt cctttcggta gccgcggtcg aaaaaggcgt tatgaacggt
     1741 ttcgcgtccg atcgcctgcc acaaccctcc tcgtcatgcc cggccttgtg ccgggcatcc
     1801 acgcccatcc gccggcgcag acttggaaca tttggcgcgg ccgccgccgc gtggatggcc
     1861 gggacaagcc cggccatgac gccccacgtt gctgctcctc gaaatagcga gtggccttca
     1921 ttgtgccgcc tgcgctggcg ccaaaaaaga tgcgattagc ttgtcgaact tcgcttcgat
     1981 ctcatagacc gcgttgaact cggcgaacgc ccaacgcccg aatttcttaa gattgttcac
     2041 gcccggtatc caataagcgt tcatcgccgc ggccttcgcc gaagcgtcct cgccgcgaaa
     2101 gcccttgatc tcgacgatca gattgagcgg gtccgcccga ccgtcatcga tctggacgat
     2161 gaagtccggc aggtatttcc tcgccgtcgg gcccctcaga tacggaactt cgagcccgag
     2221 attctggttc ttgacatagg cgcgcacgcg cggatgcgcc tcggccacgc ggcagaactc
     2281 ggcctcccag tcgctgtcgc agatcaccca gttgacatgg cacttacgcg gatcggtctg
     2341 ccagcgcgtc gtcttcgacg tggtgaagtt cacaaaagcc gtcgacccct tgggattata
     2401 tgcgtcgaga atcgccttaa cggctttctc gccaaccaag ctttcggtga tcgccgcctt
     2461 gatcttctcc gtcgccatat cgagaatctc tgggtagaga atctgcgccg gataggtccc
     2521 gcccgagcat ttcagcccgc cgccctccag ccattgccgc gcgatccgct tcaactggcc
     2581 gaagagatac agtttcggct cctcgccgaa atcgcgatat ttgttggtga cgaggtgctg
     2641 cgccaagcgg aacaggatcg ttgaggaacg catatccttg agatgagcga tcgtcagatc
     2701 gatgctctgc ccgataatcc cctggttctt cgtcaccgat ggtccgacaa gctccggcgt
     2761 caggtgcagc acgtgattag gcccgaaggt cgcctcaagc cgctccgtcg gaggctccac
     2821 tcggtagctc tcgacacgcg ggaacacgat ctcgagcgcg tcgcgatcgg gcttaaccgc
     2881 gtggactcgc accgtctcgc gcggcggcgc gggtttgacg atgaccggct tggccgcgaa
     2941 gtcgaacgga atgccgagca cgtcggcata ttcgacattg aacaggccgt cgtcgttcag
     3001 ctcgtaggac tgccgccgca ggccgcgacc gacgacctgc tcgcagagaa gctgggtgcc
     3061 gaaagcgcgc acgccgagaa tgtgcgtgac cgtgttggcg tcccagcctt ccgtcagcat
     3121 cgacaccgag acgacgcagc ggacttgctc gccgagccgg cctttcttgc cgaccgtgtt
     3181 catcacctcg cgcaggagcg tggcgtcgct gatctcgccg cccgtcatca ggtcatgcgc
     3241 gtccgcgccg ccgcgatcga gaatgtcgcg gcggaaccgc tcgatctcgt cttcggccat
     3301 ggcgcggaaa tccttgtcca gcgcctcccc ggactcgag
//
LOCUS       DASRBJ010000108         2753 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_620467,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000108 DASRBJ010000000
VERSION     DASRBJ010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_620467"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            362..1063
                     /locus_tag="VE968_03090"
     CDS             362..1063
                     /locus_tag="VE968_03090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008995963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HZU50842.1"
                     /translation="MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYD
                     YDIILLDLNLPDMSGFEVLRSLRVSKVKTPILILSGLAGIEDKVKGLGFGADDYMTKP
                     FHKDELVARIHAIVRRSKGHAQSVINTGDLVVNLDTKTVEVAGQRVHLTGKEYQMLEL
                     LSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLRKKLANASNGKNYIETVWGRG
                     YVLREPSENEERIPA"
     gene            1262..2128
                     /locus_tag="VE968_03095"
     CDS             1262..2128
                     /locus_tag="VE968_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006022633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HZU50843.1"
                     /translation="MAPRAYWKGYLRLSLVSCPIQLFPATSEREKVRFHQLNRTTGNR
                     IRYRKVDAETGEEVAADDIVKAYEVSKGHYVEVEQDELDAVELESTRMIDIDQFVAKK
                     EIDELYIANPYYVVPDGEVGLQAFAVIREAIKKENMVALGRVVFTNREHVIALEPRSK
                     GLLGVTLRYPYEIRNEKDYFDDIPSESVPKDMLDLATHIVHSKAAHFKPENFEDRYES
                     ALKELIKRKQQGKPVEHAKPREPAKVIDLMEALRRSAGATGPARGTARAGATPRRPAK
                     KASRSPARRKAG"
     gene            complement(2161..2235)
                     /locus_tag="VE968_03100"
     tRNA            complement(2161..2235)
                     /locus_tag="VE968_03100"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2201..2203),aa:Val,seq:cac)
     gene            complement(2426..>2753)
                     /locus_tag="VE968_03105"
     CDS             complement(2426..>2753)
                     /locus_tag="VE968_03105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50844.1"
                     /translation="AELAKLKREAEENWANERVENALLRERINDVAAEVARLAAALQG
                     PDSTIEAILAAEAARERAGAPVPVTVHHDVELQPQAGSNLADRIRALQAQSATRLTGD
                     EPQTRN"
BASE COUNT          575 a          823 c          839 g          516 t
ORIGIN      
        1 cttagcctta cccgcgacat cacgaattta accgcttgtt tacccgggtc attaatcatt
       61 gcgtcatcgt ccacgggaca aggccgatca gtgactcgcc ccggctggac gagcggggcg
      121 aaaggccgac cggtttacgg actggggcat gaagccgacg cgtggtgaaa accgtctttc
      181 cggcaacgta ttatgccgat tcgggcgaga tgcctacggc gcgcttgcca gcgggaatca
      241 ggttttgtta accatgccgg catattgtcg aatcggtttg tcccaccgcg tttttgacgt
      301 ttggctcgcc gctcccgcgg cgcatcaaag ctagagcccg tgcggcgaga aggggacttc
      361 aatgcgcgtt ctgctgatcg aagacgacag tgcgaccgca caatcgatcg agctcatgct
      421 caaatccgag agcttcaacg tctacaccac cgatctcggt gaggaaggcg tcgatctcgg
      481 caaactctac gactacgaca tcatcctgct cgacctcaat ctgccggaca tgtccggctt
      541 cgaggtcttg cggtccttgc gcgtctcgaa ggtgaagacg ccgatcctga tcctctcggg
      601 gcttgccgga atcgaggata aggtgaaggg ccttgggttc ggcgccgacg attacatgac
      661 caagccgttc cacaaggacg aactcgtcgc gcgcatccat gcgatcgtgc gccgctccaa
      721 ggggcatgcg cagtcggtca tcaacaccgg cgatctggtc gtcaacctcg ataccaagac
      781 ggtcgaggta gccggccagc gcgtgcatct gaccggcaag gaatatcaga tgctcgaact
      841 gctctccttg cgcaaaggca cgacgctgac caaggagatg tttctcaatc acctctacgg
      901 cggcatggac gagccggaat tgaagatcat cgacgtgttc atctgcaagc tgcgcaagaa
      961 gctcgccaac gcatcgaacg gcaagaacta catcgagacc gtttggggac gcggctacgt
     1021 cctgcgcgag ccgagcgaga acgaggagcg cattccggcc tgagcgacgg tcacgtcata
     1081 ggacgatagt cacccagaca gactgcccta cacgcaggcg ccccaggctg cgtcaatccg
     1141 cccaaatttc caagccattg cgcaagagcc ccgaacgcaa agcgtccggg gctcgttgtt
     1201 tcggaacctg ccgtgcttcg gaccgttgtt gttggttgac ccctctgtat cggagttcgt
     1261 catggccccg cgtgcgtatt ggaagggcta tctgcggctg tcgctcgttt cctgtcccat
     1321 tcagctattt ccggccacca gtgagcgcga gaaggtgcga tttcaccagc tcaaccgcac
     1381 caccggcaac cgcatccgct atcgcaaggt cgatgctgaa actggggaag aggtcgcggc
     1441 cgacgacatc gtcaaagcat acgaggtgtc gaagggacat tacgtggaag ttgagcagga
     1501 cgaactcgac gctgtggagc tcgaaagcac gcgcatgatc gatatcgatc agttcgtcgc
     1561 gaaaaaagag atcgacgagc tctacattgc aaatccctat tacgtcgtgc cggacggcga
     1621 agtcggctta caggcattcg cagtcattcg cgaggcaatc aagaaagaga acatggtggc
     1681 gctcgggcga gtggttttca ccaatcggga acatgtgatc gcgctcgagc cgcgctcgaa
     1741 aggactgctc ggcgtgacgc tgcgctatcc ttacgagatc cgcaacgaga aagattactt
     1801 cgacgacatt ccgagcgaga gcgtaccgaa ggacatgctc gatctcgcca cccacatcgt
     1861 ccacagcaag gccgcccatt tcaagccgga gaattttgaa gatcgatacg agagtgcgct
     1921 gaaagaattg atcaagcgga agcaacaggg caagccggtg gagcacgcaa agccgcgcga
     1981 gccggcgaaa gtcatcgatt tgatggaagc tttgcggcga agcgccgggg cgacgggtcc
     2041 ggcgcgcggc acggcgcgag ctggtgcgac gcctcggcgg ccggccaaga aagcctcacg
     2101 tagtcctgcc cgtcgcaagg cgggttgacc attgcagcag caaattgatg ataagacagc
     2161 tggtgggcgg tgcagggatt gaacctgcga ccccacccgt gtgaagggtg tgctctcccg
     2221 ctgagctaac cgcccgcccc taccgtcgcg atataaagag cggctcggag cagtgtcaag
     2281 cgagcctgcc accaacgtca agctcacaat tcatggttgg ttcggaaccg cgtctcggcc
     2341 gcgagcggaa tgcggacgca ggtgaggctc gtttccgggc gccggacgac accttccaat
     2401 gtttccgaat cacgtgggag ggcgatcaat tccgggtctg cggctcgtca cccgtaagcc
     2461 gcgtcgcgct ctgcgcctga agggcgcgga tgcggtcggc aagattgctt ccggcttgcg
     2521 gctgcagctc gacgtcgtgg tgaaccgtca ccggtacagg cgcgccggcg cgctcgcgcg
     2581 cggcttcggc ggcaaggatt gcctcgatgg tcgagtcggg gccttgcagc gcagctgcta
     2641 gtcgcgctac ctccgcggcc acgtcgttga tacgctcgcg cagcagcgcg ttctcgacgc
     2701 gctcgttggc ccagttctcc tcggcttcgc gcttcaactt cgcaagctcg gcg
//
LOCUS       DASRBJ010000109         4032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_366270,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000109 DASRBJ010000000
VERSION     DASRBJ010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4032
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366270"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1231
                     /locus_tag="VE968_03110"
     CDS             <1..1231
                     /locus_tag="VE968_03110"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HZU50845.1"
                     /translation="MRPHSEKTGADRSAAPHLTAAHLKLAAISPAARKDIDYRLLDAR
                     LEQLMNKPAMVGLAVGVVENGRITFLKGYGETLHGSGDPVTPDTVFRWASCSKGLAAT
                     MVAKLAEQGKINLNAPVANYAPDLKLPAGNEYKATVGDLLSHRLGLYRDAYANKLEEG
                     QDPSFLRTSLAQLNAVCAPGTCWDYQNVAYDASSEMVSRITHMPYEEAVKRYLFNPIG
                     MSSGSVSMAGLEASRSWARPHSAGKRPWPMVDTYYKVPGAAGINSDIKDMALWMEAQM
                     GEMPDVIDAKVLDTIHAPYVVTPTERGRLRKFLERLGTAWYGYGWRSYDYAGHRIIGH
                     RGGIRGYRSLILFDPQKKSGVVALWNSDTWQPGGLEFEVMDMVYHLPFRDWLELNKNP
                     EQSIAAAESESDSGGPS"
     gene            complement(1228..1482)
                     /locus_tag="VE968_03115"
     CDS             complement(1228..1482)
                     /locus_tag="VE968_03115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50846.1"
                     /translation="MRHETVTIPAGNGIDWKGIGYLFSIIGALLLGAEAWPKPSDPSW
                     HLPALIAGIATTIIGFVVRYMAHLKQRREIERTKREAEQH"
     gene            1550..2056
                     /locus_tag="VE968_03120"
     CDS             1550..2056
                     /locus_tag="VE968_03120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007682600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HZU50847.1"
                     /translation="MASSKTQDAIALLKEDHRAVEKLFKDFEEAKGEGRKEKLARRIC
                     LELTVHTKIEEEIFYPACDGKIEEDKLKEAKVEHDAAKLLMAEIEAGSGASDDFFDAK
                     VKVLSEEIEHHVEEEEGELFPEVRKADLDLQSLGEKLAARKKELLKEYKDSGVPEPEL
                     QTMDEVSI"
     gene            complement(2264..3565)
                     /locus_tag="VE968_03125"
     CDS             complement(2264..3565)
                     /locus_tag="VE968_03125"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HZU50848.1"
                     /translation="MKIRMLAGVACAALTVLSVPSIAATNPELPTAPGFNFAADQAVN
                     SFYASRGGAPLWLRGGADSAAARELIGTLQRASLDGMPSGPTIATQAQALLARAQTGD
                     TNALESADRLLTSAWVQYVETLETPPTGMTYADRWVAPRRDSPATILAKTAAAPSLAS
                     YVRTVSEVNPLYAQLRDAAWTTMQSNGGELDPRVLASLDRARDIPPQGRYVMIDTAGA
                     RLYMIDDGQIVDSMKVAVGKADPSTQTPMLASTIYYATLNPYWHVSGEMVRSLIAKNV
                     LEQGMKYLKIHGYQILSPDGSGEILDPTKVNWHAVAAGEELVQVRQLPGPLNSMGRIK
                     FPFPNGSDIYLHDTPNKDLFAQDDRDVSHGCIRLEDAERFGRWLMGKDPQVASRDPEQ
                     NVLLPTPVPIYVTYLTAQARNGQLSFVDDIYGRDTEVAALR"
     gene            3765..>4032
                     /locus_tag="VE968_03130"
     CDS             3765..>4032
                     /locus_tag="VE968_03130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50849.1"
                     /translation="MVGKIDGGGLSGFGVAKEDVRPLAGTGGAAGPGTRAGEGQPSGE
                     GINVRGECVADEKASEVAREAAALGTDGDHDETPALEYGEGDRPN"
BASE COUNT          879 a         1129 c         1253 g          771 t
ORIGIN      
        1 gatgcggcct cattctgaaa aaactggcgc cgacagaagc gcagcgccgc atttgaccgc
       61 tgctcacctc aagcttgccg caatttctcc cgcggcacgc aaggatatcg actatcgtct
      121 gctcgacgcc cggctcgagc agttaatgaa caagccggca atggtcggcc ttgccgtggg
      181 agtggtcgaa aatggccgta tcaccttcct gaaaggctat ggcgagacgc tgcacggctc
      241 gggagatcca gtgacacccg ataccgtctt ccggtgggct tcttgttcga aagggctcgc
      301 tgcgacgatg gtcgcgaaac tcgccgagca gggcaagatc aacctcaatg cgccggtcgc
      361 gaattacgcg cccgacctca aattgcccgc tggaaacgaa tataaagcaa cggttggcga
      421 tcttctctcg catcgcctcg ggctttatcg cgacgcttat gcgaacaagc ttgaggaggg
      481 ccaggatcca agcttccttc gaacgagcct cgctcagcta aatgccgtct gcgcgcctgg
      541 tacgtgctgg gactatcaga acgtcgccta tgacgcctcg agcgaaatgg tgtcacgcat
      601 tacccacatg ccgtatgagg aagccgtaaa gcgatacctg ttcaacccga tcgggatgag
      661 cagcggaagc gtgtcgatgg cgggacttga agcaagccgc agctgggcaa gaccacatag
      721 cgcgggcaag cggccgtggc cgatggtgga tacttattac aaggttcctg gcgctgcggg
      781 gatcaatagc gacatcaagg acatggcgct ctggatggaa gcccagatgg gtgaaatgcc
      841 ggacgtaatc gacgcaaaag tgctcgacac gatccatgct ccttatgttg tcacgccgac
      901 cgagcgcggc cgcctgcgca agttcctcga gcgtctcggg acggcgtggt atggctacgg
      961 ctggcgaagc tatgactacg cgggacaccg gataatcggc caccgtggcg gaattcgcgg
     1021 ctatcggtca ctcattctct tcgatccgca gaagaagagc ggggttgtcg ccttgtggaa
     1081 cagcgacacg tggcagccag gtggcctcga gttcgaggtc atggacatgg tctaccattt
     1141 gccattccgt gactggcttg agctcaacaa gaatcccgag cagtcgattg ctgctgccga
     1201 gagcgagtcc gatagcggcg gcccctccta atgctgttcc gcttcccgct tcgttcgttc
     1261 gatttcacgg cgttgcttga ggtgcgccat gtaacggacg acaaagccaa tgatcgtcgt
     1321 tgcaattcca gcaattagcg cgggtagatg ccaggatggg tcgctgggct ttggccatgc
     1381 ctcggcgcca agcagcagtg cgccgataat cgagaaaaga taaccaattc ccttccagtc
     1441 gatcccgttg ccagccggga ttgtgacagt ttcgtgacgc atgcgcgagg aacatccaag
     1501 ccgcagagtt ggtttcctcg tttccagcag cagtaggaag acccgagcaa tggcgagttc
     1561 aaagacgcag gacgcgatcg ctctattgaa ggaagatcac cgcgcagttg agaagctctt
     1621 caaggacttc gaggaagcga aaggcgaggg gcgcaaagag aaacttgccc gtcgcatctg
     1681 tctcgagctc acggtccata ccaagatcga agaggagatc ttctatcctg catgtgatgg
     1741 taagatcgag gaggacaagc tcaaggaagc caaggtcgaa catgacgcgg caaagctgct
     1801 gatggcggaa atcgaagcgg ggagcggcgc aagcgacgat ttcttcgacg ccaaggtcaa
     1861 ggtcctctcc gaggagattg agcatcacgt cgaggaagaa gaaggtgaac tgtttcccga
     1921 ggtgcgcaaa gctgacctcg acctccaatc tctgggcgag aagcttgccg cgcgaaagaa
     1981 agagctgctg aaggagtata aggattcagg cgttccagag cctgagctcc agacgatgga
     2041 cgaagtgtcg atctagctgc gcgcgcggcg ctggtgagcc cctgacgact agcgggagcg
     2101 tcggcaacaa tcgtcgcgcg ggcggactgc aactgccgca tctaagtagg cgcgaacgcc
     2161 accagaaacg aggaagcgcc gagcgggcgc ttcattgtcg tcggcattca ccaatcacta
     2221 gcggatgtga cgctatcccg acggctgtga cacccgtcga aatttacctc agtgcagcaa
     2281 cttcagtgtc acgaccgtaa atgtcgtcaa caaagctcag ctgaccgttt cgcgcctggg
     2341 cggttaggta ggtgacgtag atcggcacgg gagtaggtaa caggacgttc tgctccggat
     2401 ctcgcgatgc gacctgtgga tctttaccca tcagccagcg accaaagcgc tccgcatcct
     2461 caagccggat gcagccatgg ctcacatccc ggtcatcttg agcgaacaga tccttgttgg
     2521 gcgtgtcgtg gaggtaaatg tcggaaccgt tcgggaacgg aaacttgatt cgccccatcg
     2581 agttcagcgg cccgggaagc tgccgcacct ggacgagctc ctcgcccgct gcaaccgcgt
     2641 gccaattgac cttggttgga tcgaggatct ctccggagcc gtcaggcgat aatatctgat
     2701 acccgtggat cttcaggtac ttcatgccct gttcgaggac gttcttagca atgagcgagc
     2761 gaaccatctc accagagacg tgccagtaag ggttcaatgt cgcgtaatag atcgtgctcg
     2821 caagcatcgg cgtttgcgtc gatggatcgg ccttgccgac ggcgaccttc attgaatcga
     2881 cgatctggcc gtcgtcgatc atgtacaggc gagcacccgc ggtatcgatc atgacatagc
     2941 ggccctgcgg cgggatatcc cgtgctcggt caaggcttgc aagaacgcgc ggatcgagct
     3001 cgccgccatt ggactgcatc gttgtccagg ctgcgtcacg aagctgcgcg taaagcgggt
     3061 tcacctccga aacggtgcgc acatagctcg cgagcgaggg tgcggcggcc gtcttcgcga
     3121 ggatcgtcgc gggcgaatcg cggcgtggcg cgacccatcg gtccgcgtag gtcattcccg
     3181 tcggcggcgt ttcaagggtc tcaacatatt ggacccaggc cgatgttagc agacgatcag
     3241 cactctcgag cgcattcgtg tcgccagtct gtgctcttgc aagaagagcc tgggcttgcg
     3301 tcgcaatggt ggggccgctt ggcattccat caagggaagc gcgctggagt gtcccaatga
     3361 gctcacgcgc cgctgcgctg tcggcgccgc ctcttagcca caaaggggcg ccgccgcgcg
     3421 aagcataaaa gctgttcacg gcctggtcgg ccgcgaagtt aaagcctggc gccgtcggta
     3481 gctcggggtt cgttgccgca atcgagggca cagaaaggac cgtcagcgcc gcacaggcga
     3541 cgccggcaag cattcggatt ttcacaacca aaacctttgt tgatcagtct cttgaggggc
     3601 aaaacgcagc agcgggcacg tggttcaaaa tagttgttga catttatgtt tcaattgttc
     3661 cggacctgaa cagttcagtt aatcaagtgc cgcgactcga ctagccgtgg cacagtgcgc
     3721 ccgcgcgatc gttcctccgt ccaaaccgaa agaaggagtg acacatggtc ggtaaaattg
     3781 acggcggcgg tctcagcgga ttcggtgtcg cgaaagagga cgtgagaccg ctcgccggga
     3841 cgggtggtgc ggctggccca ggtacccgcg caggagaggg gcagccttcc ggtgaaggga
     3901 ttaacgttcg gggcgagtgc gtcgctgacg agaaggccag cgaagtcgcg cgggaagcgg
     3961 cagcgctcgg gactgatggc gatcatgacg agacaccggc gctcgagtat ggcgaaggcg
     4021 atcgacccaa tg
//
LOCUS       DASRBJ010000110         3345 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_469491,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000110 DASRBJ010000000
VERSION     DASRBJ010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3345)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3345)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3345
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469491"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1045
                     /locus_tag="VE968_03135"
     CDS             <1..1045
                     /locus_tag="VE968_03135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TRCF domain-containing protein"
                     /protein_id="HZU50850.1"
                     /translation="HYRGGQSFFVVPRVADLPDMEEWLRAQVPEVKFITAHGQMSATE
                     VEERMSAFYDRKYDVLLSTTIVESGLDIPTANTLIVYRSDRFGLAQLYQLRGRVGRSK
                     TRAYAYLTMPADRAITETANKRLQVLADLDSLGAGFQLASHDLDIRGAGNLLGDEQSG
                     HIKEVGFELYQSMLEDAILELKAGGIPQHEEFTPQISVDAPIMIPESYVPDLDLRMGL
                     YRRLGELGDRSAIDAFAAELIDRFGTLPEETANLMKIVEVKLNCRDASVAKLDIGAKG
                     AVVTFAESGFPDVPGLLSYVERLKGAAKLRPDSKMAVTREWATPEARLNGALQLSRGL
                     ARVAAVGEKKAAA"
     gene            complement(1042..1815)
                     /locus_tag="VE968_03140"
     CDS             complement(1042..1815)
                     /locus_tag="VE968_03140"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HZU50851.1"
                     /translation="MSANRQRDLLLEEVIAHEQVDVLFQPLIEPATGRIAGAEALARS
                     AVVTDAQQLFARAAAGGLNERLSRLVQRKALESAASWDGALRDLGLSINILPHDISRE
                     GYDCWLLKEIAAAGIDPRRVTAEITESALLVDQDAVVERLTHLRAEGLSIAVDDFGTG
                     YASLAYLISLPLDAIKIDRGLITDIVGGERDRIVVKALIHLARELDLKVVIEGVETTG
                     QLSLLAEWGCDLYQGFLGAGALTHDELTRFVAAATPKAS"
     gene            2062..2820
                     /locus_tag="VE968_03145"
     CDS             2062..2820
                     /locus_tag="VE968_03145"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019674 - NAD metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HZU50852.1"
                     /translation="MGLLSSHTDIATSAEALLRRRYLFASEAEARSFVALGGDGFMLQ
                     TLHRMLESDDPKPVFGMNRGTVGFLMNEWRIDRLPERIANAKAIRVAPLQMKARTVSG
                     ETFTFAAINEVSLLRETRQTAKIEISVNGRVALAELACDGVLVATPAGSTAYNLSARG
                     PILPLQAKMLALTPISPFRPRRWSGAILPDDTAVCFTILEAENRPVSAVADQIEVRDV
                     ARVEVRLDRDRSLTLLFDPEHALDERIAMEQFAT"
     gene            2911..2985
                     /locus_tag="VE968_03150"
     tRNA            2911..2985
                     /locus_tag="VE968_03150"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2943..2945,aa:Asn,seq:gtt)
     gene            3070..>3345
                     /locus_tag="VE968_03155"
     CDS             3070..>3345
                     /locus_tag="VE968_03155"
                     /inference="COORDINATES: protein motif:HMM:NF022607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2939 domain-containing protein"
                     /protein_id="HZU50853.1"
                     /translation="MSKKGKLAGLAAAALMIFAAIAWYFESPAWTLRNMKAAVDAQDA
                     DALSSHIDYPALRSSLKAQLLTEITGRMEDNKSGLASVGLALGSAVIV"
BASE COUNT          684 a          990 c          983 g          688 t
ORIGIN      
        1 acattatcga ggaggtcaga gcttcttcgt tgtgccgcgc gttgcggatc ttcccgacat
       61 ggaagagtgg cttcgcgcgc aggtgcccga agtgaagttc atcactgccc acggccagat
      121 gagcgcaact gaggtcgaag agcgaatgag cgccttttac gaccgcaaat atgatgttct
      181 cttatcgacg accattgttg agagcggtct cgacatcccc accgcgaata cgctcatcgt
      241 ttaccgatcc gaccgcttcg gcctcgcgca actctaccag ttgcgcggac gggtcggccg
      301 atccaagaca cgcgcttacg cctatctcac catgccagcg gatcgggcga tcacggaaac
      361 ggcgaacaag cgcctccaag tcctcgctga tctcgatagc cttggagccg gatttcagct
      421 cgccagccac gatctggaca ttcgcggcgc cggcaatctg cttggcgatg aacagtctgg
      481 ccatatcaag gaggtgggct tcgaactcta ccagtcgatg cttgaggacg cgatcctgga
      541 actcaaggct ggtggcattc cccagcacga agagttcacg ccacagatca gtgtggacgc
      601 tccaatcatg attccagaat cctacgtgcc ggatctcgat ctgcgcatgg gcctctatcg
      661 ccggcttggg gaactcggcg accgctcggc aatcgatgcg ttcgccgccg agctaatcga
      721 tcgctttggg acgcttccgg aggaaacggc caacctcatg aagatcgttg aggtgaagct
      781 caactgtcgc gatgcttcgg ttgccaaact cgacatcggc gccaagggag cggtcgtaac
      841 ctttgctgag agcggctttc ccgatgtgcc tggcttactc tcctatgttg aacgacttaa
      901 gggagccgcg aagcttcggc cggacagcaa aatggcggtc acgcgcgaat gggcaacgcc
      961 cgaagctagg ctcaatggag cgctccagct ttcgcgcgga ctggcgcgtg tcgcggcagt
     1021 tggagaaaaa aaggccgccg cctaggaggc cttgggtgtt gcggcagcaa cgaacctagt
     1081 cagctcatcg tgcgtcaacg cgcccgcgcc gagaaatccc tggtacaagt cgcaccccca
     1141 ttccgcgagc aagcttaatt gaccggttgt ttcgacgcct tcgattacga ccttgaggtc
     1201 gagctcacga gcaagatgga tcaacgcctt gacgacgatc ctgtcacgct caccgccgac
     1261 gatatccgtt attagtccgc ggtcgatctt gatcgcatcg agcggcaatg aaatgagata
     1321 tgcaaggctc gcgtaaccgg tcccgaaatc gtcgaccgca atgctaagcc cctccgctct
     1381 taggtgcgtg aggcgctcga cgaccgcatc ctgatcaacc aggagcgcac tttcggtgat
     1441 ttctgctgtt actcgcctgg gatcaatgcc ggccgcggca atttccttca gcagccagca
     1501 atcatagccc tcgcgtgaga tgtcgtgtgg caggatattg atggaaagcc caaggtccct
     1561 caaggctcca tcccaactag ccgcagattc gagcgccttt cgttgaacga gccttgaaag
     1621 tcgctcgttc agaccgccgg ccgcggcgcg cgcaaaaagc tgctgagcgt cggtaacgac
     1681 ggccgatcgt gccaaggcct cggcgccagc aatgcgaccc gtggctggtt cgatgagtgg
     1741 ctggaagaga acgtcgacct gctcatgtgc aatcacttcc tcaagcagaa ggtcgcgttg
     1801 gcggttggcg gacatcagtg cccctctgtc cgatgcccgc cgtccccact tgctgatgtc
     1861 gtcccaggtc aacataccgg tcgcgtaacg aagccgtagc gcgcttgata cagtacagca
     1921 gggtcgcgca tcgaaacggg acagtgacgt tgtcgctctt aactcctatc tttcaagacg
     1981 aaggcagcaa ggagcagtga cttgaacgca gatgcggcta gcgccggcaa tcatgctccc
     2041 gacgatctca caagcctcgg tgtggggctg ctgtcatcac acacggacat cgcgacctct
     2101 gccgaggcat tgctacgacg acgatacttg ttcgcgagcg aagccgaggc gcgcagcttc
     2161 gtcgcgctgg gtggtgatgg cttcatgctt cagacattgc accgaatgct ggagtcggac
     2221 gatccaaagc ccgttttcgg aatgaaccgc gggacggttg gatttctcat gaatgagtgg
     2281 cgcatcgacc ggttgccgga gcgaattgcg aacgccaagg cgattcgcgt tgcaccgttg
     2341 cagatgaagg cgcgaacggt cagcggcgag accttcacct ttgccgcgat caacgaggtt
     2401 tcactcctga gggagactcg acagacggcg aagatcgaga tttcggtcaa cggccgagtg
     2461 gctcttgccg aactcgcctg cgatggtgtt ctcgtcgcga cgccagctgg ctcaacggcg
     2521 tataatctct ccgctcgcgg cccaatcctt ccccttcagg cgaaaatgtt ggcgctgacg
     2581 cccatcagcc cgttccgccc gcgacggtgg tcaggcgcga tccttcccga cgatacggct
     2641 gtctgtttca caattcttga ggcggaaaac cggccggtct ctgcggtcgc tgaccagatc
     2701 gaagttcggg acgttgcacg agttgaagtg cggcttgatc gcgatagatc gctgacgttg
     2761 ctgttcgatc ctgagcatgc gcttgatgaa cgaatagcga tggagcaatt cgcaacctga
     2821 tcggtgtgcg agagcttgcc tttagcggtg tctccgctat ctagcgcctg cccgttgagg
     2881 gacccacttc atggcgggac ctcgggatgc tccccgatag ctcagcggta gagctctcga
     2941 ctgttaatcg agcggccgtt ggttcgaatc caactcgggg agccattttc ctaaggccca
     3001 aaccggaaat agcctcggct cggcactagc gccaatcgcc ccagcggttc gaacgacggg
     3061 agttggtgaa tgagcaagaa gggcaaactt gccggtctcg ctgccgcggc tttgatgatc
     3121 tttgcggcaa tcgcctggta tttcgaatcg cccgcttgga cactgcgtaa catgaaagcc
     3181 gccgttgatg cgcaggacgc cgatgctctc agctcgcaca tcgattaccc agccctgcgt
     3241 tccagcctca aggctcagct cctgactgag atcaccggaa ggatggagga taacaagagc
     3301 ggcttggcgt cagtgggctt agccttgggg tcggccgtca ttgtt
//
LOCUS       DASRBJ010000111         2357 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_162523,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000111 DASRBJ010000000
VERSION     DASRBJ010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162523"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..594
                     /locus_tag="VE968_03160"
     CDS             <1..594
                     /locus_tag="VE968_03160"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HZU50854.1"
                     /translation="RFDATPPEDIPSLPHGGPNWIFVGRVAPNKGLHQLVKAFEAFLA
                     LEAGARLTIVGKYDPEDRYYRDLRALVLNRGLAERVVFTGFVADDALAAHYRNADVFV
                     CLSEHEGFCVPLVEAMFFDVPIVAKATTAIPETLGSAGILLEEEADIYDVAALVHQIW
                     RDVQLREAVVAGHRLRRRAFLPEQIYPLIDELARELA"
     gene            complement(644..1510)
                     /locus_tag="VE968_03165"
     CDS             complement(644..1510)
                     /locus_tag="VE968_03165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50855.1"
                     /translation="MSFVRNMWRLFHGSRGESILDTPPSLANPVSQLCTQAQFDDPAY
                     AFWCEKIGERPRFHRKQWEYCYILQALATNGVLAPESRGIGYGVGKEPLPAVMASYGC
                     HVLATDQDAEAASTTGWTDTSQYSLTKNELNSRNLCDGPMCERLVELRVVDMNRIPDD
                     LRGYDFTWSACALEHLGSLSHGLAFIEASLATLRPGGIAVHTTEFNCSSNHETLETQG
                     LSIYRERDIVDLARRLKRQGHQITLNLHRGDLPLDRHIDVPPYSSEKHLKLMVEGYVT
                     TSIGLLIRKRPH"
     gene            complement(1750..2229)
                     /locus_tag="VE968_03170"
     CDS             complement(1750..2229)
                     /locus_tag="VE968_03170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HZU50856.1"
                     /translation="MKKPGQPAQPSGPEEGKSSVGRLSAKVAIALDLLKGKISVPQAS
                     RKYGFTQAEFREWAEEYHHGGADALKVNKKGLEAEYRAEVKRLQAKIGELVMDTQGGD
                     AAFQFGRSDATRLSARRRWPKAVCRVLGVTRSTAYYREQRIWAIDWFAARVYLAAYP"
BASE COUNT          437 a          711 c          699 g          510 t
ORIGIN      
        1 cggttcgacg caacgccgcc cgaggatatc ccaagcctcc cgcacggggg tcccaactgg
       61 atcttcgtcg gccgggttgc gccgaacaaa gggttgcatc agctcgtaaa ggcgttcgag
      121 gcgttcctcg cgctcgaagc cggtgctcgg cttacgatcg tggggaaata cgatccggag
      181 gatcgctatt atcgcgatct gcgagcgctg gtcttgaacc gcggactcgc cgaacgcgta
      241 gtcttcaccg gattcgtcgc cgatgacgcc ctagccgccc actatcggaa tgccgacgtc
      301 ttcgtatgcc tgagcgagca cgaaggcttc tgcgtcccgc tcgtcgaggc gatgttcttc
      361 gacgtcccta tcgtggcgaa ggcgacgacg gcgatccccg agacgctcgg atcggccgga
      421 atcctgctcg aggaagaggc cgacatctac gatgtcgccg cgctggtgca ccagatctgg
      481 cgggacgtgc agttgcgcga ggccgtcgtg gcggggcacc ggctccgacg ccgcgcgttt
      541 ctccccgagc agatctatcc tctgatcgac gaactagcca gggaactcgc atagagccgc
      601 ggccggaggg cggctcgtat cccgaggagg agcagcagat tcgtcaatgc ggtcgctttc
      661 gtatcagcaa accgatggat gtcgttacat aaccctccac catgagtttt aaatgcttct
      721 cgcttgagta tgggggaaca tcgatgtgcc gatcgagcgg tagatcgccg cgatgaagat
      781 tcagcgtgat ttgatgaccc tgacgtttca gacggcgcgc taggtctacg atgtcgcgct
      841 cacgatagat ggacaagcct tgtgtctcga gggtctcatg atttgaagag caattgaatt
      901 cggttgtgtg aaccgctatg ccgccggggc gaagcgtcgc gaggctggcc tcgatgaagg
      961 cgaggccgtg cgaaagagaa cccaaatgct ccagcgcgca ggctgaccaa gtgaaatcgt
     1021 atccacgtag atcgtccgga atccgattca tatcgacgac gcgaagctcg acgagtctct
     1081 cgcacatcgg cccgtcacac aggttgcgcg agttgagctc atttttcgtt aggctgtact
     1141 ggcttgtatc agtccaaccc gtggtcgagg cggcctcagc gtcttggtcc gtcgccagga
     1201 catgacaccc gtatgacgcc atcacggccg gcagcggctc ttttccgacc ccgtacccaa
     1261 tacctcggct ctctggggca agaacaccgt tcgtcgcaag cgcctgcagg atatagcaat
     1321 attcccattg tttgcggtga aagcgcgggc gctcgccgat cttctcacac cagaaggcat
     1381 aggctgggtc atcgaattgt gcctgggtgc acaactgcga tacgggattt gccaatgatg
     1441 gtggcgtgtc taaaatagat tcgccgcgac tgccatgaaa gagccgccac atgttgcgca
     1501 cgaagctcaa gatttccccc tgggtgatcc tcgtgtctat cttctcgctt gcttgctgac
     1561 ccttgagatg accccgcggt ttctggacag gttgggcgct taattcggct tgtcggcggc
     1621 gccattcgac cggcagggta gccgaaggcg ggaccgtcgc cctcggctcc ttgtacgtct
     1681 cgaaccggta tttgccatag gggctcaagc ttcgacctct ccatgaagga ttcggccacg
     1741 ccgttttgct cagggatatg cggcaaggta cacccttgct gcaaaccagt cgatagccca
     1801 aatacgttgt tcgcggtaat atgcggtgct gcgagtgaca cccagcactc ggcagacggc
     1861 tttaggccat cgtcgtcgag cagagagccg tgtagcgtcg gatcgaccga actgaaaggc
     1921 cgcatcgcct ccttgcgtat ccatcacgag ctcgccaatc ttcgcttgca gccgcttgac
     1981 ctcagcgcga tactcggcct ctaggccctt tttgttgacc ttgagtgcat cggcgccgcc
     2041 atgatggtac tcttcagccc actcgcggaa ctcggcctgc gtgaagccat acttgcggct
     2101 ggcttgcgga acggagatct tgcccttgag caaatccagg gcgatcgcga cctttgcgct
     2161 gagccgtcca acgctcgact tcccctcttc gggccctgac ggttgcgccg gctgtcctgg
     2221 cttcttcatc gggcaccctc atttcgctta tcgagtgtcc agttcccgag ggggcatttc
     2281 agatcgattt cggtgcagcc ggagcgctcg gcggcctgct cgccgcattg ttcctggccg
     2341 ccggattcaa tacggtc
//
LOCUS       DASRBJ010000112         3551 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_469832,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000112 DASRBJ010000000
VERSION     DASRBJ010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3551
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469832"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..552)
                     /locus_tag="VE968_03175"
     CDS             complement(<1..552)
                     /locus_tag="VE968_03175"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZU50857.1"
                     /translation="MKKLALVTGASAGLGVEFARQLAERGYSLVLAARRRDRLERLAR
                     ELGDARAVAIDLSGKDAAAKLFANIVEAGEELDLLVNNAGAGLIGAFAALEPSRQRQM
                     IDLNIGALVDLCRAVAPTMIARRSGGIINVASTAAFQPGPKMAVYFATKAFVLSFTEA
                     LHEELKPHGVSVSCLCPGPTRTEF"
     gene            complement(549..1010)
                     /locus_tag="VE968_03180"
     CDS             complement(549..1010)
                     /locus_tag="VE968_03180"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HZU50858.1"
                     /translation="MADGDRLTLSLSTGGDVVIKLRPDLAPGHVQRISELANSGFYDG
                     IVFHRVIPGFMAQGGDPTGTGYHGSDKPNLKAEFSNASHKRGVASMARSQDPNSANSQ
                     FFIVTEDSPFLDRQYTVWGEVESGMEYVDALPVGEPPREPGRIVKATVSKA"
     gene            1126..2538
                     /gene="mgtE"
                     /locus_tag="VE968_03185"
     CDS             1126..2538
                     /gene="mgtE"
                     /locus_tag="VE968_03185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HZU50859.1"
                     /translation="MAENDQTAALPPEDSTANSIMDDETRLRPEFVDKVLDAVDAGDD
                     ETARQLVRPLHPADVADLIELAASDEREGLVKALAGIVSPDVLAEMNDYVREGLLDEL
                     EPQQVADIAGQLETDDAVALIEDLDRDEQQAVLRAMEPDDRAAVEEALSYPEESAGRL
                     MQRDLCAVPEHWKVGQVIDYLRSTADLPTDFWEVFVVSPDHHPVGTCKLSTILRTPRT
                     RQVSDIMQREQTLIPVDMDQEDVALRFQKYALVSAAVTDESGRLVGMITVDDIVHIIQ
                     EEAGQDVLRLSGAFEGDINAPLFSTIRTRMWWLLVNLVTAILAASVIASFSGTIERLV
                     ALSALMTIVSGMGGNAATQTMAVTVRALATNQLTSSNTWRAIGREWAIALANGMGLGV
                     LMALGCELWYHDTGLSLILFAAMLINSINAGLSGVLIPLALEKFRLDPAVTSTIFVTT
                     MTDCMGFFSLLGLATLFHVH"
     gene            2576..2974
                     /locus_tag="VE968_03190"
     CDS             2576..2974
                     /locus_tag="VE968_03190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1489 family protein"
                     /protein_id="HZU50860.1"
                     /translation="MSTLHLTKVAFACNDVGALQKRMASRSSNGEVRIATRMRPKRSA
                     ELVGGSLYWIVKHRLVACQQILRFEDREDGRIDIVCSAELTMVSPIARRAHQGWRYLE
                     MDRPVIDAGESGLADLPAELYGRLAALALV"
     gene            complement(3134..>3551)
                     /locus_tag="VE968_03195"
     CDS             complement(3134..>3551)
                     /locus_tag="VE968_03195"
                     /inference="COORDINATES: protein motif:HMM:NF022441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2807 domain-containing protein"
                     /protein_id="HZU50861.1"
                     /translation="VNLGTHELGSAFVNGSGSIAINKVVGLSFSLVAQGSAAAQIDDA
                     QADQMSVILAGTASAKLAGRVKRLTAIVRGLGVLDASKLVSPEDHLTAEGPATIDAVA
                     AQSAQVDASGPATIRLAGAPSCDLHVSGSTTVSGCK"
BASE COUNT          695 a         1058 c         1097 g          701 t
ORIGIN      
        1 gaactccgtt cgggtggggc ctggacaaag gcatgaaaca ctaacgccgt ggggcttcag
       61 ttcttcgtgc agtgcttcgg tgaatgatag gacgaacgcc ttcgtcgcga agtatacggc
      121 catcttcggc cccggctgaa aggcggcagt cgaggcgacg ttgattatcc ctcccgagcg
      181 gcgcgcgatc attgtcggcg cgactgcacg gcagaggtca accagtgcgc caatattaag
      241 atcgatcatt tggcgctggc gcgaaggttc gagcgcagcg aaggcgccga tcaacccggc
      301 tccggcattg ttgacgagca ggtcgagttc ctcgcctgcc tccacgatat tcgcgaagag
      361 cttggccgca gcatccttcc ccgagaggtc tatcgccacg gcacgtgcat caccgagttc
      421 gcgcgcaagt cgttccaacc gatcccgccg gcgcgccgca agcacgagcg agtagccgcg
      481 ctcggcgagc tgacgtgcaa attcgacgcc aagcccagcc gaggcgccag ttacgagcgc
      541 aagtttcttc aagccttgga gaccgtcgcc ttcacaatgc gacccggttc gcgcggcggc
      601 tcgccgactg gaagagcatc aacatactcc atcccgctct caacttcgcc ccagacggtg
      661 tactggcggt caagaaaggg ggagtcctcc gtcacgatga agaactggct gtttgcgctg
      721 ttggggtcct gcgatcgcgc catcgatgcc acaccgcgct tgtgcgacgc gttcgagaat
      781 tcggccttga ggttcggctt gtccgaccca tggtagccgg tcccggtggg gtcgccgccc
      841 tgcgccatga agcccgggat cacccgatgg aagacgatcc cgtcataaaa gccactgttt
      901 gcaagttcgc ttatccgctg aacgtggcca ggagcaaggt ccggccgaag cttgatcacg
      961 acgtcgccgc cggtcgagag ggaaagagtg aggcgatcgc cgtcagccat tgagtgaact
     1021 ccgtcataag atcgaaagga gcgcgattta gggtcggtga agtggttgcg ccagagcggc
     1081 agcgaccata ggagagccga accgggtcaa agtgaggagg gcgacatggc cgaaaacgac
     1141 cagaccgccg cgcttccgcc ggaggattcg acggccaatt caataatgga cgacgaaact
     1201 cggctccgtc ccgagtttgt cgacaaggtt ctcgatgccg tggacgccgg cgacgacgag
     1261 accgcacggc agctcgttcg tccgctgcat ccggccgatg ttgccgacct gatcgaactc
     1321 gcggcaagcg acgaacgcga agggctcgtc aaagctcttg ccggtatcgt cagtccagac
     1381 gtgcttgccg agatgaacga ttatgttcgc gagggcttgc ttgatgagct ggagccccag
     1441 caggtcgcgg acatcgcggg ccagcttgag acggacgatg ccgtcgcgct catcgaagat
     1501 cttgatcgcg atgagcagca ggcggtgctc cgtgcaatgg aacccgacga ccgcgccgcg
     1561 gtcgaagagg cgctaagtta tccagaagaa tcggctggcc ggttgatgca gcgtgacctt
     1621 tgcgctgtcc cggaacattg gaaggtcggc caggtcatcg attacttacg ctcgactgcc
     1681 gatctcccga ccgacttctg ggaagtgttt gtagtcagcc ctgaccacca cccggtaggc
     1741 acctgcaagc tctcgacaat cctgcgcacg ccgcggaccc gccaggtcag cgacatcatg
     1801 cagcgcgagc aaacgttgat cccggtcgac atggaccagg aggacgtggc gctccggttc
     1861 cagaaatatg cgctcgtctc ggcagccgtg acggacgaat ccgggcgtct cgtcggcatg
     1921 atcacggtcg atgacatcgt gcatatcatc caggaggaag cgggacagga cgtcttgcgg
     1981 ctgtctggag cgttcgaagg cgacatcaac gcacctttat tcagcaccat ccgcacgcgc
     2041 atgtggtggc tcctggtcaa cctcgttacg gctattcttg ccgcctcggt gattgcgagt
     2101 ttctctggaa caatcgaacg gctggttgcc ctttcggcgc tgatgacgat cgtttccgga
     2161 atgggaggaa acgcggcaac acagacaatg gcggtcaccg tccgagcgct cgcgacgaac
     2221 cagctcacct cgtcaaatac ctggcgcgca atcgggcgtg agtgggcgat agcacttgcg
     2281 aacgggatgg gccttggtgt gctgatggcg ctcggctgcg agctttggta tcacgacacc
     2341 ggcctgtcgc tgatcctctt cgccgcgatg ttgatcaaca gtatcaacgc gggtctttcg
     2401 ggagtgctca tcccgcttgc gcttgaaaaa tttcggctcg accccgctgt cacttcgacg
     2461 atctttgtga cgacgatgac cgattgcatg ggcttcttct cgctgctggg tcttgcaact
     2521 ctatttcacg tccattgagc ttgaccgccg cgccgccacg cccaaatcgg tccgcgtgtc
     2581 gacgcttcat ctaaccaaag tcgctttcgc ctgtaatgac gttggagcgc tccagaagcg
     2641 catggcaagc cgtagctcga acggtgaagt gcgcattgcg acgaggatgc ggccgaagcg
     2701 ttccgcggag ctcgttggtg gttcacttta ttggatcgta aaacaccggc tggtggcctg
     2761 ccagcagata ctccggttcg aggatcgcga agacggtcga atcgatatcg tctgctcggc
     2821 ggagctcacg atggtttcac cgattgcgcg gcgtgcgcac cagggctggc gatatttgga
     2881 gatggaccgc cctgttatcg acgcgggaga gagcggtctc gccgacctgc cagcagagct
     2941 ctacggtcgg ctagccgcgc tcgccctcgt ttgaattatg ctcgtcctag cggaacagaa
     3001 tatagagaat gatgatcagc aagatgatgc cgccgatgcc gagatacatg gttcctctcc
     3061 ctttggtagc cgctcggaag aagaacgttc gcggcgccat ctcggttgcg aggcgccggc
     3121 cgattgctcg agtctatttg cagccgctga cggtcgttga gccgctgacg tgaagatcgc
     3181 atgagggtgc gccagcaagc ctgatcgtcg ccgggccgga cgcatcgacc tgagccgatt
     3241 gcgctgcgac ggcatcgatc gttgccggcc cttccgcggt caggtgatcc tcgggagaca
     3301 cgagtttcga tgcgtcaagc acgccgagtc cccgaacaat cgcggtgaga cgtttcacgc
     3361 gcccggcaag tttcgcgctc gccgttccgg caagaatgac gctcatttgg tctgcctggg
     3421 catcatcgat ttgcgcggcg gccgatcctt gcgcgacaag actaaagctc aagccgacaa
     3481 ccttgttgat ggctatgctt ccagaaccgt tgacgaaggc gcttccgagt tcatgcgtcc
     3541 ctagattgac c
//
LOCUS       DASRBJ010000113         9572 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_417421,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000113 DASRBJ010000000
VERSION     DASRBJ010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 9572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9572
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417421"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..330
                     /locus_tag="VE968_03200"
     CDS             <1..330
                     /locus_tag="VE968_03200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50862.1"
                     /translation="SLASFIVLQALTMCCFAFTSANLSTLAMTNMAAIAGTASSVQGV
                     IWTIAGAAIGFVIGGAFNGTPIPFVVGTAACAVIGFGCVALTEPRRLFAPMAPRTLVM
                     REASEIP"
     gene            complement(392..1474)
                     /gene="recA"
                     /locus_tag="VE968_03205"
     CDS             complement(392..1474)
                     /gene="recA"
                     /locus_tag="VE968_03205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HZU50863.1"
                     /translation="MAAQLKIIGNSVEAPNMDRQKALEAALAQIDRAFGKGSAMKLGS
                     REKIEIETISTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHAIAEAQRNGGT
                     AAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVA
                     ALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISRSRCMVIFINQVRMKIGVMYGN
                     PETTTGGNALKFYASVRLDIRRTGQIKDRDDIVGNTTRVKVVKNKVAPPFKQVEFDIM
                     YGEGVSKVGEILDLGVKAGLIEKSGAWFSYDSVRIGQGRENAKSYLKQNPEVAARIEK
                     AIRGKTEEVGEALMVGIEADEEVAVE"
     gene            1684..4956
                     /locus_tag="VE968_03210"
     CDS             1684..4956
                     /locus_tag="VE968_03210"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZU50864.1"
                     /translation="MKRFYAVLLFGALSSASPLYAADALKFGSAPDWIVPQSVPVAPD
                     KTKDLPAALLLHDQQTLFEPGKISTYSKVAFKIQKPEGLAAGNLSLSWNPATDTITVH
                     RLEIRRGSQAIDVLASGQKFTTMRRETDLDLATLDGVLTANIQPEGLQEGDIVVLETT
                     DEHADPVLKGHVETTFASWADAQIALAHARLTWPSNLAVRIQKTGELPSPLQVSAGNR
                     RTYDLTMHDTEPVIAPKGAPVRFAVGRMGEATDFRSWSEAAALMKPLYDEAAIVPPSG
                     PLRDEVESIRKSSADPVKRAEQALALVQNRVRYVALLMGQGGYVPASAETTWSRRFGD
                     CKAKTALILAILHELQIPAEAVMVNTKIGDAIGERLPMIGLFNHVLVRAHIGSKDYWL
                     DGTRTGDSNLAEIEIPNFGWGLPLVPDASLVHLVPAPYKVAQFETAIDVDARGGAFAP
                     ATIKISSTYRDDAATYLNSVNAQLSSAQRDQWLHQDAEKYFDAFTPTASNITFDKTEH
                     TLTIVENGSAKLNWREGWLYVPGTSVAYNPDFDRPPGPFHDAPFATTYPSYSLTRVKI
                     HLPAGFAAQQKLPAPVHETLAGVEYSRNATIEGNDVVVQSSERSIAQEVAYKDAVAAA
                     ARLKGLNDDDVYLRIVTDYTPTPNDLKAVADSVPGSAAEYLRRGNLYLDYGKFAEALS
                     DFTKALSFDPQNKAALADQAIAYVWLRKFDDASKAIDTVLKSDPDNAVALRALALKAE
                     IAGDYSSAVDAYGKSLKSDPDSGFAIGHRAICEYQLGRQQEALSDTDLALKKNPTWGE
                     LRLIRLELLARSGQAESATNEQDRFIKDNAITAAAAWVSVAQAYARAGLESKAIDAFA
                     HALALKPDPSLYIARAAIRAPSDYNGRMADLDAALKLEPTDSGALAAKAQLIASRGDL
                     HSALAVYEQAMRTVRGQSPLSLGRALILYRMGRKSEAERLLNDWRRSALTATELNEIC
                     WGKASAGILLESAALDCNAALHINQDYAPAIDSLAFVKLRLGKFDEAIALYDRAIAKR
                     ASATSYMGRALAYARKGDDARARTDRERAIREDPNVEAVFADYGLKLDAVHPAHPTAA
                     HQ"
     gene            complement(4964..5620)
                     /gene="clpP"
                     /locus_tag="VE968_03215"
     CDS             complement(4964..5620)
                     /gene="clpP"
                     /locus_tag="VE968_03215"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011240805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HZU50865.1"
                     /translation="MIDHQDIVSQLVPIVIEQSNRGERSFDIYSRLLRERIVFITGAI
                     EDHMASLVTAQLLFLESENPKKDIFMYINSPGGVVTAGLAIHDTMQYIRPKISTVCIG
                     QAASMGSFLLAAGEPGMRVALTNSRIMIHQPSGGAQGMAADIEIQAREILRMRQRLNE
                     LYAKYTGQPLEEIEKAMDRDKFLEADEAKAFGLIDEVFDKRPEAGEDGGTGAGDVTPA
                     "
     gene            complement(5760..6734)
                     /locus_tag="VE968_03220"
     CDS             complement(5760..6734)
                     /locus_tag="VE968_03220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HZU50866.1"
                     /translation="MKQRPSPRIAVLLPCYNEEAAIGATVAGFRAALPDATVYVYDNN
                     SIDRTRAIAAEAGAIVRTERQQGKGHVVMRMFADVDADVYVMADGDLTYDPTAAPAMV
                     DMLISEQLDMVVGTRRHEESHAYRGGHIIGNRIFTGLLAGLFGRTFSDIFSGYRVFSR
                     RFVKSFPVISSGFEIETEISVHALELKMPVGELETAYAARPEGSQSKLSTYSDGWRIL
                     RTIMTLYRVERPALYYGLVGALLTAIALALAAPLVVTYVHTGLVPRFPTAILVTGIMI
                     IAVLCFFAGLILDTVTRGRRELRRTAYLSLEAPAYESRDAQPSARASA"
     gene            complement(6775..7650)
                     /locus_tag="VE968_03225"
     CDS             complement(6775..7650)
                     /locus_tag="VE968_03225"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HZU50867.1"
                     /translation="MSSGFRLDSIYPADKPLSAELSRGDERVHLKTPGAQLVPDRLPP
                     FTPEMVLTRADAPPAKGRAGMSYRDLIPSRLGGRYIASHIIVGPGGQVADWVHYHRVT
                     LQLIYVRKGSVRVVYEDQGDPFEISEGDLVVQPPLIRHRVLECSSGAEVIELSAPALH
                     ETVADHELVLPNRRRRRLFGNQRFLWHRAAATRWTVWNGAEAQESAALLATARLADVR
                     TIRRGRASTLDVPAHDGELVFAFILEGRGLVNGTSLGRADAFVMPPSLPWSINDMTED
                     FRMLHITTAPLDGAA"
     gene            complement(7708..9300)
                     /gene="tig"
                     /locus_tag="VE968_03230"
     CDS             complement(7708..9300)
                     /gene="tig"
                     /locus_tag="VE968_03230"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041383082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HZU50868.1"
                     /translation="MTTKTVETENHGLKRAFMLTIPAQDIEARVEQEVKRIAPQIRMP
                     GFRPGKVPPNLIRKMHGESLRGDALQGAVQDSVQQLLADQKIRPALQPQVELDEGYSP
                     GKDAEVRVSLEALPEVGAPQIDDLKLERLSIDVDDAALDKQLEQLAKQNKHWEDAAKK
                     HAAQIGDLVVMDFEGKVDGTPFEGGKGEDMSIELGSGQLIPGFEDQLVGSKAGDRREV
                     NVTFPDDYPAENLKGKKATFDVTVKGVKTAGEAKVDEDFAKSLGLKDLEQLRGLIRSQ
                     LEQELNALTRTHMKRQLLDQLAARHDFEVPESMVEAEYQNIIAQLRHEASHEEDPAAA
                     LQEIESDAAEYRNIAVRRVRLGLLLSEIGAANGVNVTEQEMNRLIMQAASQYPTKDRE
                     KFIRYIQQEPMAAAQLRAPLYEDKVVDFLFARAAITDRKATREEVEADLESEEGHVHG
                     PGCGHDHDHAPKPKAAKKGTSKAPKTAATDEQALVKDGEASKGTKAKKSDSPKKSESP
                     KKDADKADSRPKATKKAPAKKG"
     gene            complement(9383..9465)
                     /locus_tag="VE968_03235"
     tRNA            complement(9383..9465)
                     /locus_tag="VE968_03235"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9429..9431),aa:Leu,seq:tag)
BASE COUNT         1942 a         2912 c         2695 g         2023 t
ORIGIN      
        1 agccttgcga gcttcatcgt tctccaggca ctaaccatgt gctgcttcgc gttcacatcc
       61 gcgaacctca gcactcttgc aatgaccaat atggcggcaa ttgccggaac ggcgtcgtcg
      121 gtgcagggcg tgatctggac gattgccgga gcagcaatcg gttttgtcat cggtggtgca
      181 ttcaacggga cgccaatccc cttcgtcgtt ggtacagcag cctgcgccgt catcggcttt
      241 ggctgcgtgg ctctaaccga accgcggcgt ctttttgcgc caatggcacc tcgaacgctc
      301 gtaatgcgcg aggcgtccga aattccctag caaatgggag ccgcggagag atcgagcgcg
      361 ggtgtccatt cacgcaccaa gcaagcgtac cctattcaac ggcgacttcc tcgtcggcct
      421 cgatgccgac catcagcgct tcaccgacct cttcggtctt tccgcgaatt gccttctcga
      481 tccgcgccgc gacctccggg ttctgcttca ggtaggattt cgcgttttcg cgaccctggc
      541 caatccgcac cgagtcatag ctaaaccagg caccggactt ctcgatcagc ccggccttta
      601 ctccaagatc gaggatctct ccgaccttcg agacgccctc gccgtacatg atgtcgaatt
      661 ccacctgctt gaacggcggc gcgaccttgt tcttcacgac tttgacgcgc gtcgtattgc
      721 cgacgatgtc gtcgcgatcc ttgatttgac cggttcgccg aatgtcgagc cgcaccgatg
      781 cgtagaactt cagtgcattt ccgccggttg tcgtttcagg attcccgtac atgacgccga
      841 tcttcattcg cacctggttg atgaagatga ccatgcagcg cgatcggctt atcgatccgg
      901 taagcttgcg cagcgcctgg ctcatgagcc gggcctggag accgacatgg ctgtcgccca
      961 tctcaccctc gatctccgcg cgcgggacca gcgccgcgac cgagtctaca acgagaacgt
     1021 cgattgcgtt ggagcgcacg agcgtatcga cgatctcgag cgcctgctcg cccgtgtcgg
     1081 gctgcgaaac gatgagttca tcgatatcga ccccaagctt ctttgcgtag acgggatcga
     1141 gcgcatgttc cgcgtcgaca aatgcagcag tgccaccgtt gcgttgtgct tccgcgatcg
     1201 cgtgcaaggc gagcgtcgtc ttgcccgaac tttcggggcc ataaatttcg acgatacgac
     1261 cacgaggcaa gccgccgacg ccaagagcaa tgtcaagacc gaggctcccc gtcgaaatcg
     1321 tctctatctc gatcttttca cggcttccga gcttcatcgc ggagcccttg ccgaatgcgc
     1381 ggtcgatctg ggcgagcgcc gcctcaagcg ccttctgacg gtccatgttt ggagcttcca
     1441 ctgagtttcc gatgattttc agttgcgctg ccatgtcccc cgtctccgtt caagcgtcaa
     1501 tcgacggcac cccgtggccg cctgtggaaa actccttgta cccactttgt tctgatagaa
     1561 caagatgaga acatcaagaa tatgaagtcc cggttcggcg cagaccactt cgcctgttgt
     1621 ttcggaagcc ttgttgatca ggatcaatct ggcatcataa gatggctcgg tcagggggat
     1681 cttgtgaagc gtttctatgc cgtgctccta tttggagcgt tgtcgtcggc atcgccactt
     1741 tacgcggctg acgccttgaa attcggttca gcaccagact ggattgtgcc ccagtcggtt
     1801 ccggttgcgc cggacaagac gaaagatctc ccggctgcgc tgctgttgca cgaccagcaa
     1861 accttattcg agcccggaaa gatcagcacc tactcaaaag tggccttcaa gatccaaaaa
     1921 ccggaggggc ttgccgcagg caacctgtcg ctctcctgga acccagcaac ggatactatc
     1981 accgtccacc ggctcgaaat acgccgagga agccaagcta tcgacgtgct cgcctcgggc
     2041 cagaaattca cgaccatgcg gcgagaaacc gatcttgatc tcgcgaccct cgacggagtg
     2101 ttgaccgcaa atatccagcc ggaaggtctg caagaaggag acatcgtcgt tctcgagacg
     2161 accgacgaac atgccgatcc cgtgctgaaa ggccatgttg agaccacgtt cgcgagttgg
     2221 gccgatgcac agatcgcgct tgcccatgcg cgtcttacct ggccctcgaa tcttgcggtc
     2281 cgaatccaga aaaccggcga attgccttcg ccactgcagg tctcagcagg caatcgacga
     2341 acatacgatt tgacgatgca tgacactgag ccggtgatcg ccccaaaggg cgcaccggtc
     2401 cgcttcgccg ttggacgaat gggcgaagcg accgatttcc gttcctggag cgaagctgcc
     2461 gcgctcatga agccgcttta cgacgaggcg gctatcgttc cgccgtcggg accgcttcgt
     2521 gacgaggttg aaagcatcag aaaatcgtcg gccgacccgg tgaagcgtgc cgaacaagca
     2581 ctggctcttg tccaaaatag agtccgttac gtcgcattgt tgatgggcca aggtggatac
     2641 gtccctgctt cggctgagac tacttggtcg cgccgcttcg gggattgcaa ggccaagaca
     2701 gcgctgatcc tcgcaattct ccacgaactg cagatccctg cggaagccgt catggtcaat
     2761 acgaagatcg gcgatgctat cggtgaacgc ctccccatga tcgggctttt caaccacgtg
     2821 ctggtgcggg cgcacattgg ctcgaaggac tattggctgg acggaactag gaccggcgac
     2881 tccaatcttg cagagatcga gatcccaaac ttcggctggg gccttccgct cgtccccgat
     2941 gcctctctcg tccaccttgt ccccgcgccc tacaaggtcg ctcaattcga aacggcaatt
     3001 gacgtcgatg cgcgtggcgg agcgttcgca ccggccacga tcaagatcag ctcaacctat
     3061 cgagacgatg cggcgacata tctcaattcg gtcaatgctc agctgagttc cgcacagcgc
     3121 gatcaatggc tccatcaaga cgcggagaaa tatttcgacg cgttcacgcc gaccgcatcg
     3181 aacatcacct tcgacaagac tgagcacact cttacgattg tcgagaacgg gtcggcaaag
     3241 ctgaactgga gggaaggatg gctttacgtc ccgggaactt ccgtcgccta caatcccgat
     3301 ttcgatcggc cacccgggcc gttccatgat gcgccttttg caacaaccta tccaagttac
     3361 agcctgacta gggtcaaaat tcatttgccc gccggctttg ccgcgcaaca aaagcttccc
     3421 gcaccggtcc acgaaacgct agcgggtgtc gaatactcgc gaaacgcgac aatcgagggc
     3481 aatgacgtcg tcgttcagtc gagcgagcgc tcgattgcgc aggaggtagc gtacaaggat
     3541 gcagttgccg ccgcagcgcg cctcaaggga ctaaacgacg atgacgtcta tctacgaata
     3601 gtcaccgact acacccccac tccgaacgat ctcaaggcag ttgccgatag cgtgcccgga
     3661 tctgccgccg aatatttgcg tcgcggtaat ctttaccttg attacggtaa gtttgctgaa
     3721 gccttgtcgg atttcaccaa ggcattgtct ttcgatcccc aaaacaaggc tgcgcttgcg
     3781 gatcaggcaa ttgcctatgt ctggttgaga aaatttgatg acgcatccaa ggcgatcgac
     3841 actgtcctaa aaagcgatcc tgataacgcc gtcgcgctac gtgcattggc actcaaggct
     3901 gaaatcgcgg gcgactattc aagcgcggtg gacgcctatg gaaagtcgtt gaaaagcgat
     3961 cccgacagcg gtttcgcgat cggacatcgt gcaatctgtg aataccagct cggccgccag
     4021 caagaagcac tctcggacac cgatcttgcc ttgaagaaga atcccacgtg gggtgaactt
     4081 cgcttgatcc gcctcgagct tcttgcgcga agcgggcaag ccgaaagtgc cacgaatgag
     4141 caagatcgct tcattaaaga taatgcgatc acagcggccg ctgcctgggt ttcggtcgca
     4201 caagcctatg cgcgtgccgg gctcgagagc aaagcgattg atgcattcgc gcacgcgctg
     4261 gcgctcaagc ccgatccttc gctctacatt gcgcgagctg cgattcgagc accatcggat
     4321 tacaatggcc ggatggccga tctcgatgca gcgctgaagt tggagccaac cgattcaggc
     4381 gcgctcgcag caaaggctca attgattgca agtcgcggtg atctccattc cgcactcgct
     4441 gtttacgagc aggcgatgcg aacggttcgc ggccagtcgc cgctttcatt ggggcgagcg
     4501 ctgatcctct acaggatggg gcgcaagtcg gaggcagaac ggctgcttaa cgactggcgt
     4561 aggagcgccc ttaccgcgac cgagctcaac gagatttgtt ggggtaaagc ttcggccggg
     4621 atcctactcg agtccgcggc gcttgattgc aacgctgcgt tgcacatcaa ccaggattac
     4681 gcaccggcaa tcgatagtct cgcattcgta aagctacgtc tcggtaagtt cgacgaagca
     4741 attgcgctgt atgaccgagc aatcgcaaaa cgagcttccg ctacgtcgta catgggtcga
     4801 gccctcgcct atgcgcgaaa gggagatgac gctcgtgccc gcactgaccg cgaacgcgcc
     4861 attcgcgagg accctaacgt cgaagcggta tttgccgatt acggtctcaa gctggatgca
     4921 gtgcacccag ctcatccgac cgcagctcat cagtaatcga tgatcaggcc ggcgtaacgt
     4981 cccccgcgcc ggttccgccg tcctcgccag cctccgggcg cttgtcgaag acttcgtcaa
     5041 tcagcccaaa tgccttcgct tcgtcggcct cgagaaactt gtcacggtcc atggccttct
     5101 cgatctcctc gagaggctgc cccgtgtatt ttgcgtaaag ctcattgagc cgctgacgca
     5161 ttctcaagat ttcacgcgcc tggatttcga tgtcagccgc cattccctgt gcgccgccgg
     5221 acggctggtg aatcatgatt cgactgttgg tgagagcgac gcgcattccc ggctcgcccg
     5281 ctgcgagcag gaagcttccc atcgacgcag cctgcccgat gcacactgtg ctgatcttcg
     5341 gtcggatata ttgcatggtg tcgtggatcg cgagcccggc cgtaaccaca ccgccagggc
     5401 tgttgatgta catgaaaatg tctttcttgg ggttttcgga ctcaagaaac agcagctgag
     5461 ccgtcacgag agaggccata tggtcctcaa tcgcacccgt gatgaagacg atccgctcgc
     5521 gcagcagccg cgaatagatg tcgaagctgc gctcgccccg gttcgactgt tcgataacaa
     5581 ttgggacgag ttgcgaaaca atgtcctgat gatcaatcac gggaaacgga tcctttgttg
     5641 cataggcatc ttacatcggc gcgaaacgac caaggttcaa gcgggcgcga gccttggcgc
     5701 gacttcaccg tggataacca acaatcctcg gcacgtgcgc ggctcggact gcgcgcgctt
     5761 caggccgacg cgcgcgccga cggctgcgcg tcgcgagatt cgtaagctgg agcctccagc
     5821 gagaggtatg ccgtccttcg aagttcgcgc cggcccctcg tcaccgtgtc caaaatgaga
     5881 ccggcaaaga agcaaagaac agcaatgatc atgatgccgg tcacgagaat cgccgttgga
     5941 aaccgcggga cgagccccgt gtgcacataa gtgacgacaa gcggtgcagc gagcgcaagt
     6001 gcgattgcag tcaagagtgc gccaacgaga ccgtaataga gagccggtcg ctcgacgcgg
     6061 tagagcgtca tgatcgtgcg caggatccgc cacccgtcgg aataggtgga tagcttcgac
     6121 tgagatcctt cagggcgtgc agcataagcc gtctcgagct cgcccactgg catcttgagc
     6181 tcgagtgcat gcacactaat ctcggtctcg atctcaaagc ccgacgagat aacgggaaaa
     6241 ctcttcacga agcggcgcga aaagacacga tagccagaga agatgtcgct gaaggtgcga
     6301 ccgaagaggc cggctagtag cccagtaaaa atcctgtttc cgatgatatg cccgccccgg
     6361 taggcgtggc tttcctcgtg ccggcgcgtc ccgaccacca tgtcgagctg ctcgctgatc
     6421 agcatgtcaa ccattgccgg tgcggccgtc ggatcgtagg tgagatcgcc gtcagccatg
     6481 acatatacgt cggcgtcgac atcagcgaac atgcgcataa cgacgtggcc cttgccctgc
     6541 tgccgctcgg tgcggacgat cgcacccgcc tcggcggcaa tcgcacgggt ccggtcgatg
     6601 ctattgttat cgtagacgta aaccgtcgca tcggggagcg ctgcgcgaaa tccggcgacg
     6661 gtcgcgccaa ttgcagcctc ttcattgtag cagggcagca gaacggcaat tcgcggtgac
     6721 ggacgttgct tcaattaagc cccctcggca gaaatacccg cgctatagaa gggatcacgc
     6781 agcgccgtcg agcggcgccg tcgttatgtg aagcattctg aaatcttcgg tcatatcgtt
     6841 gattgaccaa ggcaaactcg ggggcatgac gaaagcatcg gcgcgaccga gacttgtgcc
     6901 attcacgagt ccccgccctt cgagaatgaa ggcgaagacg agttccccat catgcgctgg
     6961 aacatcaagc gtcgaagccc gacctcgacg aatggttcgt acgtccgcaa gtcgagccgt
     7021 tgccagcagc gctgcacttt cttgggcttc ggcgccgttc cataccgtcc agcgtgtcgc
     7081 agcagcgcgg tgccatagga aacgttggtt gccaaacaga cgccttcgtc gcctattggg
     7141 caacacaagc tcgtgatcgg cgacggtctc atgcaaggcc ggtgcactga gctcaatgac
     7201 ctctgcgccg gacgagcact cgagcacgcg atggcggata agtggtggct gaacgacgag
     7261 atcgccctcg cttatttcaa aagggtcgcc ctggtcttcg tacaccactc gcacgctgcc
     7321 tttgcgaaca tagatcagct gaagggtcac tcgatggtag tggacccagt cggcaacttg
     7381 cccgcccgga ccgacaataa tgtgtgaagc gatgtatcgt ccgccaaggc ggcttggaat
     7441 gaggtcgcgg tacgacatgc ccgccctccc cttcgcgggc ggagcatcgg ctctggtcaa
     7501 caccatctcc ggcgtgaatg gtggcaatcg gtcgggcacg agctgagcgc cgggcgtttt
     7561 caaatgcacg cgttcatcgc cgcgcgacag ctcggcgcta agcggcttat ccgcgggata
     7621 gatcgaatcg agccgaaacc cagaggacaa cagccgttcg agcgcgctgt cgaaatcctc
     7681 cgaaatcagc tcgattgcta tagctcgtca gcccttcttc gcgggcgcct tcttcgttgc
     7741 cttgggcctc gagtcagcct tgtcagcatc cttcttgggc gattcgctct tcttgggcga
     7801 atcgctcttc ttggctttgg tgcccttgga tgcctcgccg tcctttacga gcgcttgttc
     7861 gtccgtcgcg gcagtcttcg gcgccttgga cgtgcctttc ttggccgcct tgggcttggg
     7921 ggcatgatcg tggtcatgcc cgcacccggg gccgtgaaca tgcccttcct cggattcaag
     7981 gtcagcctct acctcctcgc gtgtcgcctt gcgatccgtg atggccgcac gggcaaagag
     8041 aaagtccacc accttgtctt cataaagtgg agcacgaagc tgcgcagcgg ccatgggctc
     8101 ttgctggatg taacggatga acttctcccg gtccttggtt ggatattggg aagccgcctg
     8161 catgatgagc cggttcattt cctgctccgt cacattaact ccgttcgccg caccaatttc
     8221 cgagaggagt agtccaaggc gcacgcgccg aaccgctatg ttgcgatact cggccgcgtc
     8281 cgattcgatc tcctggagtg ccgcagcggg atcttcttcg tggctcgctt cgtggcgaag
     8341 ctgcgcgatg atgttctggt attcggcttc aaccatcgac tctgggactt cgaagtcatg
     8401 acgcgccgcc agctggtcga gcaactgccg cttcatgtgg gtgcgggtaa gagcattgag
     8461 ctcctgttcc agctggctcc tgatgagccc tcttagctgc tcaaggtcct tcaagccgag
     8521 cgacttcgca aaatcctcgt cgacctttgc ctcgcccgcg gtcttgacgc cctttaccgt
     8581 gacatcaaac gtggccttct ttcctttgag attctccgct ggataatcgt ccgggaaggt
     8641 cacgttgacc tcacgcctgt cgcccgcctt cgagccgact agctgatctt caaagccggg
     8701 aatgagctgc cccgagccca actcgattga catgtcctcg cccttgccgc cctcgaacgg
     8761 cgttccgtcg actttacctt caaagtccat gacgacgaga tcgccaatct gtgcagcatg
     8821 cttcttggct gcatcttccc agtgcttgtt ctgctttgcg agctgttcga gctgcttatc
     8881 caacgcagca tcatcaacgt cgatggacaa tcgttcgagc ttcagatcat cgatctgcgg
     8941 agctccaact tctggaagag cttcaagact gacgcgtact tccgcgtcct ttcccggcga
     9001 gtagccctcg tcgagctcaa cctgcggctg gagtgcagga cggatctttt ggtcggcgag
     9061 gagctgctgc acgctatcct gcactgcgcc ttgaagtgca tcgccgcgaa ggctctcgcc
     9121 atgcatcttg cggatgaggt tcggcggcac cttgccggga cgaaacccag gcatgcggat
     9181 ttgcggagca atccgcttca cttcctgctc gacgcgggct tcgatgtctt gcgctggtat
     9241 agtcagcatg aaggcgcgct tcaggccatg gttctcggtc tcgacggtct tggtagtcac
     9301 tgtgcctatc ctgaagtatc tagatcatcg cacgccgcgc tacattcatg ctcgacagtc
     9361 acctgactgc cctgcgtgaa cgtggtgcgg gcggagggac tcgaaccccc acggtttccc
     9421 actggaacct aaatccagcg cgtctaccaa tttcgccacg cccgcgcgga cgcctgaaag
     9481 gacggcggcc tataacaggc atgcgccaat gggcaacccg catcgcggcg gaaaccgcgc
     9541 gcattgcgct gcgttcgggt caagaaggaa tt
//
LOCUS       DASRBJ010000114         4817 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_265687,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000114 DASRBJ010000000
VERSION     DASRBJ010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4817
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265687"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..852
                     /locus_tag="VE968_03240"
     CDS             <1..852
                     /locus_tag="VE968_03240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HZU50869.1"
                     /translation="LERISVTEPFKGLFTQGMVTHETYRAGDGSWLSPNEVTWDGDDW
                     VHIESGEPVTKGRVEKMSKSKRNTIDPEPILAKYGADAVRWFMLSDSPPERDLEWSEA
                     GIEGASRFVQRVWRLAIGSVPAEGDDQGLTRKLHRTIAAVSDAVENLQFNKAVAQLYE
                     LTTAIEKAKPSAARHEAIRTLILLAAPAAPHLAEECWAQLGETSMIADAPWPRFDEAM
                     LVDEQVTLAVQVNGKLRDTLDAPRGLDRAGAEALALASDKVQRQLAGALPRKVIYVPD
                     RLVNIVA"
     gene            852..1346
                     /gene="lptE"
                     /locus_tag="VE968_03245"
     CDS             852..1346
                     /gene="lptE"
                     /locus_tag="VE968_03245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HZU50870.1"
                     /translation="MGRAVLVLMLFALGGCGLRPLYSGGAVGAVATTLGTVTISPIPG
                     QAGWLVRNKLVERFGEGETEAAAFRLDVTLDDNITTFGVRSDQAATQERRTLRARFQL
                     VDLRNGMVVLDATAGSDATLDIVSSEYATVAAEQTALENLSETVADQITARVALFASR
                     TKAK"
     gene            1343..2359
                     /locus_tag="VE968_03250"
     CDS             1343..2359
                     /locus_tag="VE968_03250"
                     /inference="COORDINATES: protein motif:HMM:NF017911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HZU50871.1"
                     /translation="MKSTRTTIGRSIERPDPNIRFYLFHGPDEAQSRGLAMRLTDSLG
                     ATKHLVSSSSIKSDPALLVDEAAAMSLFGGRRVVWIDPATKDIEGGLAALLEGPRPEN
                     VVAAISGVLTKTSALLKVAEGSPHALAHASYVPEGQDAERMVIEIGRRFGLKISPPVA
                     ARLAHAADNDQAIVTQELQKLAIYVDASPHSPKELETEAVDDVGVDSSEGDLQKLADL
                     ALTGETDRLYDELAKLPASGNDAIPILRSLQRRLLMLAPARARVERGERIDAVMASLG
                     KALFWKDKLVVQQMLVKWNAADLARMAARAGKLERALVFSTVPERESLGEELFAIARK
                     ARRL"
     gene            complement(2361..3236)
                     /locus_tag="VE968_03255"
     CDS             complement(2361..3236)
                     /locus_tag="VE968_03255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HZU50872.1"
                     /translation="MGLQALLGDTARPAPPGLNEPAQSRGGVREVEIARIHPNPEQPR
                     VQFDEEALEELAQSIRDRGVLQPILLRAVGDDFMIIAGERRWRAAQRARLHSIPAIVR
                     EIDESTTAELALIENIQRLDLNPLEEAEGYRQLIQRHGHTQDDVSKIVHKSRSHVANL
                     LRLLDLPQFVRQALMKGEISMGHARAVATADDPEALTKEIIARGLSVRQAEDRARREK
                     SVSGASAAVGRSGANDGAKPMDADLGALERQLGDILGLRVQVNHRGAGGAVTLHYSNL
                     DQLDMICQRLSGEPI"
     gene            complement(3266..4048)
                     /locus_tag="VE968_03260"
     CDS             complement(3266..4048)
                     /locus_tag="VE968_03260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006966449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HZU50873.1"
                     /translation="MIRIAVANQKGGVGKTTTAINLATALAAIGWRVLLIDLDPQGNA
                     STGLGVTQAQRARSSYDVLIGSAAPADAVVATRVPRLDLLAATVDLSGAEVEMVGLGD
                     RAHRLDKALAATPIGRWDICLIDCPPSLGLLTVNALVAARHLLVPLQCEFFALEGLSQ
                     LLQTVERIRVAFNPELSILGVALTMFDRRNNLSQAVSEDVRACLGSAVFDTVVPRNVR
                     LSEAPSHGLPALIYDLKCPGSEAYVRLARELIGRLPQLAVAA"
     gene            complement(4045..4653)
                     /gene="rsmG"
                     /locus_tag="VE968_03265"
     CDS             complement(4045..4653)
                     /gene="rsmG"
                     /locus_tag="VE968_03265"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019053144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HZU50874.1"
                     /translation="MIEELAAAAQRDVSRETMDRLQRYVELLVDENSRQNLVSSSTLA
                     SIWRRHILDSAQLVRFEPRPGATWVDVGSGAGLPGIVVACLVKGPVTLVEPRRLRAEF
                     LHRVCESLSLDAKVVPTKVERTEGAYDVITARAVAPLASLFEISQHLSTKNTVWALPK
                     GRTAERELAEARLTWQGVFHVEQSATDADSKVVVATGVRARR"
     gene            complement(4650..4817)
                     /locus_tag="VE968_03270"
     CDS             complement(4650..4817)
                     /locus_tag="VE968_03270"
                     /inference="COORDINATES: protein motif:HMM:NF025300.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50875.1"
                     /translation="MPPELDYASVPGLSVEMVEKLLASKPETLDQASRIPGLTPAALT
                     AVYVAAARRAA"
BASE COUNT          998 a         1429 c         1480 g          910 t
ORIGIN      
        1 ctcgaacgga tctcggtgac tgaaccgttc aagggcctct tcacacaggg aatggttacc
       61 cacgagacat accgtgccgg cgacgggagc tggctcagtc caaacgaagt gacttgggac
      121 ggagacgact gggtgcatat cgagagcggc gaaccggtca ccaagggtcg cgtcgagaaa
      181 atgtccaagt cgaagcgcaa caccatcgat cccgaaccaa tccttgcgaa atatggagcg
      241 gacgcggtgc gctggttcat gctctcggac agtccgcccg agcgcgatct cgagtggtca
      301 gaggcgggga tcgagggagc gtcgcgattc gttcagcggg tttggcgact agcaatcgga
      361 agtgtgcccg cagagggtga cgaccagggg ctcacgcgca agcttcatcg cacgatcgct
      421 gccgttagcg acgccgttga gaatcttcag ttcaacaagg cagtggcgca gctctacgag
      481 ctgacgacgg caatcgagaa agcaaagcct tcggccgcgc ggcatgaggc aatacgaact
      541 ctcatattgc ttgctgcccc agccgcgccg catcttgctg aagagtgctg ggcgcaactg
      601 ggcgagacga gcatgatagc cgatgcgcca tggccgcgct tcgacgaagc aatgctggtg
      661 gacgagcagg taacgctagc agtccaagta aacggcaagt tgcgtgatac gttggacgcg
      721 ccgagagggc tcgaccgagc gggggcggaa gcgctcgcct tggcgtccga caaggtgcag
      781 cggcagctcg ccggggcatt gccacgtaaa gtgatctatg ttcccgatcg gctggtaaac
      841 atcgtcgcat gatggggcgg gccgtattag tcctgatgct gtttgcgctc ggcggctgcg
      901 gactgcgccc gctttatagc gggggagcag tcggtgcggt tgctaccaca ttggggacgg
      961 tcaccatttc gccgatccca ggccaagcag gttggctcgt tcgcaacaag ctcgtcgaac
     1021 gttttggcga aggcgaaacc gaagccgcgg catttcggct cgatgttacg cttgacgata
     1081 atattacaac gttcggcgtc cggagcgacc aagcagcaac gcaggagcgt cggactctta
     1141 gagcacgttt tcaacttgtc gatcttcgca acggcatggt cgttcttgat gcgaccgccg
     1201 gctcggatgc tacgctcgat atcgtcagct ccgaatatgc gacggttgcc gcggagcaaa
     1261 cggcactcga aaacctctcg gagacggtcg cggatcagat cactgcgcga gtggcgctgt
     1321 tcgcgtcgcg tacgaaagcg aagtgaagtc gacgcggaca acgatcggac gttcgatcga
     1381 gcgccccgat ccaaacattc gcttttatct gtttcacggt cccgacgaag cgcaatcgcg
     1441 cggactcgcc atgcgcctca ccgattcctt gggcgccacg aagcacctcg tcagttcgag
     1501 cagcataaag tcagatcccg cgctgctagt cgacgaggcc gccgcaatga gtttgtttgg
     1561 tggcaggagg gttgtatgga tcgacccagc aacaaaggac attgaaggcg gcctcgccgc
     1621 tcttctggaa ggcccgagac ccgagaatgt cgtggctgcg atcagcggtg tgctgaccaa
     1681 aacttcggca ctcctgaagg ttgcggaggg ctcgccacac gccctggccc atgcatccta
     1741 tgtacccgaa gggcaggatg cggagcggat ggtcatcgaa atcggccgtc ggttcggctt
     1801 gaagatcagc ccgccggtcg cggctcgtct cgctcatgcg gccgataatg atcaggcgat
     1861 cgtcacccaa gaactgcaga agctcgccat ctatgttgat gcatcgccgc acagccccaa
     1921 ggaactagaa acggaagcgg tcgatgatgt cggcgtcgac agttcggagg gcgacttaca
     1981 aaagctcgcc gaccttgctc tgaccggaga aactgaccgg ctttatgacg agcttgccaa
     2041 gctcccggct tcgggaaacg acgcgatccc aatcctgagg tcgttacaac ggcggcttct
     2101 catgcttgca ccggcgcgcg ccagagtgga acgaggagag cgcattgatg ccgtcatggc
     2161 gtcactgggt aaagctctgt tctggaagga caagcttgta gttcagcaga tgctcgtaaa
     2221 atggaacgct gccgatctgg caaggatggc cgcacgggcg ggaaaactcg agcgggcgct
     2281 tgttttctca accgtcccgg agcgcgagag ccttggagaa gaactctttg caatcgcccg
     2341 taaagcgcgc aggctttaaa tcagataggc tcgccgctta ggcgctggca gatcatatcc
     2401 aactggtcca agttggaata atggagggtc accgctcctc cagcgcccct gtggttcact
     2461 tgaaccctga gcccgaggat atcgccaagc tgccgctcaa gtgcgcccaa atcggcatcc
     2521 atgggctttg cgccgtcgtt tgcgcctgaa cggccgacag cggcgctagc gccggacacg
     2581 gatttttctc ggcgcgcgcg atcctccgcc tgtcttaccg acaaaccacg ggcgatgatc
     2641 tccttcgtga gcgcctccgg gtcgtcggcc gtagcaaccg cacgcgcatg acccatgctg
     2701 atctcgccct tcattagcgc ttgccgcacg aattggggca aatcgagcaa tctcaatagg
     2761 ttagccacgt ggctacgcga cttgtgaaca atcttcgaaa cgtcgtcttg ggtgtgaccg
     2821 tgtcgctgga tcagttggcg gtaaccttcc gcctcctcga gcgggttaag atccaaccgc
     2881 tgaatattct cgatcagggc aagctcggcg gtggtggact cgtcaatctc gcggacgatt
     2941 gccggaattg aatggagccg cgcacgctgc gcggcacgcc agcgtcgttc gccagcaatg
     3001 atcatgaaat catcgccgac ggcacgaagc aggattggct gaaggacgcc gcggtcgcgg
     3061 atcgactgcg cgagttcctc gagcgcttcc tcgtcaaact ggacgcgtgg ctgctcggga
     3121 ttggggtgta ttcgcgcgat ctccacctcg cgaacgcctc cgcgcgactg ggccggttcg
     3181 ttcagtccag gcggcgcggg acgagcggta tccccgagaa gcgcctggag tcccatccct
     3241 agccccttgg cgggccgctc aacactcatg ctgccacggc cagctgtgga agacggccaa
     3301 tcaactcccg agcgaggcgc acatatgctt ccgagccagg acatttgaga tcgtagatca
     3361 atgccgggag tccatgactg ggcgcttcgg acagacgaac attccgaggg accacggtat
     3421 cgaacacggc gctgccgagg catgcgcgaa catcttcgga gactgcttga gataggttat
     3481 tgcgacgatc gaacatcgtc agcgccactc cgaggatcga aagttcgggg ttgaaggcaa
     3541 cgcgaattcg ctcgacggtc tgcaaaagct gactgagccc ctccagggca aagaattcgc
     3601 attgcagggg cacgagcaag tgccgagctg caacaagtgc gttgaccgtc aaaaggccaa
     3661 gcgacggagg gcagtcgatc agacaaatat cccagcgacc aatgggggtt gccgcgaggg
     3721 ccttgtcgag gcgatgcgca cggtcgccaa gaccgaccat ttcgacttca gccccagaca
     3781 ggtcgacagt cgccgctaac aggtccaagc gcggaacccg cgtggcaaca accgcatccg
     3841 cgggagccgc acttccaatt agcacgtcgt agctcgatcg tgcccgctga gcctgagtaa
     3901 cgccaagccc cgttgacgca ttgccttgcg ggtccaaatc gatcagcagc acgcgccaac
     3961 cgatcgcggc gagcgccgtc gcgagattaa ttgccgttgt ggtcttgccg accccgccct
     4021 tctggttggc tactgcgatg cggatcatcg tcttgctcta actcccgtcg cgacgacgac
     4081 cttggaatcg gcgtcggtgg cgctctgttc cacgtggaac acaccttgcc acgttaaccg
     4141 cgcttcggcc agttcccgct cagccgttcg ccccttcggg agcgcccaga ccgtattttt
     4201 tgtggacaaa tgttgggata tctcaaaaag cgacgcaagc ggcgcaactg ctcgtgcagt
     4261 aatcacgtca tatgctccct ctgtgcgttc gaccttcgtc ggcacgacct tcgcgtccag
     4321 cgatagtgat tcgcagaccc tgtggagaaa ttctgcacgc agtcgccgag gctcgaccag
     4381 ggtgaccggg ccttttacga ggcatgcgac gacgattccg ggcagtccgg ctcccgatcc
     4441 aacgtcgacc caagtagcgc ctgggcgcgg ctcgaagcgg acaagctgcg ccgagtccag
     4501 aatgtggcgc cgccagatgc tcgcgagcgt ggacgacgag accaaattct ggcgtgaatt
     4561 ctcgtccacc agcagttcga catagcgttg gagcctgtcc attgtttcac gtgaaacatc
     4621 gcgctgcgca gcagcggcaa gctcttcgat catgccgctc gccgagccgc cgcaacatag
     4681 acggcggtga gcgctgctgg cgtgagtccg ggaatgcggg aggcttggtc gagtgtttct
     4741 ggcttggacg ctaagagctt ttcgaccatt tccaccgaaa ggccaggcac acttgcataa
     4801 tcgagctccg gcgggat
//
LOCUS       DASRBJ010000115         7972 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_162750,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000115 DASRBJ010000000
VERSION     DASRBJ010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7972)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7972
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162750"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..757)
                     /gene="dapF"
                     /locus_tag="VE968_03275"
     CDS             complement(<1..757)
                     /gene="dapF"
                     /locus_tag="VE968_03275"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003043039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HZU50876.1"
                     /translation="MKRRFDKMHGLGNDFVIVDAREQPFDITPALARAIADRRKGVGC
                     DQLVLLEPSAAADLNMRIWNSDGSEVGACGNATRCVVQLTRATRIATAGGILEGREFG
                     AEIEVVLNEPRFAWDEIPLSYPMDTSSLPLEWEELRRPFAVNVGNPHLVFFVPDARHV
                     HLQRLGPSIENDPAFPERINVNVATVLNDRVKLRTFERGAGETLACGTGACAAAIAAI
                     ATRRAKTPVRVDMTGGSLTVDWQAGEAVRMRGGA"
     gene            complement(763..1812)
                     /locus_tag="VE968_03280"
     CDS             complement(763..1812)
                     /locus_tag="VE968_03280"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HZU50877.1"
                     /translation="MRFGYWMPVFGGWLRNIADEGMEASWDYVRRLTQRSEQTGWDLT
                     LIAELNLNDIKGTDQPALDAWSTAAALAGVTSSIELMVAVRPNFHQPALFAKQAANID
                     NISNGRLALNVVSSWWADEATQYGLQFDQHDDRYARTTEWLQVVDGLWTKERFTFDGE
                     RYHLKEAICAPKPVRKPRPTIYAGGESEAAKTMITSLCDAYVMHGDPVGSIVPKIEDM
                     ERRRSRINKGRMQYGMAAFAIVRDSEAEARRELARITQMPPKPPKGFANFEQWLSGTE
                     LERELKLQEYSVSNRGLRPNLVGTPEEIRERIEEYEAAGLDLLLLQLSPQAEEMDRFA
                     AQVIQPMRAKAPEVA"
     gene            complement(1809..2753)
                     /locus_tag="VE968_03285"
     CDS             complement(1809..2753)
                     /locus_tag="VE968_03285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-glutamate ligase"
                     /protein_id="HZU50878.1"
                     /translation="MSSPSPSTGQLAVLYEHPQWFQPLFAALERHGMAYVPIQLNAHC
                     FDPARREVPAPLILSRVAQSSFLREPEHPIFYAEALLDHWQRCGAEVLNGADVLAIDS
                     SKARQLSLITGLGYSVPRTKVVHRTRDLLDAVDDMAFPLLVKANIGGSGAGIVRYASK
                     EELHSSIEDRMIPQSVDQVLLVQDYVPPSGGTILRLETLGGRFLYAIEIESRGDSFDL
                     CPADACLAQPGRKAVRMNAVQPSVPMIEAAERIARAAGLDVGGIEVVVDERDGTPRFY
                     DINAMSNFVADPLSVLGWDPHDRLIEFLEMKLKGKKAA"
     gene            2813..3238
                     /locus_tag="VE968_03290"
     CDS             2813..3238
                     /locus_tag="VE968_03290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50879.1"
                     /translation="MARAANDVMQSIIFSAVLDGLAALKRASGGLPNQLLRHVQAIHP
                     NVTFADLPKELQEQIIENTRAAFTQLLKDGYAVGPRQQMQQSRPMDRVPERQRPADRR
                     GPPRGPRPPRPSGEGPDRGPRGPGGPSRPRKPKGKPRLG"
     gene            3535..5019
                     /gene="ffh"
                     /locus_tag="VE968_03295"
     CDS             3535..5019
                     /gene="ffh"
                     /locus_tag="VE968_03295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HZU50880.1"
                     /translation="MFDTLSDRLGSVFDRLRGRGALTEADVRSAMREVRVALLEADVA
                     LPVAREFVEQVTDRAVGQEVLRSVTPGQMVVKIVNDALIETLGSETAELDLNVSPPAV
                     IMMVGLQGSGKTTTTAKLAKRLSERDRKRVLMASLDVARPAAQEQLAVLGRQSNVDTL
                     PIVAGQQPVDIARRALQSAKLQGYDVVLLDTAGRLHVDDQLMGEMKAVAAASNPIETL
                     LVVDSLTGQDAVNVAKGFAAEVDLTGVILTRMDGDARGGAALSMRAVTGKPIKFAGVG
                     EALDKLEAFHPDRVAGRILGMGDVVSLVERAAETIQVEEAEKLAAKMAKGKFDLDDLW
                     AQFRQMQRMGGLGALAGMMPGLKGMKGAMDLAQNSKALVHMEAMLSSMTAKERARPDI
                     INAKRKIRIAKGSGTTVQEINKLLKMHQEMSTAMKRLKKMGGLGKLAAMFNKGGLEGA
                     LGGLAPQGALPPGGLGGLGGSGGLPGLGGAPFNLPKGFDKFSKR"
     gene            5049..5645
                     /gene="rpsP"
                     /locus_tag="VE968_03300"
     CDS             5049..5645
                     /gene="rpsP"
                     /locus_tag="VE968_03300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007164481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HZU50881.1"
                     /translation="MALAIRLSRGGAKKRPYYRIVVTDSRSPRDGRFIEKVGTYNPLL
                     AKDSPERVKLDAERINHWLGVGAQPSDRVLRFLDAAGIRERAQRNNPSKGEPGEKAKE
                     RAEARASREAELAEAAAAAEIEAATAEAAAEGDQVADEVSEQTPPADNQGESTSEPAE
                     GAGEVTPPTSESPQPAEAAGEGQSASEPAEGSTEATQA"
     gene            5645..6142
                     /gene="rimM"
                     /locus_tag="VE968_03305"
     CDS             5645..6142
                     /gene="rimM"
                     /locus_tag="VE968_03305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833019.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HZU50882.1"
                     /translation="MAEAGSERKVALAAVAGAHGIKGELRLKLFSESAESLSRQETLY
                     IGGVERSLLSIRQTGSTAVAKLDGIADRAGAEELRGSLVEVRRSSLPPLDDGEYYHVD
                     LIGLDARDPQGNPVGTVVAVENYGAGDLLEIQGLDGRRRLIPFKSGIADLHEGFMVVD
                     LAFLA"
     gene            complement(6139..7101)
                     /locus_tag="VE968_03310"
     CDS             complement(6139..7101)
                     /locus_tag="VE968_03310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011445263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HZU50883.1"
                     /translation="MNEPILDCLVVGGGPAGLTAAIYLARFQLDILVVDSGKSRAAWI
                     PCSHNHAGFPDGIKGTDLLERMREQACKYGAKLKTEFVSKLERDEQTGLFRATWGSGD
                     AVARTVLLATGVTNRRPPMDEDLHDEALARGLVRYCPICDGYEVTDKKVGVIGSDSHG
                     VAEALFIRSYTADVTLIAPDMALELNAEDATKLERAGIGCVNGPTRAVGIASDCITVE
                     TADGHYTFESIYPALGSDTHTQLAEMLGATLAQDGCILCDDHQRSNVRGLYGAGDVVH
                     GLDQISHAMGEGGVAATTIRNDLCAQQPRYRERSRNLVEAEDGT"
     gene            7139..7879
                     /gene="trmD"
                     /locus_tag="VE968_03315"
     CDS             7139..7879
                     /gene="trmD"
                     /locus_tag="VE968_03315"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HZU50884.1"
                     /translation="MSFSASVLTLYPEMFPGPLGSSLAGRALSEGIWSLSVTNIRDFA
                     TDKHHSVDDTPAGGGAGMVLRPDVLAASLDSVSDGRPMLALTPRGRPLTQARVRKLAS
                     GAGVILLCGRFEGFDERIFEARALEPVSIGDYVLSGGEVAAMVILDACVRLLPGVMGA
                     ASSGEEESFETGLLEYPHYTRPVIWEGRTIPEVLRSGDHAKIAAWRHERAVQDTRLWR
                     PDLIERHGGASQAPPSGARRRDTKADLK"
BASE COUNT         1525 a         2414 c         2476 g         1557 t
ORIGIN      
        1 tcgctccacc gcgcatgcgc acggcttcgc cagcttgcca atcgacggtc agtgatccgc
       61 cagtcatatc gacgcggacc ggcgttttcg cgcggcgcgt agcaatggcg gcgatggcgg
      121 cagcacaagc accggttccg cacgcgagtg tctctcccgc gccacgttca aacgtccgca
      181 gcttcacgcg gtcgttcaac acggttgcga cgttcacgtt gatgcgctcg gggaacgcag
      241 ggtcgttttc gatcgatggt ccaagccttt gaaggtgtac gtgacgagcg tcgggtacga
      301 agaatacgag atgcggattg ccgacgttga cagcgaaggg gcgacgtaat tcctcccact
      361 cgagcggcag tgaactcgtg tccatcggat aggatagggg tatttcgtcc caggcaaagc
      421 gcggctcgtt caagacgacc tcgatctctg ctccgaactc gcgtccctcg aggattccgc
      481 cggcggttgc gatgcgggtc gcgcgcgtca gctggaccac gcacctcgtc gcgttgccac
      541 acgctccgac ttcgcttcca tcgctgttcc agatgcgcat gttaagatcg gcagcagcgc
      601 ttggttcaag aaggacgagc tgatcacagc cgacgccctt ccgccggtca gcgatcgcgc
      661 gcgcaagggc gggggtgatg tcgaatggct gttcgcgtgc atcgacaatg acgaaatcat
      721 tgccgagccc atgcatcttg tcgaagcggc gcttcatttc gctcaggcga cttcgggcgc
      781 cttcgcccgc attggctgga tcacctgtgc cgcgaaacgg tccatttcct ccgcttgcgg
      841 gctaagttgc agcagcaaga ggtcaaggcc cgctgcttca tattcctcga tgcgctctct
      901 gatctcctca ggtgtaccaa caagattggg acgcaaaccc ctgttcgaaa ctgaatattc
      961 ttgaagcttc aattctcgct ccagctccgt tccagagagc cactgctcga aattggcgaa
     1021 gcccttgggc ggcttgggcg gcatttgcgt gatgcgcgcg agctcgcgtc ttgcttcggc
     1081 ttcgctgtcg cgaacgattg caaacgcggc cattccatat tgcatccgac ctttgttgat
     1141 gcgtgaacgg cgtcgctcca tgtcctcgat ttttggcacg atcgagccaa ccggatcgcc
     1201 gtgcatgacg taggcgtcgc agaggctcgt aatcattgtc tttgccgctt cactttcgcc
     1261 gccggcgtag attgttggac gtggcttgcg gaccggtttt ggtgcgcaga tcgcttcctt
     1321 caagtgataa cgttcaccgt cgaacgtgaa ccgctctttt gtccacaatc cgtcgacgac
     1381 ctgcagccat tcggtggtcc gcgcgtagcg atcgtcgtgc tggtcgaact gaaggccata
     1441 ttgagtcgcc tcgtctgccc accaggacga gacgacgttg agcgccagcc ttccgtttga
     1501 aatattatcg atatttgcgg cttgcttggc gaacaacgct ggctggtgaa agttgggacg
     1561 caccgcgacc atcagttcga tcgacgaggt gacgcccgcg agcgctgctg ccgtggacca
     1621 ggcatcaagt gcgggctgat ccgtcccttt gatatcgttg aggttcagct cggcaatgag
     1681 cgtcaggtcc cagccggtct gttcgctgcg ctgcgtcaag cgccgcacat aatcccagct
     1741 cgcctccatc ccttcgtcag cgatattgcg cagccatccg ccgaacaccg gcatccagta
     1801 accgaacctc atgccgcctt cttgcctttc agcttcatct cgagaaattc gatcaggcga
     1861 tcatgagggt cccagccaag gacgctcagc ggatcggcca cgaagttcga catcgcgtta
     1921 atgtcgtaaa agcgcggcgt tccgtcgcgc tcgtcaacca ccacttcgat tccgccgaca
     1981 tcgaggcctg cggcgcgagc gatccgctcc gccgcttcga tcatcgggac ggaaggctgg
     2041 accgcgttca tccggaccgc ctttcggcca ggctgcgcga ggcatgcgtc agccgggcaa
     2101 agatcgaagc tatcgccacg gctttcgatt tcgatcgcgt agagaaagcg gccgccaagt
     2161 gtttccagtc gcaggattgt cccgccactc ggcggcacat agtcttgaac caggagcacc
     2221 tgatccaccg actgagggat catccggtcc tcgattgaag aatgaagctc ttccttcgat
     2281 gcgtagcgaa cgattccggc gccggagccg ccgatatttg ccttcaccag cagcgggaag
     2341 gccatgtcgt ccacggcgtc aagcagatcg cgcgttcggt gaactacctt ggtgcgggga
     2401 acagaatagc caagcccagt aatcagcgac agttgccgcg ctttcgacga atcgatcgcg
     2461 aggacgtcgg cgccattcag gacttcagcg ccgcagcgct gccaatggtc gagaagcgcc
     2521 tcggcgtaaa agatcggatg ttcgggctca cgcaggaaac tcgattgagc gacccggcta
     2581 aggatgaggg gcgcgggaac ttcgcgacga gcgggatcga agcaatgggc attgagctgg
     2641 atgggcacat aagccatgcc gtggcgttca agcgctgcga acaggggttg aaaccactgc
     2701 gggtgctcgt agaggacagc aagctgtccg gtgctggggc tgggggaact cattgccgcg
     2761 gccacttagg gagcggctcg acgcaagtcc acaagcgagg aagcaagttt caatggcgag
     2821 agctgccaac gacgtcatgc aatcgattat cttttccgcc gtgctcgacg gccttgctgc
     2881 gctgaagcgc gcttccggcg gtcttccaaa tcagcttctg aggcatgtgc aggcgataca
     2941 tccgaacgtg actttcgccg acttgccgaa ggaattacag gagcagataa tcgagaatac
     3001 gcgcgcggcg tttacccagc tgctgaagga tggctatgcg gtcggtccgc gtcagcaaat
     3061 gcagcagtct cgcccaatgg accgcgtgcc ggaaaggcaa cgtcccgccg accgccgcgg
     3121 accgccgcgc gggccgcgcc cgccgaggcc aagcggtgag gggccggatc gcgggccgcg
     3181 gggtccagga ggcccctctc gtcctcgtaa gccaaaaggc aagccgcgcc tcggctgatt
     3241 tcgcgcttga gaacgacctt tttcgtttcg ctgcattgag cggaccggtt tgctcctggc
     3301 gaggaggtgt cgctccggta tcgatcgcgt gccaacgggt tgcctctcaa cgttgatgcc
     3361 gctatgcgcc cggcgtcgtt ttcgacaaaa catcgatgct gggcgctcct gacggagcat
     3421 gagcaaaggc acgctggccg acgaggtttc gtccgccggc gtattttgcg ttgagcctcc
     3481 cgccgcgaag ggatgctccc catatggtcg ctcggcatcg ttgaggagat ttgcatgttc
     3541 gacacgttga gcgatcggct cggcagcgta tttgaccgac ttcgtgggcg aggggccctg
     3601 acggaggccg acgttcgttc cgcgatgcgc gaggtgcgcg ttgcgttgct tgaggcggat
     3661 gtcgctctcc cggttgcgcg cgagttcgtc gagcaggtca ccgaccgagc ggttggacag
     3721 gaggtccttc ggtccgtcac tccgggacag atggtcgtca agatcgtcaa tgatgcactg
     3781 atcgagacgc ttggatcaga gaccgccgaa ctcgatctca acgtaagtcc ccccgcggtg
     3841 atcatgatgg tcggcttgca gggatcggga aagacgacaa caaccgcaaa gcttgcgaag
     3901 cggctgagcg agcgtgatcg caagcgcgtg ttgatggctt cactcgacgt tgctcgcccg
     3961 gcagcgcaag agcagcttgc tgtacttggc cgtcaatcga acgtcgacac actgccgatc
     4021 gtcgccggac agcagccggt cgatattgca cgccgtgcac tgcagtcagc gaagcttcag
     4081 ggttatgacg tcgtcctcct cgacacggct ggccgtcttc acgtcgacga ccagctcatg
     4141 ggagagatga aggcggtcgc cgctgcatcc aatcccatcg aaacgctcct cgtcgtcgac
     4201 agtctcaccg gccaagacgc ggtcaacgtt gccaagggtt ttgctgcaga agtcgacctc
     4261 accggcgtca tccttacgcg gatggatggt gacgcgcggg gtggcgcggc gctcagcatg
     4321 cgcgccgtca ccggaaagcc gatcaagttt gccggcgtcg gcgaagcgct cgacaagctc
     4381 gaagccttcc accctgaccg tgtcgctggt cggatccttg gaatgggaga cgtcgtcagc
     4441 ctcgttgaac gggcagccga gacgatccag gtcgaggaag ccgaaaagct cgcggccaaa
     4501 atggccaagg gtaagttcga tctcgacgat ctctgggccc agtttcgcca gatgcagcgc
     4561 atgggtggcc ttggtgcgct cgccggaatg atgcccggcc tcaagggcat gaagggcgcg
     4621 atggacctgg cgcaaaacag caaggcactg gtgcacatgg aagcgatgtt gtcgtcgatg
     4681 accgccaagg agcgcgcacg accggatatc atcaatgcga aacgcaagat ccgcattgcc
     4741 aaaggcagtg ggacgaccgt ccaggagatt aataagctcc tcaaaatgca tcaggaaatg
     4801 tcaacggcga tgaaacggct caagaaaatg ggcggcctcg gcaagcttgc tgcaatgttt
     4861 aacaagggtg gcctcgaagg cgccctcggc gggcttgcgc cccagggcgc gcttcctccg
     4921 ggaggattgg gaggacttgg tggcagcggt ggactaccgg gtcttggcgg cgctccgttc
     4981 aatctgccta aagggttcga caaattctca aaacgatagt gtaaataact gaaaggaaaa
     5041 actaagtcat ggctctagca attcgcctct cgcgcggcgg cgccaagaag cgaccttatt
     5101 atcgcattgt tgtcaccgac agccgtagtc cgcgggatgg gcgcttcatc gagaaggtcg
     5161 gcacctacaa tccgctgctt gccaaggatt cgcccgagcg cgtcaagctt gacgccgagc
     5221 gtattaatca ctggctcgga gtcggggcgc aaccgtccga tcgcgtgctg cgattcctcg
     5281 atgccgctgg cattcgcgaa cgcgcgcagc gcaataatcc gagcaagggt gagcctggtg
     5341 agaaggccaa ggagcgggcc gaagcgcgcg cgagccgcga agcggagctc gccgaggcag
     5401 ccgcggctgc ggagatcgaa gcagcgaccg ccgaagccgc ggccgaaggc gaccaagtcg
     5461 ccgacgaggt gtcggagcag acaccgcccg ccgacaacca aggcgaatcg acgtccgagc
     5521 ccgctgaagg cgctggcgaa gtgacgccac ccaccagtga gtcgccacag ccggcagaag
     5581 cggccggcga aggacagtcc gcttcggagc ccgcagaggg ctccactgaa gcgacacagg
     5641 cctaatggcg gaggccggca gcgagcggaa agtcgcgctc gctgccgtcg ctggtgcgca
     5701 cggcattaag ggtgagttgc ggctgaagct cttcagcgag agcgcggaaa gcctgtcacg
     5761 gcaggaaacg ctttacatcg gcggtgtcga gcgaagtctc ctttcgatca ggcagaccgg
     5821 cagcaccgcc gtcgccaagc tcgacggcat cgccgatcga gctggtgccg aagagctccg
     5881 cggttctcta gtcgaagttc gccgttcgtc gctgccgccg ctcgacgacg gcgaatatta
     5941 tcacgttgac ctcatcgggc tcgatgcccg tgatccgcaa ggcaaccccg tcgggaccgt
     6001 cgttgcagtc gaaaattatg gcgccggcga tctgctcgaa atccaaggct tggatggtcg
     6061 ccgccggctg attccgttca agtcgggaat agccgacctt cacgagggtt tcatggtcgt
     6121 cgatctggcc tttctggcct aggttccgtc ttccgcctcg acgagatttc tcgatcgctc
     6181 tctatatctt ggctgctgtg cgcaaaggtc attccggatc gtcgtcgccg ccacgccgcc
     6241 ttcacccatt gcgtggctga tctgatcgag gccgtgaacc acatcgcccg cgccataaag
     6301 ccctcggacg ttggaccgct ggtgatcgtc acacaggatg catccgtcct gcgccagcgt
     6361 cgcgccaagc atctccgcaa gctgcgtgtg ggtatcgctt ccgagcgcag gataaatgct
     6421 ctcgaacgta taatgtccgt cggccgtctc gacggtgatg cagtcgcttg cgatcccaac
     6481 ggcgcgcgtt ggtccattca cgcagccgat tccggcgcgc tcgagttttg tcgcgtcctc
     6541 ggcgttgagc tcaagcgcca tgtccggcgc aatcaaggtg acgtcggcgg tatagctgcg
     6601 gatgaacaac gcttcggcaa cgccgtggct gtcgctgcct ataaccccga ccttcttgtc
     6661 ggtaacttcg tacccgtcgc agattgggca gtagcgcact aatccacggg cgagcgcctc
     6721 atcgtggaga tcctcgtcca taggcggtcg tcgatttgtc actcctgtcg cgaggagcac
     6781 ggttcgcgcc accgcgtcgc ccgaacccca ggttgccctg aacagccccg tttgttcgtc
     6841 acgttcgagt ttgcttacga actccgtttt gagcttcgct ccatatttgc aggcttgttc
     6901 gcgcattcgt tcgagcaagt ccgtgccctt gatgccatct ggaaaaccag catgattgtg
     6961 actgcagggg atccacgcgg ctcggctctt gccactatcg acgacgagaa tgtcgagttg
     7021 aaaccgggca aggtagattg ccgccgtgag gcctgcaggt ccgccgccaa cgacgaggca
     7081 gtcgagtatt ggctcattca tgcgtcgccc aatggattgt gttagcggcg gttccactat
     7141 gagcttttcc gcatcggttc tgaccctcta cccggaaatg ttcccaggac ccctcggttc
     7201 gagccttgct ggacgggcgc taagcgaggg catctggagc ctttccgtca ccaacatccg
     7261 tgattttgct accgacaagc atcacagcgt cgacgacacg cccgccggcg ggggtgcagg
     7321 gatggtcctt cgcccagatg tcctcgccgc atcgctcgat agcgtttcgg atggtcgtcc
     7381 aatgcttgca ctgacgccgc gcggccgacc gctcacccaa gcgcgcgtcc ggaagctcgc
     7441 gagcggcgcg ggagtgatcc tcctctgtgg gcgattcgaa ggtttcgacg agcggatctt
     7501 tgaggcaagg gcgctcgagc ccgtctcaat tggcgattat gtgctctccg gcggggaagt
     7561 tgcggcgatg gtaatcctcg acgcttgcgt acgcctcctt cccggggtaa tgggcgcggc
     7621 ctccagcgga gaggaggaaa gcttcgagac ggggcttttg gaatatccgc attatacccg
     7681 gcctgtcatt tgggaagggc gcacgatccc cgaagtgctg cgatcggggg atcatgcgaa
     7741 gatcgcggcg tggcgacacg aacgagcggt ccaagataca cggctatggc ggccggacct
     7801 gatcgagcgc cacgggggcg catcgcaggc accgccctct ggcgcgcggc gacgagatac
     7861 gaaggctgat ttgaaatgaa cctgatcgag accctggagc gcgaagcgat cgacgctctg
     7921 accaaggaca agcccgtccc cgaattccgc cccggcgaca cgctgcgcgt cg
//
LOCUS       DASRBJ010000116         4843 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_470322,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000116 DASRBJ010000000
VERSION     DASRBJ010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4843
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470322"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..210
                     /locus_tag="VE968_03320"
     CDS             <1..210
                     /locus_tag="VE968_03320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020820577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HZU50885.1"
                     /translation="EFDILRMLIEHAGQVVTHRRLLIAGWNNPTVDQQYLRGYIALLR
                     QKLEEDPSEPKIVLSEPGVGYRLAA"
     gene            complement(538..696)
                     /locus_tag="VE968_03325"
     CDS             complement(538..696)
                     /locus_tag="VE968_03325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50886.1"
                     /translation="MQRHGVDPRGTAGKFVMVAEILDLRVLLTAVDVEQAVVSAMIDN
                     RVLRLGNF"
     gene            854..1345
                     /locus_tag="VE968_03330"
     CDS             854..1345
                     /locus_tag="VE968_03330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50887.1"
                     /translation="MIRHRRQITFSWPHLLWMLVAMFLLAVDWVSNWDYRTFGNLSLL
                     EISSEFLFVMLNYFFCALVSPDFEGGETYDMKLFHDTEGPTYMLVFLAAVAIALVENF
                     VAGEKLGITKEGAENALVLFQLPLGLLPLFVKRAWVQIVAPAVILMTIVAYGAMFYPV
                     LAK"
     gene            1425..2552
                     /gene="tgt"
                     /locus_tag="VE968_03335"
     CDS             1425..2552
                     /gene="tgt"
                     /locus_tag="VE968_03335"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HZU50888.1"
                     /translation="MTRFSFNISATDGTARTGIIAMQRGEIRTPAFMPVGTAATVKAM
                     RPEEVRASGADIILGNTYHLMLRPGAERITKLGGLHKFMGWERPILTDSGGYQVMSLS
                     ELTKVTEEGVAFASHLDGSRHMLSPERSMEVQRLLGSDMVMQFDQLVPTTSTREEQAE
                     AMERSIRWGKRSREEFDRGGEHAEQAAIFGIQQGALDRDLRRASSEALIDIGFDGYAV
                     GGLAVGEGQEAMLGCLDFAVDMLPADKPRYLMGVGKPDDIVEAVVRGIDMFDCVLPTR
                     SGRTGQAFTADGPINMRNARFAEDNDPIEPACPCPACTKFERAYVHHLVKSGEILGAM
                     LMTQHNLWFYQRMMQGLRDAIAGQHLSEFAATFLGRYRSKP"
     gene            2613..3155
                     /locus_tag="VE968_03340"
     CDS             2613..3155
                     /locus_tag="VE968_03340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50889.1"
                     /translation="MRHLFAVSLGSWMIASAATAAPAPKESWGKAGITLAQYRQDSLE
                     CGLKGYYTDISKTDDAKAFVNASKQLDAITTGASAPMTLGSNATGPDTTVDQMAQYAD
                     EQQHIVDNVRPDERFKSIKKTLESAADQCLISRGYSKFELTDDQRHALRHLKAGSDQR
                     RQYLYSLASNPTVLQSQRAP"
     gene            complement(3293..4210)
                     /gene="yghU"
                     /locus_tag="VE968_03345"
     CDS             complement(3293..4210)
                     /gene="yghU"
                     /locus_tag="VE968_03345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HZU50890.1"
                     /translation="MTDSSSYVLPKVWKWEQPSGGQFANINRPIAGPTHERELPVGKH
                     PFQLYSLATPNGQKVSIMFEELLAKGHKDADYDAWPIRIGEGDQFGSGFVEVNPNSKI
                     PALVDRSGKKPVRVFESGAILLYLAEKFGEFLPVSGPERAETLSWLFWQMGSAPFLGG
                     GFGHFFAYAPEKFEYPINRYSMEAKRQFDVLNRRLATSEYIAGPDYTIADIAIWPWYG
                     GVALGRSYEGADVFLATNEYEHVMRWARQIDARPAVKRGRIVNKMTGEESEQLHERHD
                     ASDFELRTEDKIRRTVEAEDLAAVRDDAI"
     gene            complement(4290..>4843)
                     /locus_tag="VE968_03350"
     CDS             complement(4290..>4843)
                     /locus_tag="VE968_03350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HZU50891.1"
                     /translation="SGFAAGQIQGDMDQSDRIAEFDRFKKDEITVLVASDVAARGLDV
                     KGVSHVINFDVPWQPDDYVHRIGRTGRAGMKGIAITLATRADSEAIERIEKLIGHKIP
                     RTGEPPNEQATDVATKERTPKAKAEKARAPAEAKQERQQPTRKSKPHGKTESAPEDRS
                     PVVEDISSDWNGPLPSFLSVSAG"
BASE COUNT          864 a         1494 c         1528 g          957 t
ORIGIN      
        1 gagttcgaca tcttgagaat gctgatcgag catgctggtc aggtcgtcac tcatcgacga
       61 ctgctgatcg ccggatggaa caatccgacc gtggatcagc aatatttgcg cggctacatc
      121 gcactgctgc ggcaaaagct cgaagaggat ccgtcagagc cgaagatcgt cctgtccgag
      181 ccgggcgttg gatatcgact ggcggcttag ccgccgttgg aatcccataa taacgcgagc
      241 gctgccaatc ggttacccgc attctcggaa gaaatttcga gtgaaacctc aacccgacag
      301 gcggtcttcg gacaggcagg atctcgacgg ccgcgaccgg cggctgatga ccatgctgga
      361 agagatccgg gctcgccgcc tatctttaga gcgcgactgg ctcagtgggg tcctctgggt
      421 gctggtgatt ctcactctgg ccggcggcgc ggttctcctg tgggcactcg ccggttgaag
      481 ccgcacctcc tggtccgagc ggcacttgca acgcaactgc tgccggcgtg ctctccgtca
      541 gaagtttcca agccgcaaca cgcggttgtc tatcattgcg ctcacgaccg cctgctccac
      601 gtccacagcg gtgaggagca cgcgaaggtc gagtatctcg gcgaccatta cgaacttgcc
      661 cgccgtcccg cggggatcaa caccgtgtcg ctgcatccta ctgaagcgga gcgagagcgg
      721 atcatgggag cgctggcgcg ggcgcggcag gacaacgcat ttctgacatt catgtcaggc
      781 gtcttcttgc gagcttccga agacgtgggc gtactcgctc gcgctggcgc acctgctgtt
      841 tgcgtggacg cgaatgatcc gtcaccggcg tcagatcacc ttctcgtggc cgcatcttct
      901 ctggatgctc gtcgccatgt tcctccttgc tgtcgattgg gttagcaact gggattatcg
      961 aacgttcggt aacctctcgt tgctcgagat cagcagcgag ttcctgttcg tgatgctgaa
     1021 ctacttcttt tgcgcgctcg tcagtcccga ctttgaggga ggcgagacct acgacatgaa
     1081 gctgttccac gacaccgagg gcccaaccta catgcttgtc tttctggcgg ccgtggcaat
     1141 cgctctcgtc gaaaatttcg tggcaggcga gaagttgggg atcaccaaag aaggcgcgga
     1201 aaacgctttg gtgctctttc aattgccatt gggtctgctg ccgttgttcg tgaagcgagc
     1261 atgggttcag attgtcgcac cggcagtcat cctgatgacc atcgttgcgt atggcgcaat
     1321 gttctatccc gtgttggcga aataggacca acgtccgctt tccacccata gccagaaatt
     1381 cgctgtgctc ttgcacgccg gagttactgc gataagcgcg ccgcgtgacc cgcttttcct
     1441 tcaacatctc cgccacggat gggaccgcgc gcactggcat tatcgccatg cagcgcgggg
     1501 agatccgcac gccggcgttc atgccggtgg gtactgccgc gacggtcaag gcgatgcggc
     1561 cggaggaggt gcgggcgagc ggcgcggaca tcatcctcgg caatacctac catctgatgc
     1621 tccggccggg tgcggaacgg attacgaagc tcggcgggct gcacaagttc atgggttggg
     1681 agcggccgat cctcaccgac agcggcggct atcaggtgat gagcctgtcg gagctgacca
     1741 aagtgacaga agagggggtg gcgttcgcca gccatctcga tggatcgcgg cacatgcttt
     1801 cgccggaacg gtcgatggag gttcagcggc tgctcggcag cgacatggtg atgcagttcg
     1861 atcagctcgt accgacgacc tccacgcgcg aggagcaggc ggaagcgatg gagcggtcga
     1921 tccgctgggg gaagcgatcg cgcgaggaat tcgatcgcgg aggcgagcac gccgagcagg
     1981 cggcgatttt cggaatccag cagggcgcgc tcgaccggga cctgcgccgc gcgtcctcgg
     2041 aggccctgat cgacatcggc ttcgacggtt atgcagtcgg cgggctcgcg gtcggcgagg
     2101 ggcaggaggc gatgctcggc tgcctcgatt tcgcggtcga catgctgccc gccgacaagc
     2161 cccgctacct catgggcgtc ggcaagcccg acgacatcgt cgaagcggta gtccgcggaa
     2221 tcgacatgtt cgactgcgtc cttccaacgc gctccggccg caccggccag gcgttcaccg
     2281 ccgacgggcc gatcaacatg cgcaacgccc gcttcgccga agataacgat ccaatagagc
     2341 cggcatgccc gtgcccggcg tgcacgaagt tcgagcgcgc ctacgtccac cacctggtga
     2401 agtcgggcga gatcctcggc gcgatgctga tgacgcagca caatctgtgg ttctaccagc
     2461 gcatgatgca gggactgcgc gatgcgatcg ccgggcagca cctgagcgaa ttcgccgcca
     2521 cctttctagg gcgatatcgg tccaaaccct gacgcgattg cccaccctcc accacgatgg
     2581 tagcgttacc agaacaggaa aggagacgac cgatgcgtca cctgttcgcc gtctcgctcg
     2641 gatcgtggat gattgcgtct gccgcgacag ccgcgcctgc gcccaaggaa agctggggca
     2701 aggcagggat tacgctcgcg cagtaccggc aggactcgct cgaatgcggt ctcaagggct
     2761 attacaccga catttcgaag accgatgatg cgaaggcgtt cgtcaacgcg tccaagcaac
     2821 tcgacgcgat caccacgggc gcgtccgcgc cgatgacgct cgggagcaac gcgacggggc
     2881 ccgacaccac cgtcgatcag atggcgcaat atgcggacga gcagcagcat atcgtggaca
     2941 atgttcggcc ggacgagcgc ttcaagagca tcaagaagac gctggagtcg gcggccgacc
     3001 agtgcctgat cagccgcggc tattcgaagt tcgagctgac tgacgatcag cgtcacgcgc
     3061 tgcggcacct gaaagcggga tcggaccagc gccggcagta tctctacagt ctcgcgagca
     3121 acccgacggt gctgcagagc cagagagcgc cttagcgtgt tcctcccccg ttgcggggga
     3181 ggattgcgaa gcttggcggc ttgccgctta gcgcagcttg gagaggggat cggccctctc
     3241 cccgctcgcg cttccgcgcg agtcgaccct ctcccgcaaa ggggagaggg tgttaaatcg
     3301 cgtcgtccct gacggctgcg agatcttcgg cctcgaccgt ccgccggatc ttgtcctcag
     3361 ttcgaagctc gaagtcgctc gcgtcgtggc gttcgtggag ctgttcgctt tcctcgcctg
     3421 tcatcttgtt gacgatccgg ccgcgcttca ccgccgggcg ggcatcgatc tgcctggccc
     3481 agcgcatgac atgctcatat tcattcgtgg ccaggaagac gtcggcgcct tcataggacc
     3541 gaccgagcgc cacgccgccg taccacggcc agatggcgat atcggcgatc gtgtagtccg
     3601 gtcccgcgat atattcgctt gtcgcgaggc gtcggttgag cacgtcgaat tgccgcttgg
     3661 cttccatcga atagcggttg atcggatatt cgaacttctc gggcgcgtaa gcgaagaaat
     3721 ggccgaagcc gccgccgagg aagggcgcgc tgcccatctg ccagaacagc cacgagagcg
     3781 tctccgcgcg ctccgggccc gatacgggaa ggaactcgcc gaatttctcc gcgaggtaga
     3841 gcaggatcgc gccggattcg aacacccgca ccggcttctt cccgcttcga tcgaccagcg
     3901 ctggaatctt gctgttgggg tttacctcga cgaacccgct tccgaactgg tcaccctcgc
     3961 cgatccggat cggccacgca tcatagtcgg catccttgtg gcccttggcg agcagttcct
     4021 cgaacatgat cgagaccttc tggccgttgg gcgtggcgag cgaatagagc tggaacgggt
     4081 gcttgccgac gggcagttcc ctttcgtgcg tcggaccggc aatcggacgg ttgatattcg
     4141 cgaactgacc gccgcttggc tgctcccatt tccagacttt cgggagaacg taactgctgc
     4201 tgtcggtcat tggggttcct ttgtcactcc agccctgaaa ggcgagctag gaaccgcggc
     4261 agcagctttc cagtatcagt tgtgtgccct taaccggcgc tcaccgacag gaaggaagga
     4321 agcggtccgt tccagtcgct gctgatgtcc tcgacgacgg gcgagcggtc ctccggcgcg
     4381 gattcggtct tgccgtgcgg ctttgacttg cgcgttggct gctgcctttc ctgcttcgcc
     4441 tcggcagggg cgcgggcttt ctcggctttc gctttgggcg tccgctcctt cgtcgccacg
     4501 tcggtagctt gctcattcgg cggttcgccc gtgcgcggga tcttgtggcc gataagcttc
     4561 tcgatccgtt cgatcgcttc gctgtccgct cgcgtcgcaa gcgtaatcgc aatgcccttc
     4621 atgccggcgc ggcccgtacg accgatgcgg tggacatagt cgtcgggctg ccagggtacg
     4681 tcgaagttga tcacatggct gacgcctttg acgtcgagcc cgcgagcggc gacgtcggag
     4741 gcgaccagaa ccgtgatctc gtccttcttg aagcggtcga actcggcgat acggtcggac
     4801 tggtccatgt cgccttggat ctgaccggcc gcgaaacccg aac
//
LOCUS       DASRBJ010000117         3512 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_676758,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000117 DASRBJ010000000
VERSION     DASRBJ010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3512
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_676758"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..217)
                     /locus_tag="VE968_03355"
     CDS             complement(<1..217)
                     /locus_tag="VE968_03355"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444594.1"
                     /note="catalyzes the formation of N-carbamoyl-L-aspartate
                     from (S)-dihydroorotate in pyrimidine biosynthesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HZU50892.1"
                     /translation="MASQTLTIRKPDDWHVHLRDGAMLRRVAPYTARQFGRAIVMPNL
                     VPPITTVEAARAYRKRILQVTEPGFTPL"
     gene            241..954
                     /locus_tag="VE968_03360"
     CDS             241..954
                     /locus_tag="VE968_03360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003047715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein"
                     /protein_id="HZU50893.1"
                     /translation="MAATTLADRSLLRLSGDDVLGFLQGLVTNDLRGDLPVWTGLLTP
                     QGKCLFDFIVWRDGDDILLDCERSSADELMKRLAMYRLRRAIRIERDGDRSVHWSKEK
                     GMGTVDPRLPELGSRWIAAPSEPASGWREHRLQLGVCEGSAELRDILWLECNALELNG
                     VSFTKGCFVGQENTARMNWRQKINRRLFVCRGAARGRFQAEYPDLGLFVVHERVESVP
                     ASAILPDWLKSAIAHPTSA"
     gene            complement(936..1610)
                     /locus_tag="VE968_03365"
     CDS             complement(936..1610)
                     /locus_tag="VE968_03365"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007710135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HZU50894.1"
                     /translation="MAHHSETAVVDLSHVIDNGMTTYPGLPGPRICDFWDRESSAQNY
                     DDGSSFHIARIDMVANTGTYLDAPFHRFETGFDLADLPLRSIANIPGIIVQRPFEEGL
                     ETRAEHFANLDVRGKAVLVHTGWDQYWRRASYGVDHPFLASDAADWLIENGAVLVGID
                     SNNIDDTRRRERPVHTRLLGAAIPICEHLTRLADVRGERFQFSAVPARLRGVGSFPVR
                     AYALVG"
     gene            complement(1565..1816)
                     /locus_tag="VE968_03370"
     CDS             complement(1565..1816)
                     /locus_tag="VE968_03370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006967208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50895.1"
                     /translation="MEIAGWVGALLILLAYLFLSTGRFGAQSLLYQGMNIVGAAGFVI
                     NGWWHRAVPSAALNVLWLLIGAFASWRIIRKRRSSTSAT"
     gene            complement(1834..>3512)
                     /gene="acnA"
                     /locus_tag="VE968_03375"
     CDS             complement(1834..>3512)
                     /gene="acnA"
                     /locus_tag="VE968_03375"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HZU50896.1"
                     /translation="RDEQQIALVRAYAQAQGLWRAADSPEPLFTDTLELDMATIEPSL
                     AGPKRPQDRVLLSDVDNKFNADLEQVYHKGSAPRVAVEGEDFDFGNGDVAIAAITSCT
                     NTSNPSVLIGAGLVARKARQKGLNVKPWVKTSLAPGSQVVSDYLKESGLQEDLDALGF
                     DLVGYGCTTCIGNSGPLPEPISKAINENDLVAVSVLSGNRNFEGRVSPDCRANYLASP
                     PLVVAYALKGTVRADIVKEPIGAASNGEPVYLKDIWPTNDEIRSLIDAHVHSEMFRRR
                     YADVYRGDERWRKIEITGGDTYSWPALSTYIQNPPYFVGMTMEPTPLTDIERARPLAI
                     FGDSITTDHISPAGSIKPDSPAGRYLLEHGVTRGEFNSYGSRRGNHEVMMRGTFANIR
                     IRNRMLNDVEGGFTKYAPTGEVMPIYDAAMLYKHDGRPLVVIAGKEYGTGSSRDWAAK
                     GTVLLGVRAVIAESFERIHRSNLVGMGVLPLQFREGENAETLGLTGAEKYSIEGVGEI
                     QPRQDVQVKVTRDNGEEFSFVARCRIDTFNELEYFRSGGILQFVLRRLAA"
BASE COUNT          692 a         1040 c         1072 g          708 t
ORIGIN      
        1 tgagcggcgt gaaccccggc tcagtcacct ggagaatgcg cttccgatac gctcgcgcag
       61 cttcgacagt cgtgattggc ggcacaaggt tgggcatgac gatagcgcgt ccaaactgtc
      121 gggcggtata gggcgcaacc cgacggagca tggcaccatc gcgaagatgg acatgccagt
      181 cgtccggctt tcgtatcgtc agagtttgcg atgccacgag cggctcccta actgatgcct
      241 atggctgcca ccacccttgc cgaccgatcg ctgttgcgcc tttcgggcga cgacgtgctc
      301 ggctttctcc agggacttgt taccaatgac cttcgtggtg atctccccgt gtggacgggg
      361 ctactaacgc cccaaggcaa gtgcctgttc gacttcatcg tctggagaga tggcgatgac
      421 atccttctcg actgcgaacg atcgagcgca gacgagttga tgaagcgcct cgcaatgtac
      481 cgcttgcgac gagcgatccg catcgagcgc gatggcgacc gaagcgttca ctggtcaaag
      541 gaaaagggaa tggggacagt cgacccccgt ctacccgagc tcgggagtcg gtggatcgcc
      601 gcaccgtccg aaccagcaag tggatggcgt gaacatcggc ttcaactagg ggtatgcgag
      661 ggaagtgccg agctccgaga catcctgtgg ctcgaatgca atgcgctcga gctgaacggt
      721 gttagcttca ccaaggggtg cttcgtcggt caggaaaaca ctgcccggat gaactggcga
      781 caaaagatca atcggcggct tttcgtttgc cgcggggcgg cgcgcggccg gttccaggcg
      841 gaatatcccg acctcggact gttcgtcgtt cacgagcgag ttgagtccgt tccagcaagc
      901 gcaattctgc cagactggct caaatcggcc attgctcacc caacgagcgc gtaagcgcga
      961 acgggaaacg agccgacgcc ccttagcctt gctggaactg ccgagaattg gaaccgttcg
     1021 cctcgaacgt cggccaatcg cgtgaggtgc tcgcagatcg gtatcgccgc gccaagcaag
     1081 cgtgtgtgga ctggccgttc gcggcggcgc gtgtcgtcaa tattgttgct gtctatgccg
     1141 acgagaaccg ccccattctc gatgagccag tcggcggcat cgctcgccag gaatggatgg
     1201 tcgacgccgt agcttgccct tcgccagtat tggtcccagc cggtgtgaac caggacggcc
     1261 ttcccgcgca cgtcaaggtt cgcaaaatgt tccgcgcgcg tttccagtcc ctcttcaaat
     1321 ggtcgttgaa caatgattcc gggaatgttc gcaattgatc gcaggggcaa gtcagcgagg
     1381 tcaaagcctg tttcgaaccg gtgaaacggc gcgtcgagat aggtcccggt attcgcgacc
     1441 atatcaattc gtgcgatatg gaagctcgaa ccatcgtcgt aattctgcgc cgagctctct
     1501 cggtcccaga agtcgcaaat gcgtgggccc ggcaatccgg gataggttgt catcccattg
     1561 tcgattacgt ggctgaggtc gacgaccgcc gtttccgaat gatgcgccat gatgcgaatg
     1621 ctccgatcag cagccatagc acgttgagcg cggcggaggg gacggcccgg tgccaccagc
     1681 cattgatcac gaatcccgct gcaccgacga tgttcatgcc ctggtacaat agcgactgag
     1741 cgccaaatcg accggtcgag aggaacagat aggcgaggag gatcaggagt gcgccgaccc
     1801 agccggcaat ctccaccgcg agctggaggg cggtcaggcg gcgagtctcc ttagcacgaa
     1861 ctggagaatt ccgccggatc ggaaatattc aagctcgttg aaggtgtcga tccggcagcg
     1921 cgcgacgaag ctgaactctt caccattatc tcgcgtgacc ttcacttgaa catcctgccg
     1981 cggctggatt tcgccgacgc cttcgatcga atatttctcg gcaccggtaa ggccgagggt
     2041 ctcggcattc tcgccctcgc gaaactgcag tgggaggacg cccatgccga cgagattgga
     2101 gcgatggatg cgctcgaaac tctcggcaat gaccgcgcgg acgccaagga gcactgtgcc
     2161 cttagccgcc cagtcgcgcg aacttccggt gccatattcc ttgccggcga tcacgaccaa
     2221 tggccgacca tcgtgcttgt agagcattgc agcatcatag atcggcatga cctcgccggt
     2281 cggcgcatat ttggtaaagc ctccctcgac atcattgagc atccggttgc gaatacggat
     2341 gttcgcgaag gtcccacgca tcatcacttc gtgattgccg cgcctcgacc cgtagctgtt
     2401 gaactctccc cgagtgacgc cgtgctcgag aagataacga ccagcggggc tatccggctt
     2461 gatcgaaccc gctggcgaaa tgtgatcggt ggtaatcgag tctccgaaaa tcgccagcgg
     2521 ccgtgctcgc tcgatgtcgg tgagcggcgt cggctccatc gtcattccta cgaagtaggg
     2581 cgggttttgg atgtaggtcg acaatgcggg ccagctatag gtgtcgccgc cggtaatttc
     2641 gattttccgc caacgctcgt cgcctcgata cacgtcggcg tagcgccggc ggaacatctc
     2701 ggaatggaca tgtgcgtcga tcagcgaacg aatttcgtca ttcgttggcc agatgtcctt
     2761 gaggtaaacg ggttcgccgt tcgaagcagc tccaatcggc tccttgacga tgtctgcgcg
     2821 aaccgttccc tttaacgcat aggcgacgac gagtggcggc gaggcaaggt aattcgcgcg
     2881 gcaatccggc gacacccgtc cttcgaaatt gcgattgccg gaaagaacgc tgaccgcgac
     2941 gaggtcattt tcgttaatcg ccttgctaat cggctccggc agtggaccgg agttgccgat
     3001 gcaggtcgtg cagccgtaac cgactaggtc aaatccgagg gcgtcgagat cttcctgaag
     3061 gccactctcc ttcagatagt cgctgactac ctggctgccc ggcgcgaggc tggtcttaac
     3121 ccacggcttg acgttgagcc ctttttgccg agctttccgc gcgacgaggc cggctccgat
     3181 aaggacggac gggttcgacg tattggtgca gctggtaatc gccgcgatcg ccacatcacc
     3241 attgccgaag tcaaaatctt cgccctcgac ggcaacgcgc ggcgcgctgc ccttgtgata
     3301 cacttgctca aggtccgcgt tgaacttgtt atccacgtcg ctcagcagga cgcggtcctg
     3361 cggccgcttc gggccggcaa gcgatggttc gatggttgcc atgtcgagct caagggtgtc
     3421 ggtgaacagt ggctcgggcg aatcggcggc gcgccagagc ccctgcgcct gcgcgtaggc
     3481 gcgcacgagc gcgatctgct gttcatcgcg gc
//
LOCUS       DASRBJ010000118         2983 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_572845,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000118 DASRBJ010000000
VERSION     DASRBJ010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2983
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_572845"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(263..589)
                     /locus_tag="VE968_03380"
     CDS             complement(263..589)
                     /locus_tag="VE968_03380"
                     /inference="COORDINATES: protein motif:HMM:NF017016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HZU50897.1"
                     /translation="MATMVDLTIAGRVYQVACREGEEDNLREAARLVDGKSREALAGL
                     GTLSEARQFLFASLLLADQLIEKKPDAVEAAASSADPALIRRVESLANRLESVAMTLE
                     NEDTSA"
     gene            complement(589..759)
                     /locus_tag="VE968_03385"
     CDS             complement(589..759)
                     /locus_tag="VE968_03385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50898.1"
                     /translation="MDDRQLDAAFDRAERALMRIERALSMKRPAARDEELRAKVREVV
                     EELDELIRDAAA"
     gene            892..2880
                     /gene="tkt"
                     /locus_tag="VE968_03390"
     CDS             892..2880
                     /gene="tkt"
                     /locus_tag="VE968_03390"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HZU50899.1"
                     /translation="MQPTDRSLANAIRALAMDAVETANSGHPGMPMGMADAATTLFRR
                     HLKFDASDPRWPDRDRFILSAGHGSMLIYALLYLTGYERPTLEDIKRFRQLGSPTAGH
                     PENFELPGIEVTTGPLGQGVAMAVGMAIAERHLNAVFGDELVDHRTFVIAGDGDLMEG
                     INHEAIGLAGNLKLGRLIVLWDDNEITIDGSTELSRNEDVLARHAAAQWHVGECDGLN
                     GDDVSRAIEEALADPRPSLIRCKTIIGYGAPNKQGTAATHGAALGRNEVEAARKQLGL
                     EDKEFTVPDDVLTAWRAAGKRGGVDHALWNERLEQSGRKVEFEARIAGNVSDAWLRPY
                     LSKLFADNKPVATRKASEMALEAINAAIPATVGGSADLTGSNNTKTKALEPLTAQNYA
                     GRYIYYGIREFGMAAAMNGMALHGGVIPYGGTFLAFTDYARPAIRLSALQRARVIYVM
                     THDSIGLGEDGPTHQPIEHLQSLRAMPGIDLFRPADAVETAECWALALTSDKPSILAL
                     SRQNLPPVRVPGAERNLCAFGAYRLKTAETNRRVIILATGSEVEIALAAAQQLESQGI
                     GTDVVSMPCAERFDLQPAEYREDILPDVSNREILRVSIEAGTTFGWERYTGLHGLRIG
                     IDRFGVSAPAADAYNYFGLTSEKVATRITDFMRTRGIQ"
     gene            2877..>2983
                     /locus_tag="VE968_03395"
     CDS             2877..>2983
                     /locus_tag="VE968_03395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde 3-phosphate dehydrogenase
                     NAD-binding domain-containing protein"
                     /protein_id="HZU50900.1"
                     /translation="MTKVAINGFGRIGRLVARAILERPDCGLELVSVNDL"
BASE COUNT          587 a          905 c          917 g          574 t
ORIGIN      
        1 cgaacaaagg ccttgcgcga ctcgagtgcg atttggcgaa gcttctcctt cgaagcggat
       61 tccatctcgg gctgggcgcc ggggaaagtc ggaagtgacg ggaccaccat ggccgtttgc
      121 cctaaaatcc tctgacgccc aaacgtcagg tgggcgccga ttgctccgga ccaggatccg
      181 ggcagggtca gctccctagg atgttctatc gcctcaggga ttttccgaag gctcgcaccg
      241 ggtagtgccc gtcgaacctg atctaggcgc tcgtgtcctc gttctcaagc gtcatcgcga
      301 ccgactcgag tcggttcgcg agcgactcga cccggcggat gagtgccggg tcagcgctcg
      361 aagcggctgc ctcaacagcg tcgggtttct tctctatcag ctggtcagca aggagcagcg
      421 aggcaaacag gaattgtcgt gcttcgctca acgtgccaag cccggcgagt gcttcgcggc
      481 tcttgccgtc gacgagccga gcggcctcgc gaagattgtc ttcctcgcct tcgcgacaag
      541 cgacctgata gacgcggccc gcaatggtga ggtcaaccat cgtcgccatt atgccgccgc
      601 atcgcggata agttcatcga gttcctcgac gacctcccgc accttggccc gaagttcctc
      661 gtcacgcgca gcgggtcgct tcatggaaag agcgcgctcg atccgcatga gcgcccgctc
      721 ggctcgatcg aatgctgcgt ctagttggcg atcatccatc gattccccgc tacgcaactt
      781 ggctttgccc ggcaagcatt tgccgctgca atttgacgcg tggcgcaagg cggctaaggg
      841 agccgcacca gcgttcggaa tcccggacgg aagaacccca aacggagcgt catgcagccg
      901 accgatcgca gcctcgccaa cgccattcgc gctctagcga tggacgcggt ggagaccgcg
      961 aacagtggtc accctggtat gcccatgggg atggccgacg cagccacgac tctctttcgt
     1021 cgacatctga aattcgacgc ttcggatcca cgctggccgg atcgcgatcg cttcattctc
     1081 tccgcggggc atggatcgat gctgatctat gccttgcttt atctcacggg ctacgagcga
     1141 cccactcttg aggacatcaa gaggttcagg cagcttggtt cgccgaccgc cggtcatcct
     1201 gagaatttcg agctgcccgg catcgaggtc acgaccggcc cgctcgggca gggcgttgca
     1261 atggccgtcg gaatggcgat cgccgagcgg cacctcaatg cggtctttgg cgacgagctt
     1321 gtcgaccatc gaacgttcgt gatcgccggc gatggagacc tcatggaagg catcaaccat
     1381 gaggcaattg gacttgccgg caacctcaag cttggtcgcc tcatcgtcct ttgggatgat
     1441 aatgagatca ccatcgatgg ctcgacggaa ttgtcgcgca acgaggacgt ccttgcgcgc
     1501 cacgcggcag cgcagtggca cgtcggcgag tgcgatggcc tcaacgggga tgatgtcagc
     1561 cgagcgatcg aggaggcatt ggctgatcca cgaccaagcc tcattcgatg caagacgatc
     1621 atcggttatg gcgcaccgaa caagcaaggc acggcagcga cccatggtgc tgcgctaggc
     1681 aggaacgagg tggaagctgc tcgcaagcag ctcggtctcg aagacaagga attcaccgta
     1741 cccgacgacg tccttacggc atggcgtgcg gcgggcaagc gcggcggtgt tgatcacgcg
     1801 ctctggaacg aacggctcga gcaaagcggg cgcaaggtgg aattcgaggc gcggatcgcg
     1861 ggtaacgtca gcgatgcatg gctaaggccg tatctttcca aattgttcgc cgacaacaag
     1921 ccggtggcaa cgcgcaaggc gtctgaaatg gcgcttgagg caatcaacgc ggcaatcccg
     1981 gcgaccgtcg gcggctcggc agaccttacc gggtcaaaca acacgaagac caaggcgcta
     2041 gagccactga cggcccaaaa ttacgcgggg cggtacattt actacggaat ccgcgaattc
     2101 ggcatggcgg cggcaatgaa cggaatggcg ctgcatggcg gtgtcattcc ttacggtggc
     2161 acttttcttg cgtttaccga ttatgcccgt cccgcaatcc gcctgtcggc cctgcagcgc
     2221 gcaagggtca tatacgtcat gactcatgac tcgatcgggc ttggcgaaga tggaccgacc
     2281 caccagccca tcgagcattt gcaaagcctg cgtgccatgc ctggcatcga tctgtttcgt
     2341 ccggccgatg cggtggagac cgccgaatgt tgggcccttg cacttacgag cgataagccg
     2401 agcattcttg ccttgagccg gcagaacttg ccgcccgtgc gggttccggg cgctgaacgc
     2461 aatctctgcg cttttggagc ttatcgtctg aaaacggccg agaccaaccg ccgcgtgatc
     2521 atccttgcga ccggttcaga ggtggaaatc gcgcttgctg cggcgcagca gcttgaatcc
     2581 cagggcatcg gcaccgacgt cgtttccatg ccctgcgccg aacgcttcga tctgcagccg
     2641 gctgagtatc gcgaggacat cctcccggat gtgagcaatc gcgagattct gcgcgtctcg
     2701 atcgaggcgg gaacgacgtt cgggtgggag cgctatacgg gccttcacgg gcttcggatc
     2761 ggtatcgacc gtttcggagt ctcggctccg gcggctgatg cctacaatta tttcgggctg
     2821 accagcgaga aggtcgccac gcgcattacg gacttcatga gaacaagagg aatccaatga
     2881 ccaaagtcgc catcaacgga tttggccgta tcggccgcct tgtcgcccgt gcaatcctcg
     2941 agcggccgga ctgcggactg gaacttgtca gcgtcaacga tct
//
LOCUS       DASRBJ010000119         7927 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_522192,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000119 DASRBJ010000000
VERSION     DASRBJ010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7927
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_522192"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(130..1764)
                     /locus_tag="VE968_03400"
     CDS             complement(130..1764)
                     /locus_tag="VE968_03400"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011414220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HZU50901.1"
                     /translation="MARFIFVTGGVVSSLGKGLLSASLGALLQARGYKVRIRKFDPYL
                     NVDPGTMSPYQHGEVYVTDDGAETDLDLGHYERFTGVSSRQSDNITTGRIYRDIIAKE
                     RRGDFLGATVQVIPHVTNAIKEFALADTGGCDFVICEIGGTVGDIESLPFIESIRQLR
                     NDLGRDKTVSVHTTLVPWIAAAGELKTKPTQQSVRELSSLGVQPEVLLCRCDRPLPEA
                     EREKIALLCNVRKSAVIPALDARNIYDVPLQYHQAGLDDEVLNAFGINDARAPDLARW
                     NEIMDRIDHYESEVTIGVVGKYVGLPDAYKSLREALVHGGIANRTKVKIEWIDAEVFE
                     HPQSDIVAELEPLHGILVPGGFGERGSEGKIASVKFAREREIPFFGICLGMQMACIEG
                     ARNLAGITEASTTEFGDTPEPVVGMITEWMSEEGLQKRAAGGDLGGTMRLGAYPAKLD
                     GNSRVRSIYGTDHISERHRHRYEVNIHYRDALEKAGLIFSGMSPDDQLPEIVERPDHP
                     WFIGVQFHPELKSRPFEPHPLFAGFIEAAVKQSRLV"
     gene            complement(1848..2261)
                     /gene="secG"
                     /locus_tag="VE968_03405"
     CDS             complement(1848..2261)
                     /gene="secG"
                     /locus_tag="VE968_03405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017184169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HZU50902.1"
                     /translation="MFAFLLIVQTLVAVALISVILMQRSEGGGLGVGGSSSGFMTARG
                     AADFLTRSTSVLGGLFIILSIVMAAIAGATRTPTKIDTSLAGKTSAPIEQTQPTPAQP
                     SPSQSAPAQQAPTPTGPTPANSSQNQQAPAVPLAQ"
     gene            complement(2464..2835)
                     /locus_tag="VE968_03410"
     CDS             complement(2464..2835)
                     /locus_tag="VE968_03410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50903.1"
                     /translation="MRLILGTFSTLGLGLALASAAAAQSVGMQVVDTSGAPVGTVIAI
                     NGDNVQIKTDKHDVLLPKSSFTLNNGKLLFGMTQAQLDQSRKRMPRPPRLLLQERLSK
                     VLQERRSARSTPSRAAMSRLL"
     gene            complement(2896..3651)
                     /gene="tpiA"
                     /locus_tag="VE968_03415"
     CDS             complement(2896..3651)
                     /gene="tpiA"
                     /locus_tag="VE968_03415"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003043856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HZU50904.1"
                     /translation="MRLKKLVAGNWKMHGLSSDLEEIKAIAAASEEYPGVDVALCVPA
                     ILIERAARAAVGFAIGGQDVHHAPKGAHTGCTSAQMLLDAGASLTIVGHSERREAQRE
                     SDPEVRAKSEAALAIGLSVILCVGESAHIRESGEAVSFVMAQLDGSLPANIETAGELA
                     IAYEPIWAIGTGKIPISDEIRAMHGAIRQKLREIHGNAGKDVRILYGGSVKSSNADEI
                     FQIAEVDGALVGGASLKAADFIPIVAAAQRAGD"
     gene            3753..5699
                     /locus_tag="VE968_03420"
     CDS             3753..5699
                     /locus_tag="VE968_03420"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HZU50905.1"
                     /translation="MLSFFRRVANSKIGTWVVAAIGLAILGGFALADLSNFGTGNLGF
                     GVGPGTLAKVGDQAVDEREMTDAMQRRLQTARQQQPTADYATIIADFYPVLEALIDDK
                     ALIAFSDANGFPLSKRLIDAEIATIPATKGYNGQFSEQAYQAFLAQQRMSDAQVREIL
                     AGGMLQRLLLTPVVTNPRIPLGMATPYTSMLLEQRDGEGAIVPADAFKGGLNPTDAQL
                     QQFYAANKSVRYMVPEQRVLRIAKIGPDQVSGVAASDQEIAAYYNQHKDDYAPKDTRS
                     LSQVVVPDQASAAAIAQRAKAGATLAAAAAPAGPNAAVSSLNDQTRTAYSGVAGDKAA
                     DAVFAAKTGDVVGPLQSQFGWLVVKVDSIKKGSGKTLDEARAEIAQKLNADKRKGALE
                     DLVDKVQNALDQGSNFEEAVSSAKLQASNTPLVTASGVSRADPSFKMTPDLAPILKAG
                     FEIAPNDPPEVVTLPGNAGYAVVSPGQVVPAAPAPLASIKDQVTSDWINQQALQRAGA
                     AAQQIAGKASSGMSLAEAIKAIGATIPPPRPISARRIQMTDQQGHTSAALKILFDTGI
                     GKARMAANPQGGGFFVVKVDKITPGNAISQPGLISQVTRQLNEAAAQDYAQQFLADMK
                     REMKVKRNESAIQAFRARLLSNGG"
     gene            5774..6418
                     /gene="lexA"
                     /locus_tag="VE968_03425"
     CDS             5774..6418
                     /gene="lexA"
                     /locus_tag="VE968_03425"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HZU50906.1"
                     /translation="MLTVKQRELLLFIEDRLKEGGVSPSFDEMREALDLKSKSGVHRL
                     ISALEERGFIRRLPNRARALEVVKLPETRPSTSAIRPVAPAAANDTMEIPLHGRIAAG
                     TPIEALQGTESFAVPAALLGPGEHYALEVAGDSMVDEGILDGDFALIRKVDTARDGEI
                     VVALIDNEEATLKTFRREGRMIRLDPANSRYEPQRYEEGRVRIQGRLAGLIRRY"
     gene            6692..>7927
                     /gene="gltX"
                     /locus_tag="VE968_03430"
     CDS             6692..>7927
                     /gene="gltX"
                     /locus_tag="VE968_03430"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HZU50907.1"
                     /translation="MSASETSRPVVTRFAPSPTGYLHIGGARTALFNWLYARHTGGKF
                     LLRIEDTDRVRSTKEAIDAILDGMRWLGLDWDGHEYYQSQFWARHAEIAHRLLERGAA
                     YRCYMTQEELAEQRELAQRERRPFRINSPWRDRQDEQNDRPFVIRLKAPREGETMIDD
                     QVQGRVTVQNAEIDDFILLRSDGTPTYMLAVVVDDHDMGVTHVIRGDDHLNNAFRQLA
                     IVRAMGWPEPTYAHVPLIHGADGAKLSKRHGAMGVDAYRDELGLLPEAVNNYLLRLGW
                     GHGDHEIIRQEQAIQWFDLAQVGKSPSRFDFKKLENLNGHYIREADDARLADLVAPKL
                     GLSAKEKELLVRAMPELKPRANTLNQLADGARFLFAKRPIEMDEAATMQLTSDARSVL
                     CGAYRALSALAVWDVASLEA"
BASE COUNT         1649 a         2369 c         2353 g         1556 t
ORIGIN      
        1 catggaacgc aaagaagccg agagcccaca ggatcagcag gatgatcgcg atcgtcagaa
       61 gcatcttata ttcctcccta gtgtcgcccg cgtaacggtc aaacgccggg cgcgttccaa
      121 aagaggaaat taaacgagac ggctctgctt gacggctgcc tcgatgaatc cggcaaataa
      181 cggatgcggt tcgaacgggc ggctcttgag ctcgggatgg aactgaacac cgataaacca
      241 gggatggtct ggccgttcga caatttccgg aagctgatcg tcgggcgaca ttcccgaaaa
      301 gatgaggccg gccttttcga gcgcatcgcg atagtgaatg ttcacttcgt agcgatgccg
      361 atggcgttcg ctgatatgat ccgtgccgta gattgagcgc acgcgactgt tcccatcgag
      421 cttggccgga tatgccccaa ggcgcatcgt tccgccaagg tcgccgcccg cagcgcgctt
      481 ctgaagccct tcctcgctca tccattcggt gatcatcccg acgacaggct caggcgtgtc
      541 gccgaattcc gtggtcgatg cttcggtgat gccagcgaga ttgcgtgcac cttcgatgca
      601 agccatctgc atgccaagac agattccgaa aaatggaatc tcacgctcgc gagcgaactt
      661 gacggaggcg attttgcctt cgcttccgcg ttcaccgaag ccgccgggaa cgaggatgcc
      721 atggagtggc tcaagctccg caactatgtc tgactgagga tgctcgaaga cttccgcgtc
      781 aatccactcg atcttgacct tcgtccgatt ggcaatgccg ccatggacga gtgcctcacg
      841 caagctctta taagcatcgg gaaggccgac atatttgccg acgacgccaa tcgtgacctc
      901 gctctcataa tgatcgatgc gatccatgat ctcattccag cgagcaagat caggggctcg
      961 cgcatcgtta atcccgaacg cgttcagcac ctcatcatca aggccggcct ggtgatactg
     1021 aagaggtacg tcatagatgt tgcgggcatc gagcgctgga atgaccgccg atttccgaac
     1081 gttgcataat aaggcgattt tctcacgctc ggcttcgggg agcgggcgat cgcaacgaca
     1141 gaggagtacc tcgggctgaa caccgaggct cgacaattcg cgaaccgatt gctgcgttgg
     1201 tttggtcttg agttcgcccg ccgcggcaat ccagggaacg agcgttgtat ggacgctgac
     1261 cgtcttgtcg cggccaagat cgttcctcag ctgtcggatc gattcgatga acggtaagct
     1321 ctcgatgtca ccgacggtgc caccgatttc gcagatcacg aagtcgcatc caccggtgtc
     1381 ggcaagcgcg aattccttga tggcattcgt gacatgcgga atgacttgga ccgtcgctcc
     1441 gaggaaatcg ccgcggcgct ctttggcgat gatgtcgcgg tagatcctgc ccgttgttat
     1501 attgtcggac tggcgcgacg agacgccggt gaagcgctcg taatggccaa ggtcaaggtc
     1561 ggtctcggct ccgtcgtccg tcacatagac ttcgccatgc tggtagggag acatcgttcc
     1621 cggatcgacg ttcagatagg gatcgaactt tcggatccga accttgtagc ctcgagcttg
     1681 gagaagcgcc ccgagggatg ctgaaagaag gcctttaccg agcgatgaca ccacgccgcc
     1741 ggtgacaaaa atgaaccgcg ccatgggatt cggggcttag ggggacaagc gccgggcgcg
     1801 caagccgtga gcgcgaaaat atttcagtgg ccgcccgcag gcacgactta ctgagccaac
     1861 ggtactgcag gcgcctgctg gttctgactc gaattcgccg gcgttgggcc cgtcggggtg
     1921 ggcgcctgct gggccggggc gctttggctc ggcgacggct gcgccggcgt cggctgagtc
     1981 tgctcgatcg gcgcgctcgt cttgccggcg agcgatgtat cgatcttcgt cggcgttcgc
     2041 gtcgcgccgg caattgccgc catgacgatt gatagaataa tgaaaaggcc gccaagcacg
     2101 gacgtcgacc gggtgaggaa atctgccgcg ccgcgagccg tcatgaagcc ggacgagcta
     2161 ccgccaacac caagtccgcc cccttcggaa cgctgcatca ggatgacgct gatcagcgca
     2221 acggcgacaa gggtctgaac aatcaacaaa aaggcgaaca tgcggtgctt tcgaaataag
     2281 atgcgcagcg cgacttagtc ggcactgcgc atcctttcaa ccgtgcttac ttgctggttg
     2341 tagggctgcc cgtcgcgccg ttcacaagcg catcaagttg ttcggcagtg tagccaacgg
     2401 tcactgtgcc gtcggcgttg ccgcgaacac cagcgaccgg catctggagc ttcttcccgg
     2461 acgtcagagt aatcgtgaca ttgccgccct cgacggcgtc gatcttgccg accggcgttc
     2521 ctgcagaacc tttgacagtc gctcctggag caacagcctt ggcggacgcg gcatccgctt
     2581 cctcgactga tcaagctgag cctgggtcat gccgaacagc agttttccat tgttcaacgt
     2641 gaagctcgac ttgggcaaaa gcacgtcgtg cttgtcggtc ttgatttgga cattgtcacc
     2701 attgatcgcg atcacggtcc caactggagc gccgctagta tcaactacct gcatgccgac
     2761 cgactgcgca gcagccgccg aagccaaggc caaaccaagg ccaagggtcg aaaaagtacc
     2821 aagaatcagt cgcataagtc ccttcctgag ctagattggt tcatgtcata ccgattgtga
     2881 tccgaaactg aataactaat cgccggccct ttgcgctgca gcgacaatcg ggatgaaatc
     2941 cgcagccttg aggctcgctc cgccgacgag cgcaccgtcg acttctgcga tttggaatat
     3001 ctcatcggcg ttcgacgact tcactgaccc gccgtaaaga atgcgaacat ccttgccggc
     3061 gttcccatgg atttcgcgaa gcttttgccg gatcgcgcca tgcatggcgc gtatctcgtc
     3121 gctgatcggg atcttgcccg ttccaatggc ccagatcggc tcataggcaa ttgcaagttc
     3181 tccggccgtt tcgatattgg cggggagcga tccgtcgagt tgcgccatga cgaacgatac
     3241 ggcctctccg ctttcgcgaa tgtgcgccga ctcgccgaca cagaggatta cgcttaagcc
     3301 gatggcgagc gcggcttccg attttgccct gacctcggga tcgctctccc gctgcgcttc
     3361 gcggcgctcg ctatggccaa cgatcgtcag actagcgcct gcgtccaaca gcatctgcgc
     3421 agaagtgcag ccggtgtgcg cgccctttgg cgcgtggtga acatcctggc ctccgatcgc
     3481 gaagccaacc gcggctctcg ctgcccgttc gatcaatatc gccggaacgc aaagcgcgac
     3541 atcaacgccc ggatactcct ctgaggcagc ggcgattgcc ttgatctcct cgaggtcgga
     3601 ggacaggcca tgcatcttcc aattgcccgc aacgagcttc ttcaagcgca ttcttccccc
     3661 tcgccgtcga gaactgccct agcgaggcgg gttgatggac gctagtgcgg ctcgtaaagc
     3721 gctgaccatc ctccattcgc accgggaacc cgatgctttc cttcttcaga cgtgttgcaa
     3781 attccaagat cggtacatgg gtcgtcgccg ctatcgggct cgcgatcctc ggcggcttcg
     3841 cgcttgccga cctgtcaaac ttcggcactg gcaatcttgg atttggcgta ggtccaggaa
     3901 cgctcgcgaa agtcggcgac caggcggtcg atgagcgcga aatgaccgac gcgatgcagc
     3961 gcaggttgca gacggctcgg caacagcagc caacggccga ctatgccact attatcgctg
     4021 acttctatcc ggtcctcgaa gcactgattg acgacaaggc cttgattgcc ttctctgacg
     4081 cgaacggctt tccgttgtcg aagcgactga ttgatgccga gattgcgacg ataccggcga
     4141 ccaagggcta caatggccag ttcagcgaac aggcttacca ggcttttctc gcccagcaac
     4201 gcatgtcgga tgcccaagtt cgtgaaatac tcgctggcgg aatgctccag cggctcttgc
     4261 tgacgccggt ggtcacgaac ccgcgcattc cgctaggaat ggcgacgccc tacacttcca
     4321 tgctgctcga acagcgcgat ggcgaaggtg caatcgttcc tgccgatgca ttcaaaggcg
     4381 gcttgaatcc gacggacgcg cagctgcagc aattctatgc cgccaataaa tccgtccgtt
     4441 acatggtccc cgagcagcga gtcctgcgca tcgcgaaaat cggtccagac caagtgtccg
     4501 gggtagccgc gtcggaccag gaaatcgctg cttattacaa tcagcacaag gatgattacg
     4561 cgccaaaaga cacgcgctcg cttagccagg tagtcgtacc cgatcaggca agcgccgctg
     4621 ccattgccca gcgcgcaaag gctggagcaa cgcttgctgc tgccgccgct ccggcgggtc
     4681 ccaatgccgc cgtcagttcg ctcaacgacc agactcgaac ggcctatagc ggcgttgccg
     4741 gcgacaaggc ggccgatgca gtcttcgccg caaagaccgg agacgtggtt ggtcctttgc
     4801 aatcgcaatt cggctggctc gtcgtcaaag tcgattcgat caagaagggt agcggcaaga
     4861 cgctcgacga ggcgcgagcc gagatcgcgc agaaactcaa cgccgacaag cgcaagggtg
     4921 cgctcgaaga tctcgtcgac aaggtgcaga acgcactcga tcagggaagc aatttcgagg
     4981 aagcggtgag ctctgccaag cttcaggcaa gcaacacgcc gctggtgact gcgtccggcg
     5041 tttcacgcgc cgacccctcg ttcaagatga ctcccgacct cgcgccgatc ctgaaagccg
     5101 gcttcgagat tgcgccaaac gatccacctg aagttgtgac actccccgga aacgccggct
     5161 atgcggtcgt ctcgccgggc caggtcgtac ccgccgctcc cgcgccgctc gcaagcatca
     5221 aggaccaggt cacgagcgac tggatcaacc agcaggctct gcagcgtgcc ggcgcggcag
     5281 cgcagcagat cgcgggcaag gcaagcagcg gcatgtcgct tgcggaggca atcaaggcca
     5341 tcggcgcgac aataccgccg ccgcgcccga tatcagcgcg tcggatacaa atgacggatc
     5401 agcaaggaca cacgtcggct gcacttaaga tcctgtttga taccggcatt gggaaggcgc
     5461 ggatggcggc caacccgcag ggcggcggct tcttcgtcgt caaggtcgac aagatcacgc
     5521 ccggaaacgc aatttctcag cctggcctta tcagccaggt gacgagacag ctgaacgagg
     5581 cagctgccca ggattacgca cagcaattcc tggccgatat gaagcgggag atgaaggtga
     5641 agcgtaacga gagcgcgatt caagcattcc gtgcgcgact gctgagcaac gggggctgat
     5701 cccgtcgctt gacgtctcgg tgtttgttgc ctaaaagttc cccgttcgtt ctttttcgga
     5761 ggggtgattg ccaatgctca ccgtgaagca gcgggaattg ctgctcttca tcgaggatcg
     5821 cctgaaagag ggcggggtaa gtcccagctt cgatgagatg cgcgaagcgc ttgacctcaa
     5881 gtcaaagtcc ggcgtgcacc ggctgatttc cgcactggag gagcgcggct tcatacgccg
     5941 gcttcccaat agagcccgcg ctcttgaggt ggtaaagctc ccagagacgc gtccctcgac
     6001 cagtgcaatc cgaccagtcg cgcccgccgc tgcgaacgac acgatggaga taccgctcca
     6061 cgggcggata gcggccggca ctcccataga agcgcttcaa ggaaccgaaa gctttgcggt
     6121 cccggcggcg ctgcttgggc ccggcgagca ttatgcgctt gaggtcgccg gcgattcgat
     6181 ggtcgatgag ggcatactcg atggcgactt tgccctcatc cggaaagtgg ataccgcacg
     6241 cgatggagaa atcgtcgttg cgttgatcga taatgaggag gcaacgctaa agacgttccg
     6301 ccgtgaaggt cggatgatcc gcctcgatcc ggctaacagc cgctatgaac cgcaacgcta
     6361 cgaggaaggc cgcgtgcgga tacaagggcg cttggccggg ctcatccgcc gatattgagc
     6421 cgacgatctt cacggcgatg actccgcaac aaggttttaa ccccgcgttg cttgcgatgg
     6481 tagcgtccgc cggtttgcgt gcgcttgttg cggcttaagt caagagctct gcggcggccc
     6541 ctcggatgca agcgcgaacg cgccgcacag gcacattgac tggcgcttca ccgtcattcg
     6601 ataccgaaag atgacccggt agaagaggtg ctttccctat gttaggggcc ctcgctatcg
     6661 cagtgcacaa taagagaaga ggaacgcgcg tttgagcgca agtgagacgt cgcggccggt
     6721 cgtaactcga tttgcgccct cccccaccgg ctacctgcac attgggggcg cgcgaacggc
     6781 actcttcaac tggctctatg cacgtcacac tggcggcaag ttcctactga ggatcgagga
     6841 tacggatcgc gttcgctcga ccaaggaggc cattgacgca atccttgacg ggatgcgttg
     6901 gcttggcctc gattgggacg gccacgaata ttatcagtcg cagttctggg cgcgccatgc
     6961 tgagatcgcg caccggttgc tcgaacgggg agctgcgtat cgctgctaca tgacccagga
     7021 agagcttgcc gaacagcgtg agcttgccca gcgcgagcga agaccgtttc ggatcaacag
     7081 tccatggcgt gaccgacagg acgagcaaaa cgaccggccc ttcgtgatcc gcctgaaggc
     7141 accccgcgag ggtgagacga tgattgatga ccaggtccag gggcgagtca cggttcagaa
     7201 tgccgaaatt gacgatttca tcctgctgcg ctccgacggc acccccactt acatgcttgc
     7261 agttgtcgtc gacgatcacg acatgggtgt cactcacgtg atccgcggtg atgatcattt
     7321 gaacaatgca tttcggcaac tcgccatcgt gagggccatg ggttggcccg agccgacata
     7381 cgcgcacgta ccactgatcc atggcgccga tggcgcgaag ctcagcaaac gccatggggc
     7441 aatgggtgtt gatgcctatc gcgacgagct gggtctgctt cccgaagccg tgaacaatta
     7501 tctcttgcgg cttggctggg ggcacggcga ccatgaaatc atcaggcagg aacaggcaat
     7561 ccagtggttc gacctggcgc aggttggaaa gtccccgtcg cgcttcgact tcaagaagct
     7621 cgagaatctc aacggtcatt acatccgcga agcggacgac gcgcgtcttg ccgatcttgt
     7681 tgcgccaaag cttggccttt cggccaagga gaaggaattg cttgtccgcg cgatgccgga
     7741 actaaagccg cgcgcgaaca cgctcaacca gcttgccgac ggcgctcgct tcctttttgc
     7801 gaagcgcccg atcgagatgg acgaagcggc aacaatgcag cttacgtccg acgctcgatc
     7861 cgtcctttgt ggcgcatatc gtgctcttag cgcacttgcc gtttgggatg tcgcgtcgtt
     7921 agaggcg
//
LOCUS       DASRBJ010000120        10909 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_367286,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000120 DASRBJ010000000
VERSION     DASRBJ010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 10909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10909
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_367286"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..594
                     /locus_tag="VE968_03435"
     CDS             <1..594
                     /locus_tag="VE968_03435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018580 - nitronate monooxygenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HZU50908.1"
                     /translation="GITLHDVIDDRFARKAVEKGADGIIAVAAGAGGHAGRWSPFALI
                     QEIRAWFDGPLVLSGSIANGASILAAEAAGADLAYIGSPFIATTEADASEGYKQAIVE
                     SGAADIVYSDLFTGVHGNYLRSSIVKAGLDPDNLAPGSAQSMKFGSGEKGGAKAWRDI
                     WGSGQGVGVIDRVRPAAEYIDLLAAQYAAARARICTS"
     gene            complement(587..1018)
                     /locus_tag="VE968_03440"
     CDS             complement(587..1018)
                     /locus_tag="VE968_03440"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HZU50909.1"
                     /translation="MSREMPAPRSEFKAWRKLTTRWADNDAYGHVNNSVFYQWFDTAV
                     NAWLVEQAMLDIKDGDPIALVVRTSCSYFAPLVFPEDVDIGIAVSQLGRSSIRYRLGA
                     FALAEARAAAQGEFVHVTVDRSTRRPVDIPAHWRTRLLAIS"
     gene            complement(1015..2157)
                     /locus_tag="VE968_03445"
     CDS             complement(1015..2157)
                     /locus_tag="VE968_03445"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008603009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HZU50910.1"
                     /translation="MRPFTFNPGPILLAGTEQAPALAEKLPPGPCLFVTDQDLVRLGL
                     AHSYQEAIGVSHDLVLFDRVEADPSRETLLAAVELGREANVRSVVGFGGGSPMDVAKL
                     AAYLLESGDVLDEIWGVGLATGARLPLALVPTTAGTGSEATPISVITCDGGVKLAVNS
                     APLIADWAVLDATLTLGLPKNVTAATGIDAIVHAVEAYTSARLKNPLSDALAREALRL
                     LSSNLLIAVDQPANLEARSAMLLGAHLAGLAFANAPVAGVHALAYPLGGLHHLPHGLT
                     NALMLRHVLSHNLEAAREHYAELADVIDPQSARLGSQARAALLIERLDEMAGKTGLAL
                     RLRDHGVAFDEAPLLAREAMRQTRLLVNNPCPITESDAQRLYEAAW"
     gene            complement(2170..2655)
                     /locus_tag="VE968_03450"
     CDS             complement(2170..2655)
                     /locus_tag="VE968_03450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008601275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1465 family protein"
                     /protein_id="HZU50911.1"
                     /translation="MDESDMPQPQVRITSRLIDSLYTEAMLLADEARAYFDDSGRDER
                     ATLEPLARVGFACESLKVTTRIMHIVAWLLTQRAIESGEIPGRDGRRPERRLGHAQES
                     DPVVVQALPPSARKLISASADLYARVKRLEEGGLEAEVPQSPARALMGRLERGLGAQS
                     L"
     gene            complement(2756..2953)
                     /locus_tag="VE968_03455"
     CDS             complement(2756..2953)
                     /locus_tag="VE968_03455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HZU50912.1"
                     /translation="MNEVNPVGMLELLKAEHRQLDDEIQRLSSEPTGDQLELARLKRR
                     KLMLKDQIQLVVDSIVPDIIA"
     gene            3117..3281
                     /locus_tag="VE968_03460"
     CDS             3117..3281
                     /locus_tag="VE968_03460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011413069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HZU50913.1"
                     /translation="MDKAMVEELESKHAALHALIEEEEHRTHPDEDLLHRLKKEKLRL
                     KDEMAGHLTH"
     gene            complement(3372..3737)
                     /gene="dksA"
                     /locus_tag="VE968_03465"
     CDS             complement(3372..3737)
                     /gene="dksA"
                     /locus_tag="VE968_03465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013834409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019899 - enzyme binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HZU50914.1"
                     /translation="MCGKHRAYFLRKLKAWKEDIIEESRQTMAQLQVDSLREPDLADR
                     ASSETDWSIELRTRDRQRKLIAKIDCAIRRLYEGEYGYCEVTGEPISLGRLEARPIAT
                     MSLEAQERHERIERVSRDD"
     gene            4132..4899
                     /gene="surE"
                     /locus_tag="VE968_03470"
     CDS             4132..4899
                     /gene="surE"
                     /locus_tag="VE968_03470"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HZU50915.1"
                     /translation="MRILLTNDDGVNARGLKLLETVARRFSDDIWIVAPTEEQSGAGH
                     SLTLTTPVRLRRHDERRFSVTGTPTDAVMLALAHIMSDSPPDLILSGINRGANLGEDV
                     TYSGTVSAAMEGALAGVRSIALSQAYSREGMGDTVPFAAAEAWTERVLAPLIEFETEP
                     RTLINVNFPAMPPDDVKGIRVCRQGIRDYGRLRIVQRTDPRGYDYYWFGLGPMVETPG
                     HSTDLEAVADGYVSVSPLHLDLTHDRSLEALTASFAK"
     gene            complement(4920..5897)
                     /locus_tag="VE968_03475"
     CDS             complement(4920..5897)
                     /locus_tag="VE968_03475"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF025341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="retroviral-like aspartic protease family
                     protein"
                     /protein_id="HZU50916.1"
                     /translation="MLKHCLALSIALTWSGLLSAQTPTTKLDAVKGVPDIDKSSQTQD
                     VQFRTGKDDRMTVPVRLAGAGPYQFLVDTGADRTAVSRELVTQLRLPSSGGAELHSVS
                     GVSRVTTARVNDLELTRPAERAIDAAVLDRANIGADGIVGVDVLRSERVQFDFATQTM
                     SIVPSSTPDFRAEKDTIVVTARRKNGRLIVTDADVDGHRLTVVLDTGSQVSIGNSALR
                     HRLLGSSLIDPQRTVELESVTGEKIIGDYLLIPQITIGGIVLRNLAVVFTDAETFKQL
                     RLENMPSLLLGMNAIRAFKKVSIDFANRKFRVVVPEHSEIDVEVAMRGG"
     gene            6080..6724
                     /locus_tag="VE968_03480"
     CDS             6080..6724
                     /locus_tag="VE968_03480"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HZU50917.1"
                     /translation="MAKKLLETTHYSLSVAAPERPERRQDERYVSLLRVGALVIGDRR
                     ELCLIRNISAGGMMIRPYSPIASGARVSIELKHGEPVSGVAQWSEKGLVGISFDQQID
                     VLALLTPPDDGPRPRMPRIDLSCSASLRCDGDVSRVRVVNISQGGICISSDSNLEINA
                     NVVVSLPGLHAAAGVVKWREGDCYGIGFNRVYPVHELMGFLKEQQREQNDRQVA"
     gene            complement(6721..7365)
                     /locus_tag="VE968_03485"
     CDS             complement(6721..7365)
                     /locus_tag="VE968_03485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF938 domain-containing protein"
                     /protein_id="HZU50918.1"
                     /translation="MPGERRFYEQLCGDARRSAPAALRNRMPIAEVLGEWLPKAGLVL
                     EIASGTGEHVIFFANRFPGLSWQPTDMDRGALASINGWRKASALPNILDPLALDAGSD
                     EWPIEAADAVLSINMVHIAPWKSALGLLNGSARVLKRGGPLIVYGPWLERGKPVAASN
                     LEFDRQLKSRDAQWGLRTLEDFEAEAVKRYFVLEQVRPMPANNLMLLFRFGGGD"
     gene            complement(7365..7883)
                     /locus_tag="VE968_03490"
     CDS             complement(7365..7883)
                     /locus_tag="VE968_03490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CcdC protein domain-containing protein"
                     /protein_id="HZU50919.1"
                     /translation="MHGQVHPVQPGWVSYAITIGLLVIVMALRLRRMGKMRPLNLGRL
                     WIVPALYAAIAAAMFIASPFSVPIAIASIAGLIVGATLGWMRGKMMHIEVDPETHALN
                     QKASPAALFFLVALMIVRGGARSVLGQSGSVSPAMLTDPLIAFALGLLALTRVEMYLR
                     AKRLLGEARGRA"
     gene            complement(7902..9476)
                     /gene="gcvPB"
                     /locus_tag="VE968_03495"
                     /pseudo
     CDS             complement(7902..9476)
                     /gene="gcvPB"
                     /locus_tag="VE968_03495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040938.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPB"
     gene            complement(9467..10825)
                     /gene="gcvPA"
                     /locus_tag="VE968_03500"
     CDS             complement(9467..10825)
                     /gene="gcvPA"
                     /locus_tag="VE968_03500"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010185477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPA"
                     /protein_id="HZU50920.1"
                     /translation="MRYLPLSDGDRGEMLRVIGAKSIDELFRDVPEEVRLSGPIAALP
                     MHASEMAVERHMTERSRKNMVASDVPFFLGCGAYKHHIPASVDHIIQRGEFLTSYTPY
                     QPEIAQGTLQMLFEFQTQVARLFGCEVANASMYDGSTAMWEAIVMAHRITRRNKTIIS
                     SGVHPHYVKVAQTMAKFTEDELVTSLPQLDGATDLERLARTIDSDTSAIVVQYPDILG
                     RVSDLTTIAEAAHAAGALLVAVVTEPVALGLIRSPGEMGADIVVGEGQSLGVGLQFGG
                     PYVGLFACRDRHVRQMPGRLAGETVDAEGKRGFVLTLSTREQHIRREKATSNICTSSV
                     LCALAFTVHLTLLGGKGLRDLASLNHARACEVADRLSAIAGVEIVNSAFFNEFTVKLP
                     VEARPAVHSMVERSVLGGVSLGRLYPGNEDLKNGLVIAVTETVTDDDIRALENAIKEI
                     CA"
BASE COUNT         2192 a         3330 c         3268 g         2119 t
ORIGIN      
        1 ggcatcacgc tccacgacgt catcgacgac cggtttgcgc gcaaggcggt cgagaaaggc
       61 gcagacggga tcatcgcggt cgccgccggc gcgggcggcc acgccggacg ctggtcgcca
      121 ttcgccctca tacaggaaat acgcgcttgg tttgacgggc cactggttct ttccggttcg
      181 attgccaacg gcgcgtcgat cctcgcggcc gaggccgcgg gcgcggacct cgcttacatc
      241 ggctcgcctt ttatcgccac gacggaggcg gatgcttccg agggttacaa gcaggcaatc
      301 gtcgagagcg gggcggccga tatcgtttac tcggacctgt tcaccggcgt tcacggcaat
      361 taccttcgtt catcgatcgt gaaggcaggg ctcgacccgg acaatcttgc tccgggcagc
      421 gcccaatcga tgaagttcgg ttcgggtgaa aagggtggcg caaaggcgtg gcgtgatatt
      481 tggggctccg gccaaggtgt cggagtaatc gatcgcgttc gaccggccgc cgaatatatt
      541 gacctgctcg cggcgcaata tgccgcggca cgggcgcgta tctgcactag ctgatcgcga
      601 gcagcctcgt tcgccagtgt gcggggatgt cgactggtcg gcgggtggag cggtcgaccg
      661 tcacatgaac gaactcaccc tgggccgccg cgcgcgcttc ggcgagagcg aacgctccaa
      721 ggcggtaacg gatgctcgat cgtccaagtt gcgaaaccgc gatgccgatg tccacgtcct
      781 ccggaaagac gagcggtgca aaatacgaac aggaggtgcg taccaccaga gcgatgggat
      841 cgccgtcttt aatatcgagc attgcctgct cgacgagcca cgcgttcacg gctgtatcga
      901 accattggta gaagacgctg ttattaacat ggccataggc gtcattgtct gcccatcggg
      961 tggtgagctt gcgccaggct ttgaactccg agcgcggcgc gggcatctcg cggctcacca
     1021 ggctgcctca tagagtcttt gcgcatcgct ttccgtgatc gggcagggat tgttaacgag
     1081 cagcctcgtt tgccgcatcg cttccctcgc gaggagtggc gcttcatcga aggcaacgcc
     1141 gtgatcgcgc agccgaagtg caagaccagt cttgcccgcc atctcgtcga gccgttcaat
     1201 gagaagtgcg gcgcgtgcct ggctcccaag gcgcgctgat tgaggatcga tcacgtcggc
     1261 aagctcggca taatgctcgc gcgccgcttc gagattgtgc gagagcacgt gccgcagcat
     1321 cagcgcgttg gtgaggccgt ggggcaagtg atgcaatccg ccgagtggat aagcgagcgc
     1381 atggacgccg gcgactggcg cgttcgcaaa tgcgaggccg gcaaggtgcg ctccaagaag
     1441 catcgccgag cgtgcttcga gatttgcggg ctggtcgact gcaatgagga gattggaact
     1501 gagcagccgg agcgcctctc gggcgagtgc atcggacaag gggttcttca ggcgtgccga
     1561 cgtataagcc tcaactgcgt ggacaatcgc gtcaatgccg gttgccgcag tcacattctt
     1621 gggcaggcca agcgtcaagg tcgcatcgag taccgcccag tcggcgatta gcggcgctga
     1681 attgaccgcg agtttgacgc cgccgtcaca agtgatcacg gaaattggcg tcgcttccga
     1741 accagtgccg gcggtcgttg gaacgagcgc gagcggcagg cgcgctccgg tcgcgagccc
     1801 taccccccag atttcatcga gaacgtcgcc ggattccaga aggtaggccg cgagcttggc
     1861 aacatccatc ggacttccgc cgccgaagcc aacaaccgag cggacgttgg cttcacgccc
     1921 aagctcaacg gcagcaagga gtgtttctct cgatggatcc gcctcgaccc gatcaaagag
     1981 cacgagatca tggctgactc cgatcgcttc ttgatacgaa tgggcgaggc caagtcttac
     2041 gagatcctgg tctgtaacga acaggcatgg accaggtgga agcttctcgg ctagcgccgg
     2101 cgcctgctct gttcccgcca gcagtatcgg acccgggttg aatgtaaacg gccgcatcgg
     2161 ccgttcctgt taaaggctct gagcgccaag tccacgctcg aggcggccca tcagggcgcg
     2221 cgcggggctt tgcgggactt cagcttcaag accgccttcc tcgaggcgct taacgcgggc
     2281 gtagaggtcg gcacttgcgc tgatcagctt gcgggccgag ggtggaagcg cctggacgac
     2341 aaccgggtcg ctctcttggg catgaccaag acgccgctca gggcggcgac catcgcgacc
     2401 cggtatttct cccgactcga tcgctctttg ggtgagcagc cacgccacga tgtgcatgat
     2461 tcgagtcgtg accttgagcg actcgcaagc aaaaccgaca cgtgccaatg gttcgagagt
     2521 cgctcgttcg tcgcgtcccg aatcgtcgaa ataggcgcgc gcctcgtcgg caagcagcat
     2581 cgcctcggtg taaagcgagt cgatcagccg agacgtaatc cgcacttgtg gttgcggcat
     2641 gtctgattcg tccatcgtta cgacactgcc actgctcgtc gccggaggaa acgcccgact
     2701 cgacttggcg ctgctgccgc cccaatcatg tctcctcctg ggacatgggc cgtgctcatg
     2761 caatgatgtc cggaacgatc gaatcaacaa cgagctgaat ctggtccttc agcatcagtt
     2821 tgcgcctttt caaccgcgca agttcgagct gatcgccggt gggctcggag gaaaggcgct
     2881 gaatctcgtc gtccaactga cggtgctcgg ccttgagcag ttccaacatg ccaaccgggt
     2941 tgacctcgtt catgctgccc tccttgtacc ccatcgggat gccaaccgga acctcgcctt
     3001 cgggttcaag acaagcagcg tgatcacacg gctgagccgt tagaacgctc aagacattga
     3061 cgacgattcg tggtttatta cgtactggtg acactagact gaaaggaact gcaccaatgg
     3121 acaaggcaat ggtggaggag ctcgaatcga agcatgccgc gcttcacgct ctcatcgaag
     3181 aggaagagca tcgaacccat cccgacgaag accttctcca ccgtctgaag aaagaaaagc
     3241 tgagacttaa ggacgaaatg gcaggccacc tcacgcacta gaggcggcct tttttgtttc
     3301 ggcgcggcga tttggaacgc gacagcttcc ttagctgacg atcattccag cagcgccgcg
     3361 cacattattt cctagtcgtc gcgcgaaacc cgctcgatgc gctcgtgacg ctcctgcgcc
     3421 tcgagagaca tggtggcgat cggccgagct tcgaggcggc caagcgagat cggctcgcca
     3481 gtcacctcgc aatagccata ttcaccctca tagagccgac ggatagcaca atcgatcttg
     3541 gcaatgagct tacgctgccg atcgcgggtg cgaagctcga tcgaccagtc ggtctcgctc
     3601 gatgcccgat cggcaaggtc gggttcgcgc agcgaatcga cctggagctg cgccatggtc
     3661 tggcgagact cctcgataat atcttccttc caagccttga gtttcctcag aaaataggcc
     3721 cggtgcttgc cgcacatgaa ctcttcatct tccgaggggc ggtaaccctc agcaagaatg
     3781 attctgtcga aaggttcgaa atcactgccg ccgtaaaggt cgactaaggc cgtcgccatt
     3841 caactccctc cccgcacttg ctcgcgattc ccaatcgcga gcgccccaac gcgccgccag
     3901 gctgcggccg ggcccaccgg tgcagccgga ggcaattaaa gctgacttta ccgggactta
     3961 tccggcaaaa atcggctatc cccaaggcgg cctatagtta cccggcctac tgttaacaag
     4021 cactgacaca gaagtagtga agaaatcgac aagctgttgc gaatatggcg caattctggc
     4081 gttcgcgcct gcgcagttgc agccgatcaa cgcctcccgc atagacgcct gatgcgcatc
     4141 ctcctcacca atgatgacgg cgtgaacgcg cgcgggctaa agctcctcga aacggtcgcc
     4201 cgtcggttta gcgacgacat ctggatcgtc gctccgacgg aggaacagtc tggtgccggc
     4261 cactcgctca cgcttacgac tcccgtgcgc ctgcgccgcc atgatgagcg ccgtttctcg
     4321 gttacgggga cccccaccga cgcggtgatg cttgcgcttg cccacatcat gagcgattca
     4381 ccccctgacc ttattctctc agggatcaat cgcggcgcca atcttggcga agatgttacc
     4441 tattcgggga ctgtgtcagc ggcgatggaa ggtgccttag ccggcgtacg ctcgatcgca
     4501 ttgagccagg cttattcacg cgagggcatg ggcgacaccg tccccttcgc ggccgccgag
     4561 gcctggaccg agcgcgtgct cgcgccgctc atcgaattcg agaccgaacc gagaaccctc
     4621 atcaacgtca atttcccggc aatgccgccg gacgatgtta agggcatcag agtgtgtcgt
     4681 cagggcatac gagactatgg tcgactgcgg atcgtgcaaa gaacagatcc gcgcggctat
     4741 gattattact ggttcggact tggtccgatg gttgaaaccc cgggccactc gacggatctc
     4801 gaggccgttg ccgacggcta cgtttccgtc agcccactgc acctcgacct tacccacgac
     4861 cggtcgcttg aggcgctaac agcgagcttc gccaaatagg ccgaatccag ccgcaataat
     4921 cagccgccgc gcatcgcaac ctcgacatca atctcgctgt gctcgggaac gaccacacga
     4981 aacttccggt tggcaaaatc aatcgagact ttcttgaacg cacggatcgc gttcattcca
     5041 agcagcagcg acggcatgtt ctcgagccgc agctgcttga acgtctcggc gtcggtgaaa
     5101 accaccgcga ggtttcgcaa gactattccg ccgatcgtga tttgaggaat gaggagataa
     5161 tcaccaatga tcttttcgcc ggtcacggat tcgagttcga cggttcgttg cgggtcaatc
     5221 aggctcgatc cgagtagacg gtggcgcagc gccgagttgc cgatgctcac ctgtgatcca
     5281 gtgtccagaa cgaccgtcag cctatgcccg tcgacgtcgg catcggtgac gatcaatcga
     5341 ccattcttgc gcctcgccgt gacgacaatg gtgtccttct cggcgcgaaa atccggcgtc
     5401 gacgaaggga cgattgacat ggtctgcgtt gcaaaatcaa actgcacccg ctcagatcgc
     5461 aaaacgtcca caccgacgat gccgtcggca ccaatattgg ctcgatcaag gacagcggcg
     5521 tcgattgctc gttcggcggg ccgcgtcagt tcaagatcat tcacacgcgc cgtcgtaacc
     5581 ctcgagactc cagacacgct gtggagttca gcgccgccgc tgctcggcag gcgcaattgc
     5641 gtcaccagct cgcgcgagac ggccgtccga tcggcgcctg tgtcgaccag gaattggtag
     5701 ggtccagccc cggcaagccg gactggcacg gtcattcgat cgtccttacc ggtcctaaac
     5761 tggacgtctt gcgtctgcga agacttgtcg atgtcgggaa cgcctttgac ggcgtcgagc
     5821 ttggtggtcg gtgtctgagc cgaaagcagg ccactccacg tcagcgcaat agagagcgcc
     5881 aggcaatgct tgagcataag gtcgtctccg ctccagcttc tacgcctcac gaccccgaac
     5941 ggcaaacaac cgaaacggcg caaatgaaag ggtctggtaa gccttgtcgc ctaaagtcct
     6001 tggccaagtg ggggccggtt cgacgaaagt cgggtcggat gagcaacgca agttgcgtct
     6061 ttcgattcgg agcctgcatt tggccaagaa gctattagag accactcact actcgctttc
     6121 cgttgcagcg cccgagcggc cggagcggcg acaggacgaa cggtacgtca gtctcctgcg
     6181 ggtcggtgca ttggtgattg gcgaccggcg cgagctttgc ctaatccgca acatctcggc
     6241 cggtggcatg atgatccggc cttattcgcc gatcgccagc ggcgctcgcg tgtcgattga
     6301 actcaagcat ggcgaacccg tgagcggtgt cgcgcaatgg tcggagaagg gccttgtcgg
     6361 catttcattc gatcaacaga tcgacgttct cgcgcttcta acgccgcccg acgacgggcc
     6421 gcgccctcga atgccgcgca tcgatcttag ctgctccgct tcgctgaggt gcgacggcga
     6481 tgtctcgcgc gtccgcgtcg tgaacatctc gcagggtgga atttgcatca gcagcgactc
     6541 caatctcgag atcaacgcga atgtcgttgt cagtcttcca ggtctgcatg ccgctgcggg
     6601 cgtcgtcaaa tggcgcgaag gcgattgcta cgggattggc ttcaaccggg tctatcccgt
     6661 gcatgaactc atgggatttc tcaaagagca gcaacgcgaa cagaacgatc gtcaggtcgc
     6721 ctagtctcct cctccaaagc gaaatagcag catgaggttg ttcgccggca tcggacggac
     6781 ctgctcaaga acaaagtacc gcttcaccgc ttcggcttcg aaatcttcga gcgtccgcaa
     6841 gccccactgt gcgtcgcgcg acttcagctg acggtcaaat tcgagattac tggcagcaac
     6901 gggcttaccc cgctccagcc atgggccgta aacgatcagc ggcccgccac gcttcagtac
     6961 ccgcgctgag ccgttcaaca gccccagtgc cgacttccat ggcgcaatgt ggaccatgtt
     7021 gatgctgaga acggcatccg ccgcctcgat cggccactca tccgaacccg catcaagcgc
     7081 cagcggatcc aatatgttgg gcagcgccga tgctttgcgc cacccattga tcgacgccag
     7141 agcccctcga tccatgtccg tgggctgcca ggagagcccg ggaaatcgat tcgcaaagaa
     7201 gatcacatgt tcaccggtgc cgctcgcaat ctcgaggacg agcccggctt tcggcagcca
     7261 ctcgccgagg acctcggcaa ttggcatccg gttgcgtaat gccgcgggcg cggagcgccg
     7321 cgcgtcgccg cagagttgct cgtaaaaccg ccgctcgccg ggcatcacgc ccgtccgcgc
     7381 gcctcaccga gcagccgttt ggcgcgaagg tacatctcga ccctggttag tgctaggagg
     7441 ccaagcgcga aggcgatcag tggatcggtc aacatcgctg ggctgacgct gccgctctgg
     7501 ccaagcacac ttcgcgcacc gccacgaacg atcatcagtg cgacaaggaa gaacagcgcc
     7561 gcgggagacg ctttctggtt aagcgcgtgc gtttcgggat cgacctcgat gtgcatcatt
     7621 tttccgcgca tccagccgag cgtcgcgccg acaatcagtc cggcaatcga ggctattgcg
     7681 atgggaacgg aaaagggcga ggcaatgaac atcgctgctg cgatcgctgc gtagagtgcg
     7741 gggacaatcc acaatcgacc aaggttgagt gggcgcatct tgcccatgcg ccgcaaacgg
     7801 agcgccatga cgatgaccaa caggccaata gtgatcgcgt aactaaccca ccccggctga
     7861 accggatgaa cttgcccatg cacgccctat cctcccctga tttactccgc cgcctccgcg
     7921 gccggcgcat cgcgccacac aagcaccggc tttcgagccg ccaatgtctc gtcgaggcgg
     7981 cgccggggcg aataaaccgg agctgccttc aggctcttgt ctccagctcg cgcgcgttcc
     8041 gcaatcgaac gcacggctgc aatgaactcg tcgagactgg ctttcgactc ggtttcggtc
     8101 ggctcgacga gcatcgctcc atgcaccacc agcggaaagt acatggtcat cggatgaaag
     8161 ccttcgtcaa tcaacgcctt tgcaagatcg agcgtattga tgtcgccttc aaaacctttg
     8221 tcggaaaaaa tcgcctcgtg catgcagggg ccgctcgccg cgaaaggcgc gtcgagcaca
     8281 tcctcgaggc tgcgcaagag ttagtttgca ttcagcaccg cgtcttcggc gacttgcttc
     8341 aagccatcgg cgccatggct gagaatataa gcaagtgctc gcgtgaacat ccccatctgc
     8401 ccgtgaaacg cgaccattcg gccgaacgca tgaggatgat cctcaccggc attttcttct
     8461 tcaacgagct tgaacgttcc gtcgggcatt cgcgcaacaa acggcagcgg tccataaggc
     8521 gcgagtgctt ccgaaagcac gaccggaccg gaacccggtc cgccgccgcc gtgcggcgtt
     8581 gaaaatgtct tgtggaggtt gatgtgcatt gcatcgacgc caagatcacc cgggcgtact
     8641 ttcccgacga tggcgttgaa gttggccccg tcgcaataaa cgaaggcgcc agctgaatga
     8701 acggcatcgc tgatcgcctt gaggtccggt tcgaagagac cacaggtatt ggggttggtg
     8761 atcatcaccg cggcgacatc cggacctagt ctcgcggtaa gagcggcaag gtcgacgcgc
     8821 cctgcttcgt tggccgggat gttttcgaca cggtagccag cgaaagcggc ggttgcaggg
     8881 ttcgttccat gggcgctttc aggaacgaga acgacttcgc gcttgtcgcc gcgcgcttcg
     8941 agtgcagctc ggatgcataa cagcccgcag agttcgccgt gagcgcctgc cttggggctc
     9001 attgcaacgg cgtgcattcc ggttagatca agcaaccacc aggcgagctc gttgatgagc
     9061 tcgagcgcgc cctggacggt ctcctgcggc tgaagcgggt gcacgtcggc gaagccgggc
     9121 agccgagcga ctttctcatt caaccgtgga ttatgcttca tcgtgcacga gccaagcggg
     9181 aaaagcccga gatcaatcgc gtaattctgg cgcgataggc gggtgtaatg acggaccgtt
     9241 tcgggttcac tcagtcctgg aaggccgatt tcgcggttgc gttccaaacc cgcgagccgc
     9301 tcatgcgcca ttgggattgt cgcgagatcg acgccagtct cgtcgttgcg cccacgctcg
     9361 aagatcagcg gctcttcaag catcagcgcg cgattacccg tgatggttcg agcctccccc
     9421 tcttcgttcg cgggagctga ggggcgccag ccagaaggat tgaaggtcac gcgcatatct
     9481 ccttgatcgc gttttcgagc gcgcggatgt cgtcgtcggt caccgtttcc gtgacggcga
     9541 tgacgaggcc gttcttgagg tcttcgttcc ccggatagag ccgacctaaa gagacgccgc
     9601 cgaggaccga ccgttcgacc attgagtgaa cggctggcct tgcttcaacg gggagcttga
     9661 cggtgaactc attgaagaac gcgctattga ctatctcaac accggcaatt gccgaaaggc
     9721 ggtcggcgac ttcgcacgca cgggcgtggt tcaaggacgc gagatcgcgc aatccttttc
     9781 cccccaggag cgtcaggtga acggtgaagg caagcgcgca caggaccgaa ctcgtacata
     9841 tgttcgaggt cgctttttcg cggcggatgt gctgctcgcg cgtcgagagt gtcaagacga
     9901 agccgcgttt gccctcggcg tcgacggttt cgccggcaag gcgtcctggc atttgccgga
     9961 catggcggtc gcggcacgca aaaaggccca cgtacggacc accaaactgc agcccgacgc
    10021 caaggctctg accttcgcca acgacgatgt cggcgcccat ttcacccggc gaccggatca
    10081 gaccaagggc caccggctcg gttacgaccg cgacaagaag cgcgccagcc gcgtgcgcag
    10141 cttccgcgat cgtcgtgaga tcgctcactc ggccaagaat gtcgggatat tgaacgacga
    10201 ttgcgctcgt atcggaatcg atcgtccgcg ccagtctttc gaggtcggtt gctccgtcca
    10261 gctgagggag cgaggttacg agttcgtcct ccgtgaattt ggccatggtt tgcgcgacct
    10321 tcacgtaatg ggggtgaacg cccgaagaaa taatggtctt gttccgccgc gtgatgcgat
    10381 gggccatgac gattgcttcc cacatggctg ttgagccgtc gtacatggac gcgttcgcga
    10441 cttcgcagcc gaacagtcgc gccacctgcg tttgaaactc gaacagcatc tggagcgtgc
    10501 cctgcgcgat ctccggctga tagggcgtgt agctggtgag aaactcgccg cgctggatga
    10561 tatggtcgac gctcgcggga atgtgatgct tgtaggctcc gcacccaagg aagaaaggca
    10621 cgtcggacgc gaccatgttc ttgcgcgaac gctcggtcat gtgccgttcg acggccattt
    10681 ccgaggcatg catgggcagt gcggcgattg ggccgctcag ccgcacttcc tcgggaacat
    10741 ctcgaaacag ttcgtcaatt gatttcgcgc cgatgacgcg cagcatttcg ccgcgatcgc
    10801 cgtcactcag tggcagatag cgcatcagtt agggctttct catgataaaa cggagccgga
    10861 cataatcggc gatgtttgag ccgacccgat ccgcaacggc ggcagctat
//
LOCUS       DASRBJ010000121         3321 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_572943,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000121 DASRBJ010000000
VERSION     DASRBJ010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3321
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_572943"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..472
                     /locus_tag="VE968_03505"
     CDS             <1..472
                     /locus_tag="VE968_03505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HZU50921.1"
                     /translation="GSLATGAASIANLFTGGALGLIAGPLLSWSFPNQETARARIASS
                     EAQSRAELAKFDKTVLTALEETETALSRYGNEIRRRQALNSARAQAERAARITRAQLR
                     EGRADSLAVLDAERTLAQAESDLAASDTRLVDDQVDLFRALGGGWQKQGEDPNG"
     gene            465..641
                     /locus_tag="VE968_03510"
     CDS             465..641
                     /locus_tag="VE968_03510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50922.1"
                     /translation="MAEGSHNLTSRRGHANESVWHLLPRSSQAATALHLLLLMSAVSL
                     LTFGALIVLYKLFI"
     gene            792..1577
                     /locus_tag="VE968_03515"
     CDS             792..1577
                     /locus_tag="VE968_03515"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HZU50923.1"
                     /translation="MSCTALLQGPALASNIPLEPTKPWDLDYGATQCTAMREYNSADG
                     PITLAIIPAPNDENYELVVTYKRHPPVFAEEYAGSVIFASRPISGWALKYGVGNLTLY
                     QFRVTSSAMDQALNAPTLTLRANGEIDLSFALDNMKALVDGLRKCTADLRDYWNFDGE
                     KNGRIAVSSKGDIRSDFSASDYPREALRRMQDGSAQYLLLIDERGYVMGCHVLKPSGV
                     PALDAMGCLVIQERSKLTPAKDPNGKPVRSALETPPVVWRIER"
     gene            1804..2358
                     /locus_tag="VE968_03520"
     CDS             1804..2358
                     /locus_tag="VE968_03520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1993 domain-containing protein"
                     /protein_id="HZU50924.1"
                     /translation="MRIAAVNCEKGETMSFGMWEASVPVFVSSLTNMRDWLAKAAEEK
                     DEATLLDARLAPDMRPLPAQYQMASDSAKNALARLTGAEAPSMPDTEKSFAELRERCD
                     RTISYIESFGRDALAGSDERDVVVKFPNGMGYRFSGAQYLAGFALPNFFFHVTTAYAI
                     FRNAGVSVGKADFLRHLGAPETIG"
     gene            2491..2823
                     /locus_tag="VE968_03525"
     CDS             2491..2823
                     /locus_tag="VE968_03525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011906703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HZU50925.1"
                     /translation="MAVRGSCHCGKVRIDLPSMPAWVADCNCSLCRRLAWRVAYFPPE
                     QVRISGETKAYVWGDRMIGIHHCPVCGCGTHWQSLGEDFGKMGINARLLDGFNENEVE
                     VRKIDNAG"
     gene            complement(2897..>3321)
                     /locus_tag="VE968_03530"
     CDS             complement(2897..>3321)
                     /locus_tag="VE968_03530"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HZU50926.1"
                     /translation="GDEIGNHSFHHRRMLFHSAHYYDEEIRSTDAAIVAAGGPKPTLF
                     RPPYGKKLIGLPLAVERSGKRMIMWDAGDPPDRDARSYARKVIREVRPGSIILIHAMY
                     STDATERAALPMIVDDLAKQGYKMVTVSELIASDAGHS"
BASE COUNT          673 a          954 c         1016 g          678 t
ORIGIN      
        1 tgggtcgctc gcaacaggcg cggcgagcat tgccaacctc ttcaccggcg gtgcgctggg
       61 gctgattgcc ggtccattgc tcagctggtc cttcccaaac caggagacgg cccgtgcaag
      121 gattgcgagc tcggaggcgc agagccgagc cgagctcgcg aagttcgaca agacggtgct
      181 aaccgctctt gaggagaccg agactgcgct ctcgcgctac gggaacgaga ttcggcgaag
      241 gcaggcactg aactcggcgc gcgcgcaggc cgagcgcgcc gcgcgcataa cgcgtgcaca
      301 acttcgcgaa ggccgcgccg acagccttgc cgtgctcgat gccgagcgga cgctcgcgca
      361 ggccgagagc gatcttgctg cttccgatac gcggttggtc gacgaccagg tcgacctgtt
      421 ccgagcacta ggtgggggtt ggcagaaaca aggagaagat ccgaatggct gaaggttcgc
      481 acaatctaac atcacggcgc gggcatgcga atgaatcggt ttggcacctt ctcccaagga
      541 gtagccaggc ggccaccgcg cttcacttgc ttctcctgat gtccgccgtt tcgcttctga
      601 cgttcggcgc gctcatagtc ctctacaagc tctttatctg atgcgcgcag aggaccacga
      661 gaaagccccg gtgcttagcg cgcgttattg aaccgattga agacctctcc ctctctgcta
      721 cgcttggcgt cgggggagta tcgatgcggt tgcgtgatcg gaaatggcgg ggtttctggc
      781 tgaactcatt ggtgtcatgc acggctctgc ttcaggggcc ggcgcttgcg agcaatatcc
      841 cacttgaacc gacaaagccg tgggacctcg actatggcgc aacgcagtgc accgccatgc
      901 gcgaatataa ttcggcggac ggcccgataa cgctcgcgat aatccccgca ccaaatgacg
      961 agaactacga gttggtcgtc acctacaagc gacatccgcc cgtctttgcg gaagaatatg
     1021 ccggctcggt catatttgct tcgcgtccaa tcagcggatg ggcgctcaaa tatggtgttg
     1081 gcaacctcac gctctatcaa ttccgagtca cgtcgtcggc aatggatcag gcacttaacg
     1141 ctcccaccct caccttgcgt gcgaatggcg agatcgattt gagcttcgcc ctcgacaaca
     1201 tgaaggcgct tgtcgacgga ctgcgaaaat gcaccgcgga cttgcgcgat tattggaact
     1261 tcgacggcga aaagaatgga cgtatcgcgg tgtcgtcgaa aggcgatatt cgctcggatt
     1321 tttcggcaag cgactatccg cgggaggctc tccgccggat gcaggatggc agcgcgcaat
     1381 atctgctcct catcgacgag cgaggctatg tgatgggctg ccatgtcctg aagccgagcg
     1441 gagttcccgc gctcgacgcc atgggatgtc tggtgatcca ggaacgatcg aaattgacac
     1501 ccgccaagga tccgaacggt aaacccgttc gaagcgcact cgaaaccccg ccggtcgttt
     1561 ggcgaattga gcgctgacgt cgggcttgtc gctcgttgga gcgcgccgag ctcgccaaac
     1621 ggatcagcgc ggaagttccg ggctttgctc acgcgattta tcgcttttcg gcaggcccag
     1681 agtcggtgcc aatccgccaa gcaaggcgga tcgcgagcga acgactaata ggacgaagtt
     1741 tgtagaaggt tgatgaagcc ggcgatattc gggcgaccat tgcgcagcct ctcctgagga
     1801 gccatgcgca tcgccgcagt caattgcgaa aagggtgaaa ccatgagttt tggaatgtgg
     1861 gaagcgtcag tcccggtatt tgtcagctca ctaacaaaca tgcgcgattg gctcgcgaag
     1921 gctgctgagg aaaaagacga agcaacgcta ctcgacgcgc ggcttgcgcc ggatatgagg
     1981 ccattgccgg cgcagtatca aatggcatcg gattccgcga aaaatgcgct cgctcggctc
     2041 acgggtgccg aagctccgtc catgccggac acggagaaaa gcttcgctga gcttcgggag
     2101 cgatgtgatc gaacgatctc ttatattgag agctttggcc gtgacgctct cgccggcagt
     2161 gacgagcgcg atgtggtcgt caagtttccc aatggcatgg gctaccgatt ctcgggcgcg
     2221 caatatctcg ccggcttcgc ccttcccaat ttcttcttcc acgtgacgac ggcttacgcg
     2281 atcttccgga acgccggtgt gtcagtaggg aaagccgact tcctgcgcca tctcggagcg
     2341 ccggaaacga tcggctgatg tgcgtggacg tcgttcggcc cgtccgacac acgcgatcga
     2401 aacacagccg cgctcgtcct gggagcgctt ttccagaatg cgtcaaaccg agccattgcg
     2461 gttggtcgct accggcgatt agaagtcgcc atggccgtcc ggggaagctg tcactgcggc
     2521 aaagtgagga tcgacctgcc gagcatgccg gcgtgggttg cggactgtaa ttgttcgctc
     2581 tgtcgccgcc ttgcctggcg ggtcgcttac tttccaccgg aacaggttcg tatttccggt
     2641 gagacgaagg cttatgtctg gggcgatcga atgatcggca ttcatcattg cccggtctgc
     2701 ggttgcggca ctcactggca gtcgcttggc gaagacttcg gcaaaatggg tatcaatgcc
     2761 cgcctgctgg acggtttcaa tgaaaacgag gtcgaggttc ggaagatcga caacgccggg
     2821 tgattagcgt cgactgggct tgctcgcgaa cagaatttcg cgcgccaagg gtggcacggc
     2881 aacgccgaaa tgatcgtcac gagtggcccg catctgacgc gatgagttcg cttaccgtca
     2941 ccattttata accctgcttt gcaagatcat cgacgatcat cggtaatgcc gcgcgttcgg
     3001 ttgcatcggt cgaatacatt gcgtgaatga gaatgatcga tcctggccga acctcgcgga
     3061 tgaccttccg tgcataggag cgcgcgtcac ggtcgggcgg atcgcccgca tcccacatga
     3121 tcatccgctt gccactgcgt tcgaccgcga gcggcaagcc gatgagcttc tttccgtaag
     3181 gcggccgaaa gagagtgggc tttggcccac ccgcggcaac aattgccgcg tccgtgctgc
     3241 ggatctcttc gtcgtagtaa tgagccgaat ggaataacat ccggcggtga tgaaagctgt
     3301 ggtttccaat ctcgtcgccg g
//
LOCUS       DASRBJ010000122         3535 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_367330,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000122 DASRBJ010000000
VERSION     DASRBJ010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3535
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_367330"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..1417
                     /locus_tag="VE968_03535"
     CDS             137..1417
                     /locus_tag="VE968_03535"
                     /EC_number="3.4.13.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013832190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070573 - metallodipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HZU50927.1"
                     /translation="MKAKAALLVAVLFMSTSAAAQPTDRKVQERIDRILKATPLIDGH
                     NDIAEELRENYGLKVEGLASGTDKWKPKPLMTDMARLRDGRIGAQFWSVYVPSEVTGD
                     AAIRATLEEIDTVKRMVRAYPNDLELAGSADDIVRIHKAGRVASLIGVEGGHQIGGSL
                     AALRQFYDLGARYMTLTHFKNNEFADSATDDPKYHGINEFGRAVIYEMNRIGMLVDLS
                     HVSPETMRAALKMTRAPVLFTHSDARALSDHPRNVPDDVLKLVAANGGVVMVNFYMGH
                     LSSAYAEWSAEKSAEEARLESLYSGQPDRRAAAMSEWLGSHPAPHADVGLIADHIEHV
                     ATTAGYDHVGIGGDLDGIGFDEAPAGMNSVSSYPLLFAELIRRGWSDENLSKLAGGNV
                     LRVMREAEAVAASMKNQPPSMERLRPWSKDDPWK"
     gene            1414..2088
                     /locus_tag="VE968_03540"
     CDS             1414..2088
                     /locus_tag="VE968_03540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HZU50928.1"
                     /translation="MSTTEPPLRAAIIPVTPLQQNCTLLWCTATMAGAFVDPGGDLPR
                     LKAAAAKAQVRIDKILLTHGHIDHCGSAGLLAQELGVPVEGPHEDDRYWIDRLAQDGS
                     KYGIPGAPFEPSRWLDDNDQVRVGELIFNVRHCPGHTPGHVVFHHPESKLAFVGDVLF
                     RGAVGRWDFPHGNQEQLIRSITRCLWPMGDETAFVPGHGPMSTFGHERQTNPFVADAI
                     VGARDG"
     gene            2081..2968
                     /locus_tag="VE968_03545"
     CDS             2081..2968
                     /locus_tag="VE968_03545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HZU50929.1"
                     /translation="MADLFAGVELGGTKCILLLARGPDEIIERVQLDTGDPDDTLSSI
                     EHILARWQSATRFEALGIGSFGPLNLDPASPRYGEVTNSPKLRWRGARVLSRLSAAAG
                     VPARIDTDVNGAALAEIRWGSGRGYEDFAYITVGTGVGVGLIVNGQPTRGFSHCELGH
                     IRTARLPGDEWKGSCPFHGDCVEGLASGPALKARLGSELALQLDRGHPVWKSVSWALA
                     QLCHTIVCAAAPRAIAIGGGVVEGNPHLIQEVQEMLVESLAGYVEIPASRQPYVGAPV
                     LGSGAGPLGAIALAMTARD"
     gene            complement(2958..>3535)
                     /locus_tag="VE968_03550"
     CDS             complement(2958..>3535)
                     /locus_tag="VE968_03550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010413210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50930.1"
                     /translation="RRLPSGKTECWYILEAEPGSVLGLGLIREIASDELRSAVLDGSI
                     EELVHWQSVEAGDFIYVPAGTIHAIGAGISLLEFQQNADVTYRLYDYGRPRELHLDDG
                     MAVATRRPFDPSLMRKVRADEEIPLIERGHFGLVSATSDTFSDRMRWIMPILGQVRSG
                     GELARAGDILLAQPGDRVDYIDAWALTGISL"
BASE COUNT          712 a         1077 c         1047 g          699 t
ORIGIN      
        1 caattccctc atcgggatcg aacttcatcg tctcttcaag gtcgctcatc gccacctttc
       61 atcgacggac gatcgacaag aaacaagccc ccggtcgcac attgcgcagc attgcggcta
      121 tccctaaacc ttcgccatga aagccaaagc cgcgctgctc gttgctgtcc tctttatgtc
      181 gacctccgcc gctgcccagc ccaccgaccg aaaggtccaa gagcgaattg atcgcatctt
      241 gaaggcaacc ccgctcatcg acggtcacaa cgacatcgcg gaagagcttc gggaaaatta
      301 tggccttaaa gttgaaggcc tcgccagtgg gaccgacaaa tggaagccga agccgctgat
      361 gaccgacatg gcgcgacttc gcgacggccg catcggagct cagttctggt ctgtttacgt
      421 gccctcggaa gtcacgggcg acgcggcgat ccgggcgacg ctcgaggaga tcgacaccgt
      481 caagcgcatg gtgcgcgctt atcccaatga cctcgagctc gccggctccg ccgatgacat
      541 cgttcgcatt cacaaggccg gccgggttgc ttcgcttatc ggcgttgaag gcggacacca
      601 gattggcggc agcctcgcgg cgctgaggca attctatgat cttggtgcgc gttacatgac
      661 gctgacgcat ttcaagaata acgagtttgc cgacagtgca accgacgatc ccaagtacca
      721 cgggatcaac gagtttggcc gagccgtaat ctatgagatg aaccggatcg gcatgctcgt
      781 cgatctcagc cacgtttcgc ccgaaacgat gcgcgctgcc ctcaagatga caagggcacc
      841 agttctcttc acgcacagcg atgcgcgagc gctgtccgat catccaagga atgttccaga
      901 tgacgtactg aagctggttg cggccaatgg cggagtcgtc atggtgaact tctacatggg
      961 acatctgtca tccgcatatg ccgagtggtc tgcagagaag agtgcggagg aagcacgact
     1021 agaatcgctt tactctggcc agcccgatcg tcgcgccgcg gccatgagcg aatggctcgg
     1081 ttcacacccg gcgccgcatg cggatgtcgg attgatcgcc gatcatatcg aacatgtcgc
     1141 aacgactgca ggctatgacc atgtcggaat tggtggggat ctcgacggca tcggatttga
     1201 tgaggcccca gccggaatga atagcgttag cagttatcca ttgctgtttg ctgagctgat
     1261 ccgccgcggc tggtccgatg agaacctaag taagcttgct ggcgggaatg ttcttcgcgt
     1321 tatgcgcgaa gccgaagctg tcgcagcctc gatgaagaac caaccgccat ccatggaacg
     1381 ccttcgcccg tggtcgaaag atgatccgtg gaaatgagca cgacggagcc gccgctccgt
     1441 gcagcgatca tcccagtcac tcccttgcag cagaactgca ccttgctctg gtgcaccgcg
     1501 accatggcgg gcgcgttcgt ggatccgggt ggcgatctcc cgcgcctcaa agcggccgcc
     1561 gcaaaagccc aggtccgaat cgataaaatt ctcctgacgc acggtcatat cgatcattgc
     1621 gggagcgccg gcctcctagc acaggagctc ggtgttcccg tcgaagggcc gcacgaggac
     1681 gaccgatact ggattgatcg gctcgcccaa gacggatcaa aatatggcat tccgggcgcc
     1741 ccattcgagc cttcgcgctg gctcgatgac aatgaccagg tgcgtgtcgg cgaactcata
     1801 ttcaacgtcc gccactgccc aggccacaca ccggggcacg tcgtatttca tcacccggag
     1861 tcaaagctcg cgttcgttgg ggacgtgctt tttcgcggag ccgtcggccg ctgggatttt
     1921 ccccacggca accaagagca actgatacga tcaatcacgc gatgcttgtg gccaatgggc
     1981 gacgaaacgg cgttcgttcc gggccatggg ccaatgtcga ccttcgggca tgaacggcag
     2041 acaaacccct tcgtcgccga tgcgatcgtc ggcgcgcggg atggctgacc tgtttgccgg
     2101 cgtggagctc ggcggcacaa agtgcatcct gctcctcgcg cgcggcccag atgagattat
     2161 cgagcgggtg cagcttgata cgggcgatcc cgacgatacg ctttcctcca ttgagcatat
     2221 ccttgctcgg tggcagtccg ctactcgctt cgaagcgctt ggcattggaa gctttgggcc
     2281 tctcaacctc gatcctgctt cgccccgtta cggcgaagtc accaacagtc ccaagcttcg
     2341 ctggaggggt gcgagggtcc tctcgcgcct cagtgccgcg gcaggagttc ccgcgcgaat
     2401 cgacaccgac gtgaatggcg ctgcgcttgc ggaaatccgt tggggaagcg gccgaggata
     2461 tgaggacttt gcctacatca ccgttggtac cggcgtgggc gtcgggctga tcgtgaatgg
     2521 gcagccaacc cggggcttct ctcactgcga gctaggtcat atccggaccg cccggctccc
     2581 cggtgacgaa tggaaaggat cgtgcccgtt tcacggcgac tgcgtcgaag gactggcatc
     2641 aggaccagcg ctgaaggcac ggcttggctc cgagctcgcg ttgcagctcg atcgcgggca
     2701 ccccgtctgg aaatcggtga gctgggcgct tgctcaatta tgtcacacca ttgtctgtgc
     2761 tgcggctccc cgggcaattg cgattggcgg cggtgtcgtg gagggcaatc cgcacctcat
     2821 tcaagaggtg caggaaatgc tcgttgaaag cttggccggc tatgttgaga tcccggcgtc
     2881 acgccagccg tacgtaggcg cgcccgttct cggctccggc gcgggcccgc tcggtgcaat
     2941 agcgctcgca atgaccgcta gagactaatt ccagtcagcg cccaggcatc aatgtaatca
     3001 acgcgatcgc cgggttgcgc gagaagtatg tcgccggctc gcgcgagctc gccgcctgaa
     3061 cgcacttggc caaggattgg catgatccac cgcattctgt cggagaacgt gtcactcgtt
     3121 gcactgacga gtccgaagtg ccctcgttcg attaatggaa tctcttcgtc cgcgcgcacc
     3181 ttccgcatga gcgaagggtc aaaggggcgc cgtgttgcaa ccgccatccc gtcgtccagg
     3241 tgcaattcgc gcggacgccc ataatcgtaa agccgatagg taacgtcggc attctgctgg
     3301 aactcgagca gcgaaatacc ggcgccgatt gcgtgaatcg ttcctgctgg aacgtaaatg
     3361 aaatcgccgg cttcgacact ctgccagtgc accaactcct cgattgaacc atcgagcaca
     3421 gccgagcgaa gctcatcgct tgcgatctcg cgaatgagac cgaggccgag caccgaacct
     3481 ggttccgctt cgaggatgta ccagcattcg gtcttgccgc tgggaagtcg ccgct
//
LOCUS       DASRBJ010000123         2392 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_677229,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000123 DASRBJ010000000
VERSION     DASRBJ010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2392
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_677229"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..424
                     /locus_tag="VE968_03555"
     CDS             <1..424
                     /locus_tag="VE968_03555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="rRNA (cytidine-2'-O-)-methyltransferase"
                     /protein_id="HZU50931.1"
                     /translation="GREAAIREIMSVRATLVFYESGPRLSETLVALAEQLGNRDAAVA
                     REISKVHEECVAGRLSELAQRYAGSTPKGEIVVMVGPPSDTVEVTALELDHAIDDALT
                     RLSPSRAAAEVAERLGIPRKRAYSRALERSSGGAQNGA"
     gene            complement(464..1798)
                     /gene="rimO"
                     /locus_tag="VE968_03560"
     CDS             complement(464..1798)
                     /gene="rimO"
                     /locus_tag="VE968_03560"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003047393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008172 - S-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0018339 -
                     peptidyl-L-beta-methylthioaspartic acid biosynthetic
                     process from peptidyl-aspartic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HZU50932.1"
                     /translation="MNITTLPKPPRVGLVSLGCPKALVDSERIMTKLRADGYDMSPDY
                     AGAEVVLVNTCGFLDSAKEESLEAIGEAIAENGRVVVTGCMGKEADLIRERFPDVLAV
                     TGPQQYEEVVAAVHKAAPPVPSPFIDLVPEAGLKLTPRHYSYLKISEGCNHRCAFCII
                     PHLRGDLASRRPDAILREAEKLVAAGTRELLVISQDTSAYGVDIRHKAWPWKGSEVRA
                     HMTDLARELGRLGAWVRLHYVYPYPHVNDVIPLMASGLVLPYLDIPFQHASPDVLKRM
                     RRPANDAKVLERIRHWRAQVPDIAIRSSFVVGFPGETDEDFRYLLGWLEEAQLDRVGA
                     FKFEAVEGAPATSMADHVPAELKQERYEAVMALSARISAEKLGAKIGSTIDVLIDAVD
                     DETGGATGRSKADAPEIDGEVHLRDAGGLRSGDIVPVRVEDADEHDLFGVPI"
     gene            1914..>2392
                     /locus_tag="VE968_03565"
     CDS             1914..>2392
                     /locus_tag="VE968_03565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
                     /protein_id="HZU50933.1"
                     /translation="MRITMIGTGYVGLVSGACFADFGHEVCCVDKDSAKIDGLNNGIM
                     PIWEPGLEALVKSNVERGRLTFTTDLEAAVRHAEGVFIAVGTPARRGDGHADLSFVFQ
                     AVRELAKFIQPGAVVVTKSTVPVGTGDKIEAILRDEGVVDVSVASNPEFLREGAAIA"
BASE COUNT          460 a          696 c          753 g          483 t
ORIGIN      
        1 cgggcgagag gctgcgataa gggagatcat gtccgttcga gcgacgctcg ttttttatga
       61 aagcggcccg cggctgtccg agacactcgt cgcactggct gaacaattag gcaatcgcga
      121 tgcagcagta gcgcgcgaga tcagcaaggt tcatgaagag tgcgttgcgg gccgcttgtc
      181 ggaactggca caacgatatg ccggttcaac gccgaagggc gagatcgttg tcatggttgg
      241 tccgccatcg gacacggtcg aagtcacggc actcgagctc gaccatgcga tcgacgatgc
      301 gttgacgcgg ctgtctcctt cccgcgcggc agcggaggtc gccgagaggc tcggcattcc
      361 acgcaagcgt gcctacagtc gcgcgctcga acggtcctcc ggcggtgctc aaaacggcgc
      421 ctgagtggca attcgacatg cgccggtaac ttgtttgcct gacctagatc ggaactccaa
      481 agaggtcgtg ctcgtccgca tcttcgactc gtactggcac tatgtcgccg gacctcagac
      541 caccggcatc gcgcaggtga acctcgccgt cgatctcggg tgcatcggct tttgatcggc
      601 cagtcgcccc gccggtctcg tcgtcgacgg catcgatgag aacgtcgatc gtcgacccta
      661 tcttcgcgcc aagcttctcg gctgatatac gtgcggacag tgccatcacc gcttcgtagc
      721 gttcctgctt gagctcggcc ggcacgtgat cggccatcga tgttgccgga gcgccttcga
      781 ccgcttcaaa cttgaaagcc cccacgcgat caagttgtgc ctcctcgagc cacccgagga
      841 gatagcggaa gtcttcgtcc gtctcgccgg gaaaaccgac gacgaaggat gatcgaatgg
      901 caatgtcggg aacttgtgcg cgccaatgcc ggatccgctc gaggaccttc gcatcattgg
      961 ccgggcgacg catgcgcttc agaacgtcag ggctcgcatg ctgaaacggg atgtcgaggt
     1021 acggaagaac gagcccgctg gccatcagcg ggatcacgtc atttacgtgc ggataggggt
     1081 agacgtagtg gagcctgacc caagcgccga gccgtccaag ctcgcgcgcc aagtcggtca
     1141 tgtgggcgcg aacctcgctc cctttccagg gccatgcttt atgccggata tcgacgccgt
     1201 acgcgctcgt atcctggctt attacaagca gctcgcgcgt tcccgcggca accagctttt
     1261 cagcttcgcg aagaatggcg tcgggtcgac gactggcgag atcgccgcgc aagtgaggaa
     1321 tgatgcagaa ggcgcagcga tggttgcagc cttcggatat cttcagatag ctgtagtgcc
     1381 gtggcgtgag ctttagtccg gcttccggca ccagatcgat gaacggcgaa ggaactggcg
     1441 gcgctgcctt gtgcacggcc gcgaccactt cctcatactg ctgtggcccg gtcaccgcga
     1501 gcacgtcagg gaaacgttcg cggattagat cggcttcctt gcccatgcag ccggtaacga
     1561 cgacgcgtcc gttttccgcg attgcttctc cgatcgcctc gaggctctct tcctttgccg
     1621 aatcgaggaa gccgcaggtg ttcacgagca cgacctcggc accagcgtag tcgggcgaca
     1681 tgtcatagcc gtcggcgcgc agtttcgtca tgatccgctc actgtcgacc agtgctttgg
     1741 gacagccgag ggaaaccagc ccgacgcgag gcggcttggg gagagttgtg atgttcatcg
     1801 gaagagctgc gccaatatag tgattttggg gcaaaaacta ggccatcggc tgaacgcttg
     1861 ttcatcgcgg caaaggatgg ctaagggctg agcttggaaa tgcaggagta agcatgcgca
     1921 tcacgatgat cggcaccggc tatgtaggac tcgtctccgg tgcctgtttt gcggatttcg
     1981 gccatgaggt gtgctgtgtc gacaaggatt ccgcgaagat cgatggtctt aacaacggta
     2041 tcatgccgat ctgggagcca ggccttgaag cgctcgtgaa atcgaacgtt gagcgcggtc
     2101 ggctcacctt tacaacggac ctcgaagcag ccgtgaggca tgctgaaggg gtattcatcg
     2161 ccgtcggaac tcccgcgagg cggggcgatg gccacgctga cttgagcttc gtcttccagg
     2221 ccgtgcgtga gcttgcgaag ttcatccagc caggcgcagt cgttgtcacc aagtcgaccg
     2281 taccggtcgg caccggggat aagatcgaag cgatcttgcg cgatgagggc gtcgtcgatg
     2341 tatcggtcgc gtccaatcct gagttcctgc gcgaaggtgc cgcgatcgcg ga
//
LOCUS       DASRBJ010000124         7121 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_219782,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000124 DASRBJ010000000
VERSION     DASRBJ010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7121
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219782"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..841)
                     /locus_tag="VE968_03570"
     CDS             complement(<1..841)
                     /locus_tag="VE968_03570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010408292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HZU50934.1"
                     /translation="MFFAKDEFVRSDSGAVKLHPARNRRAERFALLSATFVALLAFAW
                     WFLGGKREPAAAMPPAQVAIAYPLQRRIVEYDELTGRFEPSRSVEIRPRVSGQLEALH
                     FKDGEFVHAGQLLFTIDPRPFAAALAEAQARAAAARTAAALADAELARALRLVPDEAV
                     SREEVDNLRAAAKSAHANIAANDALVAQRRLDLEFTSVRAPISGKISYRRVDPGSQVA
                     SGAGSTGTLLTTINAIDPIYFTFDVSEGLLLKAERERLPGRAQTIDIRLQDEPDYRWH
                     GAVD"
     gene            complement(841..1245)
                     /locus_tag="VE968_03575"
     CDS             complement(841..1245)
                     /locus_tag="VE968_03575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50935.1"
                     /translation="MAYLARIEPGDEKALSAPAPTGSKGQEPRFSDLEWSVIRLARLD
                     RLWTLRTPTRLSRFFRRLVGRNPNPALANPRLETLRRIAVLSWHFGFTVPGDDISEFL
                     RAGFSLEQYELLVSTVRGMAAKRSTFSKAGLA"
     gene            complement(1574..2185)
                     /locus_tag="VE968_03580"
     CDS             complement(1574..2185)
                     /locus_tag="VE968_03580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HZU50936.1"
                     /translation="MNKLGSICARGRPREFCTEQALARALEVFWSKGYEGTSLNDLTE
                     AMGINRPSMYAAFGNKEELFKKALDLYEREKMAYIGRALEQPTARLVAETMLRGAIEN
                     ATGGDQPHGCLRVINSVACGAEAESIRDEINARGKLAKAALIKRFEQAKSDGDLPPHV
                     DAQGMTAVLIAMLQGISLQARQGASREDLEQLAATGLTLWPSA"
     gene            2560..3576
                     /locus_tag="VE968_03585"
     CDS             2560..3576
                     /locus_tag="VE968_03585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HZU50937.1"
                     /translation="MQTRQLGRNGPRVSAIGLGCMGISFEYSGKVSKEEGIALIRAAF
                     ERGVTFFDTAEVYGPFGNEEVVGEALRPIRDKVVIATKFGFDIDPLTGENRGGTNSEP
                     NRIKKAVEGSLRRLQTETIDLLYQHRVDPNVPIEEVAGAVGDLIREGKVKHFGLSEPG
                     VRTLRRAHAVQTVSAVQNEYSLWWRAPETNGILEACDELAIGFVPYSPLGRGFLTGTI
                     TKELPSGDFRANMPRFQAAALEKNKVFVDLLKRVADEKGATPAQIALAWLLAQRPFIV
                     PIPGTTKLHRVEENVAAASLQLTDEDLREINEAASKIEVEGDRYAPAQMAMVGRDAPE
                     RAEA"
     gene            complement(3634..3984)
                     /locus_tag="VE968_03590"
     CDS             complement(3634..3984)
                     /locus_tag="VE968_03590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50938.1"
                     /translation="MPRLASVRPRSWKVRNLVLGFAITAFSVGEAHSAQAPVRYACST
                     SENLTLVRTSQDARVQLGGHSYELKRARSSIGSKYLSTNAALIIDGPSLIFVADDNPN
                     LGPCVKAVPVAATR"
     gene            4360..5073
                     /locus_tag="VE968_03595"
     CDS             4360..5073
                     /locus_tag="VE968_03595"
                     /inference="COORDINATES: protein motif:HMM:NF014816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HZU50939.1"
                     /translation="MTEASMLTQPQPTYTASSNEVTPRRLYDSFGMNPRIVRFYLAEK
                     GIDLPRQEVDILGAENRRTDHLERNPAGQLPTLELSDGTFIAETAAIIEYLEELHPQP
                     PLVGSTPEERAITRMWWRRVEIGICRPMVLGFYYGEAIDIFESRFKCYPEQADAQKEI
                     ARTGTRWLDGAMNKPWLAGDRFTAADICLYCYIDQLCDVGQPIAPDLRNVNDWFDRVG
                     KRSAAKRSIWRDRPMGMRG"
     gene            complement(5100..5855)
                     /locus_tag="VE968_03600"
     CDS             complement(5100..5855)
                     /locus_tag="VE968_03600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HZU50940.1"
                     /translation="MIRALGLAVADLGTPRVLAVMLRAIAISMLVFVVIAGVLAWLLT
                     GVDPCDLVGISSCPLGAGTGVIGAITLTLLAAWFVFPAVAITVLTTFTDSIAAAVEER
                     HYPEAARRASRVGIGRGLLIGLKSAGRLLLLNVIALPSYLLLLVTGVGPFVLFVIVNG
                     VAFGRDVAELAAARHGNKVSRREWLKSTRGQQHLIGLVVSVLFLVPFANILAPVIGTA
                     AGIHLFNRSFWRMNLDKRELGPGSRRPRINAGA"
     gene            complement(5946..>7121)
                     /locus_tag="VE968_03605"
     CDS             complement(5946..>7121)
                     /locus_tag="VE968_03605"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HZU50941.1"
                     /translation="IVRERPTEPKLWCTLANSLTTVGRLDEAVAALVRATKQAPKSGE
                     PWWHLSNLKSYKFSPAEIALMKQALMQASSDDDRLHIHFALGKAFEDARAFEESFRHY
                     AAANAIGASRFGENQTITAQIDQSVALLTPEFFERNKGAGCNEAGPIFVVGVHRSGST
                     LIEQILASHSMIEGIAELPVIANVCGRLEREMRMPAPRAIASLPPSAFSEIGEEILEA
                     FRPFRRTERPYFVDKKPGNWVCLGLVRVALPNARIIDARRHPMACGFSNFKQHYPKGV
                     GFASRLRTIGTFYQDYWRFMNHFDRVQPGVVHRVVNEHLVSDPEHEIRTMLGYLGLPF
                     EASCLEFHRNQRAVRTPSAEQVRQPINSKGVEQWKNYEPWLGELKEALGPALHHWND"
BASE COUNT         1465 a         2040 c         2209 g         1407 t
ORIGIN      
        1 agtccacggc gccatgccag cggtagtcgg gctcgtcctg aaggcggata tcgatcgtct
       61 gcgcgcgtcc cggcaggcgc tctcgctcgg ccttgaggag cagcccttcc gagacgtcaa
      121 aggtgaagta gattggatcg atggcgttga tggtggtgag gagcgttccg gtacttccag
      181 caccacttgc gacttggctg ccgggatcga cgcgccgata ggagattttg ccgcttatcg
      241 gggcgcgcac gctggtgaat tcaaggtcga ggcgccgctg tgcaacgagc gcgtcgtttg
      301 cagcgatatt ggcatgcgcc gatttcgcgg ccgcgcggag attgtcaact tcttccctcg
      361 acacggcctc gtcaggaacg aggcgaagcg cgcgagcaag ttcggcatcc gcgagcgctg
      421 cagcggtccg cgctgccgca gcccgagctt gagcttcggc aagtgcggct gcaaacggcc
      481 gtgggtcgat cgtgaagagc agttgccccg catgcacaaa ctcgccgtct ttgaaatgga
      541 gtgcttcgag ctggcccgag acgcgcgggc ggatctcgac cgatcgactt ggctcgaacc
      601 ggccagtcag ttcgtcatat tcgacgatcc ggcgctgtag cggataggca attgctactt
      661 gggcgggcgg catcgcagcc gccggctcgc gctttccacc aaggaaccac caggcgaatg
      721 caaggagcgc aacgaatgtg gcgctgagca gtgcgaaacg ctctgcgcgg cggtttcgcg
      781 ctgggtgaag cttcacggct ccgctatcgg atcggacgaa ttcatctttg gcgaaaaaca
      841 tcaggcgagt cccgcttttg aaaaagtgct gcgcttcgcg gccattcccc ggacggtgct
      901 gacaagcagc tcgtattgtt cgaggctgaa gcccgctcgc aagaattcgg aaatgtcatc
      961 accggggacg gtgaatccga aatgccagct gaggaccgcg attcggcgca gcgtttcgag
     1021 gcgcgggttt gcaagagctg ggttgggatt gcgtcccacg aggcggcgga aaaatcggct
     1081 aaggcgagtg ggcgttcgca gggtccatag ccggtcgagg cgcgcgagcc tgatgacgga
     1141 ccattcgaga tcgctgaagc gcggttcctg tcctttgctc ccggtcggag caggcgccga
     1201 cagagccttt tcgtcccctg gctcaattcg cgcgagataa gccatgtcat tcctccgttt
     1261 gctgcgcgag caggatcgtt cgcaagagga gggatgtcct ccagcgtgcg gctctccagg
     1321 cgcaaaagtc cgttcgtcag agcggcaagc tcgtgacggt gcttatgttg gtttacgggc
     1381 tactggcggg tgtcaggccc gcggaaagaa ggtgttcacg tttagactca tcgccccttt
     1441 gtcttgccga tggtcgaagc agctcggcag aaaagtaccg aactcctttc tgtaccgttc
     1501 agtaaaaaga caggtaagcg ccgtcaagaa gatttctata ccgggcgata aaaaattttt
     1561 tgaagcccag aagtcaggct gatggccaga gcgtcagccc cgtcgcggcc agctgctcga
     1621 ggtcttcgcg cgacgctccc tgccgcgctt gcagggagat gccctggagc atggcgatca
     1681 acaccgcggt catgccttga gcgtcgacgt gcggcgggag gtcaccgtcg ctctttgcct
     1741 gctcgaagcg cttgatcagc gcagcctttg caagtttccc gcgggcgttg atttcgtcgc
     1801 ggatgctctc ggcttcagcg ccgcacgcga ccgaattgat aacgcgcagg cagccatgcg
     1861 gctgatcgcc gccggtcgca ttctcgatag cgccgcgaag catggtctcg gcgacgaggc
     1921 gcgccgtcgg ctgttcgagt gcccgcccga tgtaggccat cttctcgcgc tcgtagagat
     1981 cgagggcctt cttgaagagc tcttccttgt tgccaaaggc cgcgtacatg cttggccggt
     2041 tgattcccat cgcctcggtg aggtcgttca gcgaggtacc ctcgtatccc ttgctccaga
     2101 atacttcgag tgcacgggcg agtgcctgct cagtacaaaa ctcgcgcggc cggccgcggg
     2161 cgcagatcga accgagctta ttcatatcga gtggtacata aatacgctcg caccggaagt
     2221 ccagtggccc tccggtccta agctcagcct ctcgactgat gcagcgcgat tgcgcgagcc
     2281 acctcgtgcc aatgggagaa agaattgttc gttgcgggca ccggcgtcga aggctcgcgg
     2341 ccgctattgc aggcgggcgg cgacgatgga cttcaccgat catcgccccg aaaggctgat
     2401 gaaatgaagc aaacgcgcgc cggaaagccg gttggaacgt ggcttggttg tgggccgggg
     2461 cgtagagcct cgattcaacg gagcactggg cctttcatcg atggttggga acgagcgggc
     2521 ttcctcgttc tcgacaggtt tttttcaagg agaacaccaa tgcagacgcg tcaactcggt
     2581 cggaatggac ctcgagtgtc ggcaattggc cttggctgca tgggcatcag ctttgaatat
     2641 tccggcaagg tgtcgaagga agagggcatc gcgctcatcc gtgcagcctt cgagcgtgga
     2701 gtcaccttct tcgatacggc ggaggtttat ggaccgttcg gaaacgagga ggtcgtcggc
     2761 gaagcgcttc ggccaattcg ggacaaggtc gtgatcgcaa ccaagttcgg cttcgacatc
     2821 gaccctttga cgggtgaaaa tcgcggcggc acgaacagcg agcccaaccg catcaagaag
     2881 gccgtcgagg gctcgctccg ccgccttcaa accgagacga ttgatcttct ctatcagcat
     2941 cgggtcgatc ccaatgttcc gatcgaggag gttgccggtg ccgtcggcga cctaattcgc
     3001 gagggtaagg tcaagcattt tgggctctcc gagcctggcg tccggactct ccgccgcgcg
     3061 catgcggtcc agacggtgag tgccgtgcaa aacgaatatt cgctctggtg gcgcgcaccg
     3121 gagaccaacg ggatcctcga ggcatgcgat gaactcgcaa tcggcttcgt gccgtatagc
     3181 ccgcttggaa ggggctttct caccggaacg attacgaagg aactgccttc cggcgatttt
     3241 cgcgccaaca tgccgcgctt ccaggcggca gccctcgaga agaacaaggt tttcgtcgac
     3301 ctcctcaagc gcgttgcgga tgagaagggc gccactccag cgcagattgc gctcgcgtgg
     3361 ctgcttgcgc agcggccgtt cattgtgccc atcccgggga cgaccaaact ccaccgggtc
     3421 gaggagaatg tagcggccgc gagcctgcaa ctgaccgacg aggaccttcg cgagattaac
     3481 gaggcggcgt cgaaaataga ggtggagggc gaccgctatg ccccggcgca gatggcaatg
     3541 gttggacgcg atgctccgga aagagcggag gcgtgaatga ctgacggatg ctggagattt
     3601 ttccatgcgt tcgactgacc gctcgtcctc acgctagcgt gtggcggcga ccggaacagc
     3661 tttgacgcaa ggtccaagat ttgggttgtc gtccgcgacg aagatcagcg aaggaccgtc
     3721 aatgatcagt gcggcgttgg tcgagagata tttgctgcca atgctggagc gagcacgttt
     3781 gagctcatag ctatggccac caagttgaac gcgcgcatct tgcgacgtgc ggacaagcgt
     3841 cagattctcg ctggtcgaac aggcataacg aacaggggct tgggccgaat gcgcctcgcc
     3901 gacactaaac gccgtgattg cgaacccaag gacgaggttc cgaaccttcc agcttcttgg
     3961 ccgaactgac gcaagccgcg gcatcagaaa agaagcttat aagtttcgac gagagcgccg
     4021 aacgtcccga gtgaaacagc ggtcataatc gcgaacactc gcaatgtaag atcttgtttt
     4081 tcaatcataa gccgccgaac tcccgaaccg gcaccaaggt ccatgggcgg atgtgaaaaa
     4141 atttggccgc tcgtcccaat ccggggcgaa gcgtcatttt ctctcttttc agccctttcg
     4201 tctcgatcat tctcgtcgtc cgcaggctat cccaaattcg ggatgtaggc accgtgaaat
     4261 ggtggtattt tgggccgctc gccttcgatc ccgcgtgccg gctgtgggcg agaaaaaaat
     4321 gggaccgggg acgctgacag tcaacggaag gacctgccca tgaccgaggc atcaatgctc
     4381 acgcagccgc aaccgaccta cacggcatca tcgaacgagg tcacaccgcg acgtctctac
     4441 gacagctttg gcatgaaccc gcgcatcgtt cgcttctacc ttgctgaaaa gggaatcgat
     4501 ttgccgcgac aggaagtcga catcctgggg gcggagaacc gtcgcaccga tcatctggag
     4561 cgaaatcccg ccggccagtt gccgacgctc gagctgtcgg acggcacgtt cattgccgaa
     4621 acggcggcga tcatcgaata tctcgaggag cttcaccctc agccgccgtt ggtcggctcg
     4681 acacccgagg aacgggcaat cacccggatg tggtggcgcc gggtggagat cgggatctgc
     4741 cgtccaatgg ttcttggctt ttattacggg gaggcgatcg acatcttcga atcgcggttc
     4801 aaatgctatc ccgagcaagc cgatgcgcaa aaggagattg cacgaaccgg gacgcgatgg
     4861 ctcgatggcg cgatgaacaa gccatggctt gccggcgatc ggttcacggc tgccgacata
     4921 tgcctttatt gctacatcga tcagctttgt gacgtgggtc aaccaatcgc gcctgatcta
     4981 cgaaacgtga acgactggtt cgaccgtgtc gggaagcgct cggccgccaa gcgaagcata
     5041 tggcgcgatc ggccgatggg catgcgcggt tagcgctagc tcctatcgag cgagaatctt
     5101 taggctccag cgttgatacg gggccgccgc gaacctggac caagctctcg tttgtcgagg
     5161 ttcatgcgcc aaaatgatcg gttgaagagg tggattcctg ccgctgtccc aatgaccggt
     5221 gcgaggatat tcgcgaacgg cacgagaaaa agcacgctca cgacgaggcc aatgagatgc
     5281 tgctgcccgc gcgtggattt cagccattcg cgccgcgaca ccttgttccc gtgccgcgct
     5341 gccgcaagtt cagcgacgtc gcgcccgaag gcgacgccat tgacgatcac gaaaagaacg
     5401 aagggtccga caccggttac aaggaggagg aggtaggagg ggagagcgat cacattgagc
     5461 aatagaagtc gcccggccga cttgagccca atgagcaatc ctcgcccaat accgacgcgt
     5521 gaagcgcgcc gcgcggcttc cgggtaatgc cgttcctcga cggcagcagc gatgctgtcg
     5581 gtgaatgtcg taaggacggt gatcgcgacg gcggggaaca cgaaccaggc ggcaagaagt
     5641 gtgagcgtga ttgcgccaat aacgccagtt cccgcgccca atggacagga gctgatccca
     5701 accaaatcac aagggtctac accggtcaac agccaggcga gcacgccggc gataacaaca
     5761 aagacgagca tggaaatggc gatcgcgcgc aacatcacgg caagcactcg aggagtgcca
     5821 aggtctgcga cagcaaggcc aagtgcccgg atcatgcggc gctaacgcat catctatcgc
     5881 gaagtgcatt tcgcgacgtc cgcaaccgat gtcgccccgg tggtcaggac ccacgcctcg
     5941 tcgctttagt cattccaatg gtgaagcgcg ggcccaagcg cttccttcag ttcgccgagc
     6001 cacggctcgt aatttttcca ctgttcgacg cccttactgt taattggctg acgaacctgc
     6061 tcggcgcttg gcgttcgcac ggcccgctgg tttcgatgaa attcgaggca tgaggcttcg
     6121 aacggcagac cgagatagcc gagcatcgtc cggatctcgt gttcgggatc agagacgaga
     6181 tgctcgttca caacccggtg aacgacaccc ggctgcacgc gatcgaaatg gttcatgaag
     6241 cgccaataat cttggtagaa cgtgccgatc gtccgcagtc gggacgcgaa accgacgcct
     6301 tttgggtaat gttgtttgaa gttcgaaaac ccgcacgcca tcggatgacg ccgtgcatcg
     6361 atgatccttg cgttcggaag tgcgaccctg acgagaccga ggcacaccca gtttccgggt
     6421 ttcttgtcga cgaaataggg ccgctctgtt ctgcgaaacg gacggaaggc ttcgagaatt
     6481 tcctcgccaa tttcactgaa tgctgacggt ggaagcgatg ctatggcgcg tggtgcgggc
     6541 atcctcatct cgcgttcgag acgtccgcac acgttcgcga tgaccggaag ctcggcaatg
     6601 ccttcgatca tcgaatggct ggcaaggatc tgttcgatca aggttgaacc cgaacgatgc
     6661 acgccaacga caaatattgg tcctgcttcg ttgcagccgg ctcccttgtt tcgttcgaag
     6721 aattcaggcg tgaggagagc gaccgactgg tcaatctgcg ccgtgattgt ctggttttcg
     6781 ccaaaacggc tcgcgccaat ggcattcgcg gcggcatagt gacgaaagct ttcctcgaat
     6841 gctcttgcgt cctcgaaggc tttgccaagg gcgaaatgga tgtggaggcg gtcgtcgtct
     6901 gaggacgctt gcatgagtgc ctgcttcatc agcgcgatct cggccggact gaacttgtag
     6961 gatttcaagt tcgacaaatg ccaccagggc tcaccggact tcggcgcctg tttggtcgct
     7021 cgcaccagcg ctgcgaccgc ttcgtcgagc cttccaacgg tcgtcagtga atttgcaagg
     7081 gtacaccaga gcttaggctc ggttggacgc tcgcgaacaa t
//
LOCUS       DASRBJ010000125         2845 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_677332,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000125 DASRBJ010000000
VERSION     DASRBJ010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2845
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_677332"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..242
                     /locus_tag="VE968_03610"
     CDS             <1..242
                     /locus_tag="VE968_03610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50942.1"
                     /translation="SQFGLLATAAVIPYAYMQMLDGYGYKLAGGVAGSFMMDALVSVA
                     ACLLLVFPVIAWLRAGKLDSGPATDRALPSHEAEA"
     gene            373..>2845
                     /locus_tag="VE968_03615"
     CDS             373..>2845
                     /locus_tag="VE968_03615"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU50943.1"
                     /translation="MALASPPFTATLQDQITASPKNGPADQAQKREDRASIIITGSRI
                     PRQNPTAVSPVAVITGADYKFEGAVLTEDITNQLPQVTPDQGAFISNSATATSTINLR
                     DLGASRTLVLINGRRLLPGDPTYPAADINMIPSSLIERVEVLTGGASSVYGSDAVSGV
                     VNFILDTNIDGVRLDAQTSFYQHQNRDSAVRPLLIAAGDPFPVGNTVHAANRNLDAAF
                     GRSFLDGRAHVTVYGGYRKLSALTQNERDYSACTFEATPSRPNGPYCGGSSASATGTF
                     GTFFGAFHLGPGQTFLRGQSLFNFAPFNYYQRPDRRYTAGSFASIEFNDAIKPFAEIM
                     YMDDRSVAQIAPSGDFAGDTFGINCDNPLLSAQQRSSVCFNSNFVGQTPIFDDQGDLV
                     GVDGAPIPFTDPVTGATYFKGVLVIGRRNVEGGPRRDNRRHQDLRVVGGVSGDVGRGI
                     TYDASYTASRVKFSDAYLNDVSVTRLSRALDVVTDPNSGQAVCRSVLTGEDPSCVPWD
                     VFVFGGVTPAAAAYIALPASQTASIEQRVANANATIDLQQWGMSSPLADEGPQLNLGA
                     EYRKDSLDFRPDAAFQSGDLAGQGQAVIPFTGATRAMEIFGEARLPLISRRFIEDLAI
                     EGGYRHSWHSDRISSFGASSSKAAVELAPIRGIRFRASLQHAVRAPNIQELFAPVYPE
                     GFDHDPCAGVSPTATYQQCAHTGVSMAQYGHILANPFGEDDLGYNSIEGGNTALGPET
                     SNTRAIGLVLEPGFMPGLSATIDAYDIRIRGAVEVVGAQAIMNTCIATGDPLFCNRIH
                     RDSNGSLWQSLRGYIDDTNANIGERT"
BASE COUNT          556 a          897 c          842 g          550 t
ORIGIN      
        1 cgagccagtt tggactactc gcgacggcag ccgtgatacc ttacgcctac atgcagatgc
       61 tggacggcta cggctacaag cttgccggtg gcgtcgctgg atccttcatg atggatgcgc
      121 tggtcagcgt tgccgcctgc ctgttgctgg tcttccccgt catcgcctgg ctgcgcgctg
      181 gcaagctcga ctccggtccc gctaccgatc gtgcgctacc tagtcacgag gccgaggcat
      241 aggtggcatt tcatgaaccg cggcctatgg tagcggaatt atccgagcgt gtgcgtcggg
      301 agctcggcct aggtcgcggg ggtagcgtac ttgggggcac gatggcttcg gcacggggtt
      361 agcccgctca cgttggcgct tgcatcgccg ccattcaccg caacgctgca ggaccaaatc
      421 accgcttcac cgaagaacgg accagcggac caggcgcaga agcgggaaga ccgagcttcg
      481 atcatcatta ccggctcgcg cattccgcgg caaaacccga cggctgtcag tccagtggcc
      541 gtgattaccg gggcggatta caagtttgaa ggagcagtcc ttaccgaaga tatcaccaac
      601 cagctgccgc aggtaactcc agaccagggc gctttcattt cgaacagcgc gacggcgacg
      661 tcgacaatca acttgcgcga cctcggcgcg tcgcgcacac tagtgctcat caacggccgc
      721 cggctgcttc ctggcgaccc gacctatccc gcagccgata tcaacatgat cccgagctcg
      781 ctcatcgagc gcgtcgaggt actgaccgga ggcgcgtcgt cggtctatgg ttcggacgcg
      841 gtttccgggg tcgtcaactt catcctcgac acgaacatag acggggttcg gctcgatgcg
      901 cagacaagct tctatcaaca ccaaaaccgg gattcggcag tccggccgtt gctgattgcc
      961 gccggtgatc ctttccccgt cggcaatacg gtccacgccg ccaaccgcaa ccttgatgcg
     1021 gcgttcggca gaagcttcct tgatggacgc gcgcatgtca ccgtttacgg cggctaccgc
     1081 aagctctctg cgcttacgca gaacgagcgc gactatagcg cttgcacgtt cgaggccacg
     1141 ccgagcaggc ccaatggtcc atactgcggc ggttccagtg cgtcggcgac cgggacgttt
     1201 gggacattct tcggcgcttt ccacctgggg cccggccaga cgttccttcg aggccaatcg
     1261 ctcttcaatt tcgctccatt caactactac caacgtcctg accgtcgcta cacggcgggc
     1321 agcttcgcga gcatcgaatt caacgacgca atcaagcctt tcgctgagat tatgtacatg
     1381 gacgatcgct cggtcgcgca aatcgctcct tccggagact tcgcgggcga cactttcggg
     1441 atcaattgcg acaatccgct gctgtcagcg cagcaacgaa gcagcgtctg cttcaacagc
     1501 aatttcgttg ggcagacgcc gatcttcgac gaccagggcg atctcgtcgg agtcgacggc
     1561 gcgccgatcc cgttcacgga cccggtcact ggtgcgacct acttcaaggg agtcctggtg
     1621 atcggccggc gcaatgtcga aggtggaccg cggcgcgaca accgcagaca ccaggatctt
     1681 agagtcgttg gaggcgtcag cggcgacgtt ggccgcggga taacttacga cgcgagctac
     1741 acggcaagcc gagtaaagtt cagtgacgct tatttgaacg acgtatccgt gacgcggctt
     1801 agccgcgccc tcgacgtcgt aactgatccg aactccggcc aagccgtctg tcgctcggtg
     1861 ctcacgggag aagacccctc gtgcgttccc tgggacgtct tcgtcttcgg cggagtgacg
     1921 cccgcagcgg cggcgtatat cgctctcccg gccagtcaga cggcgagcat cgaacaacgt
     1981 gtggcaaatg ccaatgcgac gatcgatctt cagcagtggg gaatgtcgag cccgttggcg
     2041 gatgaagggc cgcagctcaa tctcggcgcc gaataccgca aggattcgct cgatttcagg
     2101 ccagacgctg catttcagag cggagatctc gcaggccaag ggcaggccgt cattccgttc
     2161 accggcgcaa cccgcgccat ggaaatcttc ggcgaagccc ggcttccgct gatcagccgt
     2221 cgatttatcg aggacctcgc gatcgaaggt ggttatcgcc actcgtggca cagcgatcgc
     2281 atcagcagct ttggtgcgag cagctcgaag gcagcggttg agttggcgcc gatccgcggg
     2341 atccgcttcc gtgcgagctt acagcatgcg gttcgcgctc cgaacatcca ggaactgttc
     2401 gcgcccgttt acccggaagg tttcgaccat gatccttgcg ccggcgtctc gccgacagcg
     2461 acgtaccaac aatgcgctca tactggcgtc tcgatggcgc aatatggtca catcctggcc
     2521 aacccattcg gcgaagacga cctcggctac aattcgattg aaggaggtaa tacggcgctt
     2581 ggtcccgaaa cctcgaacac gcgcgcgatc gggctagtcc ttgaacccgg tttcatgcct
     2641 ggcttaagcg ccaccatcga cgcgtacgac attcggatcc gaggcgcggt cgaagtggtc
     2701 ggcgctcagg caatcatgaa cacatgcatc gcaaccggcg acccattgtt ttgcaaccgc
     2761 attcaccgcg attctaatgg cagcctctgg cagagtctgc ggggatacat cgacgacacc
     2821 aacgccaata tcggtgagcg gaccg
//
LOCUS       DASRBJ010000126        10079 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_621472,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000126 DASRBJ010000000
VERSION     DASRBJ010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 10079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10079
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_621472"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..146)
                     /locus_tag="VE968_03620"
     CDS             complement(<1..146)
                     /locus_tag="VE968_03620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017182224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HZU50944.1"
                     /translation="MADQYDVVVLGSGPGGYVAAIRAAQLGLKTAIVERENLGGICLN
                     WGCIP"
     gene            complement(139..489)
                     /locus_tag="VE968_03625"
     CDS             complement(139..489)
                     /locus_tag="VE968_03625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010413489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog domain-containing protein"
                     /protein_id="HZU50945.1"
                     /translation="MPADTNPYGGVFGGWLMGQMGLACGSFASRRSRGKAILVAADAV
                     RFPGPMAVGDELSVYVELLNQGRSSLRLKAEAVARERDGETQKIVAEGEFTFVALDDN
                     NKPRSFAAEEEANG"
     gene            complement(525..965)
                     /locus_tag="VE968_03630"
     CDS             complement(525..965)
                     /locus_tag="VE968_03630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50946.1"
                     /translation="MFVKTISGRYYPLASIEHLFESEESRGTKVQSARLKDGNSEQLC
                     PGELDRVLEASAHPFPAARDTYVLQEVVDENNRSIVERVPVLAWIVSPTRGVVPITIE
                     GVNHGLDGTPAVLMPNGEVVVALSCTYASEQCYFAELRSSAEVA"
     gene            complement(975..2339)
                     /locus_tag="VE968_03635"
     CDS             complement(975..2339)
                     /locus_tag="VE968_03635"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020819234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004738 - pyruvate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0004742 - dihydrolipoyllysine-residue
                     acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex dihydrolipoamide
                     acetyltransferase"
                     /protein_id="HZU50947.1"
                     /translation="MPIELKMPALSPTMEEGTLAKWLVKEGDKVASGDILAEIETDKA
                     TMEFEAVDEGTVAKILVPEGSEGVKVGAPIAILAGEGEDTSSAASAAPKADTAAPVPP
                     KSAPQPRADATPKSAVTPASNSERVSAQKAPPSPSEANQASPTEGQRIKASPLARRLA
                     QAQNIDLASIKGSGPDGRIIRADIDAASARGAPAAKPPSIQAPQPTPAAPAPATHLVM
                     PGPIEEAIPHEAIKLSNIRKTIARRLSEAKQQIPHIYLTVDIQLDALLKLRSELNQGL
                     ATRNVKLSVNDLLIKALAQALAEVPQCNVAFAGDHMLQYKRADISVAVSIPAGLITPI
                     IVGADTKSVSAISTEMKDLAERARDGKLQPQEYQGGTASISNMGMFGIKQFEAVINPP
                     QGMIMAIGAGEKRPYVINDSLQIATVMSATGSFDHRAIDGADGAKLMKAFKELVENPL
                     AMLA"
     gene            2462..2929
                     /locus_tag="VE968_03640"
     CDS             2462..2929
                     /locus_tag="VE968_03640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HZU50948.1"
                     /translation="MGESRRTYLVVVDDSTESRVALRFAARRAAKTGGKIEVLGIVEP
                     QDFVQFGGVQAAIEEEQRHRIEGVVSSAIGEILDESGVEANVVVRQGEAVRTVREFIG
                     ERDEVCALVLGAAARGNPGLLVADFAGTDAGLLPCPVMIIPGALTDERLEFLS"
     gene            complement(2926..3405)
                     /locus_tag="VE968_03645"
     CDS             complement(2926..3405)
                     /locus_tag="VE968_03645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017663763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033745 - L-methionine-(R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HZU50949.1"
                     /translation="MYDFKIAAADPASMYRDLSSALTGLIAGEPDPIANMANAAALIW
                     ETLPNLNWAGFYRNIGGELVLGPFQGRPACIRIPFGRGVCGTAAATRSVQRVDDVNAF
                     EGHIACDSASASELVVPIVRGGELVAVLDLDSPLVARFTRDDEAGCVALAQILADAI"
     gene            complement(3405..3815)
                     /gene="arfB"
                     /locus_tag="VE968_03650"
     CDS             complement(3405..3815)
                     /gene="arfB"
                     /locus_tag="VE968_03650"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008071102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome rescue aminoacyl-tRNA
                     hydrolase ArfB"
                     /protein_id="HZU50950.1"
                     /translation="MRPDDVIINEDALTESFLAATGPGGQNVNKVATAVQLRVDLFKL
                     GLEPHVYQRLKELGGSRITSSGELLVTARRYRTQEANRADARRRVAEMIAAAHIVRAK
                     RKATRPTRAAKAERVEKKRQRSAVKQARGKVSFD"
     gene            complement(3805..4455)
                     /locus_tag="VE968_03655"
     CDS             complement(3805..4455)
                     /locus_tag="VE968_03655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pseudouridine synthase"
                     /protein_id="HZU50951.1"
                     /translation="MSLSDNILFIDGEAIVLDKPAGLPVDRPRRGGESIAGRIEELKC
                     GFKRPPTAMHRLDTDTSGCLLFARNAKARAQFQLAFETRMVEKYYLAVVAAEVRDQEG
                     MIEIPLAKRSSPEAGWRMVADGEGSEAATLWRRLQVSDGRTLVEFRPLTGRTHQIRAH
                     AREAFGRGIVGDRVYGVPGGPMLLHASRLIVPRPGKAAIDVAAPLPDYFDAWRHAA"
     gene            4696..5409
                     /locus_tag="VE968_03660"
     CDS             4696..5409
                     /locus_tag="VE968_03660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HZU50952.1"
                     /translation="MRVLLIEDEPTTAKSIELMLGTEGFNVYTTDLGEEGLDLGKLYD
                     YDIILLDLNLPDMHGYDVLKKLRTAKVSTPVLILSGIGEMDSKVRALGFGADDYVTKP
                     FHRDELVARIHAIVRRSKGHSQSVIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLEL
                     LSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLRKKLSLACGGANYIETVWGRG
                     YVLRDADENEENEPQVAVA"
     gene            complement(5467..6279)
                     /locus_tag="VE968_03665"
     CDS             complement(5467..6279)
                     /locus_tag="VE968_03665"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009822075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004057 - arginyl-tRNA--protein
                     transferase activity [Evidence IEA];
                     GO_process: GO:0016598 - protein arginylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HZU50953.1"
                     /translation="MSAPFRFPKFFVTNPSPCPYLPGKVERKVFTELSGRHASELNEA
                     LGRIGFRRSQSVAYRPSCIDCSACISVRVLSAEFQPTATQRKLLRRHADLEVSACKPW
                     TTDEQYQLLRRYLSVRHPGGGMAEMDESDFADMVEQTPVRTYIIEYREPSVDGRPGKL
                     VGACLSDQQSDGLSMIYSFFDVGPNSRKGLGTFIILDHIIRAARAGLPYVYLGYWVEG
                     STRMAYKTSFKPLERLGRDGWRRMDGAESDADGSRSINLPTRRERRRLLIDA"
     gene            complement(6401..7633)
                     /locus_tag="VE968_03670"
     CDS             complement(6401..7633)
                     /locus_tag="VE968_03670"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HZU50954.1"
                     /translation="MLQTPSLQPPTIDDVRAAQQRIQGAVIRTPMLISRTFSEITGAE
                     IWLKFENLQFTAAYKERGALNKLLQLTPEERARGVIAASAGNHAQAVAYHARRLGIPA
                     TIVMPESTPTVKVTQTAGHGAQVVLFGRIVDDAFAKARELALENGFVFVHAFDDPMII
                     AGAGTVGLEMLEDAPELDTIVVPIGGGGLMSGIAIAARAVKPDIELIGVEAELYPSMK
                     SAIEKCHMPLGGDTLAEGIAVKQPGELTSRILGELADDVLLVAERDLERAVAMLVGIE
                     KTVVEGAGAAGLAAILANRDRFAGKKVATLLCGGNIDTHLLANVLVRDLVRQGRIARL
                     HVAAHDQPGALAAITAKVYEAGVNVIEINHSRIFTRLPAKDTMIEVECEARDPRSIDD
                     VVARLEAAGFRVERASLD"
     gene            7687..9336
                     /locus_tag="VE968_03675"
     CDS             7687..9336
                     /locus_tag="VE968_03675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HZU50955.1"
                     /translation="MKKTVLAMIMTLLASPAWPDTLIEHANGIEIDAEGHLSRFTGIL
                     ITDEGKVARLIGPGEALPGAGVKIDAHGQTVLPGMIDAHGHVMELGRDALQLDVVGVR
                     SLGELQQRLRSYAAAHPDYKWLLGAGWNQELWPDKRFPTAADLDAIVPDRPVVLERVD
                     GHALVANSAAMRAAGVTSATTAPAGGEIINGVFVDNAKVLINRAVPLPTRADEDRQFA
                     KAQEILLGFGVTGVGSMSTSLDDWNTFRRSGEAGSLRVRLMVYLLGLDPLKAIPHPTS
                     WLYGDHLRAVGVKFFADGALGSRGAWLKQPYSDQPDTTGNRLHSNAELRSIENAAAAA
                     GFQIATHAIGDAANAQVIGNYEWLNGKYGANRRWRIEHAQIVDCSDLPRIGRGHMIAS
                     MQPTHQTSDRLMAEKRLGLGRLKCAYAWQSMLRTGAKLAFGTDFPVESPNPFPGLAAG
                     ISRQDMNGEPPGGWFPSERLSLGQALAAYTRGAAYAGFAEHRIGGLDPGQWADFIIVD
                     RDPTKVDPQQLARTKVLETWVGGKKVWGREVTSDSQALHGQ"
     gene            complement(9305..>10079)
                     /locus_tag="VE968_03680"
     CDS             complement(9305..>10079)
                     /locus_tag="VE968_03680"
                     /inference="COORDINATES: protein motif:HMM:NF025268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HZU50956.1"
                     /translation="TPCAGPFLGAALGTALLLPAIASLAVFAALGLGLALPFALVAFI
                     PPLRTRMPKPGRWMDRLKHFLAIPMAASAVAAMWLLYRLAGAEEFLLGLCAAAALLAL
                     LLFAGKRQRHGQSGAWALPAALCLCGLLLLIVSPRTVSHRHGSDASWSEARLADALHQ
                     HRPVFVYFTADWCLTCKVNETAAIDRSEVTDAFKRAHVRVLVGDWTNGDPAITRFLES
                     RGRAGVPYYLWYAPDGHIEELPQVLTPAMLIDRAKLASR"
BASE COUNT         1972 a         3017 c         3100 g         1990 t
ORIGIN      
        1 gggatgcagc cccagttgag gcagatcccg ccgagattct cgcgctcgac gattgcggtc
       61 tttagaccga gctgcgcggc gcggatcgcc gcaacatagc cacccggccc cgaaccgagc
      121 accacaacgt catattgatc agccattcgc ttcttcctct gccgcaaagg atcgcggctt
      181 gttgttgtcg tcgagcgcaa cgaacgtgaa ttcgccctcg gctacgatct tctgagtttc
      241 gccgtcgcgt tcccgggcga ctgcttcggc ctttaagcga agcgaactgc gcccctggtt
      301 caacagctcg acatagacgc tgagttcatc gccaaccgcc atcggtccgg gaaaccgaac
      361 ggcatcggcg gcaacgagga ttgccttgcc tcgcgaacgc ctcgaggcaa atgacccgca
      421 ggcaagaccc atctgtccca tgagccagcc gccaaagacg cccccgtagg gattggtatc
      481 ggcgggcatt gcggtcaccc gtatggaagg ttcgcgcgac aaggctaagc gacttcagca
      541 gacgatcgca attcggcgaa atagcattgc tcgctagcgt aggtgcagct cagcgcaaca
      601 acgacttcac cgttcggcat gagcacggcc ggcgttccgt cgagtccatg gttgacgccc
      661 tcgatcgtga ttggaacgac accgcgcgtc ggagagacaa tccacgcgag cacgggtacg
      721 cgctcgacaa tcgatcggtt gttttcgtca acgacctcct gaagcacata ggtgtcgcgt
      781 gcggcaggaa aaggatgggc gctcgcttcg agaacgcggt cgagttcgcc cggacatagc
      841 tgctcgctat tgccgtcctt gagccgtgcc gattgcacct tcgtgcctcg actttcctcg
      901 ctctcgaaca gatgctcgat cgatgctaga gggtaatagc ggccactaat cgtcttcacg
      961 aacatcgaag cctcctaggc aagcattgcc agtggattct caacgagttc cttgaatgcc
     1021 ttcatgagct tggcgccatc cgcgccatcg atcgcgcgat gatcgaagct gccggttgcg
     1081 ctcatgaccg tcgcgatttg caggctgtca ttgatcacat atggccgctt ctcgccggct
     1141 ccgatcgcca tgatcatgcc ttgcggcgga ttgatcaccg cttcgaactg cttgatgccg
     1201 aacattccca tgttcgagat cgacgccgtg ccgccctgat attcctgggg ctggagcttg
     1261 ccgtcacggg cccgttcggc aaggtccttc atctcggttg atattgccga aacgctcttc
     1321 gtatcggctc caacgataat cggggtgatg aggcccgcgg ggatggacac cgcgaccgat
     1381 atgtcagcac gcttgtactg gagcatgtga tcgcccgcga acgcaacgtt gcattgcggt
     1441 acctcggcca atgcctgggc aagcgccttg atcagtagat cattgacgct gagcttcaca
     1501 ttgcgcgtcg caaggccctg attgagttcg cttctcagct tcagcagtgc gtcgagctga
     1561 atgtcgaccg ttaggtaaat gtggggaatc tgctgcttcg cttcgctgag gcgtcgcgcg
     1621 atggtcttgc ggatgttcga gagcttgatt gcctcgtgcg ggattgcctc ctcgatcggc
     1681 ccgggcatga ccaggtgcgt tgccggcgcg ggagcggccg gcgtcggctg cggcgcctga
     1741 attgaaggcg gtttcgcagc cggtgcgcca cgggccgaag cggcatcgat atccgcacga
     1801 attattcggc catcgggacc gctgcctttg atcgaggcga ggtcgatatt ctgggcctgc
     1861 gccagacgcc tcgcgagtgg tgaggccttg atccgctgac cctccgtcgg tgacgcttgg
     1921 tttgcttcgg acggcgacgg cggagctttt tgtgcgctca cccgctcgct gttcgatgcc
     1981 ggagtgaccg cgctctttgg tgtagcgtca gccctcggtt ggggtgctga ctttggcgga
     2041 acaggtgccg cggtgtcggc cttcggcgct gcacttgctg ccgaagaagt gtcttctcct
     2101 tcgccggcca agatcgcgat cggcgcaccg accttgactc cttcgctgcc ctcggggacc
     2161 aggatcttcg caacggtacc ctcgtcgacg gcctcgaact ccattgtggc cttgtcggtt
     2221 tcgatctcgg cgaggatgtc gccgctcgcg accttgtcgc cttccttgac cagccatttg
     2281 gcaagggtgc cctcctccat cgtgggagac aaggctggca tctttagttc aatcggcatc
     2341 agcgcgttcc tgaaaaggcg tgggcggctc aaagccaatg cggcgggcgc ggtcaagtct
     2401 gcgccgaaac tctagtcgac agcttgcact taagcgtggt ttaacgcagc actggagagg
     2461 catgggggaa agccgccgaa cttacctggt cgtcgttgac gacagcaccg aatcgcgtgt
     2521 cgcacttcgc ttcgccgcgc gtcgcgccgc gaagacgggc ggtaaaattg aggtactggg
     2581 aatcgtcgag ccgcaggact tcgtccagtt tggaggggtg caggcggcga ttgaagaaga
     2641 gcagcgccat cgcatcgaag gagtagtcag ctcggcaatc ggcgagatac tggacgagtc
     2701 gggcgtcgaa gcaaatgtcg tggtccgaca gggcgaagcg gttcggaccg tgcgcgagtt
     2761 catcggagag cgggacgaag tctgtgcttt ggtgctgggt gctgctgcac gcgggaatcc
     2821 agggctgctg gtggcggatt tcgcgggaac cgacgctggg ctgctgccct gcccggtcat
     2881 gatcatccct ggagccctca ccgatgagcg gcttgaattc ctgagctaaa tcgcgtcggc
     2941 aaggatctgc gcaagcgcca cacaccccgc ttcatcgtcc ctcgtaaacc gcgccaccag
     3001 cggactgtcg aggtcaagta ccgcgaccag ttctccgccg cgcacgatgg ggacgacgag
     3061 ttcgctagcc gaggctgaat cgcaggcgat atgcccttcg aacgcattca catcgtcgac
     3121 tcgctgaacg cttctcgttg cggccgccgt gccgcacacg ccgcgaccga agggaatgcg
     3181 gatgcacgca ggccgtccct ggaatgggcc gaggacgagt tctccgccga tgttccggta
     3241 gaagcccgcc cagttaaggt tcggcaaggt ttcccagatg agtgccgcag cgttcgccat
     3301 gttggcaatt gggtcgggtt cgccggcaat gagcccggtc agcgccgagg aaagatcccg
     3361 gtacatgctc gctgggtctg cagcggcaat cttgaagtcg tacatcagtc gaacgagacc
     3421 tttccgcgcg cttgcttgac ggcactgcgc tgccgtttct tctcgacgcg ctcagccttg
     3481 gcggccctcg ttggtcgcgt cgccttgcgc tttgccctca cgatatgggc agcggcgatc
     3541 atttctgcca cccgccgccg cgcatctgcc cggttcgcct cctgggtacg atatcgccgt
     3601 gccgtaacga ggagttcccc gctgcttgta atgcggcttc cccctagttc cttcagtcgc
     3661 tgatagacgt gcggctcaag tccaagcttg aagagatcga cgcgaagctg caccgccgtc
     3721 gcgaccttgt tgacgttctg gccgccagga ccggtcgcgg caaggaagct ctcggtcagt
     3781 gcgtcctcat ttatgatgac atcgtcaggc cgcatgacgc catgcatcaa agtaatccgg
     3841 cagtggcgcc gccacgtcga tcgctgcttt tcccggtcgt ggcacgatga gccgtgatgc
     3901 atggagcagc atcgggccgc cgggcacgcc gtaaacgcga tcgcccacaa tgccacgtcc
     3961 gaacgcctca cgcgcgtgtg ctcgaatctg atgcgtgcgg cccgtgagcg gtcgaaactc
     4021 gacgagcgta cggccgtcgc tgacttgaag acgtcgccag agcgttgctg cctcggatcc
     4081 ctctccgtcg gcaaccattc gccagcccgc ttccggactc gacctctttg caagcgggat
     4141 ctcgatcatt ccctcctggt cacgaacctc ggccgcgacg acggcaagat aatatttttc
     4201 aaccattcgc gtttcgaacg cgagctggaa ttgcgcacga gccttcgcgt tccgagcaaa
     4261 gagcaggcaa ccgcttgtgt cagtgtcgag gcgatgcatt gccgtcggtg gtctcttgaa
     4321 gccgcatttc agctcctcga tccgtccggc aatggactca ccaccccggc ggggccggtc
     4381 gactggaagt cccgcaggtt tgtcgagcac gatcgcttcg ccatcgatga agagaatatt
     4441 gtcggagagg gacatgcggt cttagacctc ccattcgatg gcaagtcgag catgatcaaa
     4501 cggcaaagaa ggacagccag caagccgtcg aaccgctcgc ctgtggacga acttgtgact
     4561 cctttgcaac gaatccaagg aatccagcgc gttacacaat attaaccttt tcccttcaga
     4621 tctcgaatgg ttaatggatg cttcaaggcc gttaagggga cttaacacct tcggctgggg
     4681 atggggggac cgcaaatgcg cgtgttgttg atcgaggacg agccgaccac ggccaagagc
     4741 atcgagctga tgctcggaac ggaaggcttt aacgtctata cgaccgatct cggggaagaa
     4801 ggcctcgatc tcggcaagct ctacgactac gacatcattc ttctcgacct gaacctcccc
     4861 gacatgcacg gctatgacgt gctgaagaag ctcaggaccg ccaaagtctc cactcccgtc
     4921 ctcatcctat ccggtatcgg cgagatggac tcgaaggttc gcgcactggg ctttggcgcc
     4981 gacgattatg tcaccaagcc ttttcaccga gacgagctcg tcgcccgcat tcatgcgatc
     5041 gtgcgccgct cgaagggtca ttcacagtcg gttatcagga ccggcaagct cgcggtgaac
     5101 ctcgatgcga agacggtcga agtcgacggt gcgagagtcc accttaccgg caaggaatat
     5161 gcgatgctcg agctcctgtc gctgcgcaag ggcacgacgc tcacgaagga gatgttcctc
     5221 aaccatctct acggcggcat ggacgagcca gagttgaaaa tcattgacgt tttcatctgc
     5281 aagctgcgca agaagctgag ccttgcctgc ggcggcgcaa attatatcga gaccgtatgg
     5341 ggtcgcggct atgtgctgcg cgatgcggac gagaatgagg aaaacgaacc gcaggttgcg
     5401 gtcgcctgat ctttgccaac aggggcaacg gggggaaagg cggggccgaa aggctccgcc
     5461 ttttcttcat gcatcgatta gcagtcgccg ccgctcacgt cgtgttggca gattgatcga
     5521 tcgagatccg tcggcgtccg actcggcgcc atccatccgc cgccagccat cgcgcccaag
     5581 ccgctcgagt ggcttgaaac tggttttgta ggccatgcgc gtcgatccct ccacccaata
     5641 gccgagatag acgtaaggaa ggcccgcgcg agcagcacga atgatgtgat cgagaatgat
     5701 gaaggtgcct aggccctttc tcgagttggg accgacgtcg aagaagctgt agatcatcga
     5761 cagcccgtcg ctctgttgat cgctcaggca ggcgccgacc agcttgccgg ggcggccgtc
     5821 aaccgagggt tcgcgatact cgatgatata ggtcctaaca ggcgtctgct cgaccatgtc
     5881 ggcaaagtcg ctctcgtcca tctcggccat gccgccgcct gggtggcgaa cggacagata
     5941 gcggcgaagc agctgatatt gttcgtcggt cgtccacggc ttgcaggcac tgacctccaa
     6001 gtctgcatgc cgccggagca gctttcgctg ggtcgccgtt ggctggaatt cggccgaaag
     6061 cacacgaacc gagatgcacg ccgagcagtc gatgcaactt ggccgatagg cgaccgactg
     6121 gctgcgacga aatccgatgc gaccgagcgc ttcgttgagt tcgctcgcat ggcggccact
     6181 gagttccgta aaaaccttcc gctccacctt gcccggaaga tacgggcacg ggctcgggtt
     6241 cgttacgaag aatttgggaa agcggaacgg tgcgctcacc ccgcgacctc acttcaattg
     6301 ttacggttgt ctttatgcgg ctggtaaacg tcgaaggaaa gagtttggac gcgtctattt
     6361 cgacacaaaa tcggccatgt cccgctgaga gacaggattt ttagtcgagt gaggcgcgtt
     6421 cgacgcggaa cccggcagct tcgagacgag caacaacatc gtcgatcgac cgaggatcgc
     6481 gggcctcgca ttcaacctcg atcatcgtgt ccttggccgg aaggcgcgtg aagatgcgac
     6541 tgtggttgat ctcgatgacg ttgactccgg cttcgtagac tttcgccgtg atcgccgcga
     6601 gcgcaccagg ctggtcatgg gcggcaacat gaagacgggc aatgcgaccc tggcggacaa
     6661 gatcgcggac gagcacattc gcgagaaggt gcgtatcgat gttcccgcca caaaggagcg
     6721 tcgcgacttt tttcccagcg aatcgatccc ggttcgcgag aatagcggct aaacccgcgg
     6781 cccctgcccc ctcgaccacg gttttctcaa tgccgacaag catcgcgacg gcgcgttcga
     6841 ggtcgcgctc ggcaacgagt agcacatcat cggcaagttc gccgaggatg cgtgacgtaa
     6901 gctcacccgg ctgcttgacc gcgatacctt ccgcaagcgt gtcgccgccg agcggcatat
     6961 ggcacttctc gatggcagat ttcatcgaag ggtagagctc agcttcgacg ccgatgagtt
     7021 cgatgtccgg cttgactgcg cgtgcggcga tcgcgatccc cgacatcagg cctccaccgc
     7081 cgatcggaac gacgatcgtg tctagctcgg gagcatcctc aagcatctcg agcccgactg
     7141 tcccggcgcc cgcaataatc atcgggtcat cgaaggcgtg aacaaagacg aagccattct
     7201 cgagggcgag ttcacgcgct ttcgcgaacg catcatcgac gatacgaccg aacagtacga
     7261 cctgcgcacc gtgaccggca gtttgcgtaa ccttcaccgt cggcgttgac tctggcatga
     7321 cgatcgtcgc tggaatgccg agccgccgcg catgataggc cacggcttgc gcgtggtttc
     7381 cagccgaagc cgcgatcaca ccgcgggctc gctcttcggg cgtcagctga agcagcttgt
     7441 tgagcgcgcc gcgctccttg tacgccgcgg tgaactgaag attctcgaac ttcagccaga
     7501 tttccgcacc ggtgatttcc gaaaaggtcc ggctgatcag catcggagtg cggatgacgg
     7561 ctccttggat gcgttgctgc gcagcgcgga cgtcgtcgat cgtcggcggc tgcaatgaag
     7621 gcgtctgaag catgcgaggt ttcgcctagc gcttcacgca agagcgaaca atgctaagcg
     7681 tcgtctatga aaaagacagt gcttgcaatg atcatgacgc tcctggcgtc gccagcctgg
     7741 cccgacacat tgatcgaaca tgccaatggg atcgagatcg acgccgaggg gcacctcagc
     7801 cggttcactg gaattctcat tacggacgaa gggaaagtgg cacgcctgat cggtccgggc
     7861 gaagctttac caggcgcggg cgtgaaaata gatgcccacg gtcagacggt ccttcccgga
     7921 atgatcgatg cgcacggcca cgtcatggag cttggccgag acgcattgca gctcgacgtg
     7981 gtgggcgtcc ggtcgctcgg cgaacttcag cagcggcttc gttcctacgc ggcggcacat
     8041 cctgattaca aatggctcct cggggcaggg tggaatcagg aattatggcc cgacaagaga
     8101 ttcccgaccg cggctgacct cgatgcaatc gttccggacc ggcccgtcgt gctcgagcgc
     8161 gtcgacgggc atgctttggt cgcgaatagt gccgcaatgc gtgccgcggg tgttacttcg
     8221 gcgaccaccg cgccagcggg cggtgagatc atcaatggcg tgttcgttga taatgcaaag
     8281 gtgctcatca accgcgcggt accgctgccg accagggccg acgaggaccg gcagttcgcc
     8341 aaagcacagg agattctgct cggatttgga gtgacgggag tcgggtcgat gagcacgtcg
     8401 ctcgacgatt ggaacacgtt ccgccgttcc ggcgaggcag ggtccctgcg ggtgcgactg
     8461 atggtctatc tcctcggact ggatccgctt aaagcaattc cacatccgac ttcctggctt
     8521 tatggcgatc acctgcgcgc cgtcggcgtc aagtttttcg ccgatggtgc actcggttcg
     8581 cgcggcgcgt ggctgaagca gccctattcg gatcagccag acacaacggg caatcggctg
     8641 cactcgaatg cggaacttcg atcaatcgag aatgcggcag ccgcggcggg tttccagatc
     8701 gcaacgcatg caattggtga tgctgccaat gcccaggtga tcggtaatta cgaatggctc
     8761 aatggcaaat acggcgccaa tcggcgctgg cggatcgaac atgcgcagat cgtcgactgc
     8821 tcggacctgc cgaggatagg ccgcggccac atgatcgcct cgatgcagcc cacgcaccag
     8881 acaagtgatc gcctgatggc ggagaagagg cttggtcttg gccggctgaa gtgcgcttat
     8941 gcctggcagt cgatgcttcg caccggtgcc aagcttgcgt tcggcaccga tttcccggtg
     9001 gagtcgccga acccttttcc cggcctcgca gcaggaataa gcaggcagga catgaatggg
     9061 gagccgcccg gcggctggtt cccgagcgaa cggctgagtt tagggcaggc gttggccgcc
     9121 tatacgcgcg gtgccgccta cgccggattt gccgaacaca gaattggcgg actggacccg
     9181 ggccaatggg ccgattttat aatcgtcgat cgtgacccga ccaaggttga tcctcagcag
     9241 ctcgcacgaa cgaaggtcct cgagacatgg gttggcggca aaaaggtttg gggacgggaa
     9301 gtgactagcg actcgcaagc tttgcacggt caatgagcat cgctggggtc agtacctggg
     9361 gaagttcttc tatgtgccca tcaggagcat accacagata gtagggaaca ccggcgcgac
     9421 cccggctttc gagaaagcgg gtgatcgccg ggtcgccgtt cgtccagtcg ccgacaagga
     9481 cgcggacgtg cgcccttttg aatgcgtcgg tcacctcgct tcggtcgatt gccgcggttt
     9541 cgttgacctt gcaggtcagg caccaatcgg ccgtgaaata gacaaatacg ggtcgatgtt
     9601 ggtgcagcgc atcggctagt cgtgcttcgc tccacgacgc atctgatcca tggcgatgac
     9661 taacggtccg cgggctcaca atgagcagca agaggccgca gagacaaagg gcggcgggaa
     9721 gcgcccaggc tccgctttga ccgtggcgct gccgtttccc ggcgaacagc agcaaagcca
     9781 gcagggcggc agccgcgcaa agtcctagca gaaattcctc tgcgccagcg agcctataaa
     9841 gaagccacat cgctgcaaca gcacttgccg ccatcgggat cgcgaggaaa tgcttgagcc
     9901 tgtccatcca acgaccgggc ttgggcattc tcgtgcgaag tggcgggatg aacgcgacga
     9961 gcgcgaatgg aagcgcaagg cctaagccca aggccgcaaa gacggcaagg gacgcaatcg
    10021 ctggaagcag caaggccgtt ccaagcgccg ctccgaggaa tggcccggcg caaggcgtg
//
LOCUS       DASRBJ010000127         3452 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_522879,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000127 DASRBJ010000000
VERSION     DASRBJ010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3452
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_522879"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1395)
                     /locus_tag="VE968_03685"
     CDS             complement(<1..1395)
                     /locus_tag="VE968_03685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HZU50957.1"
                     /translation="MPSFARELEQTLHNALGEASRRRHEYATLEHLLVALIDDEHASK
                     VMTACGVNRDELRASVKQYLDNELGALVADSATDPTPTSGFQRVVQRAILHVQSSGRD
                     EVTGANVLVALFSERESYAVYFLQQQDMSRLDAVTYISHGVGKGESPQETRSPEGTEE
                     KNEKESAKKESALKQFTVDLNEKARQGKVDPLIGRMPEVDRTVQILCRRSKNNPLYVG
                     DPGVGKTAIAEGLARKIVEGDVPEVLKPAVIYALDMGALLAGTRYRGDFEERLKSVVA
                     ELEKMPHAILFIDEIHTVIGAGATSGGAMDASNLLKPALSSGAIRCIGSTTYKEFRNH
                     FEKDRALLRRFQKIDVNEPSIEDTIKIIAGLRSSFEGHHNVRYTPDAIKSAVELSARY
                     IHDRKLPDKAIDVIDEVGAMQMLVPPSRRKKVITPKEIEAVVATMARIPPKSVSADDK
                     EVLEHLEADLKRVVF"
     gene            complement(1543..1743)
                     /locus_tag="VE968_03690"
     CDS             complement(1543..1743)
                     /locus_tag="VE968_03690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1192 domain-containing protein"
                     /protein_id="HZU50958.1"
                     /translation="MDLDDLFPSKPGDPLVELSKQDLDPMSIEELNERIAALEVEITR
                     VRNHIRNAQNHRSAAEELFKKS"
     gene            1810..2781
                     /locus_tag="VE968_03695"
     CDS             1810..2781
                     /locus_tag="VE968_03695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase"
                     /protein_id="HZU50959.1"
                     /translation="MRAVVADGSGGLKLVDRPVPQPQPGEVLIKVTAAGVNRPDVLQR
                     RGMYPPPPGAPDILGLEIAGQVAATGSGSTMLLGQKVCALVAGGGYAEYCVAPTGTCL
                     PIPRTLTAVDAAALPETLFTVWINLFERGFAADGDTVLVHGGTSGIGTMAIALGNLFG
                     LKVIVTCGTDEKCATAEKLGAEAAINYSTKDFVEEVHRLTDRRGVDVVVDMVGGDYVP
                     RNLACLAEDGRHVSIAVQRGATAEIPIFDVMRRRLTLTGSTLRPRSVDFKTMVADEIA
                     RSVWPYVEGGRLRPLIDSVYPLSEAEQAHRRMESGDHMGKIVLEVRR"
     gene            2802..3419
                     /locus_tag="VE968_03700"
     CDS             2802..3419
                     /locus_tag="VE968_03700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HZU50960.1"
                     /translation="MQRLVLHEYSRSGNCYKVRLTAALVGKDLERREYDIMKGETRTP
                     EFLQSVNANGRIPVLEVNDRLIPESNAACYFLAENTHLVPTDPFDHADMLHWMFWEQY
                     NHEPNIATLRFWMRSLGPDKVGDLQRLQMPAKRQQGNAALKLMDDHLAGREWFVGYEP
                     SLADICLFAYTHVAGDAEFDLDRYPHVREWLARVQAHPRFVAMDA"
BASE COUNT          651 a         1013 c         1052 g          736 t
ORIGIN      
        1 gaaaaccacc cgtttgagat cagcctcgag atgctcgagc acctccttat catccgcact
       61 gacggatttt ggcgggattc gcgccatggt tgcgacgacc gcttcgattt ccttgggcgt
      121 aatcaccttc ttgcgacggc ttgggggtac cagcatttgc atggcgccga cctcgtcgat
      181 cacgtcgatt gccttgtcgg gcagcttgcg gtcgtggatg taccttgccg agagctcgac
      241 cgccgacttg attgcgtcgg gcgtgtagcg aacgttgtga tgcccttcga atgacgaccg
      301 caggcctgcg atgatcttga tcgtgtcttc gatcgagggt tcattgacgt caatcttctg
      361 aaaccggcgc agcagtgcgc ggtccttttc gaaatggttg cggaactcct tgtaggtggt
      421 cgagccgatg catcggatcg caccacttga aagtgctggc ttcaaaaggt ttgaagcatc
      481 cattgcgcca ccgctcgttg cgccggcgcc gattaccgtg tggatctcgt caatgaacaa
      541 gatcgcgtgt ggcatttttt caagctcggc aacgacggac ttcagacgct cttcgaaatc
      601 gccgcggtag cgggtacccg caagcagcgc tcccatatcg agcgcgtaga tcactgccgg
      661 cttaagaact tccgggacgt cgccctcgac gattttacgt gcaagtcctt ccgcaattgc
      721 cgttttcccg acgccaggat cgcccacgta aagaggattg ttctttgagc gacggcagag
      781 aatctgtacc gtgcgatcga cttccggcat tcggccgatg agtgggtcca ccttcccttg
      841 gcgcgccttc tcattgagat cgactgtaaa ctgcttgagc gcggattcct tctttgcgct
      901 ctccttttcg ttcttttcct cggtaccttc aggactgcgc gtctcctgcg ggctctcgcc
      961 cttcccgaca ccgtgactga tgtaggtcac cgcatcgagt cggctcatgt cctgctgctg
     1021 caggaagtaa acggcatagc tctcgcgttc ggaaaatagc gcgacgagca cgttcgcacc
     1081 cgtcacttcg tcgcgcccgg acgattgcac gtggagaatc gctcgttgaa cgacacgctg
     1141 aaagccgctg gttggggtag ggtccgtcgc actgtcggcg acgagagcgc cgagctcatt
     1201 gtcgagatac tgcttgacgg acgcgcgaag ctcatcgcgg ttaaccccgc aagcggtcat
     1261 caccttcgag gcatgttcgt catcaatcaa cgcgacgagc agatgttcaa gggtcgcata
     1321 ctcgtgccgg cgacggctgg cttcccccag cgcattgtgg agggtttgtt cgagttcgcg
     1381 agcaaaacta ggcatttagg ctgttactcc cgcaccccgc ggaaagcccg ggggctttga
     1441 ctggaatgtc atatggagga gcgcggcaat caagtgccgg ttcctttgtt ttcaacagaa
     1501 tatcgctttg cgagcggctt ggcggctgaa tggccgcgag cgtcatgact tcttgaacag
     1561 ctcttcggcc gcggagcggt ggttctgcgc gttccggatg tggttcctca cccgagtgat
     1621 ttcaacttcg agcgcggcaa tgcgctcgtt gagctcctcg atggacatcg ggtcgaggtc
     1681 ctgcttgctg agctcgacaa gtgggtcgcc gggcttgctt gggaataggt cgtcgagatc
     1741 cactggcgaa tcgttgaccg atacaagcgc caagtcaata agcctcgcgt gccagacata
     1801 ccctcgcaga tgcgcgccgt cgttgcggac ggctcgggcg gactgaagct cgtcgaccgg
     1861 ccggtgccgc agccgcaacc gggagaagtg ctgataaagg tcactgcggc cggcgttaac
     1921 cggcccgacg ttcttcagcg ccgcggcatg tatccgccgc cgccaggagc acccgacatc
     1981 ctcggtctcg agatcgccgg gcaggtcgcg gcaaccggtt cgggctcgac catgctgttg
     2041 gggcagaagg tctgcgccct tgtcgcgggc ggcggctatg ccgaatattg cgtcgctccg
     2101 acgggtacct gcctgccgat cccgcgtact ctgacggccg tcgacgccgc cgccttgccc
     2161 gaaacattgt tcacggtttg gatcaatctc ttcgagagag gctttgctgc tgatggcgac
     2221 accgtgctgg tccacggcgg caccagtgga attggcacca tggcaattgc gctcgggaac
     2281 ctgttcggcc tcaaggtcat cgtgacctgc ggcaccgacg aaaaatgcgc cacggcagag
     2341 aaactcggtg ctgaagcggc gatcaactat tcgacgaagg acttcgtcga ggaagtccac
     2401 cgtcttaccg accgccgcgg cgttgacgtg gtagtcgaca tggtgggcgg cgattatgtg
     2461 cctcgcaatc ttgcgtgcct cgccgaggac ggacgccacg tgtcgatcgc cgtgcagcgt
     2521 ggcgccaccg ccgaaatacc catatttgat gtgatgagac gccggctcac tctcacggga
     2581 tcaacgcttc ggccgcgttc cgtcgacttc aagacgatgg tcgcggacga gattgcaagg
     2641 agtgtctggc cgtacgtcga ggggggaagg ctaaggcctc tgatcgacag cgtctatccg
     2701 ctgagtgagg cggaacaggc ccatagacga atggaatcgg gcgatcacat gggcaagatc
     2761 gtgctggagg tgagacgcta gcaaggcggc gaggaggggt aatgcaaagg ctcgttctcc
     2821 acgaatattc ccgatccggg aactgctaca aggtgcggct caccgcggcg ctcgtcggca
     2881 aggacctcga gcggcgcgag tatgacatca tgaaaggcga aacccggacg ccagaatttc
     2941 ttcaatcggt gaacgcgaac ggccgcatcc cggtgctcga agtcaatgat cgcctgatcc
     3001 cggagagcaa tgcggcatgc tatttcctcg ccgaaaatac ccacctggtt ccgaccgatc
     3061 cattcgacca tgccgacatg ttacactgga tgttctggga gcagtataat catgagccca
     3121 acatcgcgac gctacgcttc tggatgcgtt cgctcgggcc agacaaggtt ggcgatctcc
     3181 agcgactcca gatgccggcc aagcgacagc aggggaatgc ggcgctcaaa ttgatggatg
     3241 atcatcttgc cggccgcgag tggttcgtcg gttatgagcc cagcctcgcg gacatctgcc
     3301 tgttcgccta tacgcacgtt gctggcgacg cggagtttga tctcgaccgc tacccgcatg
     3361 tgcgggagtg gctcgctcga gtgcaagccc atccgcggtt cgttgcgatg gacgcttaaa
     3421 gcgccttgcc cgaacagcgg caggtggcta ca
//
LOCUS       DASRBJ010000128         3314 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_523439,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000128 DASRBJ010000000
VERSION     DASRBJ010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3314
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_523439"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2531)
                     /locus_tag="VE968_03705"
     CDS             complement(<1..2531)
                     /locus_tag="VE968_03705"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HZU50961.1"
                     /translation="MSERLQDAFFKALFHSPIAGIAVVDLESLVVLDANDVMLQILGR
                     TREQLLNVREIGAEVTPPQYKELNARAIKQAKERGYSDPIFKHYRRPDGTLVPVRTVF
                     GRVAEYPDRLVVFASDVTADEKQREEAADREIRLDLALSAANQGVWDYNIETGEMIYS
                     ARAKEIYGLPTDQPVTFELIRDATHPEDLPNTHAQLLRAIDPAIRDRSSYEYRIIRPD
                     DTVCWAQAYGEAIFAGEPGDERAIRYIGTLVDITDRKQAEEALRQSEARYRNLISVSD
                     QVVYRHNADWSEMRQLYGGGFLADTDEPDPNWFDKYIHPDDQPNVRARIEEAIRTRTP
                     FEYEHRVIREDGTLGWTYSRSIPIFDAHGNIVEWFGAASDVSARKEAEESLRESEERL
                     RLAVDNAEIGFWDVQDGHGELTWPARTKAMFGISPDTPVTMEDFYSGLHPDDLQRVAE
                     AYAAAADPARRELYDVEYRTIGKEDGILRWVAAKGRGIFDGPGREARCVRVIGTAIDI
                     THRKRVEHALQDESRNLEILNSVGASIASELDLERVVQRVTDAAVELTGAQFGAFFYN
                     VEDETGERYTLYTLSGVERSAFEHFPMPRNTHVFGPTFRGEGVVRSDDITKDPRYGKN
                     PPYNGKPKGHLPVVSYLAVPVTSRSGDVIGGLFFGHADEAQFNERHERLVVGIAAQAA
                     IAIDNARLYHAAQQANESLERRVAEALAERKLLADIVETTDAFVQIADLNFNFLGINK
                     ASADEFERIFGIRPKVGDNMLDLLADKPEHRAAVKAVWSRALAGEEFTEIGEFGDSEL
                     DRRFYEMKYNSLRDEQGRLIGAYQFVYDVTERLRDQRRLAEAEEA"
     gene            complement(2819..>3314)
                     /locus_tag="VE968_03710"
     CDS             complement(2819..>3314)
                     /locus_tag="VE968_03710"
                     /inference="COORDINATES: protein motif:HMM:NF023352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3443 family protein"
                     /protein_id="HZU50962.1"
                     /translation="TVIFGIGTQPDNALTATNVLPLTNSSSQLGPGVLTVSFDGEQLT
                     ESFLDSGSDDYYFVDASLPACTQADYSPFYCPSAPSALSPTLIGTNGATASGAFTLYS
                     PLDVSNNATAAPGLGVNPTLITPPLPFADTFDFGIPFFFGRTVYVAIEGRSAGRMAGP
                     YFAF"
BASE COUNT          659 a          981 c          958 g          716 t
ORIGIN      
        1 aatgcttctt ccgcttcggc aagccgccgc tggtctcgca gccgttccgt cacgtcgtaa
       61 acgaactgat aggcgccgat cagccgaccc tgctcatcac gaagcgaatt gtacttcatc
      121 tcatagaacc gtcgatcaag ttcgctgtcg ccaaattcgc cgatttccgt aaattcctcc
      181 ccggcgagtg cgcgcgacca gacagcctta actgccgcgc ggtgttcggg cttatcggcg
      241 agaaggtcga gcatattgtc tccgaccttt gggcgaatgc cgaagatccg ctcgaactcg
      301 tcggccgagg ccttgttgat gccaaggaaa ttgaaattga ggtcggcgat ctgaacgaag
      361 gcgtcggtcg tttcgacgat gtcggcgaga agcttccttt cggccaacgc ctcggcgacc
      421 ctccgctcca agctctcgtt cgcctgctga gccgcgtggt acaagcgcgc attgtcgatt
      481 gcgattgccg cctgggcggc gatgccgacc accagacgct catgacgctc gttgaattgc
      541 gcctcgtcgg catggccgaa aaagaggcct ccaataacgt cgccgctgcg gctggttacc
      601 ggtaccgcaa gatagctcac gaccggaaga tggcccttcg gcttcccgtt ataaggcgga
      661 tttttgccgt agcgcggatc cttggtgatg tcgtcagacc gcacgacccc ctcgccgcga
      721 aacgttgggc cgaatacatg ggtattgcgt ggcatcggga agtgctcgaa tgcggatcgc
      781 tcgacgcccg agagggtata gagcgtgtaa cgctctcccg tctcatcttc gacattgtag
      841 aagaatgcgc cgaactgggc gccggtcagc tcgaccgcag catcggtgac ccgttgcacc
      901 acgcgttcga gatcgagctc gctcgcaatc gaggcgccga cgctgttcaa gatctcgagg
      961 ttacgacttt cgtcctgaag cgcatgttcg acgcgcttgc ggtgggtgat gtcgattgcg
     1021 gtccctatta cccgcacaca acgcgcttcc ctgccaggtc catcaaaaat cccgcggcct
     1081 ttcgcggcga cccatcgcag aattccgtct tccttgccga tcgttcggta ctctacgtca
     1141 taaagctcgc gccgtgctgg atcggcggcc gccgcgtaag cctcggcgac ccgctgcaag
     1201 tcatccggat gaaggccaga ataaaagtcc tccatcgtga cgggcgtatc gggtgagatc
     1261 ccaaacatcg ccttggttcg ggcaggccag gtgagctcgc cgtgaccgtc ctgaacgtcc
     1321 caaaagccga tctcagcatt gtcgacggcg agacgtagtc gctcctcgct ttcgcggagt
     1381 gactcttccg cttccttgcg cgcactaacg tcgctcgccg ctccgaacca ttcgacaata
     1441 tttccgtgcg cgtcgaatat cggaatcgat cgtgaatagg tccagccgag ggtgccgtct
     1501 tcgcgaatga cgcgatgttc atattcgaac ggtgtgcgag tacgaattgc ctcttcaatc
     1561 cgcgcgcgga cattcggctg gtcatcggga tgtatgtatt tgtcgaacca attcggatct
     1621 ggctcgtcgg tgtcggcgag gaacccgccc ccgtaaagct ggcgcatttc cgaccagtcc
     1681 gcgttatggc ggtacacaac ctgatcagaa acactaatga ggttgcgata gcgtgcttcg
     1741 ctttggcgaa gcgcctcttc cgcctgtttg cgatcggtga tgtcaaccaa cgtcccaatg
     1801 taccggatgg cacgctcatc gcccggctca ccagcgaata tcgcctcgcc ataagcctgt
     1861 gcccagcaga cggtgtcgtc gggacgaatg atgcgatact cgtagctcga gcgatcgcga
     1921 atagcgggat caatcgcgcg caggagctgc gcgtgcgtgt ttggcagatc ttccggatgg
     1981 gtagcgtcac ggatcagctc gaatgttacg ggttgatcgg tgggcaagcc gtagatttcc
     2041 ttcgctcgcg ccgagtagat catctctcct gtttcgatgt tgtagtccca aacaccctgg
     2101 tttgcggccg acagcgcgag atcaagacgg atctcccgat ctgctgcctc ttcgcgctgc
     2161 ttctcgtcgg ccgtgacgtc cgaagcaaag acgacgagcc ggtctggata ttccgctacc
     2221 cgcccaaaga cggtccgaac cggaaccaga gtgccatccg gtcgcctgta atgtttgaaa
     2281 atcgggtcgg aataacctct ttccttcgcc tgctttatag ctcttgcgtt gagctccttg
     2341 tactgcggtg gagtaacctc cgctccaatc tctcggacat tgagcagctg ttcgcgagtg
     2401 cgaccgagaa tctgaagcat tacatcgttc gcgtcgagaa cgacgaggct ctcgaggtcc
     2461 acgacggcga tgccggctat cggagagtgg aacagtgcct tgaagaacgc gtcctgcagt
     2521 cgctcgctca atgatatgcc tcgtgggact ccagttctaa atcaacgggt aggcgggggc
     2581 gccgatgacc gcaatggggt tccacgatcc gactcggcca gtgcgcatcg gcatgcgatc
     2641 tgcgcccttg tcgccgcgtt ttcataggcc tgtcgctcac tcgcaagctg agccgaagcc
     2701 aaactccagc cagttcaacc cgcgcctggt gtggccagga agccagcaag ctcacatgac
     2761 gccaatgccg tatggagtcg gcctcagcct atagcaattc gccggtccga tcggcttttc
     2821 agaacgcgaa atagggtccc gccatccgcc cggcggagcg cccctcgatt gctacataga
     2881 ctgtgcggcc gaagaagaac ggaataccga agtcaaaggt gtccgcgaac ggcaaggggg
     2941 gtgtgatgag cgttgggttg actcctagcc cgggcgcagc ggttgcattg ttcgagacgt
     3001 ccaagggact gtaaagtgtg aatgcgccac ttgccgtcgc cccgttcgtg ccaatcagcg
     3061 tcggtgagag ggcgcttggt gcgctcggac aatagaaagg actataatct gcttgcgtgc
     3121 aagcagggag cgatgcgtca acaaagtaat aatcgtcgct gccgctatcg agaaagctct
     3181 cggtcaactg ttcgccatcg aagctaacgg tgagtactcc tggaccaagt tggctcgaag
     3241 aattggtcag tggcaaaaca tttgttgctg ttaaggcatt gtcaggctgt gttccgatcc
     3301 cgaaaatcac cgtg
//
LOCUS       DASRBJ010000129         4177 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_220942,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000129 DASRBJ010000000
VERSION     DASRBJ010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4177
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220942"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1114
                     /locus_tag="VE968_03715"
     CDS             <1..1114
                     /locus_tag="VE968_03715"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HZU50963.1"
                     /translation="LVTGKALELVLRERIFIPLGMNRSRGAIIDSDRPYYAQGYEAAD
                     PSAAYLRGAALAPAPWVDVTAGAGCVASTADDMLAFLGALARAAQGKGAVGLTPLDAR
                     RMTQHAVPTDVAGMAYGNGLMHVGDQGREYLHHTGGMLSFSSSFHFDVASGVGAFASA
                     TLNAFADYRPRLLTRYAVDAMGDAMLGRSVSAPPALDVGLPDAGSYVGRYTGPSGSLE
                     IRLGSPLTIIAEGRSAPLLPVAADIFRSLHPLFRQYSIMFERSAGAVVLASWGPNSYV
                     REGTAASVPPGDRELAKLAGRYINDNPWFGAMPVVERGARLWIGTETPMTKIGDNLWR
                     VGREQWSPERASFADFIAGRPQTFVFSAVKFPRHEV"
     gene            1148..3388
                     /gene="purL"
                     /locus_tag="VE968_03720"
     CDS             1148..3388
                     /gene="purL"
                     /locus_tag="VE968_03720"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HZU50964.1"
                     /translation="MEVLDAPAISPSLVADHGLSPEEYSRIINALGREPNLVELGIFS
                     VMWSEHCSYKSSRVHLKKLPTSAPWVIQGPGENAGVIDIGDGDAAIFKMESHNHPSYI
                     EPYQGAATGVGGILRDVFTMGARPVANLNALRFGRPEHPKTRHLVAGVVAGIGGYGNC
                     VGVPTVGGEVNFDAAFDGNILVNAMTVGVAKKDKIFYSAAAGIGNPVVYVGSKTGRDG
                     IHGATMASTDFSQDSDEKRPTVQVGDPFTEKLLIEACLELMASDAIVAIQDMGAAGLT
                     SSSIEMASKGGVGIRLDMNKVPCREQAMTPYEMMLSESQERMLMVLKPGREAEAEAIF
                     RKWELDFAVIGEVTDTGRMELLWNGEIAADIPLGPLADDAPCYERPYIIPRPAPALND
                     VPESRDIIGDLLTLIGSPNLSSRRWIWEQYDQSVGGDTVQRPGGDAAVVRVHGTRKAL
                     AITTDVTPRYCYADPVEGGKQAVAEAYRNLSAVGAKPLAITNCLNFGNPQRPEIMGQF
                     VGCLEGMAEACRSLDFPIVSGNVSLYNETKNDDGTSRSILPTPAIGGVGLLKDYAKTA
                     TIAFKDEGETLILLGHSTGHIGQSLWLELCHGRREGLPPPVDLAVERRLGDVARELIA
                     AGQVTAMHDVSDGGALVAIAEMALAGGIGAEVKLPSARNPAAVLFGEDQGRMLLTTRW
                     PERVRGVANAAQLFAIEVGTTGGDAIVIRSSATGESHKVSLSALRAAHEGFFPKLMGS
                     ELSPEL"
     gene            complement(3392..3826)
                     /locus_tag="VE968_03725"
     CDS             complement(3392..3826)
                     /locus_tag="VE968_03725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004210730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HZU50965.1"
                     /translation="MTDGARDIVDWAYFEKSRTELGPGLIRILSYFKEDGTKSIAQIE
                     QAMRDENTTALVIPAHTLKGEARQLGAEPLAKIAELIETTARLCVETHRFPDELVPEV
                     VELRSLFEKTIELFDDATNPLVRRTPTGGFGRKVTNQGFGRI"
     gene            complement(3883..>4177)
                     /locus_tag="VE968_03730"
     CDS             complement(3883..>4177)
                     /locus_tag="VE968_03730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HZU50966.1"
                     /translation="DAWGRRVPTGELNRWFETAIETNPPPAPKGQRIKLRYITQVKSR
                     PPSFVVFGNRTDELPESYRRYLLNAMRRDLGLGPVPVRLEFRGRSNPFDAKRR"
BASE COUNT          829 a         1214 c         1282 g          852 t
ORIGIN      
        1 actagtgacg ggaaaagcgc tcgaacttgt tcttcgggag cgcattttca ttcctcttgg
       61 aatgaatcgg tcgcgaggag cgatcattga ctccgatcgg ccatattatg ctcaaggtta
      121 tgaagcagct gatccaagtg cagcctattt acgcggcgcg gcactagcgc cagcaccttg
      181 ggtcgacgta acggcgggcg cgggctgcgt cgcttccact gccgacgaca tgcttgcgtt
      241 cctcggtgct ttggcgaggg ccgcacaagg caagggcgcc gtcgggctca ctcctctgga
      301 cgcccgtcgc atgacgcagc acgcggttcc aaccgacgtg gcaggcatgg cctatggcaa
      361 cgggctgatg catgtcggcg accaaggacg cgagtatttg caccacactg gtgggatgct
      421 ctctttctca tcgtccttcc actttgacgt tgcgagcggc gttggggcgt ttgcaagcgc
      481 gacgctcaat gctttcgcgg attaccgacc tcggctcctc acgcgttacg cggttgatgc
      541 aatgggcgac gcaatgctcg ggcggtcggt gtccgctcca ccggcgcttg atgtcggatt
      601 gccggacgcg ggctcttacg tcggccgtta cacgggaccg tcgggttcgt tggaaatccg
      661 gctcggatca ccactgacga tcattgccga aggccgatca gcaccattgt tgccggtcgc
      721 agcagacatc ttccgctcgc ttcacccgct gtttcgacaa tatagcatca tgttcgagcg
      781 cagcgcgggg gcggtggtgc tcgcaagctg gggcccgaac tcttacgtgc gggaaggcac
      841 tgcggcatcg gtcccgccgg gcgatcgcga gctcgcgaag ctcgccgggc gctacatcaa
      901 cgacaatccc tggttcggcg ccatgcccgt tgtcgagcgt ggcgcaagat tgtggatcgg
      961 cactgaaact ccgatgacga agatcggcga caatctatgg cgggtgggtc gcgagcaatg
     1021 gtcaccggaa cgagcatcgt tcgcggactt catcgccggc cgcccacaga ctttcgtctt
     1081 ctcagcggtc aagttccctc gccacgaagt ctaggcttgc gccgggttga cggctaggag
     1141 cgccgccatg gaagtattgg acgctccagc catcagcccc agccttgttg ccgatcacgg
     1201 gctctcgccc gaagaatatt cgcggatcat caatgccctt ggccgcgagc ccaatctcgt
     1261 tgagctcgga atcttctcgg tcatgtggtc ggagcattgc agctacaaga gttcgcgcgt
     1321 ccatctgaag aagctcccaa cgtcggcgcc gtgggttatc caagggccgg gggaaaacgc
     1381 cggtgtgatc gacattggcg atggcgatgc cgcaatcttc aagatggaga gccacaacca
     1441 tccctcgtat attgaacctt atcagggggc tgcgacaggc gtcggcggca tcctgcgcga
     1501 tgttttcacg atgggcgctc gacccgtcgc caatctgaac gcgcttcggt ttggacgtcc
     1561 ggaacatcca aagacacgcc atcttgttgc cggggtggtt gccggcatcg gcggctatgg
     1621 aaattgcgtc ggcgttccaa cggttggcgg ggaagtaaat tttgatgccg ccttcgatgg
     1681 aaacatcctc gtgaacgcga tgacggtggg cgtcgcgaag aaggacaaga tcttctattc
     1741 agccgccgct ggcatcggca atccggttgt ctacgtcgga tcgaagactg gccgcgacgg
     1801 cattcatggc gcgacgatgg cgagcaccga cttttcgcag gacagcgatg agaaaagacc
     1861 aacggttcaa gtcggtgatc cgtttactga gaagctgctg atcgaggcct gcctcgaact
     1921 gatggcttcc gatgcgattg tcgcgatcca ggacatgggc gctgccggtc tcacctcatc
     1981 cagcatcgag atggcgagca agggcggagt cggaattcgg ctcgacatga acaaggtgcc
     2041 gtgccgcgaa caggcgatga ctccttacga gatgatgctt tccgaaagcc aggagcgaat
     2101 gctcatggtc ctgaagcccg gtcgcgaagc ggaagcggaa gcgatcttcc gaaaatggga
     2161 gctcgacttc gccgttatcg gcgaggtcac ggacaccgga cgaatggagc tattgtggaa
     2221 tggcgaaatc gccgcggaca ttccgcttgg tccactcgcc gatgacgcgc cctgctacga
     2281 acgaccctac attattccaa gaccagcgcc cgctctcaac gacgtcccgg aaagccggga
     2341 tattatcggc gatctcctca cgctcatcgg atctccgaat ctctcgtccc gccggtggat
     2401 ctgggaacaa tatgatcagt ccgtcggcgg tgataccgtg cagcggcccg gcggtgatgc
     2461 ggccgttgtt cgagtccacg ggacgagaaa agcacttgca atcacgaccg acgtgacgcc
     2521 gcgctattgc tatgccgacc cggttgaagg cggcaagcaa gcggtcgcgg aagcgtaccg
     2581 caacctgagc gccgtcggtg caaagccact tgcaatcacc aactgcctga acttcggaaa
     2641 cccccaacgg cccgagatca tgggccagtt cgtcggctgc ctcgagggca tggcggaagc
     2701 ttgccggtcg ctcgattttc cgatcgtgag cggcaatgtc tcactctaca atgaaacgaa
     2761 gaatgatgac ggcaccagtc gttcgattct gccgacgccg gcgatcggcg gtgtaggctt
     2821 gctcaaagat tatgcaaaaa cggcgacgat tgcgttcaag gacgagggag agactctcat
     2881 tcttcttgga cattcgaccg gccatatagg ccagtccttg tggctcgaat tgtgccatgg
     2941 ccgtcgtgag gggttaccgc cacccgtcga ccttgccgtc gagcggcgac ttggcgacgt
     3001 cgcgcgcgaa ttgatcgccg cgggccaggt tacggcaatg catgatgtaa gcgacggcgg
     3061 agccttggtc gcaatcgccg agatggcact tgccggcggg attggcgccg aagtgaaact
     3121 gccaagcgca cgcaacccgg cggccgtgtt gttcggcgaa gatcaaggcc ggatgttgct
     3181 aacgacgcgg tggcccgagc gcgttcgcgg cgtcgccaat gccgcgcagt tatttgcaat
     3241 cgaggtcggt accacggggg gcgacgcgat tgtgatccgt tcgagcgcca ccggcgagtc
     3301 gcacaaggta agcctctccg ccttaagagc ggcgcacgag gggtttttcc caaaactgat
     3361 gggaagcgag ctcagccccg aactctagaa ttcagattcg gccgaaacct tggtttgtca
     3421 cctttcggcc gaaaccgccg gttggagttc gtcgaaccag cgggttggtc gcgtcgtcga
     3481 atagctcgat cgttttttcg aagagcgacc gaagttcgac gacctccggc acaagttcgt
     3541 ccggaaatcg atgggtttcg acgcataggc gcgcggttgt ctcgatgagc tccgctattt
     3601 tcgcgagcgg ctcggcacca agctggcgtg cctcaccctt caatgtatgc gccgggataa
     3661 cgagcgcggt cgtgttctcg tctcgcatcg cctgctcgat ctgagcaatc gacttagtcc
     3721 catcttcttt gaagtagctt agaatgcgga tcaacccagg accaagctcg gtccggcttt
     3781 tctcgaaata agcccaatcg acgatatccc gagctccgtc ggtcaaactt ccgctcctga
     3841 aacccaatga gagcgagata ggtttaaagg gtaaaatttg ccttagcggc gcttggcatc
     3901 gaaggggttg cttcgacctc gaaactcgag acggacgggc accggaccaa gtccaagatc
     3961 gcggcgcatc gcattaagaa ggtagcgccg ataactttct ggaagctcgt cggtgcggtt
     4021 gccaaagacg acgaaacttg gcggcctgct cttcacctgc gttatatagc gaagcttgat
     4081 cctttgtccc ttgggcgcgg gagggggatt ggtctcgatg gccgtctcga accatctatt
     4141 gagctcgccc gtcggaacgc gtctgcccca agcatcg
//
LOCUS       DASRBJ010000130         3152 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_523821,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000130 DASRBJ010000000
VERSION     DASRBJ010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3152
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_523821"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..279
                     /locus_tag="VE968_03735"
                     /pseudo
     CDS             1..279
                     /locus_tag="VE968_03735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012481474.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
     gene            complement(403..1833)
                     /locus_tag="VE968_03740"
     CDS             complement(403..1833)
                     /locus_tag="VE968_03740"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HZU50967.1"
                     /translation="MEFPWEKWVVFLHPDQRELVTRSFAGPARIAGSAGTGKTIVALH
                     RAVHLARTNAAARVVLTTFSDPLANALKTRLSYLTANEPTLAERIKTQSITALGRDLY
                     KALFGAPIVASPELIRSLIEEEAGRVAGHRFSPHFLYGEWTDVVDAWQLKTWEAYRDV
                     SRLGRKTRIGGKQRGILWSIFERVRRRLDEHRAITWSDVFGRLADHFAHSAQRPFDHA
                     VVDEAQDLGVAEARFLGVVAAARPDGLFFAGDLGQRIFQPPFSWKSLGIDVRGRSFTL
                     RVNYRTSHQIRSHADRLLPHVVSDVDGNSESRRGTVSIFSGPMPEVRVFDAPADEQTA
                     VGAWIADRIKEGCQPHEIGVFVRSPKQLERARAALKLAQATAIELTEEFALQPGKVAI
                     CTMHVAKGLEFRAVAVMACDDDVVPLQERIESVADDAGLQEIYDTERHLLYVACTRAR
                     DRLLVTGVLPASEFLDDFMGKDSARR"
     gene            complement(1773..2306)
                     /locus_tag="VE968_03745"
     CDS             complement(1773..2306)
                     /locus_tag="VE968_03745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50968.1"
                     /translation="MIVHRTQSSLLLVYVDHHDAAYKWAERRKIERHPTTGAMQLVEI
                     RERVEEIEIRKEKPATATGPAPKPALFAHLRTAELMGFGVPEEWVDDVRRVNEDDLFD
                     VLVHLPQEAQEALLGLAVGEKPTKPQPAPVEADPFAHPDAKRRFLVLTSIEELQRAWN
                     FLGRSGLSSCIPTSANW"
     gene            complement(2467..2862)
                     /locus_tag="VE968_03750"
     CDS             complement(2467..2862)
                     /locus_tag="VE968_03750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50969.1"
                     /translation="MVRQVNERRLRKGIEPAIREAGYEPLRIDRKEHLNKIDDEIIAE
                     IRRSRFLVADFTHGDTGARGGVYYEAGFAHGLNIPVIFTCRADAIDKVHFDTRQYNHI
                     TWATPDELKERLAKRITATLGDGSLKKAT"
BASE COUNT          618 a          967 c          949 g          618 t
ORIGIN      
        1 gtaatgacca ataacggatc ttgctacagg tctgccgctt tccgcagagc ctgcaagcgg
       61 ctcgggctca agcatatcta taccaagcct tacacgccca aaactaacgg caaggccgaa
      121 cgcttcattc agacaagcct ccgcgagtgg gcatacgcgc aagcctttcc aaactcacgt
      181 gagcgaaaag ccgagctccc aatctggctc catcgatata actggcatag gcctcatacc
      241 ggcattgatg ataaaacccc catcagtcgg ctcggtctga ccgagtacaa cgtcctgagg
      301 ttccacatgc gcgcggtggc gccttcgcgc agcccttcca gggccatcaa ggtggcacca
      361 gcttgctcac gacgccccac gatgaggcgt gggccgaata ggttatcggc gcgccgagtc
      421 cttccccatg aaatcatcga gaaactctga tgccggcagg accccggtca ccaacaaccg
      481 atcgcgcgca cgggtgcacg caacatagag aagatgccgt tcggtgtcgt agatttcttg
      541 gaggcccgca tcgtcggcaa ccgactctat ccgctcctgc aagggaacga catcgtcatc
      601 gcatgccatg acggcgacgg cgcggaactc cagccccttg gccacgtgca tggtgcagat
      661 cgcaaccttg cccggctgta gtgcgaactc ttccgtcaat tcgatcgcgg tggcttgcgc
      721 aagcttgagc gctgctcttg cccgctccaa ctgcttcggc gaacgcacga acacgccgat
      781 ctcgtgaggt tgacagccct ccttgatccg atcggcgatc cacgcgccga ccgctgtctg
      841 ctcgtccgcg ggtgcatcga agacccgcac ttccggcatc ggtccgctga aaatcgaaac
      901 cgtcccgcgt cggctttcgc tgttgccgtc cacatcggaa accacatgcg gcaacaagcg
      961 gtcggcatgg gaccgaatct gatgcgaagt gcgatagttg acgcgcaacg tgaacgagcg
     1021 accgcgcacg tcgatgccga gcgatttcca ggagaacggt ggctgaaaaa ttcgctgccc
     1081 aagatcgccg gcaaagaaca agccgtcggg gcgagcggcc gcgacaacgc caaggaaccg
     1141 cgcctccgca acaccgaggt cctgggcttc gtccaccacc gcatgatcga acgggcgttg
     1201 cgcagaatgt gcgaaatggt cggcaagccg accgaacacg tccgaccacg tgatggcgcg
     1261 atgttcgtcg agccgcctgc gcacgcgctc gaagatcgac caaaggatcc cgcgctgctt
     1321 gccgccgatg cgcgtcttgc ggccaaggcg cgacacgtcg cgataggcct cccatgtctt
     1381 gagctgccat gcgtcgacga catcggtcca ttcgccgtaa agaaagtgtg gcgagaacct
     1441 gtgaccggcc acccggcccg cctcctcctc gatgagggag cggatcagct ccggcgacgc
     1501 gacgatcggc gcgccgaaca gcgccttata gaggtcgcgg ccaagcgccg tgatcgactg
     1561 ggttttgatc cgctccgcaa gcgtgggctc gttggccgtg agataggaca gcctggtctt
     1621 gagggcattc gcaaggggat cggagaacgt ggtcagcacg acgcgcgctg ccgcattcgt
     1681 ccgcgccaaa tggacggcgc gatggagcgc aacgatggtc ttgccggttc cggcggatcc
     1741 ggcgatccgc gcggggccgg cgaagctgcg ggtcaccagt tcgcgctggt cgggatgcag
     1801 gaagacaacc cacttctccc aaggaaattc caagcccgct gaagctcctc gatgctggtt
     1861 agcacaagga agcgccgctt cgcgtcggga tgggcaaagg gatcggcttc gaccggggcc
     1921 ggctgcggct tcgtcggctt ttcgcccacc gcgagtccca gcaatgcctc ctgggcttct
     1981 tgcggcaggt gaaccagaac gtcgaacaga tcgtcttcat tcacccggcg aacgtcatcg
     2041 acccattcct ccgggacgcc gaaacccatg agctccgccg tgcgaaggtg cgcgaacagc
     2101 gccggcttcg gcgcggggcc ggtcgccgtc gcgggttttt ccttgcggat ttcgatctcc
     2161 tcgacccgtt cgcggatttc gacgagctgc atggcgccgg tggtcggatg ccgctcgatc
     2221 ttgcgccgct cggcccattt gtaggcggcg tcgtgatgat cgacatagac caagagcagg
     2281 ctcgattgcg tgcggtggac gatcaagcgg ctgtcggcgt tgacgcggac ggaccagaaa
     2341 tgcggatcct tcgcgcggtc gagcttgtgg aacgagaggc cgggcgcgga agggttgagt
     2401 tgcaggtcgc gccgtcaacc gcgcaaggct gtcggtgaag gtatcggcga tgcggaattc
     2461 catcgatcac gtcgcctttt tcaatgaccc gtcaccgagt gttgctgtga tgcgtttggc
     2521 gagacgttct ttcagttcgt ctggagttgc ccaggtaatg tgattgtatt ggcgcgtgtc
     2581 gaaatgcacc ttatcaatgg cgtcagcccg gcaggtgaag atcacgggta tgttgagtcc
     2641 atgagcgaag ccggcctcgt agtagacgcc gccacgggcg ccggtgtcgc cgtgcgtaaa
     2701 atcggcgacg aggaaacgag atcgcctaat ctcagcaatg atctcatcgt caatcttgtt
     2761 gagatgctcc tttcggtcga tgcgcagcgg ttcgtaacca gcttcccgaa tggctggctc
     2821 gatgcctttt cgtaggcgtc tttcattgac ttgtcgaacc acatggcgac gaaggcttgc
     2881 tttgatccag aattgattcc gtcaagttca gcaagccgag catagccagg cggcctgagc
     2941 atcaattcgt gaacggtatt tttagatgcg cccgcccgtt ccgtgattcg gtgctcgatc
     3001 cagccttttt cccgacaata ttcagcgagc gtgatcactt ctgtcaattt ccgagacgca
     3061 gtccaagcca gaagttcgtt cgcggtttct gctgccttgg tgttgtccag gacgtagaac
     3121 tttacgactt tacccaacag gtcgctcttg gc
//
LOCUS       DASRBJ010000131         3542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_678959,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000131 DASRBJ010000000
VERSION     DASRBJ010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3542
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_678959"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(124..759)
                     /locus_tag="VE968_03755"
     CDS             complement(124..759)
                     /locus_tag="VE968_03755"
                     /inference="COORDINATES: protein motif:HMM:NF017833.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolysaccharide biosynthesis protein"
                     /protein_id="HZU50970.1"
                     /translation="MDSHRTSPAEHPVPLSERLVQIIAETGPDRLSFTELAAQLHGRA
                     WGGLLFIFAAINMLPLPPGTSAFFAIPILLVAGQMVFGRASPWFPARLDRRGVTKNEL
                     QKLVSKIGWLEARVERLFKPRLPQFTGTTAARLIGIVCFLLALVAAIPIPLFHVAPAT
                     AIVLFGLALIYRDGALVIAAAIAAILSILFDGLIVGSGFVALKYAAAWLKP"
     gene            complement(774..1775)
                     /gene="trpS"
                     /locus_tag="VE968_03760"
     CDS             complement(774..1775)
                     /gene="trpS"
                     /locus_tag="VE968_03760"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016745006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HZU50971.1"
                     /translation="MTDVRVVSGIQPTGGLHLGNLLGAILRWVRMQNEAECLYFLADL
                     HSLSEYMDPAERRGSIREMAAALIASGIDPAKSILFAQSAVPAHSELCWILNGTARMG
                     WLNRMTQWKDKAGKNREGASVALFDYPVLQAADILLYRATHVPVGEDQKQHIELTRDI
                     ALKFNGDFDRDVFVVPEPFIGGGTAARVMSLRDGQAKMSKSDPSDMSRINLTDSNEDI
                     AQKIRKAKTDPEPLPDDPDALEGRPEAKNLVGIYEAVTGETMEAVLGRFSGQGFGRFK
                     PALTDVLVSLIAPIRERLEDLRRHPDELDRILAAGAASAAQIGLPVLADAKSAVGLI"
     gene            complement(1772..3361)
                     /gene="murJ"
                     /locus_tag="VE968_03765"
     CDS             complement(1772..3361)
                     /gene="murJ"
                     /locus_tag="VE968_03765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HZU50972.1"
                     /translation="MNLARSLGSVGGLTLASRILALVRDSLQARYVGANFASDAFLVA
                     FRLPNMFRAFFAEGAFSSAFIPMFNRKLAEANGERGPAFDFAERALSVLFAFLALMTV
                     VMLIAAWPLTAILSGGFHKQHPTHEQFAFAVELGRITIPYLMLICLASLLGGILNSLE
                     KFWVNAAAPILLNIAMVGGLFAFHGTPTQSARVQALAVPVGGILQLAWLFIACRAAGV
                     SLRPRLPRIDADVKRLMELILPAAIGAGAVQVNLVVSTALSGYLLGEGSISYIYYADR
                     VNQLPLGMIGIGLGTILLPTISRLLSAGEDKKAMDTQNRGMELALFLTLPAMVALIVA
                     AGPIVRGLFQYGHFSAADTTKCSWALAGFSIGLPSYVLVKVLTPGYYARHDTKTPVRY
                     AVQSVGVNLLGNLILIPVLGQFGFGHVGPPLATALSSTANVWFLYATLSKRGYFVPDA
                     RLKRRIPRLAVAALLMGVAIFGFDQLLDPWLKARIWERYMALVALVGAGVAVYGIACF
                     LTGAFVLEDLKILVRRQARQA"
     gene            complement(3383..3535)
                     /locus_tag="VE968_03770"
     CDS             complement(3383..3535)
                     /locus_tag="VE968_03770"
                     /inference="COORDINATES: protein motif:HMM:NF014599.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0051262 - protein tetramerization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HZU50973.1"
                     /translation="MSEAVSSTGFPPLMLDPIDFASAYMAQLEAAQQQGSLTGGDGGS
                     GPLPLA"
BASE COUNT          757 a         1040 c         1131 g          614 t
ORIGIN      
        1 tgagttcctc tgtaggcgag cgtggaacag ccataagact agttccgcta tagtcgatag
       61 cagcggtgaa cgttcgatga agcgttctca cctgccgacg aggcgtgctt cgttgcggcg
      121 ccgctacggc ttcagccagg ccgcggcata tttcagggca acgaagccgg agcccacgat
      181 gaggccatcg aacaggatgc ttagaatggc ggcaattgcg gccgcgatca cgagtgctcc
      241 gtcgcggtag ataagcgcaa ggccaaagag aacgatcgct gttgccggcg cgacatggaa
      301 cagcggaatt ggaatggccg caacgagtgc gagcagaaag cagacgatgc cgatcagcct
      361 tgccgccgtt gtcccggtaa attgcgggag ccgcggcttg aacaggcgct cgactcgggc
      421 ttcgagccaa ccgatcttgc tgaccagctt ttgaagctcg tttttcgtca cgccgcggcg
      481 gtcgagacgc gccggaaacc acgggcttgc acggccaaat accatctgcc cagcgacaag
      541 caggatgggg atcgcgaaga acgcgctcgt ccccggcgga agcgggagca tgttgattgc
      601 cgcgaagatg aacaacagcc cgccccaggc tcgaccgtga agctgcgcgg cgagctcggt
      661 aaacgacagc cggtccgggc cggtttcggc gatgatctgc acgagacgct ccgacagcgg
      721 aaccggatgc tcagcaggcg aggtgcggtg gctgtccaag gcgctgccgc tacctagatg
      781 agcccgacgg ccgacttcgc atcggcgagg accggtaatc cgatctgcgc tgcgctcgct
      841 gctccggccg cgagaatccg gtcaagctcg tcgggatgcc ggcggagatc ctcgagacgt
      901 tcacggattg gcgcaatcag tgacaccaac acgtcggtca aggccggttt gaaacggccg
      961 aagccctggc cggaaaagcg cccgagcacc gcttccatcg tttcgccggt gactgcttcg
     1021 taaatgccga ccaggttctt cgcttccggg cgcccttcga gcgcgtcggg atcgtccggc
     1081 agtggctcag gatcggtctt cgccttgcga atcttctgcg caatatcctc gttgctgtcc
     1141 gtgaggttga tccggctcat gtccgagggg tcggacttcg acatttttgc ctggccgtcg
     1201 cgaaggctca tgactcgtgc cgccgtgccg ccgccgatga agggttccgg gacaacgaat
     1261 acatcgcggt cgaaatcacc gttgaactta agagcgatgt cgcgggtgag ttcgatgtgc
     1321 tgcttctgat cttcgccgac cgggacgtgg gtcgctcggt agagaagaat gtccgccgcc
     1381 tggaggaccg gatagtcgaa gagtgcaacg gatgcgcctt cgcgattctt gccagccttg
     1441 tccttccact gggtcatgcg attgagccag cccatgcggg ccgtgccatt caagatccag
     1501 caaagctcgg aatgagcggg gacggcgctc tgcgcgaaga ggatggattt tgctggatca
     1561 atcccgctcg caatgagcgc agcggccatt tcgcggatgc tcccccggcg ctccgcaggg
     1621 tccatatatt cggagagcga gtggaggtcg gcgaggaaat acaggcattc cgcttcgttc
     1681 tgcatgcgga cccagcgcag gattgcgccg aggagattgc cgaggtgcag gccgcccgtt
     1741 ggctggatgc ccgaaactac gcgaacgtcg gtcatgcctg tcgtgcctgc cttctcacca
     1801 gtattttcaa atcctcgagc acaaaagcgc ccgtcaggaa acatgcgatt ccgtacaccg
     1861 cgactcctgc gccgacgagc gcgacgagag ccatgtagcg ttcccagatt cgcgccttga
     1921 gccatggatc gagcaactgg tcgaagccga agatcgcgac ccccatcagg agcgctgcaa
     1981 cggcgagcct tggaatgcgc cgcttcaggc gggcgtcggg cacgaaataa ccgcgcttgg
     2041 agagcgtcgc gtacaagaac caaacatttg cggtcgatga cagggctgtt gcgagtggcg
     2101 gcccgacatg accgaagccg aactgtccga gcaccgggat taggatcaga ttgccaagga
     2161 ggttgacccc gaccgactgg accgcatagc gaaccggcgt cttggtatcg tgacgcgcat
     2221 aatagccggg ggtcagcact tttacgagca cgtaagaggg taggccgatc gagaagccgg
     2281 cgagcgccca ggagcatttg gtcgtgtccg cggcgctgaa atggccatat tggaagagac
     2341 cgcgcacaat cggcccggca gcaacgatca gcgcgaccat cgccgggaga gtgaggaaaa
     2401 gcgcgagttc cattccccgg ttctgagtgt ccattgcctt cttgtcctcg ccggcactca
     2461 gaagtcgcga tatcgtcgga agaaggatcg tcccgagccc tattccgatc attccaaggg
     2521 ggagttggtt cacccggtcg gcataataga tgtacgagat cgagccctcg ccgaggagat
     2581 agcccgaaag agcggtcgag acgacgaggt tcacttggac agcacccgca ccgattgccg
     2641 ctggcaagat cagttccatc aatcgcttca cgtcggcatc aatgcgcgga agcctcggtc
     2701 gcagcgaaac gccggcagcg cggcaggcaa taaagagcca cgcgagctgc aatatgccgc
     2761 cgacgggtac ggcaagcgcc tgcactcgag cggattgcgt gggcgtacca tgaaaggcga
     2821 agagaccgcc gaccattgcg atgttgagaa ggatcggtgc cgctgcgttg acccagaatt
     2881 tttcaagcga attgagaatg ccaccgagaa gcgaggcaag gcagatcagc atcaaatagg
     2941 gaatggtgat ccggcccaat tccacggcaa aggcgaattg ctcgtgtgtc ggatgctgct
     3001 tgtggaaccc tcccgagagg attgccgtca gcggccaggc ggcaatcagc atgacgaccg
     3061 tcatgagcgc gagaaaggca aacagcaccg acagggcgcg ttcggcgaaa tcgaacgccg
     3121 ggccgcgttc gccattcgcc tcggccaact tgcgattgaa catcgggatg aacgccgaag
     3181 aaaacgcgcc ttccgcgaaa aatgcacgga acatgttcgg caatctaaac gcgacgagaa
     3241 aggcgtcgga tgcgaaattc gcgccgacat agcgtgcctg cagcgaatcg cgcacaagcg
     3301 cgagaatgcg gctcgcgagc gtcaggccac cgaccgatcc tagcgaacgc gcaagattca
     3361 tcgcggaatg ccccctggct gatcaggcta ggggtagagg cccgctcccg ccatcgccgc
     3421 cggtgaggct gccctgctgc tgcgcagctt cgagctgcgc catgtaagcc gaggcgaagt
     3481 cgatcgggtc cagcatcagc ggcgggaaac cggtgcttga tacagcttcc gaaatgacct
     3541 gg
//
LOCUS       DASRBJ010000132         3917 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_472709,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000132 DASRBJ010000000
VERSION     DASRBJ010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3917
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_472709"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1195
                     /locus_tag="VE968_03775"
     CDS             <1..1195
                     /locus_tag="VE968_03775"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU50974.1"
                     /translation="VKEAFGELSVPIVKDRPFLNELEVDGAARISNYNLGTTGSVWAW
                     NATAIYSPIRGLRFRGNIARAVRAPNQSELYTPFGTNYALVTDPCDAIAIQTGSQYRA
                     ANCLAAGVPAGTRIQYLSSLQFLQGGNMDLKAETSKSYTFGGVATPAFLPGFSASVDY
                     YNIKVANAIEYLSAQGILNECYDLPTLNNAYCALFTRAQGSQLGHSGLQYGILDNTLH
                     VEPYNYAKLRARGIDTEIAYRHQLGQVGRLDTRLTWTHVLERTDFTSIGDPNFGNRLL
                     STLGNPQDAFNWNTSLQHGRFTFGYQMRYIGRMTTAAYEDFFQFEGRPPQDPNINDKV
                     WYPAEIYHDVRLGIDVGPKFNFYMGIDNLTDVQPPYGLSGIGGGSAIYDAIGRFYYAG
                     VVAKF"
     gene            1364..3718
                     /locus_tag="VE968_03780"
     CDS             1364..3718
                     /locus_tag="VE968_03780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU50975.1"
                     /translation="MNGHSAAMTALVGLALLWIAGAALLALLAVRRLRLAQDVLDAAQ
                     SNARLLKLMPARPVLVTGDLRIDADQQLLRSLGIERNPKTLSGLTGKDRGLDADDLEA
                     LVQDVENARASAGKVSRKVRANGSARVFDVQGGPAPGEAPGSMLLWFVDASAGEEERA
                     TLALRLRQAESALNSLTHLIEAAPFPMWYRGPDLKLGLVNSAFVHAVEGRDAADVISR
                     SAELLDAQGEDSAVASAHEAQEKGRVISRMQPAIIRGERRMLRIVDVPLAGGAVAGFA
                     IDVQDLEDARSELGRYIESQRELADRMTAGTAQFDADRTLSFFNRPFAVMSQLDPEWL
                     AEKPEFDRVIDRMREQQRLPEARDFPAWKEERRGWFTSADEVIEEEWTLANGDHIRVV
                     AQPLPDSGLRLFLEDRTEQLRLASARDTLLRVRAATFDNLFEAISVFASDGRLYTWNR
                     RFLDDWELDEEWLTTHPRVDELVPAMARKLVNPTAAAQIREMVRETTNDRHSASGRIS
                     MTDGRHFQFAAVPLPDGNALFTMVDVTDSTRIEAALRERATALEEADRVKTDFVANMS
                     YELRTPLTSIGGFAELLQGGYAGELTSKGRDYVSAIIESVERLSKLINDVLDLTTGDT
                     RGVVLETERVDVAGLCRTAVEAVKPRALEKSQALDLDIGSSAGHVFGDARRLRESIEH
                     VLQNAIAYTDRKGRILLSAEGDKKQVVITIRDNGSGIDAEDLPRVFNRFDRVAEAGVR
                     GEAALGLGLPLTQQFIEAHGGKVELKSERGQGTTVIMTVPRGSR"
     gene            3715..>3917
                     /locus_tag="VE968_03785"
     CDS             3715..>3917
                     /locus_tag="VE968_03785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017666924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HZU50976.1"
                     /translation="MILRSEDETAAIGAQLARITEAGDVITLSGPLGVGKTAFARGFI
                     CALGHKGEVPSPSFALVQPYDDL"
BASE COUNT          775 a         1162 c         1200 g          780 t
ORIGIN      
        1 ggtcaaggaa gcgttcggcg agcttagcgt tccaatcgtc aaggatcggc cgttcctcaa
       61 cgagctcgaa gtcgacggtg ctgctcgcat ctcgaactac aatctcggga cgactggcag
      121 tgtctgggcg tggaatgcga cggcgatcta ttcgccgatc cgcggcctgc gctttagggg
      181 caacatcgcg cgtgcggtac gtgcgccgaa ccagtcggag ttgtacactc cgttcggtac
      241 aaactacgcc ctcgtcaccg atccctgcga tgccatcgcg atccagaccg ggtcgcaata
      301 ccgagcagca aactgccttg cggctggcgt gcccgccgga acgcgcatcc agtacttgtc
      361 gtcgctgcag ttcttgcagg gcggaaacat ggacctgaag gcggaaacat cgaagagcta
      421 caccttcggt ggagtagcaa cgccggcatt ccttccgggc ttctctgcgt cggtcgacta
      481 ttacaatatc aaggtggcta acgcgatcga gtacctgagt gctcagggca ttctcaacga
      541 atgctacgac cttccgaccc tcaacaacgc ctattgcgcc ctgttcacgc gtgcccaggg
      601 ctcgcagttg ggtcacagcg gtctccagta cggcattctc gacaacacgc tgcacgttga
      661 gccgtacaac tatgccaagc tgagggcacg cggcatcgat acggaaatcg cctatcggca
      721 ccagctcggc caagtcggaa ggctggacac caggctgacc tggacgcacg tgctcgagcg
      781 gacggacttt accagcatcg gcgatccaaa cttcggcaat cgcttgctct cgacgctcgg
      841 caatccgcag gacgcgttca actggaatac gtctctgcag catggccggt tcacgttcgg
      901 ctatcagatg cggtacatcg gtcggatgac aacggcggcc tacgaggact tcttccagtt
      961 cgaaggtcgt ccgccgcagg atccaaacat caatgacaag gtctggtatc cggccgagat
     1021 ctatcacgac gtacgtcttg gcatcgacgt cgggcccaag ttcaacttct acatggggat
     1081 tgacaacttg accgacgtgc agccgcctta tggcctgagc ggcatcggcg gcggtagcgc
     1141 catctatgac gccattggcc ggttctacta cgcgggtgtc gtggcgaagt tctgacgttc
     1201 ttcgctcgag acggaaatcg aagaggctgg gctcaatgcc cagcctcttt tttcttttgg
     1261 ccggcccgac ctttcatcgt cgacgatttt gaatgtcttt ttccttcttt ttccatgccg
     1321 tgagcgctta tgaaccgtgc atgggtgcgg ggggcattca cgcgtgaacg gtcattcggc
     1381 cgcaatgacc gctttagtcg gtctcgcgct gctgtggatc gcaggtgcag ctttgttggc
     1441 gctgctcgcg gtccgccggt tgcggctggc gcaggacgta ctcgacgccg cgcagtcgaa
     1501 cgcgcgattg ctcaagttga tgcccgctcg gccggtactc gtcacaggcg atctgcggat
     1561 cgatgcggac cagcaactgc tgcgttcgct cgggatcgaa aggaatccaa agaccctttc
     1621 gggactgacc gggaaggacc ggggtctcga tgcggatgat cttgaagcgc tcgttcagga
     1681 cgtcgagaat gctcgagcat ccgccggcaa agtgtcacgc aaggtgcgag cgaacggatc
     1741 ggcgcgtgtc ttcgacgttc aaggcggtcc cgctcccggc gaagcacccg gatcgatgct
     1801 tctgtggttt gtcgatgcga gcgcgggcga ggaggagagg gcaacccttg ctcttcgcct
     1861 tcgccaagcg gagtcagcgc tgaactctct cacgcatctc atcgaagcag ctccattccc
     1921 gatgtggtac cgaggacccg atctcaagct cgggctcgtc aacagcgcgt tcgttcatgc
     1981 cgtcgaaggc cgagatgctg ccgacgtgat ctcccgctcg gccgagctgc tggacgcgca
     2041 aggtgaggat agcgccgtag caagtgccca tgaggcccaa gaaaagggcc gggttatctc
     2101 gcgcatgcaa cccgcgatca tccgcggcga gcggcggatg cttcggattg tcgacgtacc
     2161 gcttgctggc ggcgcggttg cgggctttgc gatcgacgtt caggaccttg aagacgcgcg
     2221 ctcggaactc ggacgatata tagagtcgca gcgcgaactt gccgatcgaa tgacggcggg
     2281 cacggctcag ttcgatgcgg accgaacgct gagcttcttc aatcgtccat ttgcggtgat
     2341 gagccagctc gatccggagt ggcttgccga gaagccagag ttcgaccgcg tcatcgaccg
     2401 catgcgtgag cagcaacggc tgcccgaagc gcgcgacttc ccagcctgga aagaggagcg
     2461 gcgaggctgg tttacgagtg ccgacgaagt cattgaggaa gaatggacgc tcgccaatgg
     2521 cgatcacatt cgagtcgtgg ctcaaccgct gccggacagc ggtttgcgcc tctttctcga
     2581 agatcggacg gagcagctgc gcctcgcttc ggcacgtgac accctgcttc gggttcgtgc
     2641 cgcaaccttc gacaatctgt ttgaggcaat cagcgtcttt gccagtgacg ggcgcctcta
     2701 cacgtggaac cggcgcttcc tcgatgactg ggaactcgac gaagagtggc tgacaacgca
     2761 ccctcgcgtt gacgaacttg tcccggcgat ggcgcgaaag ctcgtcaatc caacggccgc
     2821 cgcgcagatc cgcgaaatgg tccgcgaaac gactaatgac cggcactcgg caagtggccg
     2881 catttcaatg accgacggtc gacactttca gttcgccgcg gtgccgctcc ccgacggcaa
     2941 tgcactgttc acgatggtgg acgtcaccga ttcgacgcgc atcgaagcgg cgcttcggga
     3001 gcgtgcaact gccctcgagg aggcggaccg cgtaaagacc gatttcgttg caaacatgag
     3061 ctacgagcta cggacgccac tgacgtccat cggtggcttc gccgaactcc tgcagggcgg
     3121 ttacgccggt gaacttacct cgaagggtcg cgattatgtg agcgcgatca tcgaatcggt
     3181 cgagcgcctt tcaaagttga tcaatgacgt tctcgaccta acgaccggtg atacgcgagg
     3241 ggttgtcctc gaaacggagc gggtcgacgt cgccggcctc tgccgcactg cggtcgaagc
     3301 cgtaaagccg agagcattgg aaaaatccca agctctcgat ctcgatatcg gttcgtcggc
     3361 aggccacgtc ttcggcgacg ctcggcgtct gcgcgaatcg atcgagcacg tgcttcagaa
     3421 tgcgatcgcc tatacggacc gaaaggggcg cattctcctt tcagcagaag gcgacaagaa
     3481 gcaggtcgtg atcacgatcc gcgacaatgg ctcgggaata gatgctgaag atctcccgcg
     3541 cgtattcaac cggttcgatc gcgtcgccga ggcaggcgtc aggggtgaag cagcgctcgg
     3601 ccttggtctg ccgcttaccc aacaattcat cgaagcacat ggcggcaagg ttgagttgaa
     3661 gtcagagcgt gggcagggaa cgaccgtcat catgacggtt cctcgcggat ctcgatgatc
     3721 ctgcgatcgg aggatgaaac ggccgctatc ggcgctcaac ttgcaaggat caccgaggct
     3781 ggcgacgtca tcacgctgtc cgggccactt ggagtgggta agaccgcctt tgcgcgtggc
     3841 tttatatgcg cccttggaca caagggcgag gtgccgagcc cgagtttcgc actggttcaa
     3901 ccatatgacg atctcca
//
LOCUS       DASRBJ010000133        11026 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_622351,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000133 DASRBJ010000000
VERSION     DASRBJ010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 11026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11026
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_622351"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..476
                     /locus_tag="VE968_03790"
     CDS             <1..476
                     /locus_tag="VE968_03790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HZU50977.1"
                     /translation="IDALAANLKRQLDALDFAPERLLVSFHGMPVRTLKLGDPYHCHC
                     QKTARLLQEAMGRAVDVAFQSKFGRAKWLEPATDARLHAYGKEGVRRVAVAAPGFSAD
                     CIETLEELGIRGRRTFLASGGEQFALLDCLNDSSEGIAMLQRLVTRELAGWVEQE"
     gene            503..1225
                     /gene="phbB"
                     /locus_tag="VE968_03795"
     CDS             503..1225
                     /gene="phbB"
                     /locus_tag="VE968_03795"
                     /EC_number="1.1.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018454 - acetoacetyl-CoA reductase
                     activity [Evidence IEA];
                     GO_process: GO:0042619 - poly-hydroxybutyrate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetyl-CoA reductase"
                     /protein_id="HZU50978.1"
                     /translation="MARVAIVTGGTRGIGEAISIALRDLGMVVAANYAGNEERAREFS
                     ERTGIKAFKWDVSDFEACQQGVREVESQLGPVDVLVNNAGITRDTTIRRMTHDQWQHV
                     IDTNLGGCFNMAKAVFDGMSSRKYGRIVNIGSINGQAGQYGQVNYAAAKSGIHGFTKA
                     LAQEGARFGVTVNAIAPGYIDTDMVAAVPEDVLAKIVARIPVGRLGKAEEIARGVAFL
                     CDENAGFVTGSTLSINGGQHMY"
     gene            1225..1470
                     /locus_tag="VE968_03800"
     CDS             1225..1470
                     /locus_tag="VE968_03800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008995215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HZU50979.1"
                     /translation="MVEPAYAPPRKRSVLIAGHATSISLEPMFWHALEEAARERECPI
                     NALVAEIDAARLDSRPTPNLTSAIRQWLFERSSGSRS"
     gene            complement(1415..2287)
                     /locus_tag="VE968_03805"
     CDS             complement(1415..2287)
                     /locus_tag="VE968_03805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003042023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50980.1"
                     /translation="MRIAILVPDADYPEPWHWTFDPEAEALRNAGADVEAVSWTGDRD
                     LSSFDLVLPLLVWGYHLDFPRWIALLDRAERDQWPMVNPPALLRWNSDKAYLAELAEL
                     GVSTVPTLAVEACTDADLEQARRHFDTEWLVIKPPVSASATGTHRLGLKDDVPEDSRR
                     RPMIIQPFIEEIGRTGEFSLMLFAGEFSHCVVKRPSPGDFRVQPHHGGVSFPSTPPSG
                     AEELAKQALSRAPAKAIYARVDIVADDEGTLRIMELELIEPALFLDYSPASTTLFTNA
                     ILSCAQKATALSPR"
     gene            complement(2287..6927)
                     /locus_tag="VE968_03810"
     CDS             complement(2287..6927)
                     /locus_tag="VE968_03810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004352 - glutamate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0019551 - glutamate catabolic process to
                     2-oxoglutarate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase domain-containing
                     protein"
                     /protein_id="HZU50981.1"
                     /translation="MTAHTRLDPPLVESIRKALTGNALPGETHGLTKEAERDAAEFLA
                     AVAARRTRGELVLEIESIGGEAGNRRMRIGIVNDDMPFLVDSVANAVAQRQLSIHRLL
                     HPVVCVTRDSKGELRAVEPLCGDKHRRESMMYVELDRADARGRQELAADLRRVLEDVR
                     LAVRDWESLQSKMREDANAIGDAEGAALLNWFADGAMTLLGYQSEKPYEPASNTLGIF
                     SIPGAPTDKGGALGAMHYFERGGEVPLMAKAERKSTVHRRVPLDLVVVPVKAGDTVTG
                     IGVHAGLWTSEALRVPPENVPVLRARLKQLDADFGFDPKGHSGKALRHAVASLPRDLV
                     IAIDYNALRDLVMMAMSLADRPRPALLQVRSILKGQLFTFVWLPREELSTARRTAIAM
                     LLENEIGREITSWSVELGDADLALIRYTQYIDEDAPAPDTESLDAAVVEMVRGWAPAV
                     EAELIQAAGAPRATRLALTYIGSFPDGYRARTAPEEGAADILRLCDLSDERDRAVRIS
                     RDEHDPDGQLRLKTYRRGGLIPLSDVVPVLENFGFRVLEEFPTALAGGNGYIHDFRVE
                     VGSEADIAAIIARSAEIERAISNVLCGAAEDDEFNQLVLYAGLDMQPVVWLRAWFRYL
                     RQTGSSFGLVTVVDALRRAPNATRALIGTFVAANDPSIVDREEKIAAFAEQLDRSLAK
                     IRSIDDDRILRRLRALVEAVVRTNAFAPAADEALAFKINSSMVPGLPAPVPWREIWVY
                     SPRVEGIHLRGGPVARGGIRWSDRRDDFRTEILGLMKAQVVKNAVIVPTGAKGGFYPK
                     QLPPMSNRDAWLAEGTESYRIYIRSLLSLTDNLVNDAIEHPQNVVIHDGEDPYFVVAA
                     DKGTASFSDIANEIALSRNFWLGDAFASGGSNGYDHKAMGITAKGAWISVQRHFLEMG
                     IDVQTDPITVVGCGDMSGDVFGNGMLLSKAIRLHAAFDHRHIFIDPDPDPATSWDERK
                     RLFELPRSSWDDYDRKLISKGGGVFARTEKSISLSPEAREVLGITEKALDPASLINAI
                     LKAPVDLLWFGGIGTYIKSSAQSNADVGDPSNDTLRASASEIRAKVIGEGANLGITQA
                     GRIEFAQRGGRINTDFIDNSAGVDCSDNEVNIKIPLNREMREGRLELSKRNALLAKMT
                     DDVAAIVLEDNRLQTLALSIAESGGAQALPGHVRTIELLEASGRLDRKVEGLGTSEEL
                     IRRAQENRGLTRPELAVVLSISKLVLQDAAEALELAADPLVEPQLFEAFPKAMRKSEA
                     NAIAAHRLRNEIIATKVANRLVNRLGPGVAFDLIEEEGASLQQVVSAFLVTERLLDLD
                     KLWSEIESDPLPETVRIELFSIAAASVRSHIADVIRAANGETNVTKLCELLEPGVRKV
                     SAAAAKLIRSEVKNEAAARRDRLLALGASTDIVRGLVRLYELDGVFGVAALAARHKLD
                     ELATTRAYTRLGEALGLDWAQQQVARFVASDQWERLLTAGLARDFEQLRIEFLSKCRG
                     TEIDPAVEEWVHKHETRIEQFRALVERARSEGHVSAPMLAQIAGQARILLAH"
     gene            complement(7010..8509)
                     /locus_tag="VE968_03815"
     CDS             complement(7010..8509)
                     /locus_tag="VE968_03815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50982.1"
                     /translation="MDNYRDHPNDFDTPGADENSANDVAAQIGTDERRMHVRAYNYWV
                     SLLDGRDFPSIEDLEPGDVQDFAAHSVLLDFTCGRDNPAIPYLGAAIREECAINDDVR
                     TIADVPSRSLLSRLTDHFMQIIANRAPVGFEAEFENPHGKTICYRGILMPFSSDGDTI
                     DFIYGVINWKHVNGAFADPAHPQPAATLDVEIIDAEEMARETYATEDELLELTDVFET
                     PTTDGIEPAIDAVQRERPELDVPFVDETLDDATEQREDSQPSEAGLATVDEPALDGSS
                     GAAEGAKVHFEWQDGPLSDDAGVPLIELDDDAGLADRLWAARETAESVKAGEGRTRAA
                     LYKALSLAYDFAISAEANPGEYAELLEESGVKAQARAPMTPVVKLVFGVDYDKARLTE
                     FAAALSYARRQETEIGGFQALIENRPGGLKGLVSAEREARRPGQKNDSKLDAARARLR
                     SAPTISLSDVPTDEEFAIVVTRRGARGVHEAVAVVGDPALIERAICRAV"
     gene            8819..8894
                     /locus_tag="VE968_03820"
     tRNA            8819..8894
                     /locus_tag="VE968_03820"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8852..8854,aa:Thr,seq:cgt)
     gene            9350..11005
                     /locus_tag="VE968_03825"
     CDS             9350..11005
                     /locus_tag="VE968_03825"
                     /inference="COORDINATES: protein motif:HMM:NF012363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HZU50983.1"
                     /translation="MTRWRYSFAAIVTLIGASGVSAQMNPIAGDPVHTTSGLVAGTEV
                     QSGVKAYLGIPFASPPVGDLRWKAPQPIKWAGVWNADRKGPECMQVLRPHDINHYFGE
                     EPTSENCLYMNIWAPADAKAGEKRPVIVFIYGGGGTIGSSGMANYDGTNMAKRGAVFV
                     NFNYRVGILGFMAHPQLTAEQGGHSGDYGYLDQNAALRWIRDNIEQFGGDPDKVVISG
                     QSFGAGSVAAQYTSALSKGLFRAAMMSSACGFTTESQNPPVSLADAERVGLDVQKRLG
                     ATDLAAMRNIPADKIIGIQAESQVGTNMQGLRARPDIDGYFWTGTKEDAFATHKASDV
                     PIIASSNGDDLDSNASPLTKAKTVAEYKEIARKMYGKDTGEFLRLYPVRSDADVQSMA
                     HRAAMESGMLKNSRTCAIVQAKFNKSSAFIDTFVHKHPYAPGVRIADQNIATVGAYHT
                     ADVPYWFDTLDNYNMLRTTRVPTAWDRRLTDIMSSALIALANTGSPSTAAFQWPAYSE
                     QRPNYAVFADTASIEKLDLKRMNWAAAHPPRPIAPPQAIRPRD"
BASE COUNT         2276 a         3276 c         3295 g         2179 t
ORIGIN      
        1 acatcgatgc gcttgcggcc aacctcaaac gccagctcga tgctcttgat tttgcgccag
       61 agcgcctgct cgtcagtttc cacggaatgc ccgtccgtac actaaagctt ggcgatcctt
      121 atcactgcca ctgccagaaa accgctcgtc ttctccagga ggcgatgggg cgcgccgtcg
      181 atgttgcctt ccaatcgaaa ttcggccgcg caaaatggct ggagccggcg accgatgcac
      241 gactgcacgc ctacggaaaa gaaggagtgc ggcgtgttgc ggtagccgca cccggttttt
      301 cagcggactg catcgagact ctcgaggaac tggggattcg tggccgacgc acctttcttg
      361 catcaggtgg cgagcagttt gcgttactcg attgtctcaa tgattcgtcc gaagggatcg
      421 cgatgcttca acggcttgtt acgcgcgaac ttgcaggctg ggttgagcag gaataaccgc
      481 cgcattcgga gaggagacgt ctatggcacg agtggcgatc gtcacaggag gtacccgcgg
      541 gatcggcgaa gcaatcagca ttgctcttcg tgatctcgga atggttgtcg ctgcaaatta
      601 cgcgggcaat gaagaacgcg cgcgcgagtt cagcgagcgc acgggaatca aggcattcaa
      661 atgggacgtt tccgatttcg aggcgtgtca acaaggagtg cgcgaggtcg agtctcaact
      721 cggaccggtc gacgttctcg tgaacaatgc gggaataacc cgcgacacga ccattcgacg
      781 aatgacgcac gatcagtggc agcacgtcat cgacaccaac ctcggtggct gtttcaacat
      841 ggcgaaggcg gtcttcgatg ggatgtcgtc ccgcaagtat ggacgcatcg tcaacatcgg
      901 gtccatcaac ggtcaggctg gccaatatgg gcaggtcaat tatgctgcag cgaaatccgg
      961 cattcatggc ttcacgaagg cgcttgcgca ggagggcgca cgcttcggag tcaccgtcaa
     1021 cgcgatcgct ccggggtata tcgataccga catggtagca gcggtgcccg aggacgtgct
     1081 tgccaagatc gtggcgcgca tccccgttgg tcgtcttggc aaagcggaag aaatcgcgcg
     1141 cggagttgcg ttcctgtgcg atgaaaatgc cggcttcgtc accggctcaa cgctgtcgat
     1201 caacggtggc cagcacatgt attgatggtc gagcccgcct acgcgcctcc gcgcaagcgc
     1261 tccgtgctca ttgctggaca cgcgacgtcg atcagcctcg agccaatgtt ctggcacgcg
     1321 ctcgaagaag cggctcggga acgggaatgc ccgatcaatg cactcgtggc ggaaatcgat
     1381 gcggctcgtc tcgactcgcg accaacgccg aatctcacct cggcgataag gcagtggctt
     1441 tttgagcgca gctcaggatc gcgttcgtga aaagcgtcgt acttgccggt gaatagtcga
     1501 ggaacaaggc tggctcgatc aactccagct ccatgattcg aagcgtgcct tcgtcgtcgg
     1561 caacgatatc gaccctcgcg tagatcgcct tcgccggcgc tctagaaagt gcctgcttcg
     1621 caagttcctc ggctccggag ggaggcgttg aaggaaagga cacgccgcca tgatgtggct
     1681 ggactcgaaa gtcaccgggg cttggtcgct tcaccacgca atgactgaac tcgccggcga
     1741 aaagcatgag cgagaactcc cctgtccttc cgatctcttc gataaagggc tggataatca
     1801 ttggccggcg ccgactatct tcgggaacgt cgtccttgag tccgagccga tgagtgccgg
     1861 tcgcgcttgc agagacaggc ggcttgatca cgagccactc ggtgtcgaag tggcggcgcg
     1921 cctgttcgag atccgcgtca gtacaggctt caacggctaa ggtcggaacc gtcgaaacgc
     1981 caagctcggc gagctcagca agataggcct tgtcgctgtt ccaccgaaga agtgccggag
     2041 gatttaccat tggccactgg tcgcgctcgg ctcggtcgag aagtgcaatc caccgcggaa
     2101 aatcgaggtg atagccccac acgagcagtg gcagcacgag atcgaacgac gacaggtcgc
     2161 gatcgcccgt ccaggaaacg gcttcgacgt cggcgccggc gttcctcagt gcctcggctt
     2221 ccggatcgaa tgtccagtgc cagggttccg gatagtcagc gtcgggaaca agtatggcaa
     2281 tccgcatcag tgcgcgagga ggatccgcgc ctgcccggcg atttgcgcaa gcattggcgc
     2341 actgacatga ccttcgcttc gcgcccgttc gacaagcgcg cgaaactgct cgattcgcgt
     2401 ttcgtgcttg tgcacccact cttcgacggc aggatcaatt tcggtgccgc ggcactttga
     2461 caggaactcg atccgcagct gctcgaaatc gcgcgcaagt ccggcggtaa gcagtcgctc
     2521 ccactggtcg gaagcaacga accgtgcgac ctgctgctga gcccagtcaa gaccgagagc
     2581 ttcgccaagc cgcgtgtagg cacgggtcgt cgcgagttcg tcgagcttgt ggcgcgcagc
     2641 aagagcagcg acgccgaaaa cgccgtcgag ttcgtacagc cgcacgagac cgcgaactat
     2701 gtccgtgctc gccccgagcg caagcagccg gtcccgccgt gctgctgcct cattcttcac
     2761 ctcggatcgg atgagcttcg ctgcggctgc cgagaccttt cggacgcccg gttcgaggag
     2821 ttcacagagc tttgtcacgt tggtttcgcc gttcgccgcc cggatcacgt cggcgatgtg
     2881 cgagcggacg cttgcagcgg cgatcgagaa aagctcaatc cgcaccgttt ctggaagcgg
     2941 atcgctctcg atctccgacc acaatttatc gaggtcgagc aatcgctccg taacgaggaa
     3001 ggcggagacg acttgctgaa gcgacgcgcc ttcctcttca atgaggtcga atgcgacgcc
     3061 cggaccaaga cgattgacga gccgattggc gaccttcgtt gcaatgatct cgttccgcag
     3121 cctgtgcgcg gcaatcgcat tggcctccga ctttcgcatg gccttgggga aggcttcgaa
     3181 aagctgcggt tcgacgagcg ggtcggcggc aagctccagt gcttcggcgg catcctggag
     3241 cacgagcttt gatattgaaa gaacgaccgc aagctccggt cgtgtcagtc cacggttctc
     3301 ctgtgcgcgg cggatcagct cttcgctcgt tccaagtccc tcgaccttgc gatctagccg
     3361 tcccgacgcc tcgagaagct ctatcgttcg cacatgtccg ggaagtgcct gggcgcctcc
     3421 cgattcggcg attgaaagtg ccagcgtctg gagccgatta tcttccagaa cgattgccgc
     3481 gacgtcgtca gtcatcttgg caaggagagc attgcgcttg gagagttcga gccgcccttc
     3541 acgcatttcg cggttgagcg gaatcttgat gttcacttcg ttatcggagc agtcgacacc
     3601 ggcgctatta tcaatgaaat cggtgttgat gcgtccgccg cgctgggcaa attcgatccg
     3661 gcctgcttga gtaatgccga gattggcgcc ctcgccgatg acctttgccc ggatttcgct
     3721 cgcgcttgcg cgaagcgtgt cgttcgatgg atcgccaacg tcagcgttac tttgcgcaga
     3781 agacttgatg taggtaccga tcccgccaaa ccacaggaga tcgaccgggg ctttgaggat
     3841 cgcgttgatt aggcttgcgg gatcaagcgc cttttctgtt atgccgagca cttctcgcgc
     3901 ttcggggctt agggatatcg acttttccgt tctcgcgaag acgccacccc ccttgctgat
     3961 cagcttacga tcgtaatcgt cccagcttga tcgcggtagt tcgaagaggc gcttgcgctc
     4021 atcccaactc gtcgccggat ccggatccgg gtcgatgaag atgtgccggt gatcgaaggc
     4081 cgcatgaaga cgtatggcct tcgagagtag catcccgttg ccgaagacgt cgccggacat
     4141 gtcgccgcag ccgacgaccg tgatgggatc ggtctgcaca tcgatgccca tctcgaggaa
     4201 atgccgctgt accgagatcc acgcgccttt ggcggtgatg cccatcgcct tgtgatcgta
     4261 accgttcgat ccaccgctcg cgaacgcatc gccgagccag aaattgcgcg acaaggcaat
     4321 ttcatttgca atgtccgaga aactcgcggt gcccttgtcc gcagcaacga cgaaataagg
     4381 atcctcccca tcgtggatca ccacattttg gggatgctca atcgcgtcgt tgacgaggtt
     4441 gtcggtgagc gaaagcaatg aacggatata gatccgataa ctctcagtgc cttccgcaag
     4501 ccaggcatcg cgattgctca tcggcggcag ctgcttggga taaaacccgc ccttcgcgcc
     4561 cgtgggaacg atcacggcat tcttgaccac ctgcgctttc atgagcccca ggatctcggt
     4621 gcggaaatcg tcgcgtcgat ccgaccagcg aatgccgccg cgagcaacag gtccgccgcg
     4681 caagtgaatg ccttcgacgc gcggcgaata aacccagatt tcgcgccatg gtacgggcgc
     4741 ggggagccct gggaccatgg agctgttgat cttgaaggca agtgcctcat ccgcggctgg
     4801 cgcgaaggca ttggttcgaa cgacggcttc aacaagggcg cgaaggcggc gaaggatccg
     4861 gtcatcgtcg attgaccgta ttttcgccaa tgaacggtcg agctgttcgg caaacgccgc
     4921 gatcttttcc tcgcgatcga cgatagaagg atcattcgct gcaacgaatg ttccgatcaa
     4981 cgcccgcgtc gcattgggtg cgcggcgaag cgcgtcgacg acggtcacaa gtccaaaact
     5041 gctgcctgtc tggcgcaagt agcggaacca ggcgcgaagc cacacgacgg gctgcatgtc
     5101 gagcccggca tacagaacga gctggttgaa ctcgtcgtcc tcggcagcgc cgcaaaggac
     5161 attgctgatc gcacgctcga tctcggcgga gcgcgcaatg atggccgcaa tatcggcctc
     5221 ggaaccaacc tctacccgga agtcgtggat atagccgtta ccgccagcga gtgcggtcgg
     5281 aaattcctcg agcactcgaa agccgaagtt ctcaagaacc ggaacgacat ctgaaagtgg
     5341 gatgaggccg ccgcggcggt aggtcttgag ccgcagctgc ccatcgggat catgctcatc
     5401 acgcgaaata cggacagcgc gatcacgctc gtcgctaaga tcgcacaagc gaagaatgtc
     5461 cgcagccccc tcttcaggag ccgttcgcgc acgatagccg tcggggaagc tgccaatata
     5521 agtgagtgcg aggcgcgtcg cgcgaggagc cccagccgct tgaatgagtt ccgcctcgac
     5581 ggccggagcc cagccgcgca ccatttcgac aaccgccgca tcaagcgact ccgtgtcggg
     5641 cgccggagcg tcctcatcga tatattgagt gtaccggatg agcgcgaggt cagcatcacc
     5701 gagctcgacc gaccagctcg tgatttcgcg gccgatctcg ttttcaagaa gcatcgcaat
     5761 ggctgtccgc cgcgccgtgc ttagctcttc gcgcggcagc caaacgaacg tgaacagctg
     5821 gcccttcagg atcgagcgga cttgcaacag cgctggtcgc ggtcggtccg caagcgacat
     5881 cgccatcatc accagatcgc gcagcgcatt atagtcgatc gcaatcacga gatcgcgtgg
     5941 aagcgacgcg acagcgtggc gcagcgcctt gcccgaatgt cccttgggat cgaagccgaa
     6001 gtccgcatcg agctgcttca gccgcgcacg aagcacgggc acgttctcgg gtggtacgcg
     6061 cagtgcttcg ctcgtccaga gcccggcatg aacgccaatt ccagtgacgg tatcaccagc
     6121 cttgacggga accacgacga gatcgagcgg aacgcggcga tgaacggtcg acttgcgctc
     6181 cgccttggcc atcagcggga cttcaccgcc gcgctcaaag taatgcattg ctccaagcgc
     6241 tccgcccttg tcggttgggg caccggggat gctgaagatc cctaaggtat tggaggccgg
     6301 ctcatatggc ttctcggact ggtacccaag aagcgtcatc gctccgtctg caaaccagtt
     6361 gaggagtgcc gcgccctccg cgtcgccgat cgcattcgcg tcctcgcgca tcttgctttg
     6421 gagcgattcc cagtcacgaa cggccagccg cacgtcctct aggactcggc gcaaatcggc
     6481 tgcgagttcc tgtcgcccgc gcgcatcggc gcggtcgagt tcgacataca tcattgactc
     6541 gcgacggtgc ttgtcaccgc aaagcggttc gaccgcgcga agctcgccct tcgaatcgcg
     6601 cgtcacgcaa acgacaggat gaagcagccg atgaattgag agttgccgtt gcgcgaccgc
     6661 gttcgcgacg gaatcgacga gaaacggcat atcatcattg acgatgccga tgcgcatccg
     6721 ccggttgccc gcttcaccgc cgattgactc gatctcgagc acaagctcac cgcgggtccg
     6781 acgcgccgca actgccgcaa gaaattcggc cgcgtcgcgc tcggcctcct tcgtgaggcc
     6841 gtgcgtttcg ccgggaagcg cattgccggt tagcgccttt ctgattgact cgaccaaggg
     6901 cgggtccagg cgcgtgtggg ccgtcattta ggaaattagc tccgagggac tgtggttagc
     6961 cgggcgggcc tatagacccg ccgttatcgg ccggacaacc ccgagcgcgt caaaccgcgc
     7021 ggcaaatggc tcgttcaatg agcgccggat cgccgaccac ggcgacagcc tcatggacac
     7081 ccctggcgcc acgccgcgtg acgacgattg cgaattcttc gtccgtcggc acgtccgaga
     7141 gcgagatcgt tggcgccgag cgaagccgcg cgcgcgccgc gtccagcttc gaatcattct
     7201 tctgccccgg acggcgcgcc tctcgttcag cggacacaag acccttgagg ccgcccggcc
     7261 tgttctcaat gagtgcctga aatccgccaa tctccgtttc ctggcggcgt gcgtaggaca
     7321 aggcagcagc aaattcggtc agtcgcgcct tgtcatagtc aacgccaaag acgagtttca
     7381 caacaggcgt cattggcgca cgcgcctgtg ctttcacgcc ggactcttca agaagctcag
     7441 catactcgcc gggatttgct tcagcagaga tcgcgaagtc gtatgcgagc gaaagcgcct
     7501 tgtagagcgc tgcccgcgtg cggccttcac cggccttgac gctttcggca gtttctcgcg
     7561 cggcccaaag gcggtcagca aggccggcat catcgtcgag ttcaatcagc ggtacgccgg
     7621 catcatcgga aaggggaccg tcctgccatt cgaagtgcac tttggcaccc tcggcagcac
     7681 ccgacgaacc atcgagcgcg ggttcgtcaa cagttgcgag accggcctcc gaaggctgcg
     7741 aatcctccct ctgctccgtc gcgtcgtcga gggtttcgtc gacaaatggc acgtcaagct
     7801 cgggtcgttc gcgttgaacc gcatcgatgg ccggttcgat gccgtcggtc gttggtgtct
     7861 cgaacacatc cgtcagctcg agcaactcat cttcagtggc gtaggtctcg cgcgccatct
     7921 cctccgcatc gataatctcg acatcgaggg ttgcggcggg ctgcgggtga gccgggtccg
     7981 cgaatgcacc gttcacatgt ttccaattga tcacgccgta aataaaatcg atcgtgtccc
     8041 cgtcagacga gaagggcatg agaatgccgc gatagcagat cgtcttccca tgcgggtttt
     8101 cgaactccgc ctcgaatccg accggcgctc gattggcaat gatctgcatg aaatggtcgg
     8161 taagacgcga aagcagcgat cggctcggca catctgcgat cgttcgaacg tcgtcattga
     8221 ttgcgcactc ttcgcggatt gctgcgccga gataggggat agcggggttg tcgcgcccgc
     8281 aagtgaagtc gagaaggacg ctgtgcgctg cgaaatcttg aacgtcgccg ggctccaggt
     8341 cctcgattga aggaaagtcc cgaccgtcaa ggagcgatac ccagtaattg tacgcgcgaa
     8401 catgcatgcg gcgctcatcg gtgccgatct gtgctgccac gtcattggcc gagttttcat
     8461 cggctccggg cgtatcaaag tcgttcggat gatcccggta attgtccata gcccagcccc
     8521 ggcgccccac tcttcaaatg accggcaaaa tggcggacgc gtgttaccaa agcgttaagt
     8581 ataaagctcc tggctgctcg ttcgacctcg agaacagatg gcaacgcgcg gtcgaaagac
     8641 gcgactggct gttagcccgt cgatccaacc tcccccttaa atgacggatc tcggatttgg
     8701 agggttctcc gcgaatggct gtttggctgc aaatggctga agttcatgac agctcatgaa
     8761 aggctgcttg cgaggacgct gaagcgctga tagggcgcgc acaccgccga aagagcgagc
     8821 cgctttagct cagctggtag agcacatcat tcgtaatgat ggggtcgcgt gttcgagtca
     8881 cgcaagcggc accatttcca tgtaattaca gatgcttact gagtgcgacc ttcggggcga
     8941 cgccacaatc tggaaattag taggccatta ctcggggctt gagcaactca gcttgcgcaa
     9001 gctcggtgcc ctgaagaatt gcaacgaagt cacaagcgct tgcgctcggg gacgcactcg
     9061 cgggatcaat ccactgcgtt ttccatcgga ctagaccatc gtggtccacg ccggcgatca
     9121 gagcgtccag gtgcactagc tctcggcgga aacggttgcg ggttacagca ccgcccaaca
     9181 acacttgaag agcttcggct tggaagcgat cgcgtcagtc ttggctacaa cctgctagcg
     9241 caaagcatta gtccactcgg atggaagctg cttatattgt atgacaaaat tcgttgactg
     9301 gacgtactgt tcagttagca cttcgagtct gctgtgggag gagtaagaca tgactcgttg
     9361 gcgctattcg tttgcagcga tcgtgacgct cattggcgct agcggtgtga gtgcgcagat
     9421 gaaccctatt gctggtgatc cagtgcacac aacgagcggt ctcgtcgcgg gcactgaggt
     9481 gcaatcgggt gtgaaggcat atctcggaat tccgttcgca tcgccgccag tgggcgacct
     9541 gcgctggaaa gctccgcagc cgatcaaatg ggcaggcgtg tggaatgcag atcgtaaggg
     9601 tccggaatgc atgcaagttc ttcgcccaca tgacatcaat cactactttg gcgaggagcc
     9661 cacgagcgaa aactgcctct acatgaatat ttgggctcct gctgacgcga aggcgggtga
     9721 gaagcgcccg gtcatcgtct tcatctatgg gggcggcgga acgatcggct cctccggcat
     9781 ggcgaactac gatggaacta acatggccaa acgcggcgct gtgttcgtga atttcaatta
     9841 tcgcgtcggc atcctcggat tcatggctca tcctcagctg actgccgaac agggcggcca
     9901 ctctggtgac tacggctatc tggatcagaa cgcagcgttg cgctggatcc gagataatat
     9961 tgagcagttc ggcggcgatc cggataaagt tgttatctca ggccagtcat tcggggcagg
    10021 ctctgtcgca gcacaatata cgagtgcact atcaaaaggc ctcttcagag ccgccatgat
    10081 gtccagcgcc tgcggattca cgacagagag ccagaatccg ccagtgagcc tagcggatgc
    10141 cgagagggtt ggccttgatg tccagaaacg tcttggagcg acagatctgg cggccatgcg
    10201 caatattcca gcggataaga tcatcggcat ccaagcagag tctcaggtgg ggacgaacat
    10261 gcagggactg cgcgcccggc ctgacattga cggctatttc tggactggca cgaaggaaga
    10321 tgcctttgcg acgcacaagg caagcgacgt tccgatcatc gcaagctcga acggcgacga
    10381 cctagactca aatgcttctc cgctcacgaa agccaagacc gtcgccgagt acaaggaaat
    10441 cgctcggaaa atgtacggaa aggacactgg cgagtttctc aggctgtatc cggtcagatc
    10501 ggatgcagac gtccaatcga tggctcaccg ggctgcaatg gaaagcggga tgctgaaaaa
    10561 cagccgcacc tgtgccatcg tgcaagcgaa gttcaataag tcgtcagcgt tcatcgacac
    10621 gttcgtgcac aagcatccct acgcaccagg ggtgcgaatc gccgaccaga acatcgctac
    10681 cgtcggcgcc tatcacacag ctgacgtgcc ttactggttc gatacgctgg acaattacaa
    10741 catgctgcgc acgacgcgcg tgccgaccgc atgggatcgt cggctcaccg acatcatgtc
    10801 gagtgcgctg atcgcgcttg cgaacactgg gtcaccgtcg acggccgcat tccagtggcc
    10861 agcgtatagc gagcagcggc cgaactatgc tgtgttcgcc gataccgctt ccatagaaaa
    10921 gcttgatctg aagcggatga attgggcagc agcgcatcct ccgaggccga tcgctcctcc
    10981 gcaggccatt cggccacgcg actgagtttt cggaaacggt ccaacg
//
LOCUS       DASRBJ010000134         3376 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_574814,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000134 DASRBJ010000000
VERSION     DASRBJ010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3376
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_574814"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..537)
                     /locus_tag="VE968_03830"
     CDS             complement(<1..537)
                     /locus_tag="VE968_03830"
                     /inference="COORDINATES: protein motif:HMM:NF022995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019825 - oxygen binding [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protoglobin domain-containing protein"
                     /protein_id="HZU50984.1"
                     /translation="MTAVSIPGYRLGDPALPRSPIATDEFATLKASLLFGDDDVAALR
                     KVHDVVKDQVEAILDVWYGFVGSTAHLLAYFCDPRTGQPIGAYLDAVRKRFAQWILDT
                     CRAEYDTAWLAWADEIGRRHHRSGKNRTDGVAAAPHIPMRHLLALVIPISITMKPFLE
                     KKGHSAAEVETMHAAWTKA"
     gene            630..1202
                     /locus_tag="VE968_03835"
     CDS             630..1202
                     /locus_tag="VE968_03835"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HZU50985.1"
                     /translation="MSPEALETAHLIDRLDRLARSDEQVGNLNPAQWEALRYLARANR
                     FSRTPAALADYLASTRGTVSRTLASLEAKGYVTRADNLRDGRSVEFVLSADGERTLKR
                     DPLRRLAKDVEHAAGADVVALRDALRQTLHTAITRNRGRAFGVCRTCHHFRAHVRPST
                     RTPHHCALLDEPLSEGDSLAICAEQEPAAA"
     gene            complement(1277..1891)
                     /locus_tag="VE968_03840"
     CDS             complement(1277..1891)
                     /locus_tag="VE968_03840"
                     /inference="COORDINATES: protein motif:HMM:NF012696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HZU50986.1"
                     /translation="MLDELKANNRRWAERKLSHDPSFFKRLEGQQTPKYLWIGCSDSR
                     VPANEIVDLEPGELFVHRNIANLAPPQDANYLSVLQFSVEVLKVEHILVVGHYGCGGV
                     AAAVDGKRRGLIDHWVHPIREVHHQHRHELEALPDERARWDRLVELNVIRQVKNVASD
                     VFVQDAWASGQKLSVHGWVYSIGDGLIRDLNVTVERPEQVAEGA"
     gene            complement(1971..2441)
                     /locus_tag="VE968_03845"
     CDS             complement(1971..2441)
                     /locus_tag="VE968_03845"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: protein motif:HMM:NF013071.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HZU50987.1"
                     /translation="MTPPNAQPVIVRFRDDLRLADNPALTAAITRGSPLIAVYILDDE
                     TPGSWRLGGAARWWLHHSLAALGKNIERLAGALVLRRGGPVVAIKSLIQETRVPEIAA
                     LPNAYIHKPWAAPEAVRLVARIEMDTHYPAPIVDHAMARRRALNAFARLKSMRS"
     gene            complement(2858..3226)
                     /locus_tag="VE968_03850"
     CDS             complement(2858..3226)
                     /locus_tag="VE968_03850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50988.1"
                     /translation="MTSRRTCFVNLSNHPSAMWEETQITAALALAERIADIAFPAVPP
                     DADEKAIAALAEECAAKVPPETSHALVQGEFTLTVELVRRLQARGITCLAATSEREVE
                     ENGDGRRVSTFRFVRFRAYS"
BASE COUNT          654 a         1041 c         1001 g          680 t
ORIGIN      
        1 cgccttggtc caggccgcat gcatcgtctc gacctcggct gccgaatggc ccttcttctc
       61 caggaacggc ttcatggtga tcgagatcgg gatcacgagc gcgagcagat gacgcatcgg
      121 aatgtgcggt gctgccgcaa cgccgtcggt ccgattcttg ccggaacgat ggtggcgccg
      181 gccgatctcg tcggcccagg caagccacgc cgtgtcatac tcggcccgac aggtgtcgag
      241 aatccactgg gcgaagcgct tacgcacggc gtcgagatag gcgccgatgg gctggccggt
      301 cctggggtcg cagaaataag ccagaagatg cgccgtcgag ccgacgaagc cgtaccaaac
      361 atcgagaatg gcctcgacct gatccttgac cacatcgtgg accttccgga gcgccgcgac
      421 atcgtcgtca ccgaagagaa gcgaggcctt gagcgtcgca aactcgtcgg tcgcaatcgg
      481 agacctgggc agcgccggat cgccaagccg atagccggga atgctaaccg ccgtcatgga
      541 tgcacctccg attgcaaaga tgattgctag tcgctattat caaaccatac ctgacgtcgt
      601 caatataatt tcgagtagca actatgcctt tgtctccgga agcgcttgaa acggcgcacc
      661 tgattgaccg tctcgaccgg cttgcccggt cggacgagca agtggggaat ctcaaccccg
      721 cccagtggga agccttgcgc tatctggcgc gcgccaaccg cttttcgcgg acgccggcgg
      781 cgctggccga ctatctcgcg tcaacccggg gcacggtttc gcgcacgctc gcttcgctgg
      841 aagccaaggg ctacgtcacg cgggcggaca atctgcgcga tggccgttcg gtcgaatttg
      901 ttctcagcgc cgacggggag cggacgctga agcgcgatcc cttgcgccgg ttagcgaagg
      961 atgtcgagca tgccgccggc gccgacgtcg ttgcgctgcg cgatgccttg cggcaaacgc
     1021 tgcacactgc gattacccgc aaccgaggcc gcgccttcgg cgtctgccgg acctgccacc
     1081 actttcgggc gcacgtccgg ccttcgaccc gcacacccca tcattgtgcg ctgctcgacg
     1141 agcctttgtc tgaaggcgac agcttggcca tctgtgccga gcaggagccg gcggcggcgt
     1201 gataggccaa actcgggatg attccgaacg ccgcgagtta cgagcagggc acagtcttgc
     1261 attgagtttc cgcttttcag gcgccctcgg ccacctgctc gggacgctcg accgtgacgt
     1321 tgaggtctct gatgagccca tccccaatcg aatagaccca gccgtgcaca gaaagctttt
     1381 ggccgctcgc ccatgcgtct tggacaaaca cgtccgaggc aacgttcttg acctgccgga
     1441 tgacgttcag ctcgaccagg cgatcccaac gggcgcgctc gtctggcaga gcctccagtt
     1501 cgtgcctgtg ctgatgatga acttcgcgaa tgggatggac ccagtggtcg attaggccgc
     1561 gccttttgcc atccacggct gccgcaacac cgccgcagcc ataatgcccc accacgagga
     1621 tgtgctcgac tttcagcact tccacggaaa actggagcac cgacagatag tttgcgtcct
     1681 gtggcggcgc gagattggcg atattccggt gcacgaagag ctcgcccggt tcgaggtcta
     1741 cgatctcgtt cgcaggcaca cggctgtccg aacagccaat ccacaagtac tttggcgtct
     1801 gctgaccttc gaggcgcttg aagaaacttg gatcatgcga gagcttgcgc tccgcccaac
     1861 gacggttgtt ggctttcaat tcatccagca tcggtaggtt ctctcagtgg aagacttagt
     1921 gtctggcgac ccggcttgca ctttgcgtgc gatcctcggg acccctgcgc tcaagatctc
     1981 atcgatttca ggcgggcaaa cgcgttcagg gcgcgccgac gtgccattgc atgatccacg
     2041 attggcgccg gatagtgtgt gtccatttca atcctcgcga ccaaacgcac ggcttcaggc
     2101 gctgcccagg gtttgtggat gtaggcattc ggaagcgcgg cgatctcagg caccctcgtc
     2161 tcctgaatca aggatttgat cgcgaccacc ggcccgcctc gccgcaacac caatgcgccg
     2221 gccaggcgct cgatgttctt gccaagtgcc gcgaggctat gatgcagcca ccagcgtgcg
     2281 gcaccgccga gccgccagct tccgggcgtc tcatcgtcga gaatatagac ggcgataaga
     2341 ggcgagccac gcgtgatcgc cgcggtaagc gccgggttgt cggcgagccg caagtcgtct
     2401 cggaaccgga cgataacggg ctgggcgttc ggcggggtca tgctctccat tcttcacagt
     2461 ccggcgcgtc gtgacagacg gatgcatgaa ggcccaacca tgcatgtgca ttattgacct
     2521 agaacgcaaa tagacaaccg cgctatgctt cgaaatcagc ggcgacggct ttggcggtcc
     2581 ttttctgttc tggaaaagga gattggactc aagccgcatg gttgtaacta aaagaaatgt
     2641 cctcacctcc ggtaaggagt agagaaaaag tgttctcatt atcatattta cactatacgt
     2701 gatgaccgaa ctctcatggg cgcgctcgtt attgacggag tcgactgcac gctcatacgt
     2761 tatatatgat gttgctacga tataatcttt ggcgcatcgg tggctcggtc cgagctgtcg
     2821 catcgtgacc gattttcggc gctttgctct ctgcagctca ggagtaggcg cgaaagcgca
     2881 cgaacctgaa ggttgacacc cgccgcccgt cgccgttctc ttcaacctcc cgctcgcttg
     2941 tcgcagcaag acaggtgatg ccgcgcgcct gcaaccggcg aaccaactcg accgtgaggg
     3001 tgaactcgcc ctgcacgagc gcgtgtgacg tttcgggggg aaccttggcg gcgcactcct
     3061 ctgcgagtgc tgcgatcgcc ttttcgtcgg cgtcgggcgg aacagcaggg aaagcgatat
     3121 ccgcgattcg ctcagcgagt gcaagcgccg ccgttatttg tgtctcctcc cacatggcgc
     3181 tcggatgatt ggagagattg acgaaacagg tgcggcgaga ggtcatgctt ttcagcccct
     3241 accgtaaccc ctttccgatg ttcgattcac catctccttg gccggtcctc tacaagtggt
     3301 gatcgatgga atccgcaatg aaattagcgc cgtcgtaatg gccatacagc cgcccagcgc
     3361 tgccatcgct ccagag
//
LOCUS       DASRBJ010000135         2820 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_679317,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000135 DASRBJ010000000
VERSION     DASRBJ010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2820
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_679317"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..355)
                     /locus_tag="VE968_03855"
     CDS             complement(<1..355)
                     /locus_tag="VE968_03855"
                     /EC_number="3.5.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017499550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009015 - N-succinylarginine dihydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006525 - arginine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-succinylarginine dihydrolase"
                     /protein_id="HZU50989.1"
                     /translation="MPLLEINFDGIVGPSHNYAGLSLGNLASTTNAGATSQPRAAALQ
                     GLDKMRANLRRGQSQGIFLPHPRPDHDWLAQLGADIHTAEPSLAANAMSASAMWAANA
                     ATVSPAPDAADGKCHL"
     gene            complement(355..1371)
                     /locus_tag="VE968_03860"
     CDS             complement(355..1371)
                     /locus_tag="VE968_03860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine N-succinyltransferase"
                     /protein_id="HZU50990.1"
                     /translation="MSFRVRAAGAEDFPAIYEMAKLTGGGFTNLPPERATLVAKLAKS
                     EQSFARAEDSQSGDLYMFVLEDPKTKKIRGTCQVFGQVGLEHPFYSYHLSTLTQSSPE
                     LGKTFRNQLLTLTTDLEGSSEVGGLFLHPQQRAGGWGSLLARSRYLFIKLHRARFGDR
                     TLAELRGVMDQGGNSPFWDSLAGKFFEMTFPEADEFNAVHGTKFIADLMPRFPIYVSL
                     LTEGARNVLGLPHPSGRAALRMLEEEGFTYDRYVDIFDGGPTVTSATDRIRTIRESTL
                     ERIAEIAEGGRSRMLVAAGRLKNFRACCASVKRVARKGIAIDRESAELLEIEPGDEVL
                     TVAR"
     gene            complement(1368..2573)
                     /locus_tag="VE968_03865"
     CDS             complement(1368..2573)
                     /locus_tag="VE968_03865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HZU50991.1"
                     /translation="MAQLSSSERAVVERAEAEPMLDRVLDWAGINSGSRNLGGLERMA
                     DVLLDAFATLPGLIRLERPSTVKSVDGAGRAIEIEHGRHLHLTVRPTAGIQLLFTGHM
                     DTVYGMDHAFQDCRWLDDGRLNGPGVADMKGGLAVMLAALKGLETSHLADRIGYEVVI
                     NSDEEVGSLSSAELLKRAATGKRAALTYEPAALPDGTLAGARPGSGNFDFVVHGRSAH
                     AGRNPEDGRNAIVAAAELALRLSMSKTPGLSINPAKIDGGGPNNVVPDLAILRVNLRP
                     RTTDDQEIAARLIAKALDETVKQHDVHIEAHGGFGRPPKPLSEEAEILFKIVKEAGTD
                     LGQTIAWQRSGGVCDGNNIAACGVPVVDTMGVRGGKIHSNDEFLIIDSLKERAALSAL
                     TVMRLGERA"
     gene            complement(2615..>2820)
                     /locus_tag="VE968_03870"
     CDS             complement(2615..>2820)
                     /locus_tag="VE968_03870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HZU50992.1"
                     /translation="WGIAMRLGQRLSGGVGAVLERTKLELTNSTVRLAVRKGEEAIIG
                     DQVQRRLSRLADALGREPAITSF"
BASE COUNT          543 a          871 c          837 g          569 t
ORIGIN      
        1 tgagatgaca cttgccgtct gcggcatccg gcgccggcga tacggttgcc gcattggccg
       61 cccacattgc cgacgccgac attgcatttg ccgcaagcga aggttctgcc gtgtgaatgt
      121 cggcgcccaa ttgcgcgagc cagtcatgat ccggccgcgg atggggaaga aagatgccct
      181 ggctctgccc gcgtcgcaga tttgcgcgca tcttatcgag cccctggagc gcggcggccc
      241 tcggctgcga agtcgctccg gcgttcgtcg tcgaagcgag gttccctaaa ctgagtccgg
      301 catagttatg gctcgggccg acaatgccgt cgaaattgat ttcgagtaga ggcatcagcg
      361 cgcgaccgtc aggacttcat caccaggctc aatctcgagg agctcggctg attcacggtc
      421 gatagctatg cctttcctcg caactcgctt cacggatgca cagcaggcac gaaagttttt
      481 gagacggccc gcggcaacga gcatccttga gcggccgccc tcagcgatct cggcgatccg
      541 ctcaagcgtc gattcccgga tggtgcgaat gcggtcggtc gcgcttgtaa ccgttggtcc
      601 gccgtcgaaa atgtcgacgt atcgatcgta cgtgaaccct tcttcttcga gcattcgtaa
      661 agcggcgcgg ccgctgggat gcgggagtcc aagaacattc cttgcaccct cagtcagtag
      721 cgagacgtag atcggaaacc gaggcatgag atccgcgatg aacttggtgc cgtggacggc
      781 attgaactcg tcggcctcag ggaaggtcat ttcgaagaac ttgccggcga gactgtccca
      841 gaaaggcgag ttgccgccct ggtccatgac gccacgaagc tcggcgagcg ttcgatcccc
      901 gaagcgagcg cggtgaagct tgatgaagag gtaccggctt cgcgcaagaa gcgaacccca
      961 tccccccgcg cgttgttgtg ggtgaaggaa aaggccaccg acttcggatg acccttccag
     1021 atcggttgta agtgtcagca gctggttgcg gaacgtcttg ccaagctccg ggctcgactg
     1081 cgtcagcgtg ctcagatgat atgaatagaa tggatgctca agtccgactt gaccaaagac
     1141 ctggcaggta ccgcggatct tcttcgtctt gggatcttcg agcacgaaca tgtaaagatc
     1201 gccgctctgg ctatcctcgg cacgcgcaaa gctctgctcg gacttggcaa gctttgcgac
     1261 gagtgtcgca cgttcgggag gtagattggt gaagcctccg ccggtaagct tcgccatttc
     1321 gtaaatcgct ggaaaatctt cagccccagc agcacgaacg cgaaagctca tgcgcgttcg
     1381 cccaaacgca ttacggtaag ggcactaagt gcagcacgct ccttgaggct gtcgatgatc
     1441 aggaattcgt cgttgctgtg aatctttccg ccgcgcacgc ccatcgtgtc gacgactggc
     1501 acgccgcatg ccgcgatgtt gttgccgtcg cacacgccgc ccgagcgttg ccaggcgatt
     1561 gtctggccaa gatcggtgcc agcttccttg acaatcttga acaggatctc ggcttcttcg
     1621 ctcaaaggtt ttggcggtcg tccaaagccg ccatgcgcct cgatatgaac gtcgtgctgt
     1681 ttgaccgtct cgtcgagcgc ctttgcgatg agccgggcgg cgatctcctg gtcgtctgtc
     1741 gtccgcggcc tcaagttcac cctaaggatc gcaaggtcgg gaaccacatt gttcgggccg
     1801 ccgccgtcga tctttgccgg gttgatcgaa agtcccggtg tcttcgacat cgaaagtctc
     1861 agcgccagct cggccgccgc aacgattgcg ttgcgtccat cttcagggtt tcggccggcg
     1921 tgggccgaac gcccgtggac aacgaaatcg aaattgccgc tccccggtct cgcgccggcc
     1981 aaggtgccat ccggcaacgc cgcaggttca taggtaagag cagcgcgctt gccagttgct
     2041 gctcgtttca gaagctctgc cgatgacaaa gagccgactt cctcgtcgct gttgatcacg
     2101 acctcatagc cgatccggtc ggcaagatgg ctcgtctcca agcccttcaa agcagcgagc
     2161 atcacggcaa gaccgccctt catgtcggcc actcctgggc cgttcaatcg cccgtcgtcc
     2221 agccatcggc agtcctggaa cgcatggtcc atcccgtaaa ccgtgtccat gtgcccagtg
     2281 aataacaatt ggatgccggc cgttggacga accgtcaggt gcaggtgccg accatgctcg
     2341 atctcgatcg cccggccggc gccgtccacg gacttgaccg tcgatggacg ttccagcctg
     2401 atgagccctg gaagggtggc aaaggcatca agaagcacgt ccgccatgcg ctcaagccca
     2461 ccaagattac gggagccact gttgatccct gcccagtcga gcacccgatc gagcatcggc
     2521 tccgcctccg cgcgttcaac gaccgcgcgc tcgctcgacg ataattgcgc catggaaacg
     2581 gctctagcgg tgtgagctca ggaaggccac accactagaa gctggtgatt gcgggttcgc
     2641 gccccaatgc gtcggcgagg cgcgacaagc ggcgttgcac ctggtcgcca atgattgctt
     2701 cttcgccctt gcgaacggca agtcgaacgg tgctgttcgt gagttcgagc ttcgtgcgct
     2761 cgagcactgc accgacgcct ccggaaagcc gttggccgag acgcattgcg atcccccagc
//
LOCUS       DASRBJ010000136         2410 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_679394,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000136 DASRBJ010000000
VERSION     DASRBJ010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2410
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_679394"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..730
                     /locus_tag="VE968_03875"
     CDS             <1..730
                     /locus_tag="VE968_03875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HZU50993.1"
                     /translation="KHLMRLCADSMTRVTMELGGHAPVLIFDDCDLEKTLDMVVPQKF
                     RNAGQVCVSPTRFYVQRGIYDAFVKGFAERTAKVKVGNGLEEGVKMGPLANARRPDAI
                     ETLVADAKAKGARVLAGGERGDSGFFFQPTLLADVPIEANIMNEEPFGPVAVSRPFDT
                     FEEVIEQANRLPYGLAAFAFTENGRRANLIGDLVESGMVGINTFAISGADTPFGGVKD
                     SGFGSEGGKEGLESYQVVKAVHQA"
     gene            complement(743..1123)
                     /locus_tag="VE968_03880"
     CDS             complement(743..1123)
                     /locus_tag="VE968_03880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50994.1"
                     /translation="MFSIDDVRFLKLLLIAWAALSLAQMRTPSVESLGGALVIAGVTW
                     LVMRNDAPEAFHIISRPSAAILLVVGVLGIGNYYNATEHTGLNPDERLVDATLTVAGL
                     LALIGLIGVLLLPWRRADARTGAD"
     gene            1213..1638
                     /locus_tag="VE968_03885"
     CDS             1213..1638
                     /locus_tag="VE968_03885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU50995.1"
                     /translation="MTEYRKMDADELRVLRRGMALTQAGVANWLGVSRKTIVELEAGR
                     SAIDERTAISVRRMAERTKVLENSFWVEESKRGTWLVIRRTSREMPHDTAMFYMQSDR
                     ILYGEFKRRIDAYRWCSALRHADNPRNTRRLERERAAVF"
     gene            complement(1652..>2410)
                     /locus_tag="VE968_03890"
     CDS             complement(1652..>2410)
                     /locus_tag="VE968_03890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008071479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HZU50996.1"
                     /translation="PMDVAPVTAFQSGTNRWERLNAWPAASASARLYLQPGMSVGFSP
                     AEGPVRTADYVSDPAHPVTYVPRPDRTVDYSNDLWKAWLTTDQREYSTRPDVLTFTGP
                     VLTTPVTVAGSPIVHLTASTSGTDSDWVVKLIDVYPDEVPIDRYMSGYQFPIAMDIFR
                     GRYRESLAEAKPIKANVPLGYTFALPTTNHVFLPGHRIMVQVQSSWFPLYDRNPQTFV
                     PNIFFAKPADYVKAEQKVVVAGPEESFIELPVVR"
BASE COUNT          492 a          727 c          745 g          446 t
ORIGIN      
        1 caagcatctg atgcgcctct gcgccgacag catgacgcgc gtgacaatgg agctcggtgg
       61 ccacgcgccc gtgctgatct tcgacgattg cgacctcgaa aagacactcg acatggtcgt
      121 cccgcagaag ttccggaacg cgggccaagt gtgcgtctcg cccacccgtt tctacgtcca
      181 gcgcgggatt tacgacgcgt tcgtgaaggg cttcgccgag cgcacggcca aggtgaaggt
      241 cggcaatggg ctcgaggagg gcgtcaagat gggcccgctc gccaatgcgc ggcggcccga
      301 tgcgatcgag acactcgtcg cggacgccaa ggcgaagggc gcgcgcgtgc tcgcaggcgg
      361 cgagcgcggc gacagcggat tcttcttcca gccgacgctg ctcgccgatg tgccgatcga
      421 agcgaacatc atgaacgagg agccgttcgg ccccgtcgcg gtcagccgcc cgttcgatac
      481 gttcgaggaa gtgatcgagc aggccaatcg tctgccctac ggcctcgccg ccttcgcctt
      541 caccgagaac ggccgccgcg cgaacctgat cggcgacctg gtcgaaagcg gaatggtcgg
      601 gatcaacacc ttcgccatca gcggcgccga cacgccgttc ggcggggtca aggattcagg
      661 cttcggctcc gagggcggca aggaaggcct cgaaagctat caggtcgtga aagcggtgca
      721 ccaggcgtga tcacgagacg agtcaatccg cgccggttcg cgcgtcggct cgtctccatg
      781 gcagtaagag aacgccgatc agtccgatca acgccaagag ccctgccact gtgagagtgg
      841 cgtccaccag acgctcatca gggttcagtc cggtatgttc ggtagcgttg taatagtttc
      901 ctattcccaa aacgccgact accaacaata tcgcagcact tggccgtgag atgatgtgga
      961 atgcttcggg cgcgtcattg cgcatcacga gccacgtgac gccagcgatt accagcgctc
     1021 ctccaagact ctccacactc ggcgttcgca tctgcgctag actgagagca gcccaggcaa
     1081 tgagcaggag cttgagaaat ctcacgtcat cgatgctgaa cattgttcaa tgagaacgca
     1141 aggctgtaca acattgtaac gactcgttac aaatcagttg acggatgtaa cgcatcgtga
     1201 cattattctt gaatgactga atatcgcaaa atggatgcgg atgagcttcg cgtgctgcga
     1261 cgaggcatgg cgctaacgca ggccggcgta gctaattggc ttggtgtaag tcgaaagacg
     1321 atcgtcgaac ttgaggccgg ccgctccgcc atcgacgagc ggacggcaat ttccgtccgg
     1381 cgaatggcag aacgaacgaa ggttcttgaa aactcgttct gggttgaaga gtctaaacgt
     1441 ggaacatggt tggtcatccg cagaaccagc cgcgaaatgc ctcacgatac ggccatgttt
     1501 tatatgcaga gcgaccgcat tctctacggt gaattcaagc ggcggattga tgcataccgg
     1561 tggtgctctg cgctacgaca tgcagacaat cctcgaaaca cccgcaggct cgagcgagaa
     1621 cgcgctgccg tcttttagtg aagttaccta attaccgcac caccgggagc tcgatgaagc
     1681 tctcctccgg cccagccacc accaccttct gctccgcctt cacgtaatcc gccggcttgg
     1741 cgaagaagat gttggggacg aaggtctgcg ggttgcggtc gtaaagcggg aaccagctcg
     1801 actgcacctg gaccatgatc cggtgccccg gcaggaacac gtggttggtc gtcggcagcg
     1861 cgaacgtata gcccaagggc acgttggcct tgatcggctt cgcctcggcg agcgactccc
     1921 gatagcggcc gcggaaaatg tccatcgcga tcgggaattg atagccgctc atgtagcgat
     1981 cgattggcac ctcgtcggga tagacgtcga tcagcttcac cacccagtcg ctgtcggttc
     2041 cgctggtcga ggcggtgagg tggacaatgg gactccccgc gaccgtcacc ggcgtggtta
     2101 gcacgggccc ggtgaaggtc agcacgtcgg gccgagtcga atattcgcgc tgatcggtcg
     2161 tcagccatgc tttccacagg tcgttgctgt aatcgaccgt ccggtccggc cgcggcacgt
     2221 aggtcacggg atgcgcagga tccgaaacgt aatcggccgt cctgaccggg ccctcggccg
     2281 ggctgaagcc gacgctcatt ccgggctgca ggtataacct tgcgctggcg ctcgccgccg
     2341 gccaggcgtt cagccgctcc cagcggttgg tgcctgactg gaacgccgtc accggcgcga
     2401 cgtccatcgg
//
LOCUS       DASRBJ010000137         4250 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_622667,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000137 DASRBJ010000000
VERSION     DASRBJ010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4250
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_622667"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2109
                     /locus_tag="VE968_03895"
     CDS             <1..2109
                     /locus_tag="VE968_03895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013836333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HZU50997.1"
                     /translation="LPDVIATPKHFAVHSGPESTRHKADVFVSRHDLEDTYLPAFRAA
                     IVEAKAQSVMCAYNRVDGQPACASDELLKDHLRGAWGFAGYVVSDCDAVKDISDSHHY
                     APDAASAVAAAMRGGVDNECNTATLGPNPPPLTDRYRQALARHLITKTDIDRSLVRLF
                     SARFRNGDLPGVRSGRTVPPAAIGTPEKRALALKAAEESLVLLKNDAVLPLKPGARIA
                     LIGPLADATRVLRGNYSSPASAPPISVRSGLAQAMPQARITYAPSGQSLTDGDPVPLS
                     ALQTDDGKTGLTARYYNALPAAPGRNGSPMSVEAAPSAIAIEPGLGGGESDLSAVHED
                     HRVIWSGYLVPPETGTYRLGLSGWQNGKLLLDGEALVELVNAPWGSLPRMNLVHLEKG
                     HRYRLEVSADVHGTAGVGLVWKRVSEHPQAELKKAAADADVIVAVVGLTSDLEGEEAP
                     VDLPGFKGGDKTNLELPQDQQRLLDDAKATGKPLIVIIMNGSPINLAWEKENASAILE
                     AWYPGQSGGLAVANVLSGKTNPGGRLPLTFYRSVTDLPPFEDYSMAGRTYRYFTGVPV
                     YPFGYGLSFTTFAYGPLKVAKRGTDAAQGLRVSAEVTNMGERAGDEVAELYLRFPDAP
                     GTPRMALRGFERLSLKPGETRRATFELSPRDLSSVTSDGVRMVLPGRYVVSVGSGQPG
                     TGVPVRSARFEVERSRPLPQ"
     gene            2157..3092
                     /locus_tag="VE968_03900"
     CDS             2157..3092
                     /locus_tag="VE968_03900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase fold domain-containing
                     protein"
                     /protein_id="HZU50998.1"
                     /translation="MRRKPATGQSLSCFALVAAVSIGLGSPAQAQDDRMTPIPTPAQQ
                     QAIDLGTGKLPEGAAAESWYRQYDRSFARNVAVATLTPFLPDLAKANGTAIIVAPGGG
                     FRTLSMENEGSDVARALAQHGIAAFVLKYRLVPTPADMKSFEEAMRAMFAGAGRPPAG
                     AQRSPSLEPQLADARAAFSLVRSRARQWHIDPHRVGMVGFSAGAMLTLETALRGDAKP
                     AFIGIIYGPLDPVTVPADAPPMFVALAADDPLFGGRGMGLVQSWMAAKRPVEFHLFEQ
                     GGHGFGMYQKTTTSTGWFDAFLRWLGMHGLLKATH"
     gene            complement(3218..3640)
                     /locus_tag="VE968_03905"
     CDS             complement(3218..3640)
                     /locus_tag="VE968_03905"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HZU50999.1"
                     /translation="MPMLAQFEEVSPRTDRRRSARRELKLGVSASEQNVTVHDLSLTG
                     ALLETSVPMLVGQVFQVELPDAGKVSATIVWNSGEYYGCQFDYPIAPSTLSAALLRSA
                     PARPGTEPDPVSELRALSNEVEHLSLMMERALKRLSRD"
     gene            3883..4026
                     /locus_tag="VE968_03910"
     CDS             3883..4026
                     /locus_tag="VE968_03910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51000.1"
                     /translation="MRRSTFSAMTKSDETHALSWPWWAPWALLAVALTSLLTVGATLY
                     DIL"
     gene            4033..>4250
                     /locus_tag="VE968_03915"
     CDS             4033..>4250
                     /locus_tag="VE968_03915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU51001.1"
                     /translation="MADALPPPPAAIVITGTALPEARAERVYATDRIGRREIEQSPSH
                     ALDQLLKDVPGVQLFRRSDSTSGHPTSQG"
BASE COUNT          791 a         1359 c         1301 g          799 t
ORIGIN      
        1 ctacccgacg tgatcgcgac gccgaagcat tttgccgtgc atagcggccc ggaatcgacg
       61 cgccacaagg cggacgtgtt cgtctcgcgc catgaccttg aagataccta tctccccgcg
      121 ttccgcgcag cgatcgtcga agcgaaagcg cagtcggtga tgtgcgccta caaccgcgtc
      181 gatggccagc ccgcgtgcgc cagcgacgag ctcctgaagg accatcttcg gggtgcctgg
      241 ggctttgctg gttacgtggt ctccgactgc gatgccgtga aggacattag cgacagccac
      301 cattacgcgc ccgatgcagc aagcgccgtt gcggcagcca tgcggggagg agtggacaat
      361 gaatgcaaca ccgcaactct tggtcccaat ccgccgccgc taaccgaccg ctaccgccaa
      421 gcgcttgccc gccatctcat taccaagacg gacatcgatc gttcgctcgt acgccttttt
      481 tcagcgcgtt tccgaaatgg cgatttgccc ggcgttcgga gcggtcgaac cgtcccgccg
      541 gcggctatcg gtaccccgga gaaacgggcg cttgcgttga aggctgccga agaaagcctc
      601 gtccttttga agaatgacgc agtcctgcca ctaaagcccg gagcccggat cgcgctcatc
      661 ggaccgcttg ccgatgcgac tcgggttctt cgcggcaatt attcatcgcc cgcgtcggcg
      721 ccaccgatct ccgtccggtc gggtcttgcg caggcgatgc cgcaagccag gatcacttat
      781 gctccttcgg gtcaatcact gaccgacggc gaccccgtcc cgctctcggc gcttcaaacc
      841 gacgacggaa aaactggact tacggcgcgc tactataatg ctcttcccgc cgcacccggc
      901 aggaacggct ctccaatgag cgtcgaagca gccccttcgg caatagcaat cgagccgggg
      961 cttggtggcg gcgagtctga cctaagcgcc gtccatgaag accaccgcgt catctggagc
     1021 ggctatctcg tgccgccgga gaccggcact tatcgtcttg gactctccgg gtggcagaac
     1081 ggcaagcttc tcctcgacgg cgaagcgctc gtcgagctcg tgaatgcgcc ctggggaagc
     1141 cttcccagga tgaacctggt gcacctcgaa aaaggccatc gttaccggtt ggaagtttcg
     1201 gcggacgtcc atgggactgc cggggtgggg ctcgtctgga agcgcgtctc cgagcatccg
     1261 caagctgagc tcaagaaagc cgcggcggac gccgacgtga tcgttgcggt tgtcgggctg
     1321 acatccgacc ttgaagggga agaagcgccg gtcgatcttc cggggttcaa gggcggcgac
     1381 aagacgaatc tcgagcttcc gcaggaccag cagcgccttc tcgacgatgc caaggcgacc
     1441 ggaaaaccgc tcatcgtcat catcatgaac ggaagcccga tcaatcttgc ctgggaaaag
     1501 gagaatgcaa gcgcgatcct cgaagcctgg taccccggcc agtcgggcgg tcttgccgtc
     1561 gccaacgtcc tttccggcaa aaccaatcct ggaggaagac tgccgctcac tttctaccgg
     1621 agcgtcacgg atcttccgcc ctttgaagac tacagcatgg ccggacgaac ctatcgctat
     1681 ttcacgggag tgccggtcta cccgtttggt tatggcctca gctttacgac attcgcttat
     1741 ggaccgctca aggttgccaa gcgcggcacg gacgcggctc aagggcttcg tgtttcggcc
     1801 gaggtcacga acatgggcga gcgagccggc gacgaagttg ccgagcttta cctccgtttc
     1861 ccggacgcgc cgggtacccc gaggatggcg cttcgcggct ttgaacggct gtcgctgaaa
     1921 cccggcgaaa cccggcgggc caccttcgag ctttcaccac gcgaccttag cagcgtgacg
     1981 agcgatggcg tccggatggt tcttccgggt cggtatgtcg taagcgtcgg atcgggccag
     2041 cctggaacag gcgttcctgt ccgttccgcg cgctttgaag tcgaacgctc gcgacccttg
     2101 ccgcaatgag ccgcctcaag acaagcattc ctttggtgaa gagaggaaag aagcccgtgc
     2161 gaaggaagcc agcaaccggt caaagcttgt cgtgcttcgc gcttgtcgct gccgtttcaa
     2221 ttgggcttgg cagcccggcg caagcacagg acgacaggat gacgccgatc cccacaccgg
     2281 cgcagcaaca ggcgatcgat cttggaaccg gcaagcttcc tgagggcgcc gccgccgaga
     2341 gctggtaccg ccaatatgac cgttcctttg cacgcaatgt cgcggtggcg acgctcacac
     2401 cctttctgcc cgatctcgcg aaggccaacg gcaccgcaat catcgttgca ccgggcggcg
     2461 ggtttcggac gctgtcgatg gaaaacgagg gttcggacgt cgcgcgcgcg cttgcgcagc
     2521 acggcatcgc ggctttcgtc ctcaagtacc ggctcgtgcc gacgccggcc gacatgaagt
     2581 cgttcgagga agcgatgcgt gcgatgttcg cgggtgcggg gcgaccgcca gccggcgcac
     2641 agcgctcgcc ctcgcttgaa ccccagcttg ctgatgcacg agccgcattc tcgcttgtcc
     2701 ggagccgtgc acgccaatgg catattgacc cgcaccgcgt gggcatggtc ggtttttcgg
     2761 ccggcgccat gctgacgctc gagacggccc tccgtggcga cgccaaaccg gcgttcatcg
     2821 gcatcatcta cgggccactt gaccccgtca ccgtaccggc ggacgcgccg ccgatgttcg
     2881 tcgcgcttgc tgccgatgat ccactcttcg gcggccgcgg catgggcctt gtccagagct
     2941 ggatggccgc gaaacgtccc gtcgagttcc accttttcga acagggcgga cacggctttg
     3001 gcatgtacca gaagaccacc acgagcaccg gctggttcga tgccttcctc cgctggctcg
     3061 gcatgcacgg gttgctcaaa gcgacgcact gacgcgcgcg gcaatttgcc cgtgagggcg
     3121 ctggaaagcg attgttgtcc ggtttgaaga gatccgcttg cccaagcgga ccttgtttgc
     3181 tcgcgacgac cagcggcgcg gccgagcatg cttgaactca atcgcggcta aggcgcttca
     3241 gcgctctttc catcatcagc gacaaatgct cgacttcatt gctgagcgcg cgaagttccg
     3301 aaaccgggtc gggttcagtg ccaggccggg ctggcgcgct tcgaagcagt gccgcgctca
     3361 aggtcgatgg agcaatcgga taatcgaact ggcagccata atattcgccg ctgttccaga
     3421 cgatcgtcgc gctgaccttg ccggcatcgg ggagttcgac ctggaagacc tggccgacga
     3481 gcattggaac cgatgtttca agaagtgcgc cggtaagtga aagatcatga acggtgacgt
     3541 tctgctcgct cgccgacacg ccgagcttca gctcgcgccg ggccgaacgc cggcggtcgg
     3601 tccgtggcga aacctcttca aattgtgcga gcatcggcat tcagtgcgtc tccttgagag
     3661 gcgggtgcgc acctaatggt taataaagtg taactgtttc ggggacgcgc ggccgaaccg
     3721 ttgcgtcggt tcgccgagcg acgccaagtc tctgctcgtc cgatgctttt ttgcaaaaac
     3781 aatggtgtgc gcaaaaggcc ccagcattcg cgcgagccgc tgctcaactc gcaaagagcc
     3841 ttgctcgttc gtgcgacggc ttttcactcg acggaaccag aaatgaggcg cagtactttt
     3901 agtgccatga cgaagtccga cgaaacgcac gctctctcgt ggccctggtg ggcgccctgg
     3961 gcgctgcttg ccgtcgcttt gacttcgctc ctgaccgtag gcgcgaccct ctacgacata
     4021 ctttaggcgc tagtggcgga cgcgctgccc ccgccacccg cggcaatcgt catcaccggt
     4081 actgccttgc ccgaagcacg cgcagagcgc gtgtacgcga ccgaccggat cggtcggcgc
     4141 gaaatcgagc aatcaccaag ccatgcactg gatcagcttt tgaaggatgt ccccggggtc
     4201 cagctgttcc ggcgctccga ttcgaccagc gggcatccga cgagccaagg
//
LOCUS       DASRBJ010000138         2983 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_369043,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000138 DASRBJ010000000
VERSION     DASRBJ010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2983
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369043"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..641)
                     /locus_tag="VE968_03920"
     CDS             complement(<1..641)
                     /locus_tag="VE968_03920"
                     /inference="COORDINATES: protein motif:HMM:NF012879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HZU51002.1"
                     /translation="MKLRVVAASLLLCSSMPLLAEQPLLRQSNHWVQDYTGRKADPGI
                     RFGTLPNGLRYAIMHNETPSQGVAMRMRIGSGAIEERDDEQGLAHFIEHMAFRGSTNI
                     ADGEVVHMLERQGLQFGPDTNAFTAQDETVYMFNFPRADATALETGLKLFREIGERLT
                     LAPAAIDAEKGVVLSEERLRDTPGYRAGVASMATILDGTRAISRWPIGKVATI"
     gene            complement(758..913)
                     /locus_tag="VE968_03925"
     CDS             complement(758..913)
                     /locus_tag="VE968_03925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51003.1"
                     /translation="MYPNVHFLTRQAARERLAARRALTEAARDRHLALADDYSKRADA
                     ARAAVEA"
     gene            complement(1026..2123)
                     /gene="lptG"
                     /locus_tag="VE968_03930"
     CDS             complement(1026..2123)
                     /gene="lptG"
                     /locus_tag="VE968_03930"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HZU51004.1"
                     /translation="MINFSFFPSRRLALYMVRLFLTRSLSVLIALVLVLMTLDLLGES
                     GKILAVPGNTDADLWRYVSYRLPMLTSRFLPFSVLLGTLIAFVSLNQNSEVVAMKASG
                     LSAHQILAPLIVASIGLAAILFAFNEGVVVNSTRVVTAWSDNDYKPVPQANGTLTNVW
                     VMSGDDLVRARSAGGKPFTAQGLTIYDRSGGNLQRVIHADRAIPSPQSNDWLLQKVSI
                     YDANMSVVQHLPSMHAMPGVTADQLKLAKVDPTELDYWTLKRRIRELEIAGRPTDEAR
                     AGLAHKISQPLSILLMPLLAGIAAFGLARSGQVLMRAVGGMALGFAYFVVDNFSLAMG
                     NAGTYPPLVAAWAPFFLFLLIGETVLIRTEE"
     gene            complement(2120..>2983)
                     /locus_tag="VE968_03935"
     CDS             complement(2120..>2983)
                     /locus_tag="VE968_03935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HZU51005.1"
                     /translation="VILNVFIVGYLQPYTRYRYEGLRFDLNSGALGAAIKVGEFNKLG
                     KRITLRIDRSENNGTQLHGIFVESDDGKGNVVAATALHGRFLSTDDPDKILFRLTKGR
                     LVQSNPKFATPRTLAFDSYDLPVSLPTTSQFRGRASGESEELYLDELWRIGYGGEGRT
                     HAERIAAEAHFNYRLVEVLMMFMLPLLAVALAIPPKRSSSALGIFISILIVVAYHKVN
                     QYADASAAIGRLDPTLALWVPLVILASLIIWMYHVLAHKPGGQPIGALEWFFAGIAKR
                     IKSLLPKPRTT"
BASE COUNT          632 a          854 c          927 g          570 t
ORIGIN      
        1 ttgatcgtcg cgaccttgcc gatgggccag cggctgatcg ctcgcgttcc atcgagtatc
       61 gttgccatgc tcgcgacgcc ggcacgatag cccggcgtgt cacgaagtct ttcctcggaa
      121 agaaccacgc ccttttcggc gtcgatcgcg gcaggagcaa gggtcaggcg ctcgccgatt
      181 tcgcgaaaca gcttgagccc ggtctcgaga gcggttgcgt cggccctagg gaagttgaac
      241 atgtacaccg tctcgtcctg cgcggtgaac gcgttcgtgt ccggaccgaa ctggagcccc
      301 tggcgctcga gcatgtgcac gacttcgcca tccgcgatgt tggtgcttcc gcgaaaagcc
      361 atgtgctcga tgaaatgggc aagcccttgc tcgtcgtcgc gctcctcgat tgcacccgag
      421 ccaatgcgca tgcgcattgc gacgccttgg ctcggcgtct cgttgtgcat gatcgcgtag
      481 cgaaggccat tgggaagcgt accgaagcga atgccgggat cggccttccg cccggtataa
      541 tcctgcaccc agtggttgga ctgcctcaga agcggctgct ccgcgagcag tggcattgat
      601 gaacaaagaa gtagtgacgc agcaacaaca cgcaatttca tggacaactc ccccgggccg
      661 acccggagca gcagattggc ttaactaacg gtaattgcaa gaaaaaatcc gactgaacaa
      721 aagatcggtc ggaaatcgtt ggcgccagtg gcctaggtca ggcctcgact gctgcccgcg
      781 ccgcgtccgc gcgcttggaa tagtcatccg caagagcgag atgacgatcg cgcgccgcct
      841 cggtcagtgc tcgcctcgcg gcgagccgct cacgcgctgc ctggcgcgtc aggaaatgca
      901 cgttcggata caagccaagc ctccccaaca aagccgctag cgcatgttcc atatcgaaaa
      961 cggcactgat gcaagcttta ttgtgcgttg atcttcggga gacgaacgac ttttaaatca
     1021 aacacttatt cttcggttcg aatgagaacg gtctcgccga tgagaaggaa caggaagaag
     1081 ggggcccagg ccgcgacgag cggcgggtag gtcccggcgt ttcccatggc gaggctgaag
     1141 ttgtcgacca cgaaataggc aaaaccaagc gccattccac cgacggcacg catcaggacc
     1201 tgacccgatc gcgcaaggcc gaatgccgca atgccggcga gaagtggcat gagaagaatg
     1261 gaaagcggtt gcgagatctt gtgggcaagt ccggcgcgag cctcgtccgt cggccggccc
     1321 gcgatttcga gctcccggat gcgcctcttg agcgtccaat agtcgagctc ggtcgggtcg
     1381 accttggcaa gcttcagttg atcggcggtt accccgggca tcgcatgcat cgaaggcaag
     1441 tgctgaacca cgctcatgtt cgcatcgtag atgctgacct tttgaagcag ccagtcgttg
     1501 ctttggggcg agggtattgc tcggtcggcg tgaatgacgc gctgaagatt gccgccgctt
     1561 cgatcataga tcgtgagccc ttgcgcggtg aacggcttgc caccggcgga gcgtgcgcga
     1621 acgaggtcat cgccgctcat cacccagacg ttggtaagcg tgccgttcgc ctggggcacc
     1681 ggcttatagt cattgtcgct ccatgcggtg acgacccgcg ttgaattgac cacaacccct
     1741 tcgttgaacg cgaagaggat cgccgcaagg ccgatgcttg caacgatgag tggcgcgagg
     1801 atctggtggg ccgaaagacc cgaagccttc atcgcgacga cttcgctgtt ctggttcaag
     1861 ctgacgaagg cgatgagcgt tcccaggaga accgaaaagg ggaggaagcg cgacgtaagc
     1921 atcggcagac ggtaggaaac atagcgccag aggtcggcgt cagtatttcc aggcaccgcc
     1981 aggatctttc cggattcgcc gagaaggtcg agcgtcatca gaaccagcac gagcgcgatc
     2041 aggaccgaaa ggctgcgcgt caggaagagg cggaccatgt agagcgccag tcgacgcgac
     2101 gggaagaagc tgaagttgat catgtcgtcc gtggtttcgg cagcaggctc ttgatgcgct
     2161 ttgcaatgcc cgcgaagaac cattcgagcg caccgattgg ctggccgcca ggcttatgcg
     2221 caagaacgtg gtacatccaa atgatgaggc tcgcgagaat gacgagcggc acccacagcg
     2281 cgagcgttgg atcgagcctc ccgatcgcgg cactggcgtc cgcatattgg ttgaccttgt
     2341 ggtaggcgac cacgatcaag atcgaaatga agatcccaag cgccgatgag cttcgcttgg
     2401 gcggaattgc aagcgctacg gcgagcagtg gaagcatgaa catcatgagg acttcgacga
     2461 gccggtagtt gaaatgcgcc tcggcggcga tccgctcggc gtgcgtacgt ccttcgccgc
     2521 catatccgat ccgccacaat tcatcgagat agagctcttc cgattcgcct gatgcgcggc
     2581 ctcggaactg gctcgtcgtt ggcaggctga cgggcaggtc atagctgtca aaagcgagcg
     2641 ttcttggagt agcgaacttg ggattgctct gaacgagccg tcccttcgtt agtcgaaaca
     2701 ggatcttgtc cggatcgtcg gtcgaaagga aacggccgtg aagcgcggtt gccgcaacca
     2761 catttccctt gccgtcgtcg ctctcgacga agatcccgtg aagctgcgtg ccattgttct
     2821 cgcttcggtc gatgcgaagc gtaatgcgct tgccaagctt gttgaactcg ccgaccttga
     2881 ttgcagcgcc aagcgctccc gagttgagat cgaagcgcag cccctcgtag cgatagcgcg
     2941 tgtatggctg gagatagccg acgatgaaca cgttgaggat aac
//
LOCUS       DASRBJ010000139         6577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_68705,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000139 DASRBJ010000000
VERSION     DASRBJ010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6577
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68705"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..186)
                     /locus_tag="VE968_03940"
     CDS             complement(<1..186)
                     /locus_tag="VE968_03940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51006.1"
                     /translation="MAHPNLTHRLHGCRKEDVYVAAGARDANLDLAVSHQQPPITLLD
                     EIVKLELDDRLVPGELLR"
     gene            complement(338..1831)
                     /locus_tag="VE968_03945"
     CDS             complement(338..1831)
                     /locus_tag="VE968_03945"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HZU51007.1"
                     /translation="MNDIFIIAGREFRQIAKMRSFWLTLLILPLCFAIGPVVQHLVGN
                     NEASRVMVIDRTGGAEARALEQRVSLDHDRDVLTELSRYVEQHHLEAADRQALWSQHD
                     RWYSDADVEQFIASGGLPLAKARIDRVKASDGPAFEAPANKYKFVAAPSSLAPLPEPM
                     LDSALKPILKPRVKGAEAVDYVIEIPASFGASPLVRLWANRQPAADFMVLLQSVLTRD
                     LRTRYLAAQGLSPRAAATASAIAPALAISTPPPGGGAKESMLVRSILPLAAAYLLMMS
                     LVLSGSWMLQGTVEERSNKLLETVLACVSPERLMYGKLLGTAGVGIFMIVVWIACGLF
                     AAYATKGAIADFIRPALDPLTSPISVMAMIYFFIVGYVTIATLFLAIGAMSDSMRDAQ
                     GYLMPVIMVILLPISILIQAVLGGNSGGILLEVLTWVPIWTPFTVLARLGIGIPAWEV
                     VGSGILLAAFTAVELLLLGRLFRASLLAQGQRPSLAEVVARMRTAAD"
     gene            complement(1828..2745)
                     /locus_tag="VE968_03950"
     CDS             complement(1828..2745)
                     /locus_tag="VE968_03950"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HZU51008.1"
                     /translation="MSVLALERVSKRFDKVVAVDDLSFTVKQGAVFGFLGGNGAGKTT
                     SLRMVLDIIRPSTGTIRVLGREPGRSNAPEIGFLPEERGLYRNMTALETIAYFGRLKG
                     MSPPDARKEGAALLDRFGLSANSKSTVDKLSKGMAQKVQLATALVNRPKLLILDEPFS
                     GLDPVNQGLLEQEIRNMSQAGATVVFSTHVMQHAERLCDKLLLLARGRKMFEGTLDEA
                     RAQLPARLTVVARTTPALLQGVESAQDCGEAGDGWRRFDVRLKPSVSPGDVLEQCTLQ
                     NFPLRQFEQLHASLHDVFVHIVGATETRP"
     gene            3122..5956
                     /locus_tag="VE968_03955"
     CDS             3122..5956
                     /locus_tag="VE968_03955"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HZU51009.1"
                     /translation="MRSTLLSSALFVSIAAPALGEVPLEQPGRWAQDYTDHKADPAVR
                     FGTLPNGLRYAIMHNETPSDGVAMRMRIGSGSLEEHDDEQGLAHFIEHMAFRGSTNVA
                     DGEAVRMLQRQGLQYGPDTNASTSHDETIYMFNFPKADAAALDTGLTLFREIGDRLSF
                     SPAAINAERGVILSEERLRDTPQFRAIKSEFATVLDGTRAVNRWTIGKDDVLRTATRD
                     RFERFYRANYRPDNATIVVVGKIDPAAVEQQIRARFSDWKPSATPDSVDLGTPTGAKK
                     VGEIIESGVPDSVSINWVAPSDRRADTNALERELLLRRIALTVLNQRLSDIALQPGAP
                     FVGGEASEERSLVHSAAVTSVDVSASPEKWQAALDAVSAAERGLLRDGVQPNELKRAV
                     ATVRTQLENAAANAPTRKSTDIADAIVAMANAEEVFDSPAQDLAFATPILASITPAEV
                     NGALKSAFAARGPILFRSAERLPVSDAQLAEALGAAYERPLGAAVREAAIAWPYTNFG
                     KPSAIVSRTFDSKLGTTTVRFANGTRLLVKPTKFEKDKVAVGVLLGNGRAGVQPDLGR
                     AIWQTQLFAYSGTKKLSTAQITQWAQENSKLISVTLSPGNRAFVLVGGTRPSDLVPQM
                     QLLDAFARDPGFRPEAVQKARSLASMIAGQIDGNAGATYSRAAQAMTVDNDPRFRAIP
                     SDADLARIEPLDLPRILERPLAGQADVVIVGDVTVDQAVNATEETFAAGTGGARVAPV
                     SVHITMPAPGAPVVVEHNGRADQAYYGEYFQLPDYFADPKAGSVGSVASSIISSRLVD
                     TVREQLGITYSPHVEAVSAVDLPGYGYLGITLETPPSNFERIHSLIDAQLRDLAAKLV
                     SADELARAKQPLIETDTKTRETNAYWMGKLAEIARDPRIEAEAVGEPARLLQVTALDV
                     QSLIKKFVAGHQPIVVIAKAKPTSAPATTH"
     gene            6016..>6577
                     /locus_tag="VE968_03960"
     CDS             6016..>6577
                     /locus_tag="VE968_03960"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HZU51010.1"
                     /translation="MRNFLIAFGCVAVSQAASAAPQAGFQLLPVPARIDVSGYGEVKY
                     MPDIATIGYTIRGEGPTSDDAVRAMTSSAARILAAIHVIDATASPKTNDVRVAEVRSP
                     DCKEQSFGPPQLSTGACAISGYVATQTVTLRTGAVKDSGTIVGLIGRAGGLSPRIEGF
                     TVRDSRPQQQQAIAAALADAASKAGAI"
BASE COUNT         1347 a         1949 c         1977 g         1304 t
ORIGIN      
        1 ccggagcagc tccccgggaa cgagacggtc atccagttca agtttaacga tctcatcgag
       61 cagcgtgatt ggtggctgct ggtgcgagac ggcaaggtcg aggtttgcat cacgcgcccc
      121 ggccgcgacg tagacgtctt cttttcgaca tccgtgcaga cgatgagtga ggtttggatg
      181 ggccaacgaa cctatcgcca ggcggtgctc tctggtgact tggttatcga aggggacttg
      241 gcgctgacac gccgcatcag cacctgggct tcgaccaagt attttcgcga acgtgcaacg
      301 gccggtcgtt gcggccgcac gccgtcgggc ccaataatca gtcagcagcg gttcgcattc
      361 ttgcgacgac ttccgcgagg ctcggtctct gtccttgcgc gagcaggctt gctcgaaaga
      421 gccgaccgag cagcagcagt tcaacggccg tgaaagctgc aagaagaatc ccacttccga
      481 caacctccca ggcagggatc ccaatcccga gtcgcgcaag gacggtgaag ggtgtccaga
      541 tcggcaccca tgtcagcact tccaggagga tgccgccgct gtttccgccg agcacggctt
      601 gtatcagaat cgagattggc agcaggataa ccatgatgac gggcatcaag tagccctgcg
      661 catctcgcat agaatcgctc atcgctccta tcgcgaggaa cagggtcgca atggttacgt
      721 aaccaacgat gaagaagtat atcatcgcca tgacactgat gggcgaggtc agcggatcga
      781 gcgcggggcg aatgaagtcc gcgatcgcgc ccttggtagc ataggcagcg aacaatccgc
      841 aggcgatcca gaccacgatc atgaagattc cgacgccggc ggttccgaga agctttccgt
      901 acatcaggcg ctcggggctc acacaagcaa ggactgtctc cagcagcttg ttcgaacgtt
      961 cctcaaccgt gccctggagc atccagctgc cggagagcac caggctcatc atcagtagat
     1021 aggcggctgc aagcggaaga attgaccgga ccagcatcga ttcctttgca ccgccgccgg
     1081 gcggcggtgt tgaaatcgca agggccggtg caatagcgct cgcggtggcg gcggcgcgtg
     1141 gtgaaagccc ctgggccgcg aggtagcgcg tgcgcaagtc gcgcgtgaga accgattgga
     1201 gcagtaccat gaagtctgct gccggctggc gatttgccca cagacggacg agtgggctag
     1261 cgccgaagct cgctggaatt tcaatcacgt agtcgacggc ctcagctcct ttgacccgtg
     1321 gtttcagtat cggcttcagt gcgctgtcga gcatcggctc gggcagcggc gcgagcgatg
     1381 agggggcggc aacgaacttg tatttgttcg ccggtgcttc gaaggcgggc ccgtcactcg
     1441 cctttactcg gtcgatgcgc gctttggcca aaggaagccc acccgacgca atgaactgtt
     1501 ctacgtcggc gtcactgtac cagcggtcat gctgtgacca gagcgcctgc cggtctgccg
     1561 cttccagatg atgctgctcg acatagcgtg aaagctcggt cagcacgtcg cgatcatggt
     1621 cgagcgaaac gcgctgctcc aaagcacgag cttcggcccc acctgttcga tcgatcacca
     1681 tgacgcgact tgcctcgttg ttcccgacga ggtgctgcac taccggtccg atggcgaaac
     1741 agagtggcag gataagaagc gtcagccaga aactgcgcat tttcgcgatc tgacggaact
     1801 cgcgccccgc aatgatgaag atgtcgttca tgggcgagtc tcggtcgctc cgacgatgtg
     1861 cacgaagaca tcatggaggc ttgcatggag ctgctcgaat tggcgcagcg gaaaattttg
     1921 caaggtgcat tgctcaagaa catcgcccgg cgaaaccgaa ggcttgagcc gaacgtcgaa
     1981 gcgccgccag ccgtcgccag cctcgccgca gtcctgcgcg ctttcgacgc cctgaagcag
     2041 ggcaggggtg gttctggcga cgacggtgag acgcgccggc aactgcgctc tcgcttcgtc
     2101 gagcgttcct tcgaacatct tacggccgcg cgcgagaagc aaaagcttgt cgcaaagccg
     2161 ctcagcatgt tgcatcacgt gggtcgagaa aaccacggtc gcgcccgcct gtgacatgtt
     2221 acggatttct tgctcaagaa gcccctgatt gactggatca agacccgaga atggctcgtc
     2281 caggatcaag agtttgggac gattgacgag cgcggtcgca agctgaacct tttgcgccat
     2341 gcccttcgac agcttgtcga ccgtcgactt cgagttggcg gataggccga aacggtcgag
     2401 aagtgccgca ccttccttcc tcgcgtccgg tgggctcatt cccttcagtc ttccgaaata
     2461 cgcaatcgtc tcaagcgcgg tcatgttgcg gtagagtccg cgctcctcgg gaaggaagcc
     2521 aatttcaggc gcgttcgagc ggccgggttc gcggccgagc acgcggatcg tgccggtgga
     2581 cgggcgaatg atgtcaagaa ccatcctgag ggatgtcgtc ttgccggcgc cgttgccgcc
     2641 tagaaagccg aagaccgcac cctgctttac cgtgaaactg agatcgtcaa ccgcgacaac
     2701 cttgtcgaag cgcttggata cgcgctccaa agccagcaca ctcacacgcg atctcccctg
     2761 ctggggcaat cttattgcga ttgatgttcg gaaccgcaat gccggttcag gctacgtgca
     2821 ctgacgaggc gagttgtacc tacggtcctt atcagcaggc acttttcgct agaatcgcaa
     2881 tgaggtcgcg ccttgtttca tcgcgttgcg gatgcgtgac aacgagttgc cgcgccagaa
     2941 ttaagttagc aaagacttac gttcttgctc tactccgatt agccatggaa acgagccgac
     3001 cattcttcgt cacgtggctc aattcgttga gatatttgac tgggaaccga ctgctttcgt
     3061 aatcaccgaa ctctcagtag cctttgtgag tcccgaaatc atgctttgta actctgtgct
     3121 gttgcgttcc acgctgctga gttctgcgct gttcgtttca attgctgctc ccgcacttgg
     3181 tgaggtgccg ctcgagcagc caggacgttg ggcgcaggat tatacggatc acaaggcgga
     3241 ccccgccgta cgcttcggaa cgctaccgaa cggcctgcgc tatgcgatca tgcacaacga
     3301 gacgccgagc gacggcgtcg caatgcgcat gcgcatcggc tcaggatccc tagaagagca
     3361 cgacgacgaa caggggcttg cgcatttcat cgaacatatg gcgttccgcg gaagcaccaa
     3421 tgtcgcggac ggggaagccg tcaggatgct gcagcggcag ggcttgcaat atggtcccga
     3481 cacgaatgct tcaacgagcc atgacgagac catttacatg ttcaacttcc cgaaagccga
     3541 tgccgcggca ctcgacaccg gcctcactct atttcgcgaa attggcgatc gactgagttt
     3601 ttcaccggcg gcaatcaacg cggagcgcgg cgtcatcctt tcggaagagc gcctccgcga
     3661 cacgccccag tttcgtgcaa taaagtcgga gttcgccacc gtgcttgacg gcacgcgggc
     3721 ggtgaatcgc tggacgatcg gcaaggatga cgtgcttcgg actgccacac gtgatcgctt
     3781 tgagcgcttc taccgtgcca attaccggcc ggacaatgca acaattgtgg tggttggcaa
     3841 gatcgatccg gctgccgtcg agcaacaaat ccgtgcacga ttttccgatt ggaagccttc
     3901 cgcaactccg gattcggtcg atcttggaac gcccaccgga gcgaagaagg tgggcgagat
     3961 catcgagagc ggcgtcccgg acagcgtttc aataaattgg gttgctccgt cggatcgccg
     4021 tgccgatacc aatgctctcg agcgcgagct cctgttgagg cgcattgcgt tgacggtgct
     4081 caatcaacgc ctctccgaca tcgctctcca gcctggtgct ccctttgttg gcggcgaagc
     4141 aagcgaggaa cgctctctcg tgcactcggc tgctgtcact tcggttgatg tctcggcttc
     4201 gccggagaag tggcaagccg ctctcgacgc ggtgagtgcg gcggaacgcg gcttgcttcg
     4261 ggacggtgtc caacccaacg agctcaagcg cgctgtcgca acggtccgga cgcagctcga
     4321 gaatgctgcg gctaatgctc caacacgtaa atcaacggac atcgccgacg cgatcgttgc
     4381 aatggcgaat gcggaagagg ttttcgacag cccggctcag gatctcgcat ttgcaacgcc
     4441 catcctcgca agcatcacgc cagcagaagt gaacggcgcg ctcaagagcg cattcgccgc
     4501 gcgtggcccg atattgttcc gctcggccga gcggcttcca gtgtcggacg cgcaactcgc
     4561 tgaggctctt ggtgccgctt acgagcgacc actcggcgcc gccgtcaggg aggccgcgat
     4621 cgcctggccg tacacgaact ttggaaagcc gagcgcgatc gtctcgagga ccttcgacag
     4681 caagctcgga acgacgaccg tccggttcgc gaacggaacg cgcctgctcg tcaaaccaac
     4741 caaattcgag aaggacaagg tcgccgtcgg tgttctcctt ggaaatggcc gcgcgggcgt
     4801 tcaacctgat cttggccgtg ccatttggca aacccagctg tttgcttatt caggaacgaa
     4861 aaagctctcg acagcgcaga ttacacaatg ggcgcaggag aacagtaagc ttatttccgt
     4921 aaccctctcg ccgggcaacc gcgctttcgt tttggttgga ggaactcggc cgagcgatct
     4981 cgtgccgcag atgcaattgc ttgatgcttt cgcgcgtgat ccggggttcc ggcccgaagc
     5041 cgtgcagaag gcgcgatcgc ttgcctccat gattgctggg cagatcgatg gaaatgccgg
     5101 cgctacctat tcgcgagctg cgcaagcgat gaccgtcgac aatgacccac gctttcgtgc
     5161 cattccaagt gacgcggatc ttgcgcggat tgaacccttg gatctccccc gaatcctcga
     5221 gcgaccgctc gctgggcagg cggacgttgt gatcgtcggc gacgtcactg tcgatcaggc
     5281 ggtgaatgcg accgaggaga cgttcgccgc aggcaccggc ggcgcacgtg tcgcccccgt
     5341 ttcggtccac atcaccatgc ctgctcccgg cgcgccggtc gtcgtcgaac acaatggccg
     5401 agcggatcag gcatattacg gcgaatattt tcagcttccc gactatttcg cggaccctaa
     5461 agccggttcc gttggcagcg ttgcttcctc gataatctcg agccgcttgg tcgatacggt
     5521 tcgcgagcag ctcggcatta cttattcacc gcatgtcgag gcagtgagcg cggtcgatct
     5581 tccgggctat ggctatcttg gaataacgct cgagactcca ccatccaatt ttgaaaggat
     5641 ccattctctc atcgatgctc aactgcgcga ccttgcagca aagctggtca gcgccgatga
     5701 acttgcccga gcgaagcagc ctctcatcga aacggataca aagacccgcg aaacgaatgc
     5761 ctactggatg gggaagcttg cggagattgc tcgtgatcct cgcatcgaag cagaagcagt
     5821 cggcgaacct gcccgccttt tgcaagtgac ggcgctcgac gttcagtcac tgatcaaaaa
     5881 attcgtcgcg gggcaccagc cgatagtcgt cattgcgaag gcaaagccca caagcgcgcc
     5941 tgcaacgacg cactgacagc tcgcgcgacg cgcgataaat aggctcaacg tgggccgttc
     6001 ttggggagac tgttcgtgcg taatttcttg atcgcgtttg ggtgcgttgc ggttagccaa
     6061 gctgcatcgg ctgctccgca ggcgggcttt cagctgctgc cagtgcccgc caggattgat
     6121 gtgagcggct acggcgaggt gaagtacatg cccgatattg ccacgatcgg ctatacgatt
     6181 cgcggtgagg gcccaacgag tgacgacgcc gttcgagcaa tgacgtcttc cgccgcgcga
     6241 atcctggcgg caatccatgt gatcgacgcg accgcgtcac cgaaaacaaa cgacgtcaga
     6301 gtggcggaag tgaggagccc cgattgcaag gagcagtcat tcggtccgcc gcagctttca
     6361 accggagcat gcgcaatatc gggttacgtc gcgacgcaga cggtcacgct tcggactggc
     6421 gccgtcaagg attcaggaac gatcgttgga ctgatcggtc gcgccggagg cttgagccca
     6481 cgcatcgaag gcttcacggt ccgggattct cgtccgcagc aacagcaggc aatcgctgcg
     6541 gccttggccg acgcggcatc gaaggcgggc gcgattg
//
LOCUS       DASRBJ010000140         2366 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_524632,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000140 DASRBJ010000000
VERSION     DASRBJ010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2366
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_524632"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..791)
                     /locus_tag="VE968_03965"
     CDS             complement(<1..791)
                     /locus_tag="VE968_03965"
                     /inference="COORDINATES: protein motif:HMM:NF013703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HZU51011.1"
                     /translation="MRRGWCPTNGILMDAKAIVDHERDAWRLELRNTLALAWPLILAN
                     LTQQAIQATDVLLMGRIGPSQLAAATLALNLTFTLNLLILGLVTASSPMIASALGQRF
                     NAVRHVRRTFRAGLWLILLTLPFYWIALWHVSLIMRLLGITNDLASQGQTFLRAYMWC
                     TAPWLLFQLLRNFVSALERPRVVLWLSLLGIGLNALLSWSLIFGHFGLRALGLVGGGL
                     GSTLTWMILCVMLFAIVQTDRTFRRFHLFGHWWRFDGQRTRAMVKL"
     gene            869..>2366
                     /gene="sppA"
                     /locus_tag="VE968_03970"
     CDS             869..>2366
                     /gene="sppA"
                     /locus_tag="VE968_03970"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HZU51012.1"
                     /translation="MKFVRAIWKLLVGIKDALVLLLLLLFFGSLYGALSARPAPVREG
                     VLNLDLNGSVVEQPSRRDWSEVAGSARPQEYRLRDLVEALDKAREDSRVKAVALDLDG
                     FEGGGETAVADLADAVRKVRQAGKPVIAYGVGYTNSSYALASAASEIWLNPLGGVLIT
                     GPGGSGLYYKGLLDKLGVTANVYRVGTYKAAVEPYIRNDMSPAAKQNALALDEARLEA
                     WKQEIKIARPKANIDLFLGNMNGAIAAAGGDMAKAALQAGLVDHVGDRRDFEARLAQL
                     GGGAGANGNPFKEVKLSSYVADVVPQKPIGPIGIVTIAGMIVDGKAGPGTAGGDTIAD
                     EIHDGIHNKGIKALVVRVDSPGGSVLASERIRQALLEAKSRRIPVVVSMGSVAASGGY
                     WVSTPGDFIFAEPSTITGSIGVFAVLPSFQGTLQKLGVGADGVKTSPLSGEPDLLKGP
                     SPEANQLLQTGVNAMYARFLGVVAAARHKTPQQVDQIAQGRVWDGGTAR"
BASE COUNT          502 a          705 c          738 g          421 t
ORIGIN      
        1 agttttacca tcgcccgcgt gcgctgcccg tcgaacctcc accaatgtcc gaacagatga
       61 aatctccgga acgtccggtc cgtttgaacg atggcgaaca gcatcacgca caagatcatc
      121 caagtgagag tacttccaag acctccaccg acgaggccaa gagcccgcag cccaaaatgg
      181 ccaaagatca gcgaccagct gagcagcgcg ttgaggccga tcccgagaag acttagccac
      241 aacacgacgc gcgggcgctc gagagcagag acgaagttcc ggagaagctg gaagagaagc
      301 caaggggcag tgcaccacat ataggcacga aggaaagtct gcccctggct cgcaagatca
      361 ttcgtgatgc caagtaggcg catgatcaag ctaacgtgcc atagagcgat ccagtagaag
      421 ggtagcgtca gcaggatcag ccacaagccg gcgcgaaacg ttcgcctgac gtgccgcacg
      481 gcattgaagc gctgacccag tgcacttgca atcattggcg acgaggcagt taccagcccc
      541 aggatcaaca ggttcaacgt gaaggtgagg ttgagggcca gcgtcgccgc ggcaagctgg
      601 ctgggcccga tgcgccccat cagcaagaca tccgtcgcct ggatcgcctg ctgggttaga
      661 ttggcaagga tgagcggcca ggcgagcgcc agggtgttgc gtagttcaag ccgccacgca
      721 tcgcgttcgt gatcgacgat cgccttcgca tccatgagga tgccattggt cggacaccag
      781 ccgcgacgca atgcggatcg tgcgactatc tcgcaatcgc gcttcttctg cgctagcgaa
      841 ccttccgagc tactgtagag gcaccgaaat gaagttcgtg cgcgcaatct ggaaactgct
      901 tgtcggcatc aaggacgcgc tcgtcctgct cctcctgctc ctgttcttcg gcagtctcta
      961 tggagcattg tcagcgcgac ccgcaccggt gagggagggc gttcttaatc ttgatctcaa
     1021 cggcagcgtc gtcgagcagc cctcgcgccg cgattggtcc gaagtcgccg gctcggcacg
     1081 gccgcaggaa tatcgcctac gtgacctcgt cgaggcactc gacaaagcga gggaagacag
     1141 ccgagtgaag gctgtcgcgc ttgatctcga cggcttcgag gggggcggcg aaacggcagt
     1201 cgctgatctt gcggacgccg ttcggaaggt tcggcaagct ggcaagcccg tcatcgctta
     1261 tggtgttggt tatacgaatt cgagctacgc gctcgcctcc gcggcatcgg agatctggct
     1321 caatcccctt ggtggcgtgc taataactgg ccccggcggt tccgggctct actacaaagg
     1381 tctgctcgac aagctcggcg tgacggcaaa cgtctaccgg gtcggcacct acaaggcagc
     1441 ggtcgagccg tacattcgca atgacatgtc accggcagca aagcaaaacg cgcttgccct
     1501 tgacgaggcg cggctggaag cgtggaagca agagatcaag atcgcccggc caaaggcgaa
     1561 catcgatctg tttcttggca atatgaacgg cgcaatcgcc gctgctggcg gcgacatggc
     1621 gaaagcggcc cttcaagcgg gacttgttga ccacgttggc gaccgccgtg acttcgaagc
     1681 gcgtcttgct cagctcggcg gcggcgcggg cgcgaatggc aatccgttca aggaagttaa
     1741 gctctcctcg tacgtggcag acgtcgtccc gcaaaagccg attggcccga tcgggatcgt
     1801 cacgattgcc gggatgatcg tcgatggaaa agcgggcccg ggcacagcgg gcggcgatac
     1861 gatcgccgac gagatccacg atggaattca caataagggc atcaaggcgc ttgtcgtcag
     1921 agtcgacagc cctggagggt cagtgcttgc ctcggagcgc atccgccaag cgctccttga
     1981 agcgaaatca cggagaattc cggtcgtcgt gtcgatgggg agcgtcgccg cttctggtgg
     2041 ctattgggtg tcgacgcctg gcgacttcat ttttgccgag ccgtcgacga tcacgggttc
     2101 gattggcgta ttcgccgtgc tccccagctt ccagggcacg cttcagaagc tcggagtcgg
     2161 cgcggatgga gtaaagacct cgccactttc aggcgagccc gacctcttga aggggccttc
     2221 cccggaagca aaccagcttc ttcagaccgg cgtcaatgca atgtacgctc gcttcctcgg
     2281 cgtggtcgcc gccgcgcggc acaagacacc ccagcaggtg gaccagatcg cccaagggcg
     2341 agtgtgggat ggcggaactg cgcgcc
//
LOCUS       DASRBJ010000141         4510 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_524702,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000141 DASRBJ010000000
VERSION     DASRBJ010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4510
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_524702"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..928)
                     /locus_tag="VE968_03975"
     CDS             complement(<1..928)
                     /locus_tag="VE968_03975"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HZU51013.1"
                     /translation="MARALFLATAGMAALTLNTASEGRQAVTGAASPPQAPQRIGTTS
                     YDAGYFAPFAPRTAYDIVQHVPGFQLDLGSTQTATGSVDVRGFAGTAGNVVINGQRPS
                     TKAETLDITLQRIPAPRVVRVELSPGDRFGSDYAGKSQVLNIILSDQSGIDANITAGT
                     KRWFTGYVNTDIQGSALIRRQASTINLSGGTGRNRQLEEGTDVLTDLATGQRVEFRRK
                     HNSYFNRDPFLSGAYGLEHGRDDALHFNVRWQPSTFDLFQSNRVSPSTGPQHDDSLLQ
                     NYRDPLLELGADITRPFADGAIKLVALETRRKR"
     gene            complement(1047..1922)
                     /locus_tag="VE968_03980"
     CDS             complement(1047..1922)
                     /locus_tag="VE968_03980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51014.1"
                     /translation="MTRSLVFIGALLAASFAGSSASLADAGPMIRFTLEPQHGNPTKI
                     HANFRHQGSRGDDNQWSNGFMPSDLIGLEVSSFHGSGTRPIHFSIVREAGRLDCSGNG
                     GHEFATGTCRFTPDPGFGELLVRSGAGRPTYDESLGLTAVNARRELVEALTAAHYPAP
                     RINDLMALAALGVDGRYIADLSRAGYRPPNLQKLVEFKALGITPAWIGGFVRIGYANV
                     PGDGLVQLRALGISPEYILGFEHLGYRNLPVNTLVQLKALGITPEFVRSVATAGQPMP
                     PVNKLVEMKVFSRRH"
     gene            complement(2026..3927)
                     /locus_tag="VE968_03985"
     CDS             complement(2026..3927)
                     /locus_tag="VE968_03985"
                     /inference="COORDINATES: protein motif:HMM:NF017390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HZU51015.1"
                     /translation="MIVLVGIALKSLLLAGVTLGLLELMKGRSAAERSWVAHIGLLAL
                     VIIAFAPLVLPEWPVETPAIFSQSAPAATHVVNANIVAPGSLPRASLHDVDTPAKAGA
                     MLPAPTLSTTAAITALYAVPAAVLLIITFLALLRLFALRARADVLVDGHWLSALAHAQ
                     RRMGFKHGTALLTSNELASPVSWGLMRPVILLNKRAVEATGEAEAIIAHELAHVARMD
                     WIKLLLARFATALFWFNPLVWLLAREAHQLREEAADDTVLAADITDTDYAQLLVGVAR
                     HECPGLLLGAHGVAPSKSSLARRVARVLDGKSARGPVARSFAVGVFAGAILVAAPLAA
                     ITVTPGVSKLQKSSSPEFASSERAAPEYADTSDVPTDLPHLIAKGVSTSVTTATAAIA
                     PHVVKAQAPTMRVVAPNGATVESSNGIQVATAPNGARVTVYPVDSTGRRRVVAVAASG
                     ATAVSYADVDADEEGDADDHVSNAMGHSKHDAMVETAIEMKAMGLTPEYAAAIRSASP
                     ALRSATLSEVLELKSVGVTPEYIREMTSAGFANLRSSQIEEARAVGLSAAYAQAIRST
                     GIPVTFDELVELRVTGIRPDELARMKAAGELTFGKPVRAHGSHLSRTPRPPQPPQPPQ
                     RPWDDPDGG"
     gene            complement(3924..4307)
                     /locus_tag="VE968_03990"
     CDS             complement(3924..4307)
                     /locus_tag="VE968_03990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003043189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HZU51016.1"
                     /translation="MLSKLPPRERQIVDLLYERGPLAVSDICDALPVRLSGSAVRAML
                     KRLEDKGFVQRSESERGYLYSPLLSDTVAKKSALSEIVRVFFNGSPASAASALLGMSD
                     KLKEDELNELEQMIARARKAKGDQP"
BASE COUNT          905 a         1296 c         1401 g          908 t
ORIGIN      
        1 gtcgtttgcg gcgcgtttcg agtgcgacaa gcttgattgc tccatcggca aacggccgag
       61 tgatatcggc gccgagctca aggagcggat cgcggtagtt ctggagaagg ctatcgtcat
      121 gctgcggccc agttgaaggc gagacgcggt tggactggaa caggtcgaag gtgcttggct
      181 gccaacgcac gttgaaatga agcgcgtcat cgcggccgtg ctcgagcccg taagctcccg
      241 aaagaaacgg gtcccgattg aagtagctgt tatgctttcg ccggaactca acacgttggc
      301 cagtcgcaag atcggtgagg acgtctgtcc cttcctcgag ctgtcgattg cgtccagtgc
      361 ctcccgagag gttgatggtc gacgcctggc gccggataag tgcagatcct tggatgtccg
      421 tgtttacata gcccgtaaac caacgcttcg ttccggcggt tatgttcgcg tctatacccg
      481 actgatccga taagatgatg ttcaggacct ggcttttgcc ggcataatcg gatccgaacc
      541 ggtcaccggg actgagttcg acgcgcacga ccctgggggc ggggatccgc tgaagagtaa
      601 tatcgagcgt ttcagcttta gtgctggggc gctgcccgtt gatgacgacg ttcccggccg
      661 ttccagcgaa cccccgaacg tcgaccgatc ctgtcgctgt ctgagtgctg ccgagatcga
      721 gctgaaaccc gggcacgtgc tgaacgatgt cgtacgcagt gcgcggtgcg aacggcgcga
      781 aatagcccgc gtcgtagcta gtggtaccaa tgcgctgcgg cgcttgggga ggggacgccg
      841 cgccggtcac ggcctgcctt ccttcgctgg ccgtgtttaa cgtaagcgct gccatcccgg
      901 ccgttgcgag gaacagcgcc cgagccacgg ttctcccctt ttttgtcgtg ttggcgacta
      961 actgacccgg tgtgttgccg cgagttggtg tcgatcaatc ggccagtggt tcgacgaacg
     1021 cggcttgtgc gggcaccaac gacagttcag tggcggcggg agaagacttt catttcgacg
     1081 agcttgttga ccggaggcat cggctgacca gctgttgcaa cggaacgcac gaactccggc
     1141 gtaatcccca gtgcctttag ttggacgagc gtgttcacgg ggaggttgcg atagccgaga
     1201 tgctcgaagc ccaggatata ctcaggactg attccaagcg ctcgcaattg caccaagccg
     1261 tcgccgggaa cattggcata gccgatccgg acgaacccgc cgatccacgc gggagtaatc
     1321 ccaagtgctt tgaactcgac gagtttctgg aggttcggcg gacgataacc agctctcgac
     1381 aagtcagcga tgtagcgacc atcgacccca agagcagcta gagccattag atcgttgatc
     1441 cgtggagcgg gataatgagc ggcggtcaac gcttcgacta actcccgccg agcattcact
     1501 gcggttagtc caagggactc gtcataggtt ggccggccag cgccgctcct cacgagcagc
     1561 tcgccgaagc ccgggtcagg cgtaaagcga caagtacccg tcgcgaattc gtgcccgccg
     1621 ttgcccgagc agtcaagccg gcccgcttcg cgaactatgg agaagtgaat cggccgcgtg
     1681 ccggaaccgt gaaaggagga cacctccaag ccgataaggt ccgagggcat gaagccgttc
     1741 gaccactgat tatcatcgcc ccggcttccc tggtgacgaa agtttgcgtg gatcttggtt
     1801 ggattgccgt gctgcggctc gagcgtgaat cttatcatcg ggccagcgtc ggcaagggac
     1861 gccgaggaac ccgcgaagct cgcggcaagc agtgctccga taaagacgag agaacgggtc
     1921 attgacgatc tccttttcac tgtattcggg caaagttcgc ccgtccgtcg acgatcgacg
     1981 gtaagaaatg ccgttaatct tgcgatcagt gtctcggtgt cgcggtcatc cgccgtcagg
     2041 atcgtcccaa ggtcgctgtg gcggttgcgg cggctgcggc gggcgcggcg ttcgcgacaa
     2101 atgcgatcca tgagcgcgaa caggtttgcc gaacgtcagt tcgccggccg ctttcatgcg
     2161 cgcaagctca tcggggcgaa tcccggtcac gcgaagttcg acgagttcgt cgaatgtgac
     2221 gggtatcccg gtcgaccgga ttgcttgagc ataggctgcg ctcaacccga cggcacgtgc
     2281 ttcctcgatc tgcgaggaac gaaggttcgc aaatccagcg cttgtcattt cccgaatata
     2341 ctcgggggtt acgccgacgg acttaagttc aaggacctcg ctaagtgtcg ccgatcgaag
     2401 tgctggagaa gctgaccgaa tggccgcagc atattcggga gtcagcccca tggccttcat
     2461 ttcgatcgcc gtttccacca ttgcgtcgtg tttcgaatga cccattgcat ttgaaacatg
     2521 gtcgtcagca tcaccctctt cgtcggcgtc gacgtcggcg tagcttacgg cggttgcgcc
     2581 gcttgcagcg accgcgacaa cgcggcgtcg gcctgtggag tcgaccggat agaccgtcac
     2641 tctcgcgccg ttgggagccg tggccacctg aattccattg gagctttcaa cggtcgcacc
     2701 atttggtgcc acgacgcgca ttgtaggcgc ctgcgctttg acgacatggg gagcgatggc
     2761 cgccgttgcc gttgtcaccg acgttgagac gcccttggca ataaggtgcg gcaagtcggt
     2821 tggcacatcg ctcgtgtcgg catattcggg agctgcgcgc tcgctgctcg cgaattcggg
     2881 cgatgaagat ttttgcaact tcgatacgcc tggcgtgacg gtgatcgcgg caagcggagc
     2941 tgcgaccaga attgcgccag cgaagactcc gactgcgaac gaacgtgcga ctgggccgcg
     3001 ggctgacttg ccatcgagaa cgcgcgcgac gcgccgcgcg agcgaacttt tggatggcgc
     3061 gacgccgtgc gcgccaagca gcaatccggg acattcatga cgcgccacac caacaagcag
     3121 ctgcgcatag tcggtgtcag tgatgtcagc ggcgagaaca gtgtcgtcgg ccgcttcttc
     3181 gcgcaattga tgtgcttcgc gcgcgagcag ccaaactaag ggattgaacc agaacagagc
     3241 ggtggcaaac ctggcaagta gaagcttgat ccaatccatc cgagcgacat gggcaagctc
     3301 gtgcgcgata atcgcttccg cctcgcccgt cgcttcaacg gcgcgtttgt tgagaagtat
     3361 tacgggtcgc atcaggcccc agctcaccgg cgaagcgagt tcgttactcg tgagcaatgc
     3421 cgttccgtgc ttgaatccca tccgacgctg agcatgcgca agagcgctca gccagtgtcc
     3481 gtcaacaagg acatccgccc gcgcccgaag cgcgaacaac cgcaaaagtg ctaggaaggt
     3541 gatgatcaag aggaccgctg cggggactgc atagagtgcc gtgatggcgg cagtcgtgct
     3601 gagagtgggt gccggcaaca tcgctccagc ttttgccggc gtatctacat cgtgcagact
     3661 tgcacgcggc agcgatcccg gggcgacgat attggcattc acaacgtgcg tcgccgcggg
     3721 cgcggactgg ctgaaaattg cgggcgtttc gactggccac tccggtagaa ccagcggggc
     3781 aaacgcgatg atgacaagcg cgagcaggcc aatgtgagcg acccaagatc gctcagcggc
     3841 tgaccggcct ttcattagct cgagaagacc gagagtgact ccggcgagca gcaacgactt
     3901 gagtgcaatt ccgacgagga cgatcatggt tggtcccctt tggcctttcg tgcgcgtgca
     3961 atcatctgtt cgagctcgtt gagctcatcc tctttgagct tgtcggacat gccgagcaat
     4021 gcactcgcag cgcttgcggg cgagccattg aagaaaaccc gaacgatttc acttaaggcc
     4081 gacttcttag cgaccgtgtc ggacaacagg ggactataaa gataaccgcg ctccgattcg
     4141 cttcgttgaa cgaatccctt atcttccagc ctcttgagca ttgcgcgaac cgccgagccg
     4201 ctcagcctta cgggcaatgc gtcgcaaata tcggagacgg cgagcggacc tcgttcgtag
     4261 agcagatcaa cgatctgacg ttcgcggggc gggagcttgc tcagcattct ctacgttcct
     4321 ctgcggcgcc aaacgcgcgc tacatttgta gagtgctaca tctgtagcga taatgcaagc
     4381 cccgttagtg caaggtgatc aaggaccggg aggacacggt caggaatgtc acccatctag
     4441 tcggaacgtt tagttacgcg tatccggtat ggaccccctt gctctctggc ggatggggtg
     4501 ggattcgaac
//
LOCUS       DASRBJ010000142         3458 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_69176,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000142 DASRBJ010000000
VERSION     DASRBJ010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3458
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69176"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            166..1749
                     /locus_tag="VE968_03995"
     CDS             166..1749
                     /locus_tag="VE968_03995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017499830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HZU51017.1"
                     /translation="MHDAIVIGAGHNGLTCAYYLAKKGLKVAVLEAAGTVGGAAVTDE
                     FLPGFRNSAASYTVSLLQPKVIRDLELERHGLKVVLRKTDNFLPGDGDYLLAGRGGLT
                     RKEIVRHVKEDGDAYDRYHNELETVVRLLKKWILRAPPNVGRRASAIPKLISLGRDMA
                     GLSVAETRIVHDFAVRSAAEILDRHFKGDLTKALFGFDGVVGNFASPQAPGTGYVLLH
                     HLFGEAAGVPGAWGHAIGGMGAITQAMGQACREAGVDILLNTPVEEIIVNSGRAAGVV
                     AGGKAWPTSTVIAGVNPRLLFDLLVPQGAVDEDVAARMHGWKCESATFRMNVALSELP
                     KFTVLPKKGNHLTAGIIMAPSLDYMHRAYLDAAVTGWSKQPIIEMLIPSTLDPTLAPK
                     GQHVASLFCQHFRYDLGEGRSWDDEREKVADQIIATVDSHAPGFARSVLGRQIHSPVD
                     LERRFGLIGGDIFHGKMGLDQLFSARPMIGAADYRMPLKGLYLCGSGAHPGGGVTGAP
                     GHNAAHAILADRRFGRRRH"
     gene            1746..2942
                     /locus_tag="VE968_04000"
     CDS             1746..2942
                     /locus_tag="VE968_04000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HZU51018.1"
                     /translation="MRPLAGIKILDLSRVLAGPWCTQLLADLGAEVIKIERPGSGDDT
                     RHWGPPWLGEGKDRVAAYFLSCNRGKKSAAIDFATPAGAALVRRLAQKCDVLIENFKV
                     NGLEKFGLDAASLRSDNPRLVYASITGFGQDGPYSDRAGYDYIIQGMGGLMSITGLPD
                     DVPGGGPMRVGVAVVDLFTGMYTCVAILSALLAREKTGAGTRIDMALFDAQLAMLANQ
                     ASNALVSGSNPPRQGNTHPNIVPYQVFAASDQQIIIAVGNDRQFARLSAICGHREWTQ
                     DERFASNGARVANREVIVPLIREIIRTKPASHWLDQLEAAGVPAGPINSITQALSDIQ
                     SQHRGMVRAIAGVPQVGSPVRFDDERADADLPPPALGAHTSEVLEQLGESEDEIERLR
                     AKGVIG"
     gene            complement(2988..>3458)
                     /locus_tag="VE968_04005"
     CDS             complement(2988..>3458)
                     /locus_tag="VE968_04005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51019.1"
                     /translation="ARGGRQAVSAPPPAADLPNGAMVDRFDSYLYRTRPALPVPAQRE
                     LDEISKLLPSLKQTLDRLETLDPAAQDARRLMSLHLPGLIERYERVPLEFRHETDGEG
                     KTVDERLVEGLSAGKGALFDIVEQLARADVAALETQGRFIQSRYGDEPIESSRP"
BASE COUNT          692 a         1041 c         1045 g          680 t
ORIGIN      
        1 cacccgacga tggccgaaga actggttctg atgcgctaaa aggtcggttg cgcgcggtgg
       61 tggacgacca gggacaattt cctgccgctc ctgccgttga tcattccacc cttgccgtgc
      121 aattcccgct gtaaagattc aagaccggcc tgaaaggctc attcattgca cgacgcgatt
      181 gtgattgggg cggggcacaa cggcctgacc tgtgcttact atcttgccaa gaaggggctc
      241 aaagtcgccg ttctcgaggc cgctggaacg gttggcggcg ccgcggtaac cgacgaattc
      301 ctgccgggat ttagaaattc ggcggcaagc tacaccgtca gcctactgca acccaaggtc
      361 atccgcgacc tggagcttga acgtcatggc ttgaaggtcg tgctgcgcaa aacggataac
      421 tttcttccag gcgatggcga ttacctcctc gccggccgag gcggactcac gcgcaaggaa
      481 atcgtccgtc acgtgaaaga ggacggtgat gcgtatgatc gatatcacaa cgagctggaa
      541 acggtcgttc gactgctgaa aaagtggatc cttcgagcgc cgccaaacgt cggccgaaga
      601 gcaagcgcca tacccaagct tatcagcctt ggacgcgaca tggctggact atccgtggcc
      661 gaaacacgga tcgttcacga ctttgcggtt cgaagtgccg ccgaaatcct cgaccgccat
      721 ttcaagggcg atcttaccaa ggcactattc ggctttgacg gtgtcgtcgg caatttcgcg
      781 tccccgcagg cgccgggcac tgggtacgtt ctgttgcacc atttgttcgg cgaggcggct
      841 ggcgtccccg gagcatgggg gcacgcgatc gggggcatgg gcgcgatcac gcaggctatg
      901 ggccaggcat gccgcgaagc gggtgtcgac attcttctca acacgccagt tgaagagata
      961 atcgtcaatt cggggcgggc agcaggtgtt gtcgcggggg gaaaagcttg gccaacgtcg
     1021 accgtcatcg ccggcgtcaa tccaaggctg ctcttcgatc tcctcgttcc tcaaggcgcc
     1081 gttgatgagg atgttgccgc gcgaatgcac ggatggaaat gcgaaagcgc aacctttcga
     1141 atgaacgtcg cactgtccga gcttcccaag ttcacagtgc tccctaaaaa ggggaatcat
     1201 ctcacggccg gcatcatcat ggcgccaagc cttgactaca tgcaccgagc ctatctcgac
     1261 gcggcggtaa ccggctggtc gaagcagccg atcattgaaa tgcttattcc atcaaccctc
     1321 gacccgactc ttgcgccgaa ggggcagcac gtcgccagct tgttctgcca gcattttcgc
     1381 tacgatctcg gcgaaggtcg aagctgggat gacgaacgtg aaaaggtcgc tgaccagata
     1441 attgctaccg tcgattccca tgcgccgggt ttcgcccgct ccgttcttgg tcgacaaatc
     1501 cattcgcccg tggatcttga gcggcgtttt ggccttattg gcggcgacat attccacggc
     1561 aagatgggcc tcgatcagct gttcagtgcg cggcccatga tcggggcagc cgattatcgc
     1621 atgccgctca agggtcttta tctgtgcggc tctggtgctc atcccggcgg cggtgtgact
     1681 ggagctccag gccacaacgc ggcgcacgcc atactcgccg atcgacgctt tggaaggcga
     1741 cgtcattgag gccgctcgcc ggcatcaaga tcctcgactt gagccgtgtt ctcgctggtc
     1801 cctggtgtac gcagctcctc gcggaccttg gtgctgaagt aataaagatc gagcgcccag
     1861 gctcaggtga cgacacccgt cactggggcc cgccatggct tggggaaggc aaagaccgcg
     1921 tcgccgccta tttcctgagc tgcaaccgcg gaaagaagtc ggcagccatc gacttcgcga
     1981 cgcctgcggg tgccgcgctc gtgcggaggc tcgcgcagaa atgcgacgtg ctcatcgaga
     2041 atttcaaagt taacggtctc gagaagttcg ggctcgacgc ggcgtcgctc cgatcggaca
     2101 atcctcgcct cgtctatgcc tccatcaccg gtttcggaca ggatggacca tattccgacc
     2161 gtgccgggta cgactatatc atccagggca tggggggcct tatgagcatt accgggcttc
     2221 ccgatgatgt cccgggcggc gggcccatgc gcgtcggtgt tgccgtcgtc gacctgttca
     2281 ccggcatgta tacctgcgtt gcgatcttgt ccgcgctgct cgcccgggag aagaccggcg
     2341 cgggcactcg cattgacatg gcgctattcg acgcgcagct cgcgatgctt gcaaatcagg
     2401 cctcaaacgc actggtatcg ggtagtaatc cgccgcggca ggggaatacg catcccaata
     2461 ttgtgcccta ccaagtcttt gccgcgagcg atcagcaaat catcattgct gttgggaatg
     2521 accggcagtt cgcgcgcctt agcgcaatct gtggccatcg agagtggacg caagacgaac
     2581 gattcgcatc gaacggggcg agggttgcaa accgcgaggt catcgtgccg ctgatccgag
     2641 aaatcatcag aaccaagccg gcaagccact ggcttgatca gctcgaggcg gccggcgtcc
     2701 ctgccggtcc gatcaactcg atcacccagg ctctttcaga catccagtcg cagcaccgcg
     2761 gaatggtacg ggcaattgcc ggcgttcctc aggtcggctc gccagtccgc ttcgatgacg
     2821 agcgcgcgga cgcggacctg ccgccgcccg cactcggcgc gcacaccagc gaagtgctcg
     2881 aacaactcgg cgaaagtgaa gacgaaatcg agcggctgag agcgaagggc gtgattggct
     2941 aacgaagctt ggggttcggt tcttcggacc gcaagcaagc tgttccgcta tggtcgcgaa
     3001 ctttcaatcg gctcgtcgcc gtaacgcgac tgaatgaagc gcccctgtgt ttcgagggcc
     3061 gcgacatcgg cgcgagcaag ttgttcaaca atgtcgaaga gtgccccttt tcccgcggaa
     3121 agcccttcga cgagccgctc gtcgacagtc tttccttcgc catcggtctc atgccggaac
     3181 tccaagggca cgcgctcata tcgctcgatc aatcctggca gatgcaaaga catcaagcgc
     3241 cgcgcgtcct gcgctgcggg gtcgagcgtc tcgagacgat caagcgtctg cttgagcgaa
     3301 ggcagcagtt tggaaatctc gtcgagctcc cgctgcgcag gcaccggaag cgcaggccgc
     3361 gttcggtaaa ggtacgaatc gaaccgatcg accatcgcac cattcggtag atcagctgca
     3421 ggaggaggcg ctgacaccgc ttggcggccc cctcgggc
//
LOCUS       DASRBJ010000143         2563 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_69500,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000143 DASRBJ010000000
VERSION     DASRBJ010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69500"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..970)
                     /locus_tag="VE968_04010"
     CDS             complement(<1..970)
                     /locus_tag="VE968_04010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HZU51020.1"
                     /translation="MIRKSAWLLSAGLFALTSPAFAQPGPNGSATQDQAGNQQPTDTG
                     NIIITATRRNQALSDVPMAVSAVTGQNLQNTGATDIRQLNQIAPSLLVSSTSSEAGAA
                     VARIRGVGTVGDNPGLENSVGLFIDGVYRARTGIGLTDLGPIDRIEVLRGPQGTLFGR
                     NTSAGLISIFTAKPRFTPEVSGQIDVGNFNFRRLEASATGPVSDALALRLDGVWDKRD
                     GFLKDVISGRRINDRDRWMLRGQALYQPNDNFSFRLIGDYSKQNEECCGAPFLPAHDV
                     VTNGSGGVVLQPSTIAAIERGLGGVIEDDPNARLTSITPGRNYDSNV"
     gene            complement(1128..1649)
                     /gene="infC"
                     /locus_tag="VE968_04015"
     CDS             complement(1128..1649)
                     /gene="infC"
                     /locus_tag="VE968_04015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014074472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HZU51021.1"
                     /translation="MAPPPPMSGPRYNEFIQSPKVRVIDENGENLGVMYTREAFEQAQ
                     EVGLDLVEISPNSDPPVAKFLDIGRYKYEAQKKANEQRKKQKTQEIKEIKMRPNIDDH
                     DYDTKMKKVVEFLEEGDKVKVTMRFRGREMAHGELGMAVLRRVQEQTQQMAKVEAHPR
                     MEGRQMLMVLAPK"
     gene            complement(1809..2387)
                     /locus_tag="VE968_04020"
     CDS             complement(1809..2387)
                     /locus_tag="VE968_04020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51022.1"
                     /translation="MSLVERVDVLVAIVLGLALAELGTSFHRLMRAGKRVKWDWMSPA
                     LAFLMLLEVVQFWWISQSWYANATELRLLEFLPRLLLLLLIYLLAAAVLPDEVQEDGV
                     DLRAFYVETSRYFWALIVVLTAFIMIFVVPANSQSDYLGGVIRHELVDCIALVIAAVA
                     LLVRNIRAQQAVVISLLALTGWIYLVSGRGFH"
     gene            complement(2411..>2563)
                     /locus_tag="VE968_04025"
     CDS             complement(2411..>2563)
                     /locus_tag="VE968_04025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007684943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HZU51023.1"
                     /translation="PLLLVVGKREAEEGTVALRRLGSEEHQKMMSLDEAVAMIAGEAA
                     APDLKT"
BASE COUNT          478 a          813 c          786 g          486 t
ORIGIN      
        1 tgacgttgga atcatagttg cggccgggcg tgatcgacgt cagccgcgcg ttcggatcgt
       61 cttcgatgac tccgccaagg ccacgctcga tcgcggcaat cgtcgatggc tgaaggacaa
      121 ctccgcccga gccgttggtg accacgtcat gcgccggaag gaacggcgcc ccgcagcatt
      181 cctcgttctg cttcgaatag tcgccgatca ggcggaagga gaaattgtcg tttggctggt
      241 agagcgcctg gccgcgcagc atccagcggt cgcggtcatt gattcggcgg ccggaaatca
      301 cgtccttgag gaagccgtca cgcttgtccc atacgccgtc gaggcggagc gcaagcgcat
      361 cgctcaccgg tccagtcgcg ctcgcctcga ggcggcggaa attgaaattg ccgacatcga
      421 tctgcccgct gacttccgga gtgaagcgcg gcttggcggt gaagatcgag atcaggccgg
      481 ccgaggtatt gcggccgaac aaagttccct gcggcccgcg taggacttcg attcgatcga
      541 tcgggccaag gtcggtcagg ccgatgcccg tgcgcgcgcg atagactccg tcgatgaaca
      601 ggccgaccga gttttcgagg cccgggttgt cacccaccgt gcccacgccg cggattcgcg
      661 cgaccgcggc gcccgcttcc gatgaggtgg aagagaccag cagcgacgga gcgatctggt
      721 tgagctggcg gatgtcggtc gcgccggtgt tctgaaggtt ctgcccggtc accgcgctca
      781 ccgccatcgg cacgtccgac agcgcctggt tccggcgagt cgcggtgatg atgatgttcc
      841 cggtgtcggt cggctgctgg ttgccggcct ggtcctgcgt ggccgagcca tttggcccgg
      901 gctgcgcgaa cgccggactc gtcaatgcaa acaggcctgc cgaaagcagc cacgctgact
      961 tgcggatcat tgtttcctct ccccttcgga cgacaaagcg cccggtcggg agcgaggcta
     1021 aacccgaaca gcagtcaatg ggaagcgacc gaacggctac accccaacaa tcgcgcgccg
     1081 ctgcagcaat ttggcaacac gaatgtaagt aagcttttgg gtcagctcta cttgggcgcg
     1141 agcaccatca gcatctgacg gccttccatg cgaggatgcg cctcgacctt cgccatttgc
     1201 tgcgtctgct cctggacgcg ccggagaacc gccattccga gctcaccatg cgccatctcg
     1261 cggccgcgga agcgcatggt gaccttcacc ttgtcgcctt cctcgaggaa ttcgacgacc
     1321 ttcttcatct tggtgtcata gtcgtggtcg tcgatgttcg gacgcatctt gatctccttg
     1381 atctcctgcg tcttctgctt cttgcgctgc tcgttggcct tcttctgggc ctcgtacttg
     1441 tagcggccga tgtcgaggaa ctttgcgact ggcggatcgg aattgggaga aatctcgacc
     1501 aggtcgagtc caacttcctg cgcctgctcg aatgcttcgc gcgtatacat cacgcccagg
     1561 ttttcgccgt tttcatcgat cacccgaacc ttcggggact ggatgaactc gttgtagcgg
     1621 gggccgctca tcggcggcgg cggcgccatt cctcggcgcg gatagggcgg tggtatactg
     1681 cgtctccaaa atggttgttg gtcagcgcgc gagttaggca ctcccacgct caatgaaaag
     1741 tgcatgtgaa caaatgtgag tcatttttgc cgcgacctgt ggcggactcg cgtcaggcgc
     1801 gcgaccggtc agtggaagcc gcggccggag accaggtaga tccagccggt cagagccaat
     1861 agcgaaatta ccacggcctg ttgggcgcgg atattccgga caaggagcgc cacggctgca
     1921 atcaccaacg caatgcaatc gacgagctcg tgtctgatga ctcctcccag atagtcggac
     1981 tggctgttcg ccgggacgac gaagatcatg atgaaagccg tcagcaccac aatcagcgcc
     2041 cagaagtagc gggacgtttc gacgtagaag gcgcgaagat cgacgccgtc ttcctgaacc
     2101 tcgtccggaa gcaccgctgc ggcgagcaaa tagatcagca agaggaggag gagcctcggc
     2161 aggaactcca gcagcctgag ctcggtcgca ttggcgtacc agctctgcga gatccaccag
     2221 aactggacca cctcaagcag catcaggaag gcgagcgcgg gactcatcca gtcccacttc
     2281 acccgcttgc ccgcgcgcat cagccggtgg aagctggtcc cgagctccgc aagcgcgagc
     2341 ccgaggacga tcgcgaccag aacgtcgacg cgctcaacca ggctcatccg ctgtcccccc
     2401 gaacaacctt ctaggtcttg agatcgggcg cagccgcctc acccgcaatc atcgccaccg
     2461 cctcatcgag gctcatcatt ttctgatgct cttcgctgcc gaggcggcga agcgcgaccg
     2521 tgccctcctc cgcctcgcgc ttgccgacga ccagcagcag cgg
//
LOCUS       DASRBJ010000144         4640 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_525015,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000144 DASRBJ010000000
VERSION     DASRBJ010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4640
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_525015"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..910
                     /locus_tag="VE968_04030"
     CDS             <1..910
                     /locus_tag="VE968_04030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51024.1"
                     /translation="PYFNRAEQLGAPIASFACDRGLAYDLLGQQAKAQADYRLALSGP
                     DADEARERLALSLAISGDRAGAIDALAPLSAKGEPGVARVRAFVLALTGDSNAAMNAI
                     NAAMPGSGANVAPFLQRLPNLAASQKAAAVNLGIFPDGDAAYAGAVPSAPSAALASTD
                     RLSGIDALLRPTPVPAAPAAQAAQPSWPPQSVQAAYAPRPAPATAERTVALFQPKLWL
                     QLSSSPNVDVLASRFRHYKAQNPDVFQGIKPYVARSAEGVRLLVGPFRGPSDAALFAE
                     DLETIGIDAYKFTDSPDDRIAPLLVE"
     gene            907..2070
                     /locus_tag="VE968_04035"
     CDS             907..2070
                     /locus_tag="VE968_04035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016793 - triphosphoric monoester
                     hydrolase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HZU51025.1"
                     /translation="MKPFTALAANPAKSRGRLHQEEKAGPRGPRDIFQRDRDRLIHSV
                     AFRRLRHKTQVFVAPDGDHYRVRLTHSLEVAQIGRTMARALGLNEDLTEALCLAHDLG
                     HPPFGHAGEDALDEAMSAAGGFDHNAHTIRIVTRLETPYPGFDGLNLSWEALEGLAKH
                     NGPLSNVTWAMMEANCEWDLELESWPSLEAQIAAISDDIAYDNHDIDDGLRAGLLAID
                     ELIELPLVGRLWHAIGQRYPGISIEKRQRALVRDMIGYMVGDVLEETERRVRRSGAQS
                     IGDVREAGVSLAGFSEAVHREERELKQFLYDRLYGLSELQPVRKEAERVVRNLAEAYR
                     ADPELLPQSWRGEGTATQKLRTIGDFIAGMTDRFAIARHEELVGEVNLPARRF"
     gene            2148..3596
                     /locus_tag="VE968_04040"
     CDS             2148..3596
                     /locus_tag="VE968_04040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1800 domain-containing protein"
                     /protein_id="HZU51026.1"
                     /translation="MLASTIALNRFGLGRRADEQAPEDAKRWLLQQLDHFDAAPRALA
                     QVPRRTEVIAQLADYLSAQQMAGKLKRQVQPASLPTAVAPPPAQADSGAEELKKFLRQ
                     SIQQDYLVMNAARVDAALTTASPFVERLVHFWANHFAVSVDKLPVIGLAGLLEFEAIR
                     PHVLGKFSDMLLAVEQHPAMLVYLDQAQSVGPDSLAGLRSAMRGGKQRGLNENLAREI
                     MELHTLGVRSGYSQADVTEFARALTGWTVSGLSRGPGARFIGGTPGEFQFAAVLHEPG
                     RRMIMGRTYAQEGEQQARSILLDLATNPATARHIATKLARHFAGDDPPQALVERLTKS
                     YVASGGDLPALYRVLIASPEPWAPRPLKFKNPWEWTLSALRAVDARELEPKQAAGVLR
                     QLGQATWQPGSPAGWDDIAASWAGPDALVRRVEIAQRIAEKAAPNLDARTLAEKLFPD
                     SLSEATRTAVARAESPAEGLALLLVSPEFVRR"
     gene            3599..>4640
                     /locus_tag="VE968_04045"
     CDS             3599..>4640
                     /locus_tag="VE968_04045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HZU51027.1"
                     /translation="MLTRRSFLAATGMSGAISLLGFPNMAFAKTNGERRFVFIIQRGA
                     ADGLNIVAPTGDPAYEALRGEFAPELASGAKLNSFFTLHPALAETAKMYGSREALFVH
                     AVASPYRDRSHFDGQNVLESGGSAAYRLKDGWLNRLLDLLPASEARALALSSTVPMAL
                     RGAHQVSSYAITQLAKPSDDLLARVGALYESDHQLHGLWTAAMETREKAGEPMRASGG
                     GQKGSAAGTLAARMLLGDGARIAMIETTGWDTHSGQRGRLAAQLRDLDGMLAALKSGL
                     GAEWSNTLVVVATEFGRTAKPNGTGGTDHGQASAAMLIGGAVAGGKVIADWPGLADSM
                     LYEGRDLKPTADL"
BASE COUNT          870 a         1440 c         1431 g          899 t
ORIGIN      
        1 gccgtacttc aaccgcgccg agcagctcgg agcaccgatc gcgagctttg cctgtgaccg
       61 cggtcttgct tacgaccttc ttggtcagca agcaaaagcg caggccgatt atcggcttgc
      121 tcttagcgga cctgatgccg acgaggcgcg cgagcgtctc gctcttagcc tcgccatcag
      181 tggtgaccgt gccggcgcaa ttgatgctct tgcaccgctt tccgcgaagg gagagccggg
      241 cgtcgcgcgc gttcgcgctt tcgtcctcgc gctaactggt gattcaaacg ccgcaatgaa
      301 cgcgatcaat gcggcgatgc ccggaagcgg cgcgaacgtc gcgccttttt tgcagcgtct
      361 tcccaatctt gcggcgagtc agaaggccgc cgccgtaaac ctcggcattt ttccggatgg
      421 cgatgctgct tacgcgggag cggtgccatc ggcgccgtct gccgctttgg cgagcactga
      481 tcgactttcc ggcattgatg cgctcttgcg accaacgccg gtgccagccg cgcctgccgc
      541 gcaggcggct caaccctcat ggcctccaca gtcggtgcag gctgcttacg cacctcgacc
      601 tgcgcccgcg acggctgaac gtacggttgc attgttccag ccaaagcttt ggctccagct
      661 ttcgagcagt ccgaatgtcg acgtgctcgc cagtcgcttc cggcattaca aggcgcagaa
      721 ccccgatgtc tttcagggga taaagcccta tgtcgcgcga agcgccgaag gcgtccgcct
      781 gctggtcggc ccgttccgtg gaccatccga cgcagcactg ttcgccgagg atctcgagac
      841 aattggcatc gacgcgtaca aatttaccga ttcccctgat gacaggattg cgccactgct
      901 ggttgaatga agccatttac tgcgctcgct gctaacccgg ccaaatctcg cggcaggctc
      961 catcaagaag aaaaagcggg tccgcgcggg ccgcgtgaca tcttccagcg cgatcgtgac
     1021 cgactgatcc actccgtcgc gtttcgccgc ttgcgtcaca agacccaggt cttcgtcgcg
     1081 ccggacggcg accattatcg agtccgtctc acccacagcc tcgaagtcgc gcagattggc
     1141 cgaacaatgg cccgcgcact cggtctcaac gaagacctca ccgaagcact ttgtctcgcg
     1201 catgatctcg gccatccgcc atttgggcat gccggcgaag acgctcttga cgaagcgatg
     1261 tcggcagctg gtgggttcga tcacaatgcg cacaccattc ggatcgtcac caggcttgaa
     1321 actccctacc cgggatttga cgggctcaat ctcagctggg aggcccttga gggtctcgcc
     1381 aagcacaacg gccccttgtc gaatgtcact tgggcgatga tggaagccaa ttgcgagtgg
     1441 gaccttgaac ttgagagctg gccaagtctc gaagcccaga tagccgcgat ttcagacgac
     1501 attgcctatg ataaccacga catcgacgat gggcttcgtg ctggtttgct ggcgatcgac
     1561 gaactcatcg agcttccgct cgtcggcagg ctttggcacg cgattgggca gcgctatccc
     1621 ggtatttcga ttgaaaagag acagcgcgcg ctggtgcgtg acatgatcgg atacatggtc
     1681 ggggacgtcc tcgaggaaac cgaacgtcgt gtacgtcggt cgggtgctca gtcgattggc
     1741 gacgttcgcg aggcaggagt ttcgcttgcc ggtttttcgg aggccgttca tcgtgaagaa
     1801 cgggagctga agcagttcct ctacgacagg ctctatggcc tttccgagct ccagccggtg
     1861 cgcaaggagg ccgagcgcgt cgtccggaac ctcgccgagg cttatcgcgc tgacccggaa
     1921 ctcctccctc agtcctggcg cggcgagggt accgccaccc agaagctgcg gaccattggt
     1981 gacttcatcg cgggtatgac cgaccggttt gcaatcgctc gtcacgagga gcttgttggc
     2041 gaggtcaatc ttcccgcaag gcgattctga ggaaacgagc caagagagca atcttcagaa
     2101 cgcgttcagc tgagttgaac atagtgagtt ccttcgatgg aggctaaatg cttgcaagca
     2161 cgatcgcgct caatcgcttc ggactgggcc gacgcgcgga tgagcaggcg ccggaagatg
     2221 caaagcgctg gcttcttcaa cagctcgatc atttcgacgc cgcgccccga gcgcttgcgc
     2281 aagtgcctcg ccgcaccgag gtaatcgcgc aacttgctga ttacctgtcg gcgcagcaaa
     2341 tggctggcaa actgaagcgg caagtgcagc ctgcatcgct gccgaccgcc gtcgctccgc
     2401 cgccggcgca agcggattct ggggccgagg agctcaagaa gtttctccgg cagtccatcc
     2461 agcaagacta tttggtaatg aacgcggcac gcgtcgacgc ggcgctgacc accgctagtc
     2521 cgttcgtcga gcgcctcgtg catttttggg cgaaccattt cgcggtttcg gtcgacaagc
     2581 tgcccgtcat cggacttgcc ggactgctcg agttcgaagc catcaggccg catgtacttg
     2641 gcaagttctc cgacatgctg cttgcggtcg agcagcatcc cgcaatgctt gtctatcttg
     2701 accaggcaca gtcggttggc ccggattcgc tcgcgggcct tcgctcggcc atgcgaggcg
     2761 gcaagcagcg ggggctcaac gagaatctcg cgcgtgaaat catggagctt cacactcttg
     2821 gcgtgcgcag cggctatagc caagcggatg tgacagagtt cgctcgcgcg ctaaccgggt
     2881 ggaccgtaag cggactgtcg cgaggcccgg gcgcccgttt cattggcgga acacccggcg
     2941 aattccagtt tgccgctgtc ctgcatgaac ctggccggcg aatgatcatg ggcaggacct
     3001 atgctcagga aggcgaacag caagcgcgat cgatcctgct cgatcttgcg acgaacccag
     3061 caacggcacg acacatagcg acgaagctcg cgcggcattt cgcgggcgat gacccaccgc
     3121 aagcattggt tgagcggctc accaaatcgt acgtcgcaag cggcggtgac ttgcccgcac
     3181 tctaccgagt actcatcgcc tcccccgagc cttgggcgcc tagaccgctg aagttcaaga
     3241 acccttggga atggacgctg tcggcgctgc gcgcggtcga tgcgcgtgag cttgagccga
     3301 agcaggctgc cggtgttctc cggcagcttg gccaggcaac ctggcagccg ggctcgccgg
     3361 ctggctggga cgacatagcc gcgagctggg ctggacctga tgcgctcgtg cgccgagttg
     3421 aaatcgccca gcgcatcgct gagaaggcag cgcctaacct cgatgctcga acgctcgccg
     3481 agaaactctt cccggattca ctgagcgaag cgacccggac cgccgtcgct cgtgccgaaa
     3541 gtccagccga gggcctggcg ctccttctag tcagtccaga attcgtgagg agatagggat
     3601 gctcacacgt cgatccttcc tggctgcgac gggcatgtcc ggcgcgatca gcctgttggg
     3661 ctttcccaac atggcgttcg cgaagaccaa tggcgagcga cgcttcgtgt tcattatcca
     3721 gcgcggtgcg gcagatggac taaacattgt cgcgccgacc ggcgatcctg cttacgaggc
     3781 gctgcgcggc gaattcgcac cggagcttgc atcgggcgca aagctaaatt ccttcttcac
     3841 tcttcatcca gcgctcgccg aaaccgcgaa aatgtatggc tcgcgcgaag cgctcttcgt
     3901 tcatgcagtc gcctcgcctt atcgggaccg ttcgcacttc gatggccaga acgttctcga
     3961 aagcggtgga tccgccgctt atcggctgaa agatggctgg ctgaaccgtc ttctcgatct
     4021 cttgccggcg agcgaggcta gggcgcttgc actttcgtcg acggttccga tggctcttcg
     4081 cggagcccac caggtctcat cgtacgcgat cacgcaattg gcgaagccgt ccgacgatct
     4141 gctggcccga gtcggcgcac tctatgaaag cgatcaccag ttgcatggct tgtggaccgc
     4201 cgcgatggag acgcgtgaga aggccggcga gccaatgcgc gccagcggcg gcggccagaa
     4261 gggaagcgcc gccggcacgc tagcggcgcg gatgctgctt ggcgacggcg cgcgaatcgc
     4321 aatgatcgaa acaactgggt gggacacgca ctctggtcag cgagggagac ttgccgcgca
     4381 gttgcgcgat ctcgatggca tgcttgccgc gctcaaatca ggacttggcg cggagtggtc
     4441 aaacacgctc gtcgtggttg cgaccgaatt tggccgaacc gcgaagccga atgggacggg
     4501 tgggaccgac cacggccaag cctctgcggc aatgctgatc ggcggcgctg tcgccggcgg
     4561 caaggttatc gccgactggc cggggcttgc cgactcaatg ctttacgaag gacgggacct
     4621 taaaccgact gcggatctcg
//
LOCUS       DASRBJ010000145         4464 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_165167,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000145 DASRBJ010000000
VERSION     DASRBJ010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4464
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165167"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..329)
                     /locus_tag="VE968_04050"
     CDS             complement(<1..329)
                     /locus_tag="VE968_04050"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HZU51028.1"
                     /translation="MNGLSLSRILAILSKEFTQLVRDRLTYAMIIGIPVIQLLLFGYA
                     INSDPKHLPTAVLVQDHGKFSRSVLGALQRSDYFDLKFAARSPAEMQQMIERGTVQFA
                     ITIPGDFT"
     gene            complement(326..1255)
                     /locus_tag="VE968_04055"
     CDS             complement(326..1255)
                     /locus_tag="VE968_04055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HZU51029.1"
                     /translation="MTLAIDVRDLSKRFGTLEAVNHIAIQIEQGHITGFLGPNGSGKT
                     TTLRMLCGLLTPDSGEGQVLGLDFPREAEAIKRQTGYMTQHFSLYDDLTIEENLTFIA
                     RVYSLDHVRRRVTDTLQKLGLAERRKQLAGQLSGGWKQRLALAAAVMHEPKLLLLDEP
                     TAGVDPQARRDFWAEIHQFAEDGMTVLVSTHYMDEAERCHEIAYIFNGELIARGTAGD
                     VIKQSRLVTFEAQGPRADRLAGDIADRPGVEMVAPFGAALHVSGTDRTSLEAAIEPFR
                     HEPWHWTEVPASLEDVFIQLMRENGGQKAQMAA"
     gene            complement(1252..2193)
                     /locus_tag="VE968_04060"
     CDS             complement(1252..2193)
                     /locus_tag="VE968_04060"
                     /inference="COORDINATES: protein motif:HMM:NF024829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HZU51030.1"
                     /translation="MSKFRALAVFAVIIVAVAGWFLFASRGHARVLSGYIEGEDLYLA
                     APVSGTVGEVLVSEGQRVSPGQQIFRIDPATLTAQGEQASANLTAARTQIASAQAQAQ
                     QADADVAGANANLAKARQDLARLLTVKRADAAAVAGKDLDAARAAVADANSRLASAQK
                     TADARRAQIVATRAQAAQARGGAKEIAIRVNQLSPAAPSAGLVESVFYQAGEWVNANQ
                     PVVALLPDNEIKVRFYVPEPEAARYRPGQTIHFSCDGCGGALVARIAYVSPRPEFTPP
                     VIFSRDSRDRLVFMVEAYPSRATRLMPGLPVDVEPLQ"
     gene            complement(2190..3641)
                     /locus_tag="VE968_04065"
     CDS             complement(2190..3641)
                     /locus_tag="VE968_04065"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HZU51031.1"
                     /translation="MALLSGCTVGPSYSPPSISTPGRFAEAPASRAVKDTELATWWRR
                     FGDPRLAELINMALAQNLDVQSAAARIREARAREMVAGAVDRPQVDAQASATRQRISE
                     NAIPLPPGASGGPSQSVGGSSAVAFGLPGSEFNSFRVGFDASWEIDLFGKGRRSVEAA
                     KARFAEAVWNRRDMQVTAAGEVANAYFTLRELQARIGTAERELARQERMERLVAAQVK
                     GGLVSGLDLEQQRSDRASAAAAISPLQAQANAEVHALGILTGQTPEALTAALSNPGPL
                     PDAGEVPPPGIPSELLRRRPDIRAAERELAAATADIGVAVADLYPQFSLTAAPALVST
                     ALATLLNWGSRTYSLGASFDWPIVNGGRTRGNIAIANARQQEALITYRKTVLGALQDV
                     EDTLARTDSDHEELARLQQALSNARRAEAIARSRYSGGLVTYSDVLQAQARTLKLDSE
                     LMELKGTLARDTAALFKALGGGWPELAQGVTQP"
     gene            complement(3662..4279)
                     /locus_tag="VE968_04070"
     CDS             complement(3662..4279)
                     /locus_tag="VE968_04070"
                     /inference="COORDINATES: protein motif:HMM:NF028169.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HZU51032.1"
                     /translation="MANPKWLRRSEDRPREICAAALEVFAENGFAAARVDEIARRAGV
                     SKGTLYLYFNDKEDLFRAVVRDAIAPNVQAITAASSSWDARFSDFVRLFLSGFAERES
                     RLPLGAVAKIVIGESRNFPELARVWHNEVASKALDALAQVIERAQKRGEVREGDARLF
                     AFSLLGPMVVGALWRATLVPVGGTEVDLTSLAKQHAETVLAGLLL"
BASE COUNT          872 a         1345 c         1371 g          876 t
ORIGIN      
        1 gtgaaatcac ctggaatagt gattgcgaac tgcaccgtcc cacgttcgat catctgctgc
       61 atttcggctg gtgagcgcgc agcgaatttg agatcgaaat agtcgctccg ctggagtgcg
      121 ccgagaaccg agcgtgagaa ctttccgtgg tcctgcacga gcacggcggt cggcagatgc
      181 ttcggatcgg aattgattgc atagccgaac agcaagagct ggataacggg aatcccgatg
      241 atcatcgcat aggtcagccg gtccctcacc aactgcgtga attccttcga aaggatcgcg
      301 agaatgcgtg aaagcgacaa gccgttcatg ccgccatctg tgctttctgg ccgccattct
      361 cgcgcatcaa ctggatgaac acgtcctcga ggctcgccgg gacctcggtc cagtgccacg
      421 gctcatgtcg aaacggttcg attgctgctt cgaggctagt tcgatccgta ccgctgacgt
      481 ggagcgcggc gccgaatggt gcaaccattt caacgcctgg cctgtcggcg atgtcgccag
      541 caagacgatc ggctcgcggg ccctgcgcct caaaggtgac gagacgcgat tgcttgatta
      601 cgtcgcccgc agttccgcga gcaatgagtt cgccgttaaa gatataagcg atctcgtggc
      661 atcgctcggc ctcgtccatg taatgagttg aaacgagcac ggtcatcccg tcctcagcaa
      721 actggtggat ctcggcccag aaatcgcgcc gcgcctgcgg atcaacaccg gcagtcggtt
      781 catcgaggag aaggagtttg ggttcgtgca tgacggcagc ggccagcgcg aggcgctgct
      841 tccagccacc cgaaagctgt ccggcaagct gcttccgacg ctccgcgaga ccaagcttct
      901 ggagtgtatc ggtgacgcgt cgacgcacgt ggtcgaggct gtaaacgcgc gcaatgaacg
      961 tcaaattctc ttcaatcgtc aggtcgtcat aaagagagaa atgctgcgtc atgtagccgg
     1021 tctgacgctt gatcgcctcc gcttctcgcg gaaaatccag cccgagtacc tggccttcgc
     1081 cactgtccgg cgtcagcagt ccgcacaaca tgcgcaacgt ggttgtcttg cccgaaccat
     1141 ttggcccgag gaagccggtg atatgaccct gttctatctg gatcgcgatg tggttgaccg
     1201 cctcgagcgt gccgaatcgc ttgctgagat cacgcacatc gatcgcgagg gtcattgcag
     1261 cggttccacg tctaccggaa ggccgggcat cagcctggtg gcacgggagg gatatgcttc
     1321 aaccatgaat accaaccggt cgcggctatc gcggctgaat atcaccgggg gcgtaaactc
     1381 tggccttggg ctgacatagg cgatccgagc tacaagcgcg cctccgcaac cgtcgcacga
     1441 aaaatggata gtctgtcctg gccgatagcg agccgcttca ggttcaggca cgtagaagcg
     1501 cactttgatc tcgttgtcgg gcagcagtgc cacgacgggc tggttagcgt tcacccattc
     1561 gccggcttga taaaacacgc tttcaacgag gcctgccgat ggcgcggcgg gcgagagctg
     1621 gttgacgcgg attgctattt cctttgcgcc gccccgggct tgggcggctt gcgcacgagt
     1681 ggcaacaatt tgcgcgcggc gcgcatcggc ggtcttctgt gctgaagcga ggcgagaatt
     1741 ggcatcggca acggccgccc gcgccgcgtc aaggtccttg ccggcgacgg ctgcggcgtc
     1801 ggcgcgcttg accgtcagga gacgcgcaag atcttgcctt gccttggcga ggttagcgtt
     1861 ggctcctgca acgtcggcat ctgcctgctg ggcctgcgct tgtgctgatg cgatctgcgt
     1921 ccgcgcggcg gtgaggttcg cgcttgcctg ctctccttgt gcggtgagag tcgcaggatc
     1981 gatccgaaag atttgttgtc cgggagaaac cctttgacct tccgatacca ggacctcgcc
     2041 gactgttccc gagacgggag ccgcaaggta aagatcctcg ccttcaatat agcccgacag
     2101 cacgcgcgcg tgcccacgcg aagcaaacag gaaccatcca gcaacggcaa cgatgatgac
     2161 agcaaataca gcgagcgctc ggaacttgct catggctggg tcactccttg tgcaagctcc
     2221 ggccaacccc cgccgagtgc cttgaacaac gccgcggtgt cccgagccag cgtgcccttg
     2281 agctccataa gctcactatc gagcttgaga gtgcgtgcct gcgcttgcaa cacatctgaa
     2341 taagtgacga gcccgcccga ataacgtgag cgcgcgatag cctctgctct tcgagcgttg
     2401 cttagcgcct gctgcagcct ggcaagttcc tcgtgatcgg agtcggtgcg cgcaagagtg
     2461 tcttcaacat cctgcaacgc gccaagaact gtcttgcggt aggtgatcag cgcttcttgc
     2521 tggcgggcat tcgcgatggc gatatttccg cgcgtgcggc cgccattcac tatcggccaa
     2581 tcgaatgacg cgccgagtga ataggttcgg ctgccccagt tcagcaaagt tgcgagtgcc
     2641 gtgctgacca gtgccggcgc ggcggtcaac gagaattggg gatagaggtc cgccacggca
     2701 acgccgatat cggctgtcgc tgcggcaagc tcccgttccg cggcacgaat gtccggccga
     2761 cgacgcagga gctcggaagg tatgccggga ggcggcactt cgcctgcgtc aggcagcgga
     2821 ccggggttcg atagcgcagc agtgagcgct tcgggagttt ggccagtgag gattccaagc
     2881 gcatgcacct ccgcattcgc ctgcgcttga agcggggaaa ttgcggcggc agcagacgct
     2941 cggtctgacc tctgctgttc aaggtcgaga cccgaaacga ggcctccctt cacttgagca
     3001 gcgaccaacc gctccatccg ctcctggcgc gctaactcac gctcggcggt tccgatgcgg
     3061 gcctggagtt ctcttaaagt gaaatatgca ttggcaactt ctccagcggc ggtgacctgc
     3121 atgtcgcggc ggttccagac agcctccgcg aaacgagctt tagctgcttc aacggatcgc
     3181 cggccttttc cgaaaaggtc tatttcccaa ctggcgtcga acccgacacg gaagctgttg
     3241 aactcgctcc cgggaagtcc aaacgcgacg gcgcttgatc ccccaacaga ctgactcggg
     3301 cctccgctcg caccaggagg taagggaatt gcgttttcac taatgcgttg ccgcgtagcc
     3361 gatgcttgcg catcgacttg cgggcggtca acggcgcctg cgaccatctc gcgcgctcgc
     3421 gcttcgcgga tgcgcgcggc agcactttgg acgtcgaggt tctgcgcgag cgccatattg
     3481 atgagctcgg ccagccgtgg gtcgccgaag cgacgccacc atgttgcaag ttccgtgtcc
     3541 ttcactgcgc gtgacgcggg cgcctcagcg aagcggccgg gcgttgaaat cgagggagga
     3601 ctataacttg gtccgacggt gcagccggag agcagggcca cgataatgct cgcccggcct
     3661 ttcaaagcag tagacccgca aggacggttt cggcgtgctg cttagcgagg ctcgtcaaat
     3721 cgacctcggt tcctccgacg ggaaccaatg ttgcgcgcca gagggcgccg accaccattg
     3781 ggccgagcag gctgaaagca aagaggcggg cgtcgccttc gcggacttcg ccgcgcttct
     3841 gcgcgcgctc gatcacttgc gcgagggcat cgagtgcctt cgaagcgacc tcgttgtgcc
     3901 atactctcgc gagttccgga aaattgcgcg attccccgat gacgatcttg gccacggcac
     3961 caagcggaag gcgcgactcg cgctctgcaa atccgcttag gaacagccgg acgaaatcgc
     4021 tgaaacgagc gtcccatgac gacgaagctg ccgtaatcgc ctggacattt ggagcaatcg
     4081 cgtcgcgtac gactgctcgg aacaagtctt ccttgtcgtt gaaatagagg tagagggtcc
     4141 ccttcgatac gcccgcccga cgcgcgatct catcgactct ggcggcggcg aatccatttt
     4201 cggcgaacac ctcgagcgca gccgcgcaga tctcacgcgg tcggtcctcg gatcggcgca
     4261 gccatttggg atttgccatt aactgactga ctagtcagtt actaacgttt tggcaacgcc
     4321 aacagtgcca gggcgtgaag atgctcagca gcgagttcgc actgtggcgc gtcaaacgac
     4381 agggcggcaa gagcgaggac cgccttggat ttgtagcgat caagaggttg ttaaccagcg
     4441 gatcctaggc gtctcaaaat gagc
//
LOCUS       DASRBJ010000146         8962 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_14312,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000146 DASRBJ010000000
VERSION     DASRBJ010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8962
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14312"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..605)
                     /locus_tag="VE968_04075"
     CDS             complement(<1..605)
                     /locus_tag="VE968_04075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010183674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZU51033.1"
                     /translation="MATRLPTGFGWNPKLIEAAIALNDNRLDVAERILKPYLKEDPFD
                     AAAIRMLAELAARIGRWRDAENLLRRAVELAPAWTAARANLALVLGRMGRPAEAMELL
                     ETIFEEEPEELGHWNLKAATLGRLGNFDEAILLYEDVLEQSPHQPRVWLSYGHLLKTV
                     GRQADAISAYRKAIAIRPTLGEAWWSLANLKTVKFGNADLAA"
     gene            652..1113
                     /locus_tag="VE968_04080"
     CDS             652..1113
                     /locus_tag="VE968_04080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006832045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HZU51034.1"
                     /translation="MIYFEDLAVGAVTEFGTYDVTREEVIEFARKYDPQPFHLSDEEA
                     AKTHFGRLAASGWHTAAMTMAVIARHVVESAQAGLGSPGIDELRWRKPVYPGDTLRVS
                     GEIVEKTPSRSRPELGSFRTRTTVTNQRGETVMTFVSIVLIRRRPTTSETA"
     gene            complement(1120..1509)
                     /locus_tag="VE968_04085"
     CDS             complement(1120..1509)
                     /locus_tag="VE968_04085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010183943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51035.1"
                     /translation="MRLRLALALAGATLALGACADDLYGPYGYGGVGVGYAYGGYPYG
                     YGAYPYGYYGGYDPFGWYGDFYYPGVGLYVYDSYRRPHRWSGDQQRYWTSRRANYQAR
                     TGSSWSGANWSGFSRSGMSGGRSHHRG"
     gene            complement(1649..2572)
                     /locus_tag="VE968_04090"
     CDS             complement(1649..2572)
                     /locus_tag="VE968_04090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006957596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HZU51036.1"
                     /translation="MVRVIGFLVGLVFAGVLLISLISGVASNLSSPPAPLASEEFHKS
                     PKPLHLASDGPFGKFDKRQLQRGFQVYSEVCSACHSLKLVSFRDLKGLGYNDAEIKKI
                     ASDWKTQVPSINPDTGEPATRKALPSDTFPPPFANETAARAANNNALPPDLSLITKAR
                     EGGAPYVYSILTGFQPQPAELLKKFPDAKTPPNLHYNPYFANLNIAMPPPLTTNGQVT
                     YADGTPSTVDQMAKDVAAFLVWTAEPNLENRHAAGLSVVIFLLFGTVLGYLAYQQIWH
                     EAKRAVRVTGVLEPENKAKTRRAKAKQGVAG"
     gene            complement(2589..3908)
                     /locus_tag="VE968_04095"
     CDS             complement(2589..3908)
                     /locus_tag="VE968_04095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003050481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6"
                     /protein_id="HZU51037.1"
                     /translation="MSFSWAKPYEPKHPVMKWLDERLPLPRVVYGAIGGGYPVPRNLN
                     YWWNFGVLAGIFLTIQIITGIVLAMHYTASTDGAFNSVNQLIMRDVNAGWLLRYAHMN
                     GASFFFIVTYIHIFRGLYYGSYKAPRELVWMLGLVIYFLMMATAFMGYVLPWGQMSYW
                     GAQVITGFFSAFPVVGEPIRIWLLGGYAPDQAALTRFFSLHYLLPFVIAGVVILHIWA
                     LHIPGSSNPTGVDVKDERDTLPFHPFYTAKDGWFAGAFLLVYCIVTFYAPNYLGHPDN
                     YIPANPLATPAEIVPEWYFWPFYAILRSFTFDFILPAKLWGVLAMFSSILLLFFLPWL
                     DKSPVRSGSYRPVFKRFFWLLVVDVLILGWAGGGAPTPFRNALGQICAAYYFLHFLVI
                     LPLVSRFETPLPLPSSISESVLHGEAAEAAPAGANTSGGSIATATAH"
     gene            complement(3917..4501)
                     /gene="petA"
                     /locus_tag="VE968_04100"
     CDS             complement(3917..4501)
                     /gene="petA"
                     /locus_tag="VE968_04100"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014077742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HZU51038.1"
                     /translation="MATKAQPAEGPETTDTNGDGVRRRDFLNVAAVSFAGVGAVAAIA
                     PLFVQMAPSADVLAQATTEVDISKVQPGQGIKAQWRKQPVFIRNLTPREISEADAVPL
                     SSLRDPQTLAERTKPGHKNWLITLGVCTHLGCVPLGIGEGENRGKYGGYFCPCHGSQY
                     DTAARIRQGPAPKNLFVPDYKFSSPTTVLIGAKG"
     gene            complement(4664..5065)
                     /locus_tag="VE968_04105"
     CDS             complement(4664..5065)
                     /locus_tag="VE968_04105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51039.1"
                     /translation="MLRTGIAIVAGLIAWVVIVTLLNFGLRASLPGYHAAEATLQFSA
                     MMKAGRLAEAALSSIASGAVVKILAPSSRWGGWILGLILLAAFVPVHIQVWNKLPLWY
                     HLTFLLTLAPLVAFGALLAAEIRPNRAPVAA"
     gene            5117..5686
                     /locus_tag="VE968_04110"
     CDS             5117..5686
                     /locus_tag="VE968_04110"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HZU51040.1"
                     /translation="MNTRLLVLGVLHRGNFHPYEIKRRLKAALVECYINVDVGTLYYA
                     VRALEKERLIEEAAREAVGRGGIRTIYRITTQGRREFRQCLQREIESDGPVAPSLYGA
                     LLFLHLADPELVTKALRQKVEHLTDLIEKLEPMRRQFADSLSTGGKHLLDHIEQQRRL
                     DREWLRDLLADIDANGIKDVKDPSKLARS"
     gene            complement(5683..6579)
                     /locus_tag="VE968_04115"
     CDS             complement(5683..6579)
                     /locus_tag="VE968_04115"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008599626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HZU51041.1"
                     /translation="MAAPQTTTFDDRDGYIWLDGAMVPWRDARVHVLTHALHYASSVF
                     EGQRAYNGVVFKLNEHSERLRKSASLLGFELPWTVEEINQACNDVLKINGFINAYMRP
                     VAWRGSESMGVAPGITKPHLAIAAWEWGKYYDPRVSDNGIRLEIAPWRRPAPYTAPTA
                     SKASGLYMICTLSKQHAEANGYNDALMLDWRGRVAEATGANVFFVRDNVLHTPVPDCF
                     LDGITRQTVMEIARSRGIEVNERAIWPEELESFQQMFLTGTAVEITPVKSVGPWNFEI
                     GDLTRQLTKDYHDLVNGRIPNS"
     gene            complement(6589..7437)
                     /locus_tag="VE968_04120"
     CDS             complement(6589..7437)
                     /locus_tag="VE968_04120"
                     /inference="COORDINATES: protein motif:HMM:NF026098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase dimerization
                     domain-containing protein"
                     /protein_id="HZU51042.1"
                     /translation="MTDILKLPQPTWFVGCGNMGGAILEGWRVGGIDVSGVTVIRPSG
                     AAVAGARVVTSYAEAGSPPALAVLAFKPQKLDQVAAELRRFLGAKTILVSLLAGVEAT
                     SLRRRFPGVAAIVRATPNLPVAVRRGVTGLYSTDADQQAREQLNNLFAALGFAIWMAD
                     ETKLAALGSVAGAGPAYVARFLAALARAAEEAGLSAEIASVIARETVLGTAWMAATTG
                     EDMASVARRVASPRGTTEAGLAVLDAHQSLNRLVGATIEAAGRRGAELAEEARSGSLA
                     ESAHLS"
     gene            complement(7434..7943)
                     /locus_tag="VE968_04125"
     CDS             complement(7434..7943)
                     /locus_tag="VE968_04125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HZU51043.1"
                     /translation="MSEEEVQDERDDGAPIEVLEQYFEARGWACERTGEGEIVASAAG
                     SWAQYELRGVWRPEDQVLQFLAFPDIKVSLDKRAAIFEALSLINEQLWLGHFEMWSGS
                     GLIVFRHSTILDARGGEGLSLEQAEAIAEAAVEECERFYPVFQFVLWGGKSPGEAIAA
                     ALIDTHGEA"
     gene            complement(7946..8251)
                     /locus_tag="VE968_04130"
     CDS             complement(7946..8251)
                     /locus_tag="VE968_04130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HZU51044.1"
                     /translation="MQSENRMFDDFVKMVNGFAGTFAGMGREAESSAREKFKEWIGGA
                     DFVGRDEFEAVKAMAGAARDENEILKARIAALEAKIAGPTPGTAGAKRPGKKSSPEA"
     gene            complement(8348..8878)
                     /locus_tag="VE968_04135"
     CDS             complement(8348..8878)
                     /locus_tag="VE968_04135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TspO/MBR family protein"
                     /protein_id="HZU51045.1"
                     /translation="MAEKTRDLRWPWIALIAIILIELFGGASAWLANSGYRNSWFDLL
                     QKPPFMPPAWAFAVTWPILYALMGVSVAMIIAEPASPRRQAALTLFFIQLALNFTWSP
                     IFFKAHDIRLAKIIIFVMTAVAAAAAGQFLRLRKAAGLLLIPYLAWLIFATMLNATIE
                     DLNPVANHSLLRGAQR"
BASE COUNT         1903 a         2679 c         2701 g         1679 t
ORIGIN      
        1 gcggcaaggt cggcattgcc gaatttcacg gttttgaggt tcgcaaggct ccaccacgct
       61 tcgccgagcg tcgggcggat cgcgatagcc ttgcgatacg cggaaattgc gtcggcctgt
      121 cgtccgacgg tcttcaggag atggccgtaa ctcagccaca cgcgaggctg gtgcggactc
      181 tgctcgagga catcctcgta aagaaggatt gcctcgtcga aattgccgag acggccgagt
      241 gtcgccgctt tcagattcca atggccgagt tcctccggct cctcctcgaa aattgtctcg
      301 agcagttcca tcgcttctgc agggcgcccc atccgcccaa gtacgagcgc aagattggct
      361 cttgccgctg tccaggcagg cgcaagctcg accgcacggc gcaggaggtt ttcggcatca
      421 cgccagcggc caatccgtgc ggcaagctcg gctagcatcc ggattgctgc cgcgtcgaac
      481 ggatcttcct tgagataggg tttgaggatc cgctcggcga catcgagcct attgtcgttg
      541 agcgcgatcg cagcctcgat cagtttggga ttccacccga agccagttgg aagtctcgtc
      601 gccacgcggg cgagcgtagc gccatgattg ctgcacggct atgcgctaag gatgatctat
      661 ttcgaggatt tggccgtcgg cgccgtcacc gagtttggga cctatgacgt gacgcgcgaa
      721 gaagtcattg agttcgcgcg caaatatgac ccacaaccgt ttcatttatc cgatgaggaa
      781 gcggccaaga cccatttcgg acggctcgca gcaagcggtt ggcacacggc cgccatgacc
      841 atggcggtga tcgcgcgcca cgtcgtggaa agcgcgcaag ccgggcttgg ctcaccgggc
      901 atcgacgagc ttcgctggcg caaaccggtc tatcccggcg acacgcttcg cgtcagcggg
      961 gagattgtcg agaaaactcc atcgcgaagc aggcccgaac ttggatcgtt ccggacgagg
     1021 acgaccgtga ccaatcagcg cggcgaaacg gtcatgacct tcgtttcgat cgttctcatc
     1081 cgccgtcgtc caacgaccag cgagacggcc tagttcgccc tatccgcggt gatgggagcg
     1141 gccgccgctc attcccgaac ggctaaagcc actccagtta gcgccactcc aagagctgcc
     1201 ggtccgagct tggtagttcg cgcgccgaga cgtccaatag cgctgctgat caccgctcca
     1261 gcggtgtggc cggcgatagc tgtcgtagac gtacaagccg acgcccggat aatagaaatc
     1321 gccgtaccag ccgaaaggat cgtatccgcc ataatatccg tacgggtaag caccgtagcc
     1381 gtagggataa ccgccatagg cgtagccaac gccaacgccg ccatagccgt aaggtccgta
     1441 gagatcgtcg gcgcaagcgc cgagagccag tgtcgcccca gcaagggcaa gtgcaagacg
     1501 caaccgcatc ggtaaactcc tcgaatgaga ggttacaaca tcaatgcggt ggcgcttatg
     1561 cgcgttcccg cttgtcgcta agatgaatgg tatttcatct cagcgaggcg gcaggtcagc
     1621 aggtttttcg gcgcgggcgg cggatatgct acccggcaac accctgtttt gccttcgcgc
     1681 ggcgagtctt ggccttgttc tcgggctcga gaactccagt cactcgcact gcgcgcttcg
     1741 cctcatgcca gatctgctgg taggcaaggt agccgagaac ggtaccgaac agcaggaaga
     1801 tcacgacaga caaacccgcc gcatgacggt tttcgaggtt cggctcggcg gtccacacca
     1861 ggaacgcagc gacgtccttc gccatctggt cgacggtcga cggggttccg tcagcatagg
     1921 tcacctggcc attcgtggtc agcggtggcg gcatggcgat gttgaggttc gcaaaatacg
     1981 gattgtaatg caggtttggc ggggtcttcg cgtccgggaa cttcttcagg agctccgccg
     2041 gctgcggctg aaagcccgtc aggatcgaat aaacataggg agcgccaccc tcacgggcct
     2101 tagtgatcag cgaaaggtcc ggcggaaggg cattattgtt tgcggcgcgc gcagcggtct
     2161 cgttcgcgaa cggcggcggg aaggtatcgg agggcaaggc cttgcgtgtt gcgggttcgc
     2221 cggtgtccgg gttgatcgac ggcacctgag tcttccagtc ggacgcgatc ttcttaatct
     2281 cggcatcgtt atagccgagg cccttgaggt cgcggaacga aaccagtttc aagctgtgac
     2341 acgccgagca aacttccgaa tagacctgga aaccacgctg cagctgtcgc ttgtcgaact
     2401 tgccgaaagg accgtccgac gcgaggtgca acggcttggg gctcttgtgg aactcttcgg
     2461 aggcgagcgg cgccggaggg ctgctaagat tgcttgcaac gccactgatc aatgagatga
     2521 ggaggacgcc ggcgaagacc agaccgacaa gaaaaccaat gacacggacc atctgtctta
     2581 acgccccctt agtgcgccgt cgcggtggcg atcgagccgc cgctcgtgtt tgcgcccgcc
     2641 ggcgcagctt cggcagcttc accgtgaaga acgctttccg agatcgaact cggaagcggc
     2701 aacggtgtct cgaagcgtga gaccagcggg aggatcacga ggaaatgaag gaaataataa
     2761 gccgcgcaga tctggccgag cgcgttgcgg aatggcgttg gcgcgccgcc gcctgcccag
     2821 ccaaggatca acacatcgac cacgagcagc cagaagaacc gcttgaacac cggtcgatag
     2881 gagcccgatc gtaccggtga cttgtcaagc catggcagga agaaaaggag caggatggag
     2941 ctgaacattg cgagcacgcc ccacagcttc gccggaagga tgaagtcgaa cgtgaacgag
     3001 cgaaggatcg cgtagaacgg ccagaagtac cattcgggaa cgatctccgc cggcgtcgcg
     3061 agcgggttcg ccgggatgta attgtcagga tgtcccagat agttgggcgc gtagaaggtg
     3121 acgatgcaat agacgagcag gaacgcacca gcgaaccagc catccttcgc cgtgtagaag
     3181 ggatggaatg gcaaggtatc gcgctcatcc tttacgtcga ctcccgtcgg gttgctcgaa
     3241 cccgggatgt gcagcgccca gatgtggaga atgacaaccc cggcaatgac gaacggcagc
     3301 aaatagtgaa gcgagaagaa gcgggtcagc gcggcctggt cgggcgcata gccgccaagc
     3361 agccagatcc ggatcggttc gccgacgacg gggaaggccg aaaagaagcc ggtgatgacc
     3421 tgcgcgcccc agtagctcat ctgcccccag ggaagaacat atcccatgaa cgccgtggcc
     3481 atcatgagga agtagatgac gaggccaagc atccagacga gctcccgagg agccttgtac
     3541 gatccataat agagcccgcg gaaaatatgg atgtaggtca cgatgaagaa gaaacttgca
     3601 ccgttcatat gcgcgtaacg taacagccag ccggcattga cgtcgcgcat gatgagctgg
     3661 ttgacggaat tgaacgctcc gtccgtcgat gcggtatagt gcatcgcaag gacgatgccg
     3721 gtgatgatct ggatcgtcag gaagatgccc gcgaggacac cgaagttcca ccagtagttg
     3781 agattgcgcg gcacgggata gccgccaccg atggcgccat aaacgacgcg tggtagtggc
     3841 aggcgctcgt cgagccactt cattaccggg tgcttaggtt cgtagggctt ggcccaggaa
     3901 aagctcatgt ctccgcttac ccctttgcgc cgatcagaac tgtggtcggc gaactgaact
     3961 tgtaatcagg aacgaagagg ttctttggcg ccggcccctg ccgaatccgc gccgccgtgt
     4021 cgtactgcga gccgtgacag gggcagaagt agccgccgta cttgccgcgg ttctcacctt
     4081 cgccgatgcc gagcggcacg caaccaagat gcgtgcagac accaagcgtg atcaaccagt
     4141 tcttgtgtcc cggtttcgtg cgctcggcga gagtctgtgg atcacgcagc gacgatagcg
     4201 gaacagcatc agcctcgctg atttccctcg gcgtaagatt gcgaatgaag acgggctgct
     4261 tgcgccactg agccttgatt ccctgtccag gctggacctt ggagatgtcg acctccgtgg
     4321 tggcctgcgc aagcacgtcc gccgacggag ccatctgtac aaaaagcggc gcgatcgccg
     4381 ccactgctcc gacaccggcg aagctcacgg ccgcgacgtt caagaaatct cggcggcgca
     4441 cgccatcgcc gttggtatct gttgtttcgg gaccctcagc gggttgtgcc ttggtggcca
     4501 tcgtacccct ttgacgcgaa ttcggatgtg ccggacggca cctgtgcgac gccgcgccaa
     4561 ggtgcgacct cagcgcgatt ggcgggcctg atagcgaggg gattcggcac tgccaagggc
     4621 ctgcatgagg gaagcggtgc gaggttccgc gcgtgaccag cggttaggcg gctactggcg
     4681 cacgattcgg acgtatctcg gcggccagca acgcgccaaa tgcaaccagt ggagcaagcg
     4741 taagaaggaa cgtcagatga taccaaagag gaagcttgtt ccagacctgg atgtggactg
     4801 gaacgaacgc cgcaaggagt atcaggccaa gaatccagcc accccaccgg ctcgaaggcg
     4861 cgagaatttt gacgactgcg cccgatgcaa tcgaactcag cgccgcctcg gctagtcttc
     4921 cggccttcat catcgccgag aattgaagcg ttgcctcggc cgcgtggtag cccggaagcg
     4981 atgcacgcag accaaaattg aggagagtca cgatcaccac ccaggcgatg agaccagcaa
     5041 cgatcgcaat cccggtgcgc agcatgccga cccgtttccc tgttgattag tgaaatcata
     5101 ttagtttaat taaactatga acacaagact tttggtgctc ggcgtccttc accgggggaa
     5161 tttccatcct tacgagatca agcgtcggct caaggcagcc ctcgtcgagt gttacatcaa
     5221 cgtcgacgtc ggcacgctct actacgccgt gcgcgcatta gaaaaagaac gactgatcga
     5281 agaggcggct cgtgaagccg ttggccgcgg ggggatccgg acaatctacc gaatcacgac
     5341 gcaaggccgc cgcgagtttc gccagtgcct gcaacgcgaa atagaaagcg acggtccggt
     5401 tgcgccgtcg ctctatggag cgctgctgtt tctgcacctc gcggaccccg agcttgtgac
     5461 gaaggcgctt cgccaaaagg tcgagcatct cacggatttg atcgagaagc tcgaacccat
     5521 gcgccggcaa tttgcagatt cgctttccac gggtggcaag catctgctcg atcacatcga
     5581 gcagcagcgt cggctcgatc gcgagtggct aagggacctg cttgccgata tcgacgcgaa
     5641 cgggatcaag gatgtgaaag atccctcgaa gctcgctcga tcttaggaat tgggaatacg
     5701 gccgttgacg aggtcatgat aatccttcgt caactggcgg gtaagatcgc cgatctcgaa
     5761 attccacggc ccaacggatt tgaccggtgt gatttcaacc gccgtaccag tcaggaacat
     5821 ctgctggaag gactcgagtt cttcgggcca gatcgcccgt tcgttcactt cgattccgcg
     5881 cgaacgcgcg atttccatca cggtttggcg agtgatccca tcgagaaaac aatccgggac
     5941 gggcgtatgt aggacattgt cccgaacgaa aaacacgttt gcgccggttg cctctgcaac
     6001 gcggccgcgc cagtccaaca tcaacgcatc gttatagcca ttcgcctccg cgtgctgctt
     6061 ggagagcgtg cagatcatgt agaggcccga agcctttgat gcggtgggcg cggtataggg
     6121 tgctgggcgg cgccagggag cgatttcgag gcgaattcca ttatccgaga cgcggggatc
     6181 ataatatttg ccccattccc atgcagcgat cgcaagatgg ggcttcgtga tgcccggagc
     6241 cacacccatg gattctgatc cgcgccacgc gactggacgc atgtaggcat taatgaaccc
     6301 gttaatcttg agcacatcgt tacaggcctg gttgatctcc tcgacggtcc acggcagctc
     6361 gaagcccagt aggctcgcgc tcttgcgcag ccgctcgcta tgctcgttca atttgaacac
     6421 gacgccatta taggcgcgct gcccttcgaa cacgctgctc gcataatgta gcgcgtgggt
     6481 tagaacatga acccgcgcat ctcgccatgg caccatcgcg ccatcgagcc agatatagcc
     6541 gtcgcgatca tcgaaagtcg tggtctgggg cgccgccata gagcgcgcct aggacaggtg
     6601 agcggactca gcaagcgagc cagagcgcgc ttcctccgcc agctcggcac cacgccgacc
     6661 cgccgcctcg atcgtcgcgc cgacaagacg attgagtgac tggtgcgcgt cgaggacggc
     6721 aagcccagct tcggtcgtcc ctcttgggct cgcgacccgg cgagcgaccg aggccatgtc
     6781 ctcgcccgtc gtcgctgcca tccacgcagt cccaagcacc gtctcacgag caatgacaga
     6841 tgcgatttcc gcgctcagac ccgcctcctc cgcggcgcgg gcaagggcgg cgaggaagcg
     6901 cgctacatag gcgggcccgg caccggcaac cgagcccagt gcggcaagct tcgtctcgtc
     6961 ggccatccat attgcaaagc caagagccgc aaaaagattg ttgagttgtt cccgtgcctg
     7021 ttggtcggcg tccgtgctgt agaggccagt cacgccgcga cgaacggcaa cgggaagatt
     7081 gggggtcgcg cggacgattg ctgcgactcc gggaaagcgc cgtcgcaggc tcgtcgcttc
     7141 aaccccggcc agaagagaga cgaggatggt cttcgcacca aggaagcgcc tcagctcagc
     7201 ggcgacttga tcgagcttct gcggcttgaa cgccagcacg gcaagcgctg gcggcgaacc
     7261 ggcctcggcg tagctggtca ccactcgtgc tccagcgact gccgctccgc ttggacgaat
     7321 taccgtgacg ccactgacgt ctattccgcc gacgcgccag ccttcgagga tcgcgccgcc
     7381 catgttgccg catccgacga accatgtcgg ctgcggtagc ttaagtatgt cggtcatgct
     7441 tcgccgtgcg tatcaataag ggctgcagca attgcttcgc cgggtgattt accgccccaa
     7501 aggacgaact ggaatacggg gtagaaacgc tcgcattcct cgacagccgc ttccgcgatc
     7561 gcttccgctt gctcaaggct caacccctcg ccaccgcgcg catcgaggat cgtcgaatga
     7621 cggaagacga tgagaccgga gccagaccac atttcgaagt gaccaagcca aagctgttca
     7681 ttgatgaggc ttaatgcctc gaaaatcgcg gccctcttgt cgagcgatac ctttatgtcg
     7741 ggaaatgcga ggaactgcag gacctggtct tcgggccgcc agacgccgcg aagttcatat
     7801 tgtgcccagc ttccagcggc ggaagcgaca atttcgccct caccagttcg ctcgcaagcc
     7861 catccgcggg cttcgaaata ttgttcgaga acctcaatcg gcgcgccgtc atcacgctcg
     7921 tcctggactt cttcctcgct caggatcacg cctccgggct cgacttcttg ccgggtcgct
     7981 ttgcgccagc ggtgcccggg gtcgggccag cgatttttgc ttcaagggca gcgattcgcg
     8041 ccttcaatat ctcattctcg tcgcgcgctg ctccagccat cgctttcacg gcttcgaatt
     8101 cgtcacgacc cacgaaatcg gctccgccga tccactcctt gaacttttcg cgagcgctgg
     8161 actctgcctc acgacccatg cccgcaaaag tgccggcaaa gccgttcacc atcttcacaa
     8221 agtcgtcgaa catcctgttc tcggactgca tcgatcttcc tccctttagc cgcagaaata
     8281 gggtgtctcc gcccgatccg ccagccttgt ggccaagact atccccaact ggctcaacta
     8341 tccccaacta tcgctgcgct ccgcggagca aggaatggtt tgccactgga ttgaggtcct
     8401 cgatggtggc gttgagcatc gtcgcgaata tgagccaggc aagataaggg ataagaagca
     8461 gtcctgcagc cttcctcagc cgcaggaact ggcccgctgc ggcagccgca accgcggtca
     8521 tgacaaagat gatgatcttg gccagccgaa tgtcgtgcgc tttgaagaag atcggcgacc
     8581 aggtgaaatt cagcgcgagt tggatgaaga ataaagtcaa tgcggcctgc cggcgcgggg
     8641 atgcgggctc ggcgatgatc atcgcgaccg agacgcccat aagcgcataa aggattggcc
     8701 acgtgacggc gaacgcccag gcaggcggca tgaacggcgg cttctgaagc aggtcgaacc
     8761 aggaattgcg ataaccactg ttcgcaagcc aggcgcttgc accgccgaaa agctcaatga
     8821 gaatgatggc gatgagcgcg atccaaggcc atctgaggtc ccttgtcttt tcagccattg
     8881 cgctctgccc ccaagagaaa ttcggtattt ccctcagggc ccttaatcgg acttggaact
     8941 atccccaaga cgttccaccc tt
//
LOCUS       DASRBJ010000147         4376 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_221943,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000147 DASRBJ010000000
VERSION     DASRBJ010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4376
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221943"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..613
                     /locus_tag="VE968_04140"
     CDS             <1..613
                     /locus_tag="VE968_04140"
                     /inference="COORDINATES: protein motif:HMM:NF012246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0016984 - ribulose-bisphosphate
                     carboxylase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RuBisCO large subunit C-terminal-like
                     domain-containing protein"
                     /protein_id="HZU51046.1"
                     /translation="KWARKNDMILHLHRAGNSTYSRQKSHGMNFRVICKWMRMAGVDH
                     LHAGTVVGKLEGDPLMIKGFYDTLRSTETPVSLENGLFFPQEWASLNKVMPVASGGIH
                     AGQMHQLLDYLGEDVVLQFGGGTIGHPMGIQAGATANRVALETMVLARNEGRDIRKEG
                     PEILRDAAKWCQPLRAALDTWGDITFNYTSTDTSDFTPTAVAV"
     gene            646..1101
                     /locus_tag="VE968_04145"
     CDS             646..1101
                     /locus_tag="VE968_04145"
                     /inference="COORDINATES: protein motif:HMM:NF012329.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose bisphosphate carboxylase small subunit"
                     /protein_id="HZU51047.1"
                     /translation="MHVTQGTFSFLPELTDRQIAAQIEYCLRQEWAVSVEFTDDIHPR
                     NTYWEMWGLPMFDLRDAAGVMEEVRACREANPNVYVRVNAFDSTRGWETVRLSFLVQR
                     PAEEPGFRLDRGEGKGRTIRYALHTYASDQPAGQRYKSNQANVAKGDGR"
     gene            1098..2003
                     /gene="cbbX"
                     /locus_tag="VE968_04150"
     CDS             1098..2003
                     /gene="cbbX"
                     /locus_tag="VE968_04150"
                     /inference="COORDINATES: protein motif:HMM:TIGR02880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbbX protein"
                     /protein_id="HZU51048.1"
                     /translation="MSIPGPAAGFEANSSEVVDLKALQGDADIAATIAELDRDLVGLA
                     PVKQRIREIAAFLLVARAREQVGLIAGPPTLHMAFTGNPGTGKTTVALRMAGILHRLG
                     YVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLHRPENEKDYGQ
                     EAIEILLQVMENQREDLVVILAGYRDRMASFFVSNPGFRSRIAHHIDFPDYDTSELLA
                     IAELLAAQSEYRLSPAAREAMIEYITRRQQQPSFSNGRSIRNALDRARLRQAMRLCAG
                     NAVATREALQTIEAEDIRASRVFTI"
     gene            2035..3081
                     /locus_tag="VE968_04155"
     CDS             2035..3081
                     /locus_tag="VE968_04155"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: protein motif:HMM:NF006780.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HZU51049.1"
                     /translation="MHAHRSLQDHLEAWAGSDDLRLAVTKTVTALGEACREIATIIAV
                     GPLTGKLGALRANGSGGDFQTELDVRTNELLVKALSRAPVAAIASEEMDAPLPIWPGA
                     PIMVALDPLDGSSNIDTNVSVGTIFSLLHSLPGSSDTQPAAFLRAGREQVAAGYFLYG
                     PQTALALTLGEGTDLFTLDRHSGTFRLTAAAVRIPPLAREFAINASNYRHWDGPIRQW
                     FNECLAGAEGARGEDFNMRWIASMVAEAHRILMRGGVYLYPGDARQGYRNGRLRLLYE
                     ANPIGFLIEQAGGAASTGRERVLDRVPCLLHERVPFVFGGKEEVSRVEHYHLRPEALA
                     DRSPLFGERGLFRV"
     gene            3103..3981
                     /locus_tag="VE968_04160"
     CDS             3103..3981
                     /locus_tag="VE968_04160"
                     /EC_number="2.7.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008974 - phosphoribulokinase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribulokinase"
                     /protein_id="HZU51050.1"
                     /translation="MSARHPIISVTGSSGAGTTSVRRTFEQIFRREGISAAFIEGDAF
                     HRYDRIGMKTAMEQELKKGNVNFSHFGPEANLLEELEALFREYGENGTGRTRHYVHNI
                     DESEEYKQPPGTMTDWEALPENTDLLFYEGLHGAVMTDKVNTARYADLKIGVVPVINL
                     EWIQKIHRDKADRGYSDQAIVDIILRRMPDYVHFICPQFTQTDINFQRVPTVDTSNPF
                     IARWIPTADESMVVIRFRNPRGIDFAYLVTMIQDSFMSRANSIVIPGGKLDLAMQLIL
                     TPMILQLVEKRRRVIR"
     gene            4002..>4376
                     /locus_tag="VE968_04165"
     CDS             4002..>4376
                     /locus_tag="VE968_04165"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007014944.1"
                     /note="catalyzes the formation of ribose 5-phosphate and
                     xylulose 5-phosphate from sedoheptulose 7-phosphate and
                     glyceraldehyde 3-phosphate; can transfer ketol groups
                     between several groups; in Escherichia coli there are two
                     tkt genes, tktA expressed during exponential growth and
                     the tktB during stationary phase; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HZU51051.1"
                     /translation="MPSQIGPKSDQAIANAVRMLAADAVENAKSGHPGAPMGLADVAT
                     VLWRGYLRHNPANPAWVDRDRFVLSNGHASMLLYALLHLTGYDLPLSEIKRFRQLHSK
                     TPGHPEFGVTPGVETTTGPLGQG"
BASE COUNT          864 a         1376 c         1312 g          824 t
ORIGIN      
        1 caagtgggcg cgcaagaacg acatgatcct gcacttgcat cgcgcaggta actccaccta
       61 ttcgcgccag aagagccacg ggatgaactt ccgcgtcatc tgcaaatgga tgcgcatggc
      121 gggtgtggat cacctgcacg ccggcacggt ggtcgggaag ctcgagggcg atcctctcat
      181 gatcaagggc ttctacgaca ccttgcgcag caccgagacc ccggtgagcc tggagaacgg
      241 ccttttcttc ccgcaggagt gggcgtcgtt gaacaaggtc atgccggtgg cctcgggcgg
      301 cattcatgcc ggccagatgc accagctgct ggactatctt ggcgaagacg tcgtgctgca
      361 gttcggcggg ggcacgatcg gtcatccgat gggcatccag gccggcgcca ccgccaaccg
      421 cgttgccctc gaaacgatgg tgctggcgcg caacgagggc cgcgacatcc gtaaggaagg
      481 gccggaaatc cttcgcgacg ccgccaaatg gtgtcagccg ctgcgtgccg cgctcgacac
      541 ctggggcgac atcaccttca actacacgtc aaccgacacc tccgacttca ctccaaccgc
      601 cgttgccgtc tgagacatga ctgcaagtcc ccaggagagc tcgacatgca cgtaacccag
      661 ggcactttct cctttctgcc cgaactgacc gatcggcaga tcgccgcgca gatcgagtac
      721 tgcctgcggc aggaatgggc ggtgagcgtg gagttcaccg acgacattca cccccgcaat
      781 acctattggg aaatgtgggg tctgccgatg ttcgacctcc gcgacgccgc cggcgtcatg
      841 gaggaggtgc gcgcctgccg cgaggccaat ccgaacgtct atgtgcgggt caatgctttc
      901 gattcgaccc gtggatggga gacggtgcgc ttgtcgttcc tggttcagcg tccggcagaa
      961 gagcccggct tccgccttga tcgtggtgaa ggcaaaggcc gcaccatccg ctacgccctg
     1021 cacacctatg cttccgatca gccggccggc caacgctaca agtccaatca ggcaaatgtg
     1081 gcaaaaggcg acggacgatg agcattcccg ggcctgcggc cggtttcgag gcgaactcga
     1141 gcgaggtcgt ggatctcaaa gcgctgcagg gtgatgccga tatcgccgcg accatcgctg
     1201 agctcgatcg cgatctcgtc ggactcgcgc cggtcaagca gcgcattcgc gaaatcgcgg
     1261 cttttttgct ggtggcccgc gcgcgggagc aagtcgggct catagcggga ccgccgacgc
     1321 tgcacatggc gttcaccggc aatcccggca ccggcaagac gacggttgca ctgcgcatgg
     1381 ccggcatcct tcatcgcctc ggctacgtgc gcaaaggcca tcttgtctcg gtcacgcgtg
     1441 acgatctggt cggccaatac atcggccaca ccgcgccaaa aaccaaggaa gtcctgaagc
     1501 gtgcgatggg cggcgtgctg ttcatcgacg aggcttacta tctgcatcgc ccggagaacg
     1561 agaaggatta cgggcaggag gccatcgaaa tcctgctgca agtcatggag aatcagcggg
     1621 aggatctggt tgtcatcctg gcgggctatc gcgaccgcat ggcaagcttc ttcgtctcga
     1681 accccggctt ccgctcgcgc atcgcgcacc acatcgattt tcccgactac gacacaagcg
     1741 aactgctcgc catcgccgag ctgctggcgg cgcaaagcga gtatcgcctc agtcctgccg
     1801 cgcgcgaagc aatgatcgag tacatcacgc ggcgtcagca gcagcccagc ttctccaacg
     1861 gccgctcgat ccgcaacgcg ctcgaccgcg cgcggctgcg tcaagcaatg cgattgtgcg
     1921 ccggtaacgc ggtcgcgacc cgggaagcct tgcagaccat tgaagcagag gacattcgag
     1981 cgagccgcgt tttcacaatc tgatttgatc agattaccat cgcaggagcg tgccatgcat
     2041 gcccatcgca gtctgcaaga ccacttggag gcttgggccg gatctgacga cctgcgattg
     2101 gccgtgacga aaaccgtcac cgctttggga gaggcatgcc gcgagattgc aacgatcatc
     2161 gccgtgggcc cgctgaccgg caagttgggc gcgcttcgcg ccaatggatc gggcggcgac
     2221 ttccagactg agctcgatgt ccgcaccaat gagttgctgg tcaaagcact ctcgagagcg
     2281 cccgtcgccg ccatcgcgtc ggaagagatg gatgcaccgc tgccgatctg gccgggcgcg
     2341 cccattatgg tcgcgctcga tccgctggac ggctcctcca acatcgatac caacgtctcc
     2401 gtcggcacga tattttcgct gctgcatagt cttcccggca gcagcgacac ccagccggcg
     2461 gcgttcttgc gcgccggtcg cgagcaagtc gccgccggct atttccttta tgggccgcaa
     2521 acggccctcg ccctgactct cggcgagggc accgatctgt tcacgctcga ccggcatagc
     2581 gggacgttca ggcttacggc cgctgccgtg cgtatcccgc cgctggcccg cgagtttgcg
     2641 attaatgcgt ccaactaccg ccattgggac gggccgatcc ggcaatggtt caacgaatgc
     2701 ttggccggcg ccgagggcgc gcgcggtgaa gatttcaaca tgcgttggat tgcttcaatg
     2761 gtcgcagagg cgcatcgcat cctgatgcgc ggcggagtct atctgtatcc gggtgatgcc
     2821 cgacagggct atcgcaatgg gcggctacgc ctgctttatg aagccaatcc aatcggcttc
     2881 ctgatcgagc aggcgggagg cgccgcctcc accggccgtg aacgggtcct cgatcgtgta
     2941 ccgtgcctgt tgcacgagcg tgtgccattc gtgttcggtg gaaaggagga agtgtcgcgg
     3001 gtcgaacact atcatctccg cccggaagcc cttgcggatc gctcgccgct gttcggcgaa
     3061 cgcggcctct tccgtgtctg acgccaggcg aggaacagtc ccatgtcggc caggcatccg
     3121 atcatctccg tcaccggctc gtcgggtgct ggcaccacgt ccgttcggcg cacatttgaa
     3181 cagatttttc gccgggaagg gatctcggcg gcgttcatcg aaggcgacgc cttccatcgc
     3241 tatgaccgga tcggaatgaa aacagcgatg gaacaggaac tgaaaaaagg caacgtcaat
     3301 ttcagccatt ttggtccgga agccaatctg ctcgaagaac tcgaagcgct gttccgcgaa
     3361 tacggcgaga acggcaccgg ccgcacgcgg cattacgtcc acaacatcga tgaatccgaa
     3421 gaatacaagc aaccaccggg gacgatgacg gattgggaag cgctgcccga aaataccgat
     3481 ctcctattct atgaaggtct tcacggcgcg gtcatgaccg acaaggtgaa caccgcgcga
     3541 tacgccgatc tcaagatcgg cgttgtcccg gtcatcaacc ttgaatggat tcagaaaatt
     3601 caccgcgaca aggccgaccg cggctattcg gaccaggcga tcgtggacat cattctccgt
     3661 cgcatgcccg attatgtgca cttcatctgt ccgcaattca cacagaccga catcaatttc
     3721 cagcgtgtgc cgaccgtcga cacgtcgaac cccttcatcg cccgctggat accgaccgcc
     3781 gatgaatcga tggtggtcat tcgcttccgc aatccgcgcg gcatcgactt tgcctatctc
     3841 gtcaccatga ttcaagacag cttcatgtcg cgcgcaaatt caatcgtcat tcccggcggc
     3901 aagctcgatc tcgccatgca gctcatcctg acgccgatga ttctgcagct cgtcgagaag
     3961 cggcgtcgcg tcatccgata gggatgtgtg cgatgaattt aatgccctcc cagattggtc
     4021 ccaagagcga tcaggcgatc gcaaatgccg tgcgcatgct ggcggctgac gccgtagaga
     4081 atgcaaagtc gggacatccg ggtgctccga tgggcttggc ggatgtcgcg accgtattgt
     4141 ggcggggcta cctgcgacat aaccccgcga acccggcatg ggtcgatcgg gatagattcg
     4201 tgctgtcgaa cggccatgct tcgatgctgc tctatgcgct cctccatctc accggctatg
     4261 acctgcctct gagtgaaatc aagcgcttcc gtcagctgca ttcgaagact cccggtcacc
     4321 cggagtttgg agtgacgccg ggagtcgaaa cgacgaccgg cccgctgggc caaggc
//
LOCUS       DASRBJ010000148         8355 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_576204,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000148 DASRBJ010000000
VERSION     DASRBJ010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8355
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_576204"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..366
                     /locus_tag="VE968_04170"
     CDS             <1..366
                     /locus_tag="VE968_04170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HZU51052.1"
                     /translation="GALFEVGDGHAAQGNGEVDVTALETSLTGTLQFILHKGAKSSYP
                     RAETPSAYIAMGFDEDLSRATRKALSNMIDFLVERKGMSRDDAYMLISVAGDVEETEL
                     VDRNKGVHVVLAKALFTRQ"
     gene            complement(423..806)
                     /locus_tag="VE968_04175"
     CDS             complement(423..806)
                     /locus_tag="VE968_04175"
                     /inference="COORDINATES: protein motif:HMM:NF024609.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4019 domain-containing protein"
                     /protein_id="HZU51053.1"
                     /translation="MFTILLAFAIASEAPSTPDVSSANSWVGLVDSKRWNESWAAAGS
                     LFKARMPEASWASTIQPVREPLGAVSSRSLKSITRSTSLPGAPDGEYEVLQFETSFAN
                     KAAATETVVLSHEQSGWKVDGYFIR"
     gene            complement(914..1906)
                     /locus_tag="VE968_04180"
     CDS             complement(914..1906)
                     /locus_tag="VE968_04180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51054.1"
                     /translation="MIVALSLWVAALANISSRTEVPIKEVVLRDGTRRYAVPVSIAGH
                     AVEAGLDSGSVGLRALPDVAAGAAHSGSDKRYSYGVGTELIGPEADAMVSIGGLAKTI
                     PIQAVRAIGCIASHPDCPASRLSPDQFGIQGNGLPGQGFRAILGTGFAQSDVPNPLVA
                     LGAHRWIIELPLPGQRQDGRLVLNPTKEETAGFIPLALADARRDRKNDAVRSCLVKLG
                     TNLKICAPTLIDTGAPGIEIVNEGGRDWPEGTGGQFYFPLTDGRTASIQFQSGLRQQA
                     SHLMFVRDARVQGSRLRSGLIVYLAFDVLYDADQGTIAIRPRPAYPGGPLASIN"
     gene            complement(2065..2523)
                     /locus_tag="VE968_04185"
     CDS             complement(2065..2523)
                     /locus_tag="VE968_04185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007678718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51055.1"
                     /translation="MLFHLSIAADNPKHVANVIAEMWNGHAQPFPPVAENSWITFAGD
                     DRGSAIEVYPLGTMLHETEGDADAHGRQEGTDRFTATHAAIATDLEAEAILAIARREH
                     WPAKYRKRGDLFGVIELWIEGRQMMEVLTPEMQSEYLVAMRQMSDRLRHH"
     gene            2576..3253
                     /locus_tag="VE968_04190"
     CDS             2576..3253
                     /locus_tag="VE968_04190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HZU51056.1"
                     /translation="MSTLLDTFCAVDYRIDMTAPATAADRAPPRNKDQVRECLLDAFI
                     GLLIEGSSDLSHDAVAERAGVARRTAYRYFPDRGALMDAALLRVRELAGVRVAYPENI
                     DDLIDTLEPIYTGFDSIAPIATMLRSTPQGRQLRMAQNDQRIASYTRALAPAVENLPP
                     HDRKLATAMLQVLHTTPWLEMRDHWGLTGSEIARTTRWAIRALLKDLRERGGLSLDEE
                     LKDENAA"
     gene            3302..3478
                     /locus_tag="VE968_04195"
     CDS             3302..3478
                     /locus_tag="VE968_04195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51057.1"
                     /translation="MKSGAPGLAALIYAAVLVGVIIGVDVAFFRNRLWERLMVNIAIV
                     LFFGAFYLRFMRAS"
     gene            3516..3800
                     /locus_tag="VE968_04200"
     CDS             3516..3800
                     /locus_tag="VE968_04200"
                     /inference="COORDINATES: protein motif:HMM:NF024769.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HZU51058.1"
                     /translation="MSGEEAIAGGVVHDLPKDLEEALRLDVEARATWEDITPLARNEW
                     ICWIESAKKMETRQKRISWGCSNLRDGKRRPCCWPGCPHRVHRGQSGPGR"
     gene            complement(3823..4137)
                     /locus_tag="VE968_04205"
     CDS             complement(3823..4137)
                     /locus_tag="VE968_04205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51059.1"
                     /translation="MRKFILAAVAAITVGAAVPVAAQQIDQREHRQEQRIRQGEASGQ
                     LTRSEARRLQYREMRLHRLEARMRMRNGGRLAPWQRRRLQQMANRDSAAIYRKKHNER
                     TY"
     gene            4299..4814
                     /locus_tag="VE968_04210"
     CDS             4299..4814
                     /locus_tag="VE968_04210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51060.1"
                     /translation="MKILLEKGIGADVVEIRRNDGTVLSTSVPHKGPVPHDAVHFFVE
                     SELAMRAGFWGLVAGGRHPDAIGELAKQAGHASATRARSPDTVIVPAIQAERIVECFE
                     ADLWGGGCDPQTFNEMLEAGCAQSLVEPIDLATEVIASVRNELQHFKSTWEQMAIGAQ
                     CALEWPDDWKA"
     gene            4876..5571
                     /locus_tag="VE968_04215"
     CDS             4876..5571
                     /locus_tag="VE968_04215"
                     /inference="COORDINATES: protein motif:HMM:NF025433.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LssY C-terminal domain-containing protein"
                     /protein_id="HZU51061.1"
                     /translation="MRKLRTWHWISIAFLGILGLVLLWLVLAYGELPHLWSKHEHKKI
                     KPRDKIISYTSQDIPADPINLRLVGDDKSVRCAFARAGWSLADRLSARSAVGIVASVV
                     LQRPYSAAPVSSLYFQERLQDLAFEKDEGRSAHRRHHVRLWQLGPSQWLGAATYDRGV
                     GLALFTLEVTHHIGPNIDSERDSLGTMLQKAGATFEGAFPSRVPPNVRQRNGGGDSYF
                     TDGMIKSYQLPKC"
     gene            complement(5617..7395)
                     /locus_tag="VE968_04220"
     CDS             complement(5617..7395)
                     /locus_tag="VE968_04220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51062.1"
                     /translation="MKQKKPLLIAAAAALVTSPAAAQLTAVPHSGEQSIVVTGERAKG
                     AKPPEMSDWRVAETPHLLVFSKASPAELGRIALNLEKLHFLLSVLLNRVGTADQTLKL
                     SVTLIGDHADFDHLQLKNIRWQQGPYPPEFPNQIYYDPREDGAVMATAQADQCFALVR
                     DAVVLTPEDLESNIIGHSLPQSGVSVASSNSKCSSNPNMVAVSAESRLYSAFAQHFLL
                     TYFPAAYPRWYLEGFGEIFANMDARTAGVIEYGREPDRYPAIMDKFGHYPVRKILDGT
                     YLNDSHWTPAFSPYSAWALAHLLFFSPQWKVPLHNYLAAVARGESPQQAATAFGDIKK
                     LQAALSSYRGTRVSFERLTYPLSHFQPPLVRRLKKSEASCVRGRLELGARVTVADSAG
                     PAARKEIETRNQWLGALRQTATTYPAELADQQLLAEAECRSGNGSNCVAAADRALRLS
                     PSDPASLSWKGFGLALEAQALPRENRGTLLSEARSTIGRANHLDTESVLPLLAYYRSY
                     AIVGEQAPAVAVDGLAKALDEVPSAPATRLMLGSELTHEADPLDARRILLPIADGAFD
                     PPEKPAAQQLLSGLSIKAGSDSSEAR"
     gene            complement(7497..>8355)
                     /locus_tag="VE968_04225"
     CDS             complement(7497..>8355)
                     /locus_tag="VE968_04225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HZU51063.1"
                     /translation="TVNELRCFTDLGHKQGIHAPGLQLPDAAANQVRHHGVLAHGLAV
                     QAIRAHAKPQTRVGIADNTTFYVPVIETPEHIAAAKKATREMNAMFLTAIMEGRYIDE
                     YLAEAGTNAPKVLPGDMAAIGSPLDFVALNIYAPEWVRADSSPKGYSTISHIASSPHM
                     ASPWLIVGPEVAYWGIRQVSELWNPKVLYVSENGASADDPIQHGRIDDADRIMFLRNY
                     ITQFHRAVAEGYPLKGYFLWSLMDNFEWADGYSKRFGIHYVDFATQQRIPKLSAAWFK
                     EVIARNAVV"
BASE COUNT         1668 a         2443 c         2532 g         1712 t
ORIGIN      
        1 ggcgccctgt tcgaagttgg cgacggccac gcggcacagg gtaatggaga ggtcgacgta
       61 acggcacttg agacttcgct caccgggact ctccagttca tcttgcacaa aggcgcgaag
      121 tcatcatacc cgcgcgctga aacacccagc gcctatatag ccatgggctt cgacgaagat
      181 ctaagccgcg cgacgcgcaa ggcgctcagc aacatgatcg acttccttgt cgagcggaag
      241 ggaatgagtc gcgacgatgc ctatatgctc atcagtgtcg ccggcgatgt tgaagaaaca
      301 gagctcgttg accgcaacaa gggagttcat gtcgttctcg cgaaagcgct gttcacgagg
      361 caatgagacg ccccgcgcat tgcacgatca tgcgcagcta gcgcatcgaa tgtgctaatt
      421 ccctaacgga tgaaatagcc gtcgactttc cagcctgact gctcgtgcga gagcacaacc
      481 gtttccgtcg ctgcggcctt gttcgcaaag ctcgtctcaa actgcagcac ttcatattcg
      541 ccgtcgggag cacccggtaa cgatgtcgac cgggtgatgc tcttgagcga ccgcgatgac
      601 acggcgccaa gtggttcacg aacgggctga atcgtcgaag cccagcttgc ctcgggcatt
      661 cgcgccttga acaggctgcc cgcggccgcc cagctctcgt tccaccgttt tgagtcgacg
      721 agacctaccc agctattggc cgagctgacg tccggcgtgc ttggtgcctc gctagcgatc
      781 gcgaaggcaa gaaggatagt gaacatcaag cgctcctatc tatggttcgg ccgcctaatt
      841 catcttcccc atgcgtgatt tttgcaaggc tcgctggcaa gccttgttgg aggatgcttg
      901 cgtcgcgtgc gggtcaattg atcgaggcaa gcggtccgcc aggataagca gggcgagggc
      961 gaattgcgat cgtgccttga tccgcatcgt agaggacgtc gaacgccaga tagacaatca
     1021 gccccgaacg aagccgcgaa ccctgcactc gcgcgtcgcg cacgaacatc aggtgagacg
     1081 cttgctggcg gaggccggac tgaaactgaa tcgaggccgt ccggccgtcc gtcaatggga
     1141 aatagaactg cccaccggta ccttctggcc aatcgcggcc accctcgttg acgatctcga
     1201 ttccgggcgc tcccgtatcg atcaaggtcg gcgcacagat cttgagattg gtgccgagct
     1261 tcacgaggca gctgcgcacg gcatcattct tgcgatcacg tcgtgcatcc gcaagcgcca
     1321 gtggaatgaa gccagccgtc tcttccttag tagggttgag gacgagccgg ccgtcctgac
     1381 gctggccggg gagcggcagt tcgatgatcc agcggtgagc gccgagcgcg acgagggggt
     1441 ttggaacgtc cgattgtgca aagcctgtgc cgaggattgc tcgaaaccct tgacccggca
     1501 gtccatttcc ttggattccg aattggtcgg gcgaaagccg tgaagccggg cagtcgggat
     1561 gtgaggctat gcagccgatt gcgcgaacgg cctggatcgg aatcgtcttt gccaagccac
     1621 cgatactgac catggcgtcg gcttcagggc cgatgagttc cgtaccgacg ccgtagctat
     1681 agcgtttgtc actgccgcta tgcgctgcgc ccgcggcaac gtcggggagc gcgcgaagcc
     1741 caaccgagcc agagtcgagt cctgcttcga ccgcgtgacc ggcgatcgaa accgggaccg
     1801 cgtaacgacg cgtaccgtcc ctcagcacca cttccttgat tggtacttcg gttcggctag
     1861 atatgtttgc gagcgcagcg acccaaagcg acagcgcaac gatcatgcgg gaatctccag
     1921 acgtcttaga gtcgaagcgc ttgatacaag ttgatggcgc agggttcatc ctccgctgcg
     1981 agcggcggtc acatggaaag cctcggcgct tggctgctcg tcctcaaatc aacacgcgca
     2041 tttgccggtt gatcggatgt ctgtctaatg atggcgaagt cggtcgctca tctgacgcat
     2101 cgcgacaaga tattctgact gcatttcggg cgtcagaacc tccatcattt gccgcccttc
     2161 gatccagagt tcgataactc caaagaggtc gccacgcttg cggtacttgg cgggccagtg
     2221 ctcacgccga gcaatcgcga gtatggcttc agcttcaaga tccgtcgcga tcgccgcgtg
     2281 cgttgccgtg aagcgatccg tgccctcttg gcggccatga gcgtcggcgt cgccttcggt
     2341 ttcgtgcagc atggtcccaa gcgggtagac ctcgatcgca cttccccgat catcgcccgc
     2401 aaacgtgatc cagctgtttt cggcaacagg aggaaagggt tgtgcatgcc cgttccacat
     2461 ctcggcgatc acattggcga catgcttcgg attatcagca gcgatggata ggtggaacag
     2521 catgaagcct ccgtcggcga ttcgttcgcc cctcattaga taggtggcac aaattgtgtc
     2581 aacactactt gacacttttt gtgccgtcga ttaccggatc gacatgacag ctcccgcgac
     2641 ggccgcggac cgcgcacctc cacggaacaa agatcaggtg cgcgagtgcc tcctcgatgc
     2701 gttcattggt ctcctcatcg aaggttcgtc ggatctcagc catgacgcgg ttgccgagcg
     2761 cgccggagtc gcacgacgaa cggcctaccg ctacttcccg gaccgtggcg cattgatgga
     2821 cgccgcgctg ctgcgcgtgc gcgagcttgc tggcgtaaga gtggcttacc ccgaaaacat
     2881 cgacgacctg atcgacacgc tcgaaccaat ttacacaggc ttcgattcga tcgctcccat
     2941 cgcaacgatg ctgcgttcca ctccacaagg tcgacaattg cgcatggcgc aaaacgatca
     3001 gaggatcgcc agctacacgc gcgcgcttgc tccggctgtc gaaaatcttc cgccacatga
     3061 tcgcaagctt gcgaccgcga tgctacaagt actgcacacg acgccgtggc tggagatgcg
     3121 cgatcactgg ggtctcaccg gcagtgaaat cgcgcgaacg acaagatggg cgatccgcgc
     3181 actactcaag gacctacgcg agcggggggg cttgtcgctc gacgaggaat tgaaggacga
     3241 gaatgccgct tagttatcga ggctcgcccg gcacggcagg cgccgaggcg aatgaacggc
     3301 gatgaaaagc ggcgcacccg gtcttgcggc cctaatctac gccgccgtgt tggtcggcgt
     3361 aattattggc gtcgatgtcg cgttctttcg taaccggttg tgggagcgat tgatggtgaa
     3421 cattgcgatc gttctatttt tcggagcctt ctatttgcgt ttcatgcgcg cgtcgtgaca
     3481 tcgagtgtcc ggctaaaccc taggcggagc aagcagtgag tggcgaagaa gcgatcgccg
     3541 gcggcgtcgt ccacgatctc ccgaaagatc ttgaagaagc gcttagactt gacgttgaag
     3601 cgcgcgccac ctgggaggac attacgccgc ttgcccgcaa tgaatggatt tgctggattg
     3661 aatcggcgaa aaaaatggaa acgcggcaaa agcgaataag ctggggctgt tcaaacctga
     3721 gggacggtaa gcgtcgacct tgctgctggc ctggctgccc gcaccgcgtc caccgaggac
     3781 agagcgggcc tggtcgatga tcgcaccagg cccgcaccag atttagtatg tgcgttcgtt
     3841 gtgcttcttt cgatagatcg ccgcactgtc gcggttcgcc atctgctgca ggcgccgccg
     3901 ctgccagggc gcaagccgtc caccgttacg catgcgcatc cgcgcctcaa gccgatgcag
     3961 tcgcatttct cgatattgga ggcgccgcgc ttcggaacgc gtgagttgac cgctcgcctc
     4021 gccctggcga atacgctgtt cctgtcgatg ctcgcgttgg tcgatctgct gcgctgccac
     4081 cggcaccgcc gcgccgacgg tgattgcggc aactgccgcg aggatgaact tcctcattac
     4141 gctactcctt cttggatggc ggcagcccgc acgcgttcgc ccaaggccgc cgcagtcgca
     4201 tctaaaacga tgtcgctcgg ccacgagttg caatgttaca tgttcttcac cgagcctcca
     4261 gaatttggct cgagagagat tgacgcatag gtgagtgaat gaagatcctc ctcgaaaaag
     4321 gcattggagc ggatgtcgtc gagatcaggc gaaacgacgg cacagtgctc agcacgagcg
     4381 tgccacacaa aggtccggtg ccgcacgacg ccgtccactt cttcgttgaa tctgaactcg
     4441 ccatgcgtgc gggattctgg ggcctggtcg ctggtggtcg tcatcccgac gccatcggcg
     4501 aactcgccaa gcaagccgga catgcgagcg caacgcgagc gcgatcgccc gacacggtca
     4561 tcgtccccgc aatacaggcg gaacggatcg tcgagtgctt cgaagccgat ttatggggcg
     4621 gcggttgcga tccgcagacg ttcaatgaga tgctcgaggc tggatgcgcg cagtcgctcg
     4681 tcgaaccgat cgacctcgcg accgaggtga tcgcgagcgt gcggaacgag cttcaacact
     4741 tcaagtcgac atgggagcaa atggccatcg gtgcccaatg tgcattggag tggccggacg
     4801 attggaaagc ctgaccttca acagggccgt tgctcggtca ttgcagatgc ttctttccaa
     4861 catatgctgt ggagcgtgag aaagcttcga acctggcatt ggataagcat cgcgtttctc
     4921 ggcatcctcg gcctcgtcct cctgtggcta gtccttgctt atggcgaact tccgcacctg
     4981 tggagcaagc atgagcacaa gaagattaag ccgagggaca agatcatctc ctatacgtcg
     5041 caggatattc cagcagaccc catcaatctg cggcttgtcg gcgacgataa gtccgtccgg
     5101 tgtgcattcg cccgggccgg ttggtcgctt gccgatcgac tctccgcgcg gtcggcggtg
     5161 gggatcgtcg caagtgttgt cctgcagcgc ccttatagcg ccgctccggt gagctcactt
     5221 tatttccagg aacgattaca ggatctcgca ttcgaaaagg acgaaggacg gagcgcgcat
     5281 cggcggcatc atgtgcggct ttggcagctg gggccgtcgc agtggttggg agcggctacc
     5341 tatgatcgcg gcgtcggcct tgcgctgttc acgctcgaag tcacgcacca tatcgggccc
     5401 aatatcgatt ccgaacggga ctcactcgga acaatgctgc aaaaagccgg cgcaacgttc
     5461 gagggagcct ttccttcgcg cgtcccgcca aatgtccgcc agcggaacgg cggtggtgac
     5521 tcttacttca cggacgggat gatcaagagc taccagcttc caaaatgcta aaagcgccga
     5581 ccctttgcgc gcatcagcgg ctggaccgac acggatttac cgcgcctcgg atgagtccga
     5641 gccggccttg atcgaaaggc ctgaaagcag ctgctgagcc gccggttttt ccggtgggtc
     5701 gaaggcgccg tcggcaatcg gcagcaggat ccggcgcgcg tcgagagggt ctgcttcgtg
     5761 agtcagttcg gagccaagca tcaatcgggt ggccggcgca gaaggtactt catcgagtgc
     5821 ctttgcaagt ccgtcgacgg ccacggcggg cgcctgttcg ccgacaatcg catagcttcg
     5881 ataataagca aggagcggaa ggacggactc ggtgtcgagg tggttcgccc ggccaatcgt
     5941 gctgcgtgcc tcgctgagaa gcgtgccgcg gttctctctc ggcaaggctt gcgcttccag
     6001 tgcaagacca aaccccttcc atgacaagga ggctgggtca cttggcgaga gacgaagtgc
     6061 ccggtctgca gcggcgacac aattgctccc gttaccgctc cggcactcgg cttcagcgag
     6121 cagctgttga tccgcaagct cggccgggta ggttgttgct gtctgcctta acgcgccgag
     6181 ccactgattg cgcgtctcga tttccttcct ggccgcaggt ccggcgctgt ccgcgaccgt
     6241 aacgcgtgcg ccaagttcca ggcgtccgcg gacacagctt gcttcgctct tcttgagacg
     6301 ccggacgagg ggaggctgga aatggctgag tggataggtc aggcgttcga acgaaacacg
     6361 cgttccgcga taggaactca gtgcggcttg aagtttcttg atgtcgccaa aggccgtcgc
     6421 cgcttgttgc ggactctcgc cgcgggcaac cgcagcgaga taattgtgaa gcggaacctt
     6481 ccactgcggt gaaaagaaca gaaggtgggc gagcgcccag gcactgtagg gcgagaatgc
     6541 gggagtccaa tggctgtcat taagataggt gccatcaagt atcttccgga cgggatagtg
     6601 gccgaacttg tccatgatcg ccgggtaacg gtcaggctcg cgcccatatt caatgacccc
     6661 agcggtccgc gcgtccatgt tcgcgaagat ttcgccgaac ccttcaaggt accagcgggg
     6721 gtatgccgcc ggaaaatagg taagcaggaa atgctgcgcg aacgccgagt agagccggct
     6781 ttcggcgctc accgcaacca tgttcggatt gctgctgcat ttgctgttgc tcgaggcaac
     6841 cgacacgccg ctttgcggca gcgaatggcc aattatgttc gattcgaggt cttcgggcgt
     6901 taaaacgacc gcatccctaa cgagggcgaa gcactggtcg gcctgtgccg tcgccatgac
     6961 cgctccgtcc tcgcgtgggt cgtaatagat ctggttcgga aactcgggcg ggtaggggcc
     7021 ttgctgccaa cggatattct ttaattgcag atgatcgaaa tcggcatgat caccgatcag
     7081 cgttacgctc agcttcaatg tctggtcggc ggtgccgacg cggttgagca acaccgatag
     7141 gaggaaatgc agcttctcaa ggttcaacgc aattcggccg agctctgctg ggctcgcttt
     7201 gctgaacacg agcaggtgtg gagtttcggc tactcgccag tcgctcatct ccggaggctt
     7261 ggcacccttc gcacgctcgc ccgtgacgac gatgctttgt tcacccgaat gcggaacagc
     7321 ggtgagctgc gccgccgccg gtgaagtgac aagggcggcc gccgctgcaa tcaagagagg
     7381 cttcttctgc ttcacacgcg cactcctaag ctggaattcg ccgctcgcat ttacatcaaa
     7441 tctcgaagct ttccgaccgg ctgtggatcg ctctggaacg ggcttctctt gcgacgtcac
     7501 acgacggcgt tcctcgcaat gacctccttg aaccaggcgg cgcttagctt tgggatgcgc
     7561 tgttgggtcg caaaatcgac ataatggatt ccaaaccgtt tgctgtagcc gtcagcccac
     7621 tcgaaattat ccattagact ccacaggaaa tagcctttca gtggatatcc ttcagcaacc
     7681 gcgcggtgga attgcgtgat atagttgcga agaaacatga tccggtcggc atcgtcgatc
     7741 cggccatgtt gaatgggatc atccgccgat gcgccattct ccgagacata aagcaccttg
     7801 gggttccaca attcgctgac ttggcggatc ccccaatagg caacctcggg gccaacgatg
     7861 agccatggcg aggccatgtg gggggaagag gcgatgtgcg atattgtcga atagcccttg
     7921 ggtgaggaat cggcgcgaac ccactccggc gcgtagatgt tgagcgcgac gaaatcgagc
     7981 gggctcccga tcgccgccat gtcgcctgga agaaccttcg gcgcgttcgt tccggcttcg
     8041 gccagatatt cgtcgatgta gcggccttcc atgatggccg tgaggaacat ggcgttcatt
     8101 tcgcgcgtgg ccttcttggc ggcggcgata tgctccggtg tttcgattac cggtacatag
     8161 aaggttgtat tgtccgcgat tccaaccctt gtttgaggct ttgcgtgtgc tcggattgcc
     8221 tgcacggcga gaccgtgtgc gaggacacca tggtgccgca cctggttcgc cgcagcatca
     8281 ggcaattgga gacccggcgc atgaatgcct tgcttgtggc caagatcggt gaagcagcgc
     8341 agttcattga ccgtc
//
LOCUS       DASRBJ010000149        12918 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_576562,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000149 DASRBJ010000000
VERSION     DASRBJ010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 12918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12918
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_576562"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..995)
                     /locus_tag="VE968_04230"
     CDS             complement(<1..995)
                     /locus_tag="VE968_04230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HZU51064.1"
                     /translation="MLMMPHPTVQARFRDWPFAVKSILGFWLFYALTVLVRAFLGTDP
                     WTTVENKLALVVFGIIINGLIYLAIAGLTTGATVRRKVVVAAISCAVGSIILGGAVVA
                     SEDWMRESKEEFRFQAREGFTVVEQGSQLRIERTAQEPLILTMPKVHELDPMQRVRYA
                     LDVAVTWLFFFIGWTAFYIASEAQATALGAQRRLADAESAAQAAQVRALRYQVNPHFL
                     FNTLNSLSSLVMTGRTDRAETMLLALSTFFRTSLSLDPSADVSLAEEIELQRLYLDIE
                     MARFPDRLTVEIDVPAELKQARMPALLLQPIVENAIKYGVSRSRKAVVIRIDARHL"
     gene            1151..1372
                     /locus_tag="VE968_04235"
     CDS             1151..1372
                     /locus_tag="VE968_04235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51065.1"
                     /translation="MNGDKVRADIVPPAVFSAPPERELEHKLKQSPDDEQLKVDVGSD
                     ESMDASDPPSASQPGNSREPAPSSAFPDR"
     gene            1575..2123
                     /locus_tag="VE968_04240"
     CDS             1575..2123
                     /locus_tag="VE968_04240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51066.1"
                     /translation="MTRTSQPASGAMLISEMKEFAGFSKATQRYIRRSLDVAYGRRDP
                     IECWARDEGEAASIRAQARLYKQLDHLRLQVPDDSGLDMIEPFVGMLITISAFDLGQD
                     RLPNFAAYRFLYERLIGAAARPWLPSAFCAAAALPHLHPDRRRTLLQSISESAATAPG
                     WSSREPVFWPEWVEKVDSKAAA"
     gene            complement(2106..2615)
                     /locus_tag="VE968_04245"
     CDS             complement(2106..2615)
                     /locus_tag="VE968_04245"
                     /inference="COORDINATES: protein motif:HMM:NF018627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51067.1"
                     /translation="MAERRLFLDADGVLADFDEGAKRLLGMAPQEYEARHGRGAFWKR
                     LARAKNFYGTLPEMPDAQVLFRAVQHLQPTILTGLPIGGWAAPQKVEWAAAHFPGVPI
                     ITCMARDKHRHMNEGDVLVDDRENHRLAYEAAGVIFVHHRNAEESLRRLAKLFPSVEW
                     PEKNLGGRL"
     gene            complement(2615..2995)
                     /locus_tag="VE968_04250"
     CDS             complement(2615..2995)
                     /locus_tag="VE968_04250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007685195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51068.1"
                     /translation="MAKPWTVTGWKLARGERDFLLQRFPPKYENVIADHVTLKTGTNG
                     ETPLPPRPKSARIVGRADDGRSLECLVVELDGTSDRPDGSIYHITWSLGPTRKARESN
                     DLLRTRDWKTLATPVDLTLEPARF"
     gene            complement(3067..4467)
                     /locus_tag="VE968_04255"
     CDS             complement(3067..4467)
                     /locus_tag="VE968_04255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003040083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HZU51069.1"
                     /translation="MADSPVFFSGIGGSGMLPLASIVRASGAKVAGSDRSLDAGRTPH
                     KFDYLRSLGIQLYPQDGSGLQPGMTLVTSAAVEPNVPDVVRANELGLVHLTRPQFLAG
                     LLNAAQRSVAVGGTSGKSTVTGMIGWILHACHRQPTVMNGAVMKNFVTPSAPFASALV
                     GDPELFVSEVDESDGSIALYKADVAVLTNISLDHKEMAELRQLFGGFLNSAKKAVLNL
                     DDPETRILAEAVARDKVVGYGFDSPGAAFMGKDLKLEGYGLTFALEADGQRYEVRLGV
                     PGHHNASNALAAIAATRLLGVRIEDAVSALGRFAGLRRRLEIVGESAGVTVIDDFAHN
                     PDKIAASLATLRAQPGRLLIMFQPHGYGPLAKMGEPLAQSLADGMAPDDHLYLPDPVY
                     QGGTVEKVHGSDWLAEQVRRHGKQADHVALRADIGTKLASEARSGDRILIMGARDDTL
                     IDFARDVLEKLSSASH"
     gene            complement(4565..5083)
                     /locus_tag="VE968_04260"
     CDS             complement(4565..5083)
                     /locus_tag="VE968_04260"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HZU51070.1"
                     /translation="MSQVLLFERASPSFAAGLAQRGHHIVYRANSSNHCPGCGRSHWY
                     IGRVSAECGFCGTAIPLAEARHDDTISPVTRPTSFTSPDQRKHRRVPAKGRTLQLLID
                     GSPTSFALENISEGGAMGENPSDLAPGARVHVRFEGGILVPAEVKWAEDGLLGLAFLT
                     SVKLDPSERSTN"
     gene            5186..5998
                     /locus_tag="VE968_04265"
     CDS             5186..5998
                     /locus_tag="VE968_04265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HZU51071.1"
                     /translation="MRIAIVAPSCTLNKDAAQEVEGIARSRGDCELIIHPQCFLSEGH
                     FAGSDEDRLHALREVMADASVDAVWFARGGYGSNRIAEAALGDLPQAGRSKIYMGYSD
                     AGFLLGGLHRKGLEVAWGPMPQDVLRTGGHEAINRALDWLACKDASAIEPAIDGPAMA
                     FNLTVLSNLLGTSLEPDFTGIDLLVEDVGEHLYRIDRSMFHVSASKSIQKVRRLRLGR
                     VSDILPNDPNFGLDEVEIVEQWCARSGILFGGRADIGHDAQNHVVPFPSAKR"
     gene            6076..6342
                     /locus_tag="VE968_04270"
     CDS             6076..6342
                     /locus_tag="VE968_04270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SWIB/MDM2 domain-containing protein"
                     /protein_id="HZU51072.1"
                     /translation="MAQGSRKAGGGLARPVTPSADLAQICGSQPLPRSQVVSKVWDHI
                     RKNNLQNPQNKREILADDKLKKVFGGKDKVSMFEMNKHLSNHLK"
     gene            complement(6430..7170)
                     /locus_tag="VE968_04275"
     CDS             complement(6430..7170)
                     /locus_tag="VE968_04275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HZU51073.1"
                     /translation="MSDEAIPAATLIVVRDRPAEPPELLMVERARSMAFAAGAWVFPG
                     GRIDEQDRQLGSSSALHPGAVAAIRETLEETAIPVGISPVPSKSQARAMQKALIAGQP
                     FAHVLEEGHLELDGSALIPFARWVPKFHAVRRFDTFFFVAPSAPGDWEPAVVEGECAQ
                     AAWLSAPEVLEREARGEARLIFPTRRNLERLAQHSSFAAIRNDAVSHPVEPISPWVEE
                     REGEQFITIPGDLGYPITSERLEGLWRG"
     gene            complement(7186..7455)
                     /locus_tag="VE968_04280"
     CDS             complement(7186..7455)
                     /locus_tag="VE968_04280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51074.1"
                     /translation="MKRLAFVTIGTAALALAACNKNNPDAVDNAEINQPQADQLNDLA
                     NQAAQDAANAQAAANNAQQAANEANAVADNTTNPKEADEQNVSGM"
     gene            7505..7889
                     /gene="ssrA"
                     /locus_tag="VE968_04285"
     tmRNA           7505..7889
                     /gene="ssrA"
                     /locus_tag="VE968_04285"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01849"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="alphaproteobacterial-type; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01849"
     gene            8040..8894
                     /locus_tag="VE968_04290"
     CDS             8040..8894
                     /locus_tag="VE968_04290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51075.1"
                     /translation="MHHWTKRLFTLAAPLLLTGCLWGPGKFTSDLTLRKDGSFVLDYR
                     GEIVLQLPDGEYKPSPWKDTMAQCYRSGRVTWIPATGVPAITLPDDPPRPCTPSEIAK
                     AKSQHQQHETQAVVEDRKKSEEAAKAFGLPGLDDASNRAFAAKLMKYAGWRSVAYRGN
                     GVFDVDYHLEGRATQDFIFPALPDNDLLIPFIAIRRRADGSVLVNAPALTGGAGPMAA
                     RAGAGAMEGMKGGPVSRAQGRFTVITDGEILTNNSEDGPAPHAIGHQLHWDVGPASNK
                     IPETLIRL"
     gene            8978..11014
                     /locus_tag="VE968_04295"
     CDS             8978..11014
                     /locus_tag="VE968_04295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HZU51076.1"
                     /translation="MRRSVLAAILATCASAAFAAPTPKEQLLVPPANATHFVVVSTAG
                     KHGDEYMWTLPDGRLAFRESILLRGLTFETDETMRLGADGMPTDVVIRGVTPSGDAAE
                     TFAMVNGTASWKSPVDEGHTAYSAPAYYLAQGGPFLTTAPEIDRLMAAGNAGLTLLPS
                     GRADFDKVTSLEVDGPQGKKTVDLIMVKGVGQSPQPVWVENGKFFGQLVGLNLLPAGY
                     EGNAEKMQAAQDAAIAAMAPAIAAKFLTPEAKRPVLFSNVKMYDADRQRFLEHRYVLT
                     SGGKIVSIGAAAPAKLPAGTRKIDGKGKTLVPGLWDSHMHVGDDFQTVSELALGVTNC
                     RNPGGPIELEVSQRERRNAGKLLAPECWDSVIVDQKGPLVAQGSLAVTSLDETLAAVR
                     KIAANHLTAVKFYTSMKPEWIAPGAKLAHQLGLHVHGHIPAHMRTMDAINAGYDEITH
                     IYFATMQAMPQEVVDKANTTMRMLGPGKYFKDVNLDAEPMKTVIATMAKKHIVLDPTL
                     VVVEGVLLADAGTPAPAYAPYMGTVPATVERGFKSGHIPYLPGMTRADAQASVDHMGQ
                     YVAKLFHAGVPIVAGTDGYGYELVRELELYVKGGLTPAEALATATINPARNVKAANRT
                     GSIVVGKEADLLLVDGDPEKNIGDLRHVDQVMSDGYLMDGNALRSAAGYSGMPK"
     gene            complement(11202..11627)
                     /gene="mscL"
                     /locus_tag="VE968_04300"
     CDS             complement(11202..11627)
                     /gene="mscL"
                     /locus_tag="VE968_04300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HZU51077.1"
                     /translation="MLKDFRAFIAKGNVLDLAVAVIIGAAFAKIVTSLTDDIIMPIVG
                     KIFGGLDFSSHFLLMGPVPAGYHGSMTDYAALKKAGAPVLGWGQFVTEVVSFLILAFI
                     IFLMVRWATKLMKKPDAAAAGPTEVELLTEIRDELRKRA"
     gene            11789..12388
                     /locus_tag="VE968_04305"
     CDS             11789..12388
                     /locus_tag="VE968_04305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007713913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HZU51078.1"
                     /translation="MTALRRFGLLAPAMAIGLSACGINAVPTEEEKVNAAWGNLQADY
                     QRRADLIPNLVNTVKGYAQQEKTVLTQVTEARAKATSIQLNANDLSDPAKVQAFQNAQ
                     NQLGGSLGRLLATFEAYPDLKSNQNFLALQDQLEGTENRINASRRDYNSAVQEYNTTI
                     RTFPDAIGAKIFYGAKPKVPFEAAAAAQQAPTVNFGNGS"
     gene            12391..>12918
                     /locus_tag="VE968_04310"
     CDS             12391..>12918
                     /locus_tag="VE968_04310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HZU51079.1"
                     /translation="MLVIPAKAGTQSKKIWAPAFAGVTIWALVLAFFALAAPATAQTF
                     PANNGSPVVDQAGILTPEQVADLTSKAQALYAQSGRAFAVATVNSLEGYPIEDYAYRL
                     GRAWGLGQKGKDDGVLLLVAPNERKVWIATGYGAGAFMTDAMSGIIIREDILPHFKQK
                     PPDYGGGIEAGADAII"
BASE COUNT         2547 a         3986 c         3979 g         2406 t
ORIGIN      
        1 aggtgccgag catcgatcct gatcaccact gccttgcgac ttctcgacac accatatttg
       61 atcgcgtttt cgacgatggg ctgcagcaga agcgcaggca ttcgtgcctg cttcagttca
      121 gcgggtacgt cgatttcgac ggtcagcctg tccgggaagc gcgccatttc gatgtcgaga
      181 taaagtcgtt gcagctcgat ctcctcggcg aggctgacat cggcgctggg atcgagtgaa
      241 aggctcgtgc gaaagaaagt cgaaagagcg agcaacatcg tctcggctcg gtccgtgcgt
      301 ccggtcatga cgagcgacga tagcgaattg agcgtgttga acaggaagtg agggttcacc
      361 tggtagcgaa gcgcgcgaac ttgcgctgcc tgtgccgcgc tctccgcatc ggcgagccga
      421 cgctgggcgc caagtgccgt cgcttgcgct tcgctcgcga tgtaaaaggc agtccagccg
      481 atgaagaaga acaaccacgt gaccgcgaca tcgagcgcgt agcggacgcg ctgcatcggg
      541 tcgagttcgt gcaccttggg catggtgaga ataagaggct cctgcgcggt tcgctcgatc
      601 cgcaattggc tgccctgctc gacaaccgtg aagccttccc gcgcttgaaa gcggaattct
      661 tccttgcttt cccgcatcca gtcttcgctg gcgacgaccg cgccgccaag gataattgat
      721 ccaaccgcgc agctgatcgc ggcgacgacc accttgcgcc gtacggttgc tcccgtggtg
      781 aggcccgcaa tggcgaggta aatgagtcca tttatgatga tcccaaagac taccagggca
      841 agcttgttct caacggtggt ccagggatcg gtaccaagga acgcccttac gaggacggtg
      901 agggcataga acagccagaa tccaaggatc gatttgacgg cgaacggcca gtcacgaaaa
      961 cgtgcctgga cggtcggatg tggcatcatg agcattggtg ctgtcatgtc ccaaaactcc
     1021 cctgccgcaa accgccgcct gcccattggc agaagcgcgg ctgcatccgg tcgaaacgcg
     1081 acgtaatacg gaacgcgcga gcacctccgc tcgtttctga tctgcaatgg tacgtcatgg
     1141 agagggcgct gtgaacggag acaaggttag agcggatatt gtccctccag cggtgttctc
     1201 ggcgccgccg gaacgcgagc tcgagcacaa gctcaagcag agcccggacg acgagcagct
     1261 gaaagtcgat gttggtagtg acgaatcgat ggacgcctcc gaccctccgt ccgcaagcca
     1321 gcccggcaac tcgcgggagc ctgctccctc gtcggctttc ccggaccgct aaaggggcac
     1381 gaaccaatcc tcaacatccg cgccgcgttg cttcaaatca acaatccaca gttttaagga
     1441 tgtcggtgga tttctgacct agacgccgtg ccacccctct gattcaatct gaaccggggg
     1501 tgggactgtg gttaagcaat atgcaaccat ctgcgccgca tgatcccgcc agggcaagag
     1561 gagtcgggtt catgattacg cggaccagcc agccggcgag cggcgcgatg ctgatctcgg
     1621 aaatgaagga gtttgcgggc ttttcgaagg ccacgcagcg ctacattcgc cgatcgctcg
     1681 atgtggctta cggtcgccgt gatccgattg agtgctgggc acgcgacgag ggcgaagcag
     1741 cgtcgatccg tgcgcaggcg cgtctttaca agcagctcga tcatcttcgg ctgcaggtac
     1801 cggacgacag tggcctcgac atgatcgagc cgttcgtcgg tatgctgatc actatttcgg
     1861 cgttcgatct gggccaggac cggttgccga actttgctgc ctaccgtttc ctttacgagc
     1921 gcctcatcgg cgccgccgcg cgtccctggc tgccgagcgc tttctgcgca gctgcggcac
     1981 ttccgcacct gcaccccgat cggcgccgga cgctgctgca atcgatcagc gaaagcgcgg
     2041 caacagcgcc cggctggtcg agccgagagc cggttttctg gcccgaatgg gtcgaaaagg
     2101 tcgattcaaa ggcggccgcc taagttcttc tccggccact caaccgacgg aaacaacttg
     2161 gccaagcgcc ggaggctctc ctcggcattt cggtgatgca cgaagatgac cccggcggct
     2221 tcgtaggcca accggtggtt ctcgcgatca tcgacgagta cgtcgccttc attcatgtgc
     2281 ctgtgcttgt cgcgagccat gcacgtgatg atgggaactc cgggaaagtg cgctgctgcc
     2341 cactcgacct tctgcggtgc ggcccagccg ccgatcggca acccggtgag aatcgttggt
     2401 tgcagatgct gcacggcacg gaagagaact tgcgcatccg gcatctcagg caacgtcccg
     2461 tagaaatttt tcgcgcgcgc cagtcttttc cagaatgctc cgcgcccgtg cctagcctca
     2521 tactcctgcg gagccattcc aagcagccgc ttggcgcctt catcaaagtc cgcaagaacc
     2581 ccgtcggcgt cgaggaacag ccgtcgttcg gccattagaa gcgtgccggc tcgagcgtga
     2641 gatcgacggg cgtggctaat gtcttccagt cacgcgtgcg caagaggtca ttgctctcgc
     2701 gcgccttgcg cgttggtccg agcgaccagg tgatatgata gatggagccg tcaggtcggt
     2761 cgctcgtgcc atcgagttca accaccaggc attcgagact tcggccgtca tcggctcgac
     2821 ccacgatgcg tgctgatttt ggtcgcggtg gaagaggagt ctcaccgttc gtgccggtct
     2881 tcaaggttac gtgatcagca atgacgtttt cgtacttcgg cgggaatcgc tggaggagga
     2941 agtcgcgttc gccgcgtgcg agcttccagc cggtcacggt ccaaggtttc gccatgcaac
     3001 ctccaacttc agccggctca tcttgtttca ctcgcgacgc gtgggctccg ccgacgggct
     3061 tggtagtcag tgcgaagctg acgacagctt ctcaagcacg tcgcgcgcga aatcgatcaa
     3121 ggtgtcatcg cgggcgccca tgatgagaat gcgatcgccg ctccgcgcct cggacgcgag
     3181 ttttgttcca atgtcggcgc gaagggcaac gtgatcggcc tgcttgccgt gccgtcgaac
     3241 ctgttcggca agccagtcag agccatgaac cttttcgacc gttcctccct ggtagaccgg
     3301 atcagggaga tagagatgat catcgggcgc catgccgtcg gcgaggcttt gggcgagcgg
     3361 ctcgcccatc ttcgcaagcg gcccatagcc gtggggttga aacatgatca gcaatcggcc
     3421 gggctgcgcg cgcaaggtcg caaggcttgc cgcgatcttg tccggattgt gggcgaaatc
     3481 gtcgatgacg gtgacgcctg ctgattcgcc gacgatctcg aggcgccgtc tcagtcctgc
     3541 gaagcggccc aaggcgctca cagcatcttc gatgcgaact ccaaggagcc gagtggcagc
     3601 aatggcggct agcgcattgg acgcattgtg atgacccggg actccaaggc ggacttcgta
     3661 tctttgcccg tcggcctcta aagcgaaagt tagcccatag ccctcgagct tcaggtcctt
     3721 gcccatgaac gctgcgcctg gactgtcgaa gccatagccg actaccttat ctcgagccac
     3781 agcttcggcg agaatgcgcg tctcgggatc atcgaggtta agtaccgctt tcttcgcgct
     3841 attgagaaaa ccgccgaaga gttgacgcag ttcagccatc tccttgtgat cgagactgat
     3901 gttggtaagc acggcaacat ccgccttgta gagagctatt gatccgtcac tttcgtcaac
     3961 ttcgcttacg aacagctcag gatcacccac gagagcactc gcgaatggcg ccgatggtgt
     4021 cacgaaattc ttcatgacgg cgccattcat gaccgtcggc tggcgatggc acgcatgaag
     4081 gatccagccg atcattccgg tgacggtcga cttgccgctc gtgccgccaa ccgccacact
     4141 gcgttgcgca gcgttgagaa gccccgcaag gaattgcggt cgcgtcaaat ggacaaggcc
     4201 aagctcgttc gcgcggacaa catcgggcac gttcggctcg acggccgcgg acgtgacgag
     4261 tgtcattccc ggctgcagcc ccgatccgtc ctgcggatag agctggattc cgagagaacg
     4321 caggtaatcg aacttgtggg gcgtgcgccc ggcatcgagc gaacgatccg agccggcgac
     4381 ctttgctccg ctcgcgcgca cgattgaggc gagcggcaac atgccactgc caccaatgcc
     4441 gctgaagaat actggggaat ctgccatcgg gattcgccct attggctcga gcttcgaatg
     4501 gctagcgaca agcgccacct cccggccaac cgccagtgct actggccccc agcggaacgt
     4561 gcgcttagtt ggtcgaccgc tctgaaggat cgagctttac gctagtgagg aaagccagtc
     4621 caagtaggcc atcctcggcc cacttcacct ctgctggcac aagtattcca ccttcaaatc
     4681 ggacgtggac cctggcgcct ggcgcgaggt cggatgggtt ctcgcccatt gcgccgccct
     4741 ccgagatatt ttcgagagca aagctcgtcg gcgagccgtc gatgagcaat tggagcgttc
     4801 gcccctttgc cgggacgcgt cggtgctttc gctggtcggg cgatgtgaag ctggttggac
     4861 gggttactgg agagatcgtg tcatcatgtc gagcttcggc aagcggaatt gctgttccac
     4921 aaaatccgca ctcggcgctc actcgcccga tgtaccaatg cgaccggcca caaccgggac
     4981 agtggttcga tgaatttgcg cgatagacga tgtggtgccc acgctgtgcg aggccggcgg
     5041 caaaggacgg cgatgctcgc tcaaaaagga ggacctgaga cattaatgca ctccgcttat
     5101 gtgcaaaggc cctctcgagc cccgaaagac gagaagctag gctgcgatgc ttgcgaagtg
     5161 attaccgagc ggttctaagg agtgcatgcg gattgcaatc gtcgcgccga gctgcacgct
     5221 caacaaggat gctgcgcagg aagtcgaagg gatcgcgcga agccgcggcg attgcgaact
     5281 cattattcat ccccaatgtt ttctgtcgga aggccatttc gcaggctccg acgaggatcg
     5341 gcttcacgcg ttgcgcgaag tgatggcgga cgcttcggtc gacgcggtgt ggttcgcgcg
     5401 gggtggctat ggttcgaacc gaattgccga agccgcattg ggtgatctgc cgcaagcggg
     5461 aaggtccaag atctacatgg gctatagcga tgcggggttc ctcctcggcg gcttgcatcg
     5521 aaaaggactt gaagtcgcgt ggggtccgat gccccaggac gtgcttcgaa ccggtggtca
     5581 cgaggcgatc aaccgcgctc tcgactggct cgcatgcaag gatgcctcgg caatcgagcc
     5641 cgcaatcgac ggacccgcga tggctttcaa tctcaccgtg ctttcaaacc ttcttgggac
     5701 ttcgctcgag ccggatttca ccggcataga tcttctcgtc gaagatgtcg gcgagcatct
     5761 ttatcggatc gaccggtcga tgtttcacgt aagcgcgagc aagagcatcc aaaaggtgcg
     5821 gagacttcgc cttggaaggg tcagcgatat ccttccaaac gaccccaact ttggactcga
     5881 tgaagtggag attgtcgagc aatggtgcgc gcgctccggc atcctattcg gcggccgcgc
     5941 tgacattggt catgatgcgc agaaccacgt tgttccgttt ccaagtgcaa agcgctgatt
     6001 tttctctcgg caatagcatt gcaaagcgtc cacgtttgcg ctctatccag agacaggaac
     6061 aacaggaggg ccatgatggc acaaggcagt cgtaaagcag ggggcggact ggcccgcccg
     6121 gtcaccccgt cggcggatct cgcgcagatc tgcggcagtc agccgcttcc gcgcagccag
     6181 gtcgtgtcga aggtgtggga ccacattcgc aagaacaacc tgcagaaccc tcagaacaag
     6241 agggagattc ttgccgacga caagctgaag aaggtctttg gcggaaaaga caaggtcagc
     6301 atgttcgaaa tgaacaagca cctttcgaac caccttaagt aagtcgtccg agactttcgg
     6361 gaaaatggaa gggatccgcc ggggggcggg tcccttttcc tttgcccacc gccgagtcgg
     6421 ccgacgttat cagccgcgcc agagcccctc gagacgctcg ctcgtaatcg gatatcccag
     6481 atcgcctgga atcgtaatga attgctcgcc ctcacgttcc tcgacccacg ggctgatcgg
     6541 ttcaactgga tggctcaccg catcatttcg gatcgctgca aaggatgagt gctgagcgag
     6601 cctctcgaga ttgcgacggg tcggaaagat gagccgcgct tcgccgcgcg cttcccgttc
     6661 cagaacttcg ggagcactga gccaggcggc ctgcgcgcac tcaccctcga cgactgccgg
     6721 ttcccaatcg ccgggggcgg agggcgctac gaagaaaaaa gtatcgaaac gtcggaccgc
     6781 gtggaactta ggaacccagc gcgcaaaagg aattaacgcg ctgccgtcga gctccaaatg
     6841 cccttcttca aggacatgtg cgaagggctg gccagcaatc agtgctttct gcatcgcgcg
     6901 tgcttgcgac tttgacggca cgggtgaaat gcccaccgga atggccgttt cctcgagggt
     6961 ttcacgaatc gcggcaaccg ctcctggatg gagcgctgac gacgatccaa gctgacggtc
     7021 ttgctcgtca atgcggccgc cgggaaacac ccatgcgccg gcggcgaatg ccatgctccg
     7081 tgcgcgttcc accatcaata attcgggtgg ctcggccggc cgatcgcgca cgacgatcag
     7141 ggtggcggcg ggaatcgcct cgtcgctcac cgttgagggc cgcgcctaca tgccgctgac
     7201 gttttgttcg tcggcttcct tcggattggt tgtattgtcg gcaacggcat ttgcctcgtt
     7261 ggccgcttgc tgggcgttgt ttgctgccgc ctgcgcattt gcagcatcct gcgccgcctg
     7321 gttcgcaaga tcattgagct gatcagcctg cggctggttg atctcggcat tgtccaccgc
     7381 gtcaggattg ttcttgttgc acgcagcaag cgctagagcc gctgttccaa tggtcacaaa
     7441 agccagtctt ttcatcactt tcgatacccc atgatggccg ttcgctgttt gccataacag
     7501 cggcaaactt gagattcacg cggaaaatcc ctatctccgc caggccggtt cgccggctat
     7561 gtcggtagac tgtcaggtgg aataggcact tcggacccgg ggggcagtac cccggcgcct
     7621 ccaccatcgc cagcgctttt gatcgcgctg ccgttgatgg gggcgaaata ggatcgacga
     7681 gtgcaataaa ggcccggctg ccgatcggac tgagccaccg caacggctca ttcacacaag
     7741 tgccaacgat aacgaggcgc tcgctcttgc tgcgtaactg acgtcctaac ggactgaagt
     7801 tacaaggcta aagcgcggtt ggaccccacc gggcaacaga aggggattcc agcggttcgg
     7861 ggagcaccgg gcaacagaag ctccccactt ttctcctaat taggtcatcc tgaactcgtt
     7921 tcaggatcta tgttcgagac ccgacgccta cttccccgca atgcatgctg aaacaagttc
     7981 agcatgacga cttttcgcat caacggcagt gcggtacgct cctcgcaggg ggccctctca
     8041 tgcatcattg gaccaaacgt ctgttcacgc ttgcagcgcc gctgctgctc accggttgtc
     8101 tttggggacc gggcaagttc acgtcggacc tcacgctgcg caaggacggc agcttcgtcc
     8161 tcgattaccg cggcgagatc gtgctgcagc ttccagatgg cgaatataaa cccagccctt
     8221 ggaaagatac gatggcgcag tgctatcgaa gcgggcgcgt tacctggatt cctgccacgg
     8281 gagttcccgc cattacatta ccagatgacc cacccagacc ttgcacgccg tctgagatcg
     8341 cgaaggccaa atcgcaacat caacagcacg agacccaggc ggttgttgag gatcggaaga
     8401 agtccgaaga agcagcgaag gccttcggac ttcctggcct cgacgatgcc tccaaccgcg
     8461 ccttcgccgc aaagctcatg aaatatgccg gctggcgctc agtcgcctat cgcgggaacg
     8521 gcgtgttcga cgtcgactat catctcgagg gccgcgcgac gcaggacttc attttccccg
     8581 cgctgcccga caacgacctg ctgattccgt tcatcgccat ccggcggaga gccgacggct
     8641 cggtgctggt caatgccccg gccctgaccg gcggggctgg cccgatggcc gcgcgcgccg
     8701 gtgccggcgc catggagggc atgaagggcg gacccgtctc gcgcgcgcag gggcgcttta
     8761 ccgtgatcac cgacggcgag atcctgacca acaacagcga ggacggcccc gcgccgcatg
     8821 cgatcggcca tcagctccat tgggacgtcg gtccggcgtc gaacaagatc ccggaaaccc
     8881 tgatccgtct ttagccgtgc ccggctgctc gtcgaagcag cagttgcgca ttgcggtttc
     8941 ccggcccacc atcgctcatt cacttggggg atcaccgatg cgccgttccg ttctcgccgc
     9001 cattctcgcg acctgcgctt ccgccgcctt cgcggctccg acgccgaaag agcagctgct
     9061 cgtcccgccg gccaacgcca cgcatttcgt ggtcgtctcg accgcgggga agcatggcga
     9121 cgaatatatg tggaccttgc ccgacgggcg cctcgccttc cgcgaatcca ttctccttcg
     9181 cgggctgacc ttcgagacgg acgagacgat gcggctcggt gccgacggca tgcccacgga
     9241 cgtcgtcatt cgcggtgtca ctccgagcgg cgacgccgcc gagaccttcg caatggtcaa
     9301 tggaacggcc tcgtggaaaa gcccggtcga cgagggccac acggcttatt ccgcgccggc
     9361 ttactatctc gcgcagggcg gcccgttcct caccaccgcg cccgagatcg accggcttat
     9421 ggcggccggc aacgccgggc tgacgctcct cccgtccggg cgggcggact tcgacaaggt
     9481 gacctcgctc gaagtcgacg gcccccaagg caagaagacc gtcgacctca tcatggtgaa
     9541 gggcgtcggc cagtcgccgc agcctgtctg ggtcgagaac ggcaagttct tcgggcagct
     9601 ggttgggctc aacctcttgc cggcgggcta cgaaggcaat gcggagaaaa tgcaggcggc
     9661 gcaggacgcg gccatcgccg caatggcgcc tgcgatcgcg gcgaagttcc tcacgccgga
     9721 ggccaagcgg ccggtgctgt tcagcaacgt caagatgtac gacgccgatc gccagcgctt
     9781 cctcgagcat cgctacgtgc tgacaagcgg cggcaagatc gtgtcgatcg gcgcggcggc
     9841 tccggcgaaa ctacccgccg gaacgcgcaa gatcgacggc aagggcaaga cgctggtccc
     9901 cggcctgtgg gacagccaca tgcacgtcgg cgacgatttc cagacggtga gcgagctcgc
     9961 gctcggcgtc accaattgcc gcaatcccgg cggtccgatc gagctcgaag tctcgcagcg
    10021 cgagcgccgc aacgctggca agctgcttgc gccggaatgc tgggattccg tcatcgtcga
    10081 ccagaagggg ccgctcgtcg cgcaaggcag ccttgcggtc accagcctcg acgagacctt
    10141 ggccgcggtg cgcaagatcg ccgccaacca cctgaccgcg gtgaaattct acacgtcgat
    10201 gaagcccgag tggatcgcgc ccggagcgaa gctcgcgcac cagctcggcc tccacgtcca
    10261 cggccacatc cccgcgcaca tgcggacgat ggacgcgatc aacgccggct atgacgagat
    10321 cacgcacatc tatttcgcga cgatgcaggc gatgccgcag gaggtcgtcg acaaggccaa
    10381 caccacgatg cggatgctcg ggccgggcaa gtacttcaag gacgtcaatc tcgacgccga
    10441 gccgatgaag acggtgatcg cgacgatggc gaagaagcac atcgtcctcg atccgaccct
    10501 cgtggtggtc gagggcgtgc tcctcgcgga tgccgggact ccggcgccag cttatgcgcc
    10561 gtacatggga acggtgcccg cgacggtgga gcgcggcttc aagagcggcc acattcccta
    10621 tctgccgggc atgacccgtg ctgacgcgca ggcgagcgtc gaccacatgg gccaatatgt
    10681 cgccaagctc ttccacgccg gcgtgccgat cgtcgccggc accgacggct acggatacga
    10741 gctggtccgc gagttggagc tatacgtgaa gggcggcctg acccccgccg aggcgctcgc
    10801 cacggcgacg atcaatccag cgcgcaacgt gaaagccgcc aatcgcaccg gctcgatcgt
    10861 cgtgggcaag gaggcggacc tgctgctggt ggacggcgat cctgagaaga acatcgggga
    10921 cctgcgccac gtcgatcagg tgatgagcga cggctatctg atggacggca acgcgctgcg
    10981 cagcgccgcc gggtacagcg gtatgccgaa atagggccgg aactcctgcg aattgaaggt
    11041 gagacccgcc caggttcgcg tcgcgtgagg agggaggtcg cctcgatgaa cgggtctcgg
    11101 ccaaagtcat aagcgaggac cggcgggcga gaatattatc ggacgatagt cggctggcgc
    11161 cgcgttccga aatgggacgt cggcccgacc ggtaagtgag ctcaagcgcg tttccgaagc
    11221 tcgtcccgga tctcggtcag cagctcgacc tccgtcgggc cggccgcggc ggcatcgggc
    11281 tttttcatca gcttcgttgc ccagcgcacc atcagaaaga tgatgaaggc gaggatcagg
    11341 aagctaacga cctcggtcac gaactgtccc cagccgagca ctggcgcgcc ggccttcttg
    11401 agcgcggcat agtcggtcat cgagccgtgg tagccggccg gcaccggacc catgagcagg
    11461 aaatggcttg agaaatcgag cccgccgaag atcttgccga cgatcggcat gatgatgtcg
    11521 tcggtgagac tggtgacgat cttggcgaac gccgcgccaa tgatcacggc caccgcgagg
    11581 tcgagcacgt tgcccttggc gatgaatgcc ctgaagtcct tcagcatcgc agcccccatt
    11641 tctaatgtca cgtggccgac actaatgcag attgctcagg gaaatgaaag tgaacgcgga
    11701 tgtgtgttgc tgtcatatga cagcatcttg aaccggaaca accatgcatc tacttatgcg
    11761 ccccacgcga cgtatcaggg gaaagcaaat gaccgcactt cgccgtttcg gacttctcgc
    11821 gccggccatg gcgattggcc tgtctgcctg cggcatcaat gccgttccga ccgaggagga
    11881 gaaggtcaac gccgcatggg gcaatctgca ggcggattat cagcgccgcg cggacttgat
    11941 cccgaacctc gtcaacaccg tgaagggcta tgcgcagcag gagaagaccg tgctgacgca
    12001 ggtgacggag gcgcgggcca aggcgaccag catccagctc aatgccaacg acctgagcga
    12061 tccggccaag gtccaggcgt tccagaatgc gcagaaccag ctcggcggat cgctcgggcg
    12121 gctgctcgcg acgttcgagg cttatccgga tttgaagtcc aaccagaact tcctcgcgct
    12181 ccaggaccag ctcgagggca cggagaaccg gatcaacgca tcgcgccgcg actacaactc
    12241 ggcagtgcag gaatataaca cgacgatccg caccttcccc gacgcgatcg gcgccaagat
    12301 cttctatggg gccaagccga aggttccgtt cgaagccgcc gccgccgcgc agcaggcgcc
    12361 gacggtcaat ttcggcaacg gcagctgaca atgctcgtca ttcccgcgaa agctggaacc
    12421 cagtccaaga agatctgggc ccccgctttc gcgggggtga cgatctgggc tttggttctg
    12481 gcgttcttcg cgctggcggc cccggcgacc gcacagacgt ttcccgcgaa caacgggtcg
    12541 ccggtcgtcg accaggccgg gatcctgaca ccggagcagg tggccgacct gaccagcaag
    12601 gctcaggcgc tctacgccca atcggggcgg gcgttcgcgg ttgccaccgt caatagcctc
    12661 gaaggctacc cgattgagga ctatgcgtat cgcctcggcc gcgcttgggg attgggccag
    12721 aagggcaagg acgacggcgt cctcctgctg gttgcgccca acgagcgcaa ggtgtggatc
    12781 gccacgggct acggcgccgg cgcgttcatg accgatgcga tgtcggggat catcatccgc
    12841 gaggacatcc tgccgcactt caagcagaag ccgcccgact atggcggcgg catcgaggcc
    12901 ggcgcggatg cgatcatc
//
LOCUS       DASRBJ010000150         5538 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_474625,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000150 DASRBJ010000000
VERSION     DASRBJ010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5538
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474625"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            74..478
                     /locus_tag="VE968_04315"
     CDS             74..478
                     /locus_tag="VE968_04315"
                     /inference="COORDINATES: protein motif:HMM:NF021438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HZU51080.1"
                     /translation="MTKRFVPPMLAAALIVSPAAAQTGNFEGHWANPKHSTIVNVSRC
                     DGDYFCAVVLKASAKAQANARKGGTMHFIGTEILRVRPAGDGTFKGTAFDPETNMHVS
                     ATVKVLGPDEMEIRGCALLGLVCEAQRWTKVS"
     gene            complement(524..2035)
                     /gene="hutH"
                     /locus_tag="VE968_04320"
     CDS             complement(524..2035)
                     /gene="hutH"
                     /locus_tag="VE968_04320"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004397 - histidine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HZU51081.1"
                     /translation="MRLDPDNVALDDLRRIWAGAEVSLDDTAMARIARSASAVERIVA
                     GGETVYGVNTGFGILANTRIPNERLAELQANLILSHSAGLGDPFPRHVTRLMIVLKLL
                     GLGRGYSGVRLNVIDALQRLLERDAMPLIPSQGSVGASGDLAPLAHLIAALMGFGRID
                     IQGEVVMAAAGLKRLGLDPLELGPKEGLALINGTQASTALALDALFQAERIFGAAIAA
                     GALSVDALKGSVKPFDPRISALRGQPGQIRVAAEIAALLERSEIVTSHVKCSRVQDPY
                     SFRCQPQVMGASLDLLQNAARTLTIEASAVTDNPIVFADEDSAISGGNFHAQPVAFAA
                     DTISMALCEVASISERRVSVLVDPKMSGLPAFLTQDSGVNSGLMIPQVTAAALVSENK
                     ALAYPASVDSIPTSAGQEDHVSMAPIAARKAAQIARNAAGVVAVELMAAAEGIDYHLP
                     LKTSPRLQAIHASVRACSPHFTADRYWADEISELQRAVLAGEIGSLRFLTYAE"
     gene            complement(2032..3690)
                     /gene="hutU"
                     /locus_tag="VE968_04325"
     CDS             complement(2032..3690)
                     /gene="hutU"
                     /locus_tag="VE968_04325"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008601062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016153 - urocanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HZU51082.1"
                     /translation="MDRRDNSRRIRARRGNDIKAKQWTTEAAVRMLMNNLDDEVAEDP
                     QNLVVYGGIGRAARNWECFDRIVEVLERLEETETLLVQSGKPVGVFTTHKDAPRVLIA
                     NSNLVPKWANWEVFNELDRKGLMMYGQMTAGSWIYIGTQGIVQGTYETFVEMGRQHYG
                     GNLKGRWILTAGLGGMGGAQPLAAVMAGAHCVAIECQESRIQKRLETRYLDRRAETID
                     EALKIISEAREPTSVGLLGNAAEILPEMLKRGIVPDALTDQTSAHDPANGYCPAGWSV
                     SKWQQMLERDPDAVASAARASIAQHVEAMLAFRAQGVPTFDYGNNIRQEAKDSGVVHA
                     FDFPGFVPAYVRPLFCRGVGPFRWAALSGDPDDIYRTDERVKELIPNDPHLHRWLDMA
                     RQRIAFQGLPARICWVGLGQRHRLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNR
                     ETESMNDGSDVVSDWPLLNALLNTASGATWVSLHHGGGVGMGYSQHSGMVIVADGTDD
                     AARRLERVLWNDPATGVMRHADAGYEAAISCARDQGLDLPMVAN"
     gene            complement(3703..4311)
                     /locus_tag="VE968_04330"
     CDS             complement(3703..4311)
                     /locus_tag="VE968_04330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019051967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Pr6Pr family membrane protein"
                     /protein_id="HZU51083.1"
                     /translation="MRNAAAASIAIVCWAGLSIQFAAALSHEHHALATLWAPSRFFTI
                     TTNLLVALAMTFVAIGRRLSPLLLGGLTVWLLLVGIVYGLLLRGLHPLNGPAATANIL
                     LHDVAPLLMLCWWLLFAPRSRLKWDAPLLWALYPIIYIGYVLARGRVDGRYPYPFMDV
                     PKIGWVQTSMNLGGIAFGFLVFGFVVVWIDRWRPLGSKRANG"
     gene            complement(4304..5488)
                     /gene="hutI"
                     /locus_tag="VE968_04335"
     CDS             complement(4304..5488)
                     /gene="hutI"
                     /locus_tag="VE968_04335"
                     /EC_number="3.5.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010339115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050480 - imidazolonepropionase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazolonepropionase"
                     /protein_id="HZU51084.1"
                     /translation="MIATCDGASAKDLGIIDNGAIGIADGKIVRVGKRTELAGYRARE
                     VVALGGAWVTPGLIDCHTHLVFGGNRADEHALLRAGASYEEIARAGGGIASTVKRTAA
                     SSDRELVDQSRRRLHALMLGGCTTIEIKSGYGLDVEGELRLLEVARELGRIEPVRIAP
                     TLLALHALPQAQRDRRAHYVSEIVDKLIPRAAKQGIATSVDAFCDTIAFTPAEVERVF
                     KAAADCGLAVRLHAEQLSNQCGAALAAKYHALSADHLEHLDDTGAKAMAAAGTIAVLL
                     PGAYYALQEERKPPLALLREHQVRIAVATDCNPGTSPLLSPTLAMNMACTLFGLTPEE
                     AITGMTINAARALGLQRSIGSIAPGKQADLCVWQVESLAELVYWIGLPGPERRIFGGI
                     DA"
BASE COUNT         1128 a         1713 c         1655 g         1042 t
ORIGIN      
        1 tgcgcgttcc tcggacttgt ttgcaaggag caacgatgga cccgcaccgg ctaattgctg
       61 caggacttca cccatgacga agcgctttgt ccccccaatg cttgccgcgg cactgatcgt
      121 gtcgcccgcc gctgcgcaaa cgggcaactt cgaaggccat tgggcaaacc ccaagcattc
      181 gacaattgtg aacgtcagcc gatgcgacgg tgactatttt tgcgccgtcg ttctcaaggc
      241 atcggctaag gcgcaggcca acgcccgaaa gggcgggacc atgcatttca tcgggaccga
      301 gattcttcgg gtgcgccctg ccggcgatgg gacgttcaag ggaacggcat tcgatcccga
      361 aaccaacatg cacgtgtcag cgactgtgaa agtgctcggc cccgacgaaa tggagataag
      421 ggggtgcgct ctccttggtc tcgtgtgcga ggcacagcgc tggacaaagg tcagctagaa
      481 cgggtccttt ccagttcatc cgcaccaatg cgcagcaaat tcgctactcg gcgtaagtca
      541 agaatcgcaa tgagccgatt tcgccagcaa gcaccgctcg ctggagttcg ctgatctcgt
      601 ccgcccagta gcgatcggca gtgaagtgcg gcgagcatgc acgcaccgaa gcgtggattg
      661 cctgcagcct cggggaagtt ttcagtggaa gatggtagtc gatgccttca gcggctgcca
      721 tcagctcgac cgcgacgaca ccggcagcgt tacgcgcaat ctgcgccgcc tttcgcgctg
      781 ctatcggcgc catcgacacg tggtcttcct gcccagccga cgtcggtatc gaatccacac
      841 tcgccggata ggcaagtgct ttgttttcgc tcaccagggc agccgcagtt acctgcggta
      901 tcatcagtcc cgaatttacg cccgaatcct gcgtgaggaa tgcgggaagg ccactcatct
      961 ttggatcaac cagcacgcta acgcgcctct cggatatcga ggcaacctcg cacagtgcca
     1021 ttgagatggt gtccgcagca aaggcgaccg gctgcgcatg gaaattgcca ccggaaatgg
     1081 cgctgtcctc gtcagcaaag acgatcgggt tgtcggtaac cgccgacgcc tcgatggtca
     1141 gcgtccgcgc cgcattttgt aagaggtcga gcgaggcgcc catgacctgg ggctggcaac
     1201 ggaagctgta tgggtcctgc actcggctgc atttgacatg gctcgttaca atctcgcttc
     1261 tctctagaag cgccgctatc tccgcggcga cgcggatttg tcccggttgt ccgcgcaagg
     1321 cggagatgcg cggatcgaaa ggcttcaccg agcccttgag agcgtcgacc gaaagtgccc
     1381 cggccgctat tgccgctcca aatatgcgtt cagcctggaa aagcgcgtcg agcgccagag
     1441 cggtgctcgc ctgcgtccca ttaatgagtg cgaggccttc tttgggccca agttcgagcg
     1501 ggtccaggcc aagacgcttg agtccggccg ccgccatgac cacttcacct tgaatgtcga
     1561 tccggccgaa gcccatcagt gccgcgatca agtgggcaag cggcgcaaga tcgccgcttg
     1621 ccccgacgct gccctgtgac ggaatcaaag gcattgcatc acgttcgaga agccgctgaa
     1681 gcgcgtcgat cacattcagc cgaacaccag aatagccacg tccaagccca agcagcttca
     1741 gcacgatcat cagtcgcgtg acgtggcgtg gaaaagggtc gcccagtcct gcgctatgcg
     1801 aaaggatcag attggcttgc agctcggcca agcgctcatt gggaatgcgg gtgttagcga
     1861 gaatgccgaa gccggtgttg acgccgtaga cggtctcgcc accggcaacg atacgttcga
     1921 ccgcgctggc ggatcgggca atacgcgcca ttgcggtgtc gtcgaggctg acctcggcac
     1981 cggcccagat ccgacgcaag tcgtctaagg cgacattgtc cgggtcgagc ctcaatttgc
     2041 aaccatcggc aagtcgagtc cctggtcgcg cgcgcaggaa attgccgcct cataacccgc
     2101 atccgcatga cgcatcacgc ccgttgcggg atcgttccac aagacccgct cgaggcgccg
     2161 cgcagcatcg tccgttccgt cagcgacgat gaccattccc gaatgctgcg aatagcccat
     2221 cccgacgcct ccaccatggt gcagcgagac ccaggtcgcg ccggacgcag tgttgagcag
     2281 cgcgttcagt agcggccagt cgcttacgac gtcacttccg tcattcatgc tttccgtctc
     2341 gcggtttggt gaagcgacgc ttccgctatc gagatgatcg cggccaataa cgatgggagc
     2401 cgagacttcc ccgctgcgaa ccatttcgtt gaaggcgagg ccaagacggt gccgctggcc
     2461 aagccctacc cagcagattc gcgccggcag gccctgaaaa gcaattcttt gacgtgccat
     2521 gtcgagccag cggtggaggt gcgggtcatt cggaatgagc tccttcacgc gctcatcggt
     2581 gcggtagatg tcatcaggat ctcctgagag cgccgcccag cgaaatggac cgaccccgcg
     2641 gcagaacagc ggccgcacat aggccggaac gaagccggga aaatcgaagg cgtggacaac
     2701 cccggaatcc ttcgcttcct ggcgaatatt gttgccgtag tcgaacgtcg gaacaccctg
     2761 cgcgcgaaag gcaagcatcg cctcgacatg ctgcgcgatc gaagctcgcg cggcgcttgc
     2821 aaccgcgtcc gggtcgcgct caagcatctg ctgccatttg cttacgctcc agccagcggg
     2881 gcaatatcca ttcgcgggat cgtgggcgga agtctggtcg gtgagcgcat caggaacgat
     2941 gccgcgcttt agcatctcag ggaggatctc cgcagcatta ccgagtaggc caacgctggt
     3001 cggctccctc gcctcactga tgattttcag cgcctcgtcg atggtctcgg ctcggcgatc
     3061 aaggtagcgc gtttcaagcc gcttctggat gcgactctct tggcactcga tcgcgacgca
     3121 atgagcgccg gccatgacgg cggcaagtgg ctgtgcgcca cccattccgc caaggcctgc
     3181 agtcaaaatc cagcgtccct tgaggtttcc gccataatgc tgacggccca tttcgacgaa
     3241 ggtctcgtac gtgccttgaa cgatcccttg cgtgccgatg tatatccagc tgccagcggt
     3301 catctggcca tacatcatga gccccttgcg atcgagctcg ttgaacacct cccaatttgc
     3361 ccactttgga acgaggttcg agtttgcaat caggacgcgc ggcgcgtcct tgtgggtggt
     3421 gaacacgccg accggcttcc ccgactgcac aagcagggtc tcggtctctt caagccgctc
     3481 gagaacttcg acgatgcgat cgaagcattc ccagttgcgt gccgcacggc caataccgcc
     3541 atagaccacg aggttctgag gatcctccgc cacttcatcg tcgagattgt tcatcaacat
     3601 tcgaaccgcc gcttcggtgg tccactgctt cgctttgatg tcattgcccc ggcgcgcgcg
     3661 aatgcgtcgg ctgttgtcgc gtctgtccat gtgcaacttg ccttagccgt tcgcgcgctt
     3721 cgacccaagc gggcgccagc gatcgatcca gacgacaacg aagccgaaga cgaggaaccc
     3781 aaatgcgatt cctccaaggt tcattgatgt ctggacccag ccgatcttcg gcacgtccat
     3841 gaacgggtag ggatagcgtc cgtccaccct tccccgcgca agtacgtagc caatatagat
     3901 gataggatag agggcccaga gcagcggcgc gtcccacttc agccgagaac gcggcgcgaa
     3961 cagcagccac cagcacagca tcagcagcgg cgcgacgtca tggaggagaa tgttggcggt
     4021 ggccgcgggc ccgttgagcg gatgtagacc gcgcaaaagc aggccgtaaa caataccgac
     4081 aagcagcaac cagacggtta gcccgccaag caagaggggc gacaaacgtc ggccgatcgc
     4141 aacaaacgtc attgctagcg cgacgagcaa gttggtggtg atggtaaaaa atcgagacgg
     4201 cgcccatagc gtcgcgagcg cgtgatgttc gtggctcaat gcggcggcaa actggattga
     4261 aagccccgcc cagcagacga ttgcaatcga ggccgcggct gcgttacgca tcaattcccc
     4321 caaagatccg ccgttcgggc ccagggagcc caatccagta gacaagctcg gcgaggctct
     4381 cgacctgcca cacgcaaaga tcggcctgtt tgcccggcgc gatcgagcca atcgaacgct
     4441 gaagtccgag tgcgcgggca gcgttgatcg tcattccggt aattgcttcc tcgggcgtaa
     4501 gaccaaacaa ggtgcaagcc atgttcattg caagcgtcgg cgaaagcagt ggtgatgtgc
     4561 cggggttgca atccgttgcg actgcaattc gcacctggtg ttctcgtagg agcgcgagcg
     4621 gcggcttacg ctcctcctgc agcgcataat aagcgcctgg cagcaagacg gcgatcgtgc
     4681 cggctgcggc catggccttt gcacccgtgt cgtcgaggtg ttcaagatga tcggccgaca
     4741 gcgcgtggta tttggcggca agggctgctc cgcactggtt ggaaagctgt tcggcatgaa
     4801 gacgaacagc aagaccgcag tcagccgctg ctttgaagac gcgctcgacc tccgccggcg
     4861 tgaacgcgat ggtgtcgcaa aatgcgtcga cactggtagc gattccctgt ttcgcagcgc
     4921 gcggtatcag cttgtcgaca atctcgctga cgtaatgcgc tcgacggtcg cgctgagctt
     4981 gtggcagtgc atgaagagca aggagcgtcg gcgcaattcg aaccggttcg atgcggccaa
     5041 gttcgcgtgc gacttcgagc aagcgaagct cgccttcgac atcgaggcca tagccggact
     5101 tgatctcgat cgtggtacag ccacccaaca taagcgcatg gaggcgccgg cggctttgat
     5161 cgacaagctc acggtcgctc gaggctgccg tgcgcttgac tgtcgaagca atgccgccac
     5221 cggcccgggc gatctcttca tagcttgccc ccgcccgaag aagggcatgt tcgtcggcgc
     5281 ggttgccgcc aaagacgaga tgcgtgtggc agtcgatgag cccaggagtc acccacgctc
     5341 cgccaagcgc aacaacttcc ctggcgcgat agccggcgag ttccgtgcgc tttccgacgc
     5401 gaacgatctt gccgtcggca attccgattg cgccattgtc gatgatacca agatccttgg
     5461 ccgacgcgcc atcgcatgtc gcgatcatgc agtcgacgag caatcggtcc cacatgagcg
     5521 tcgccttagg cgagcact
//
LOCUS       DASRBJ010000151         5376 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_730042,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000151 DASRBJ010000000
VERSION     DASRBJ010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5376
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_730042"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(51..2681)
                     /gene="pepN"
                     /locus_tag="VE968_04340"
     CDS             complement(51..2681)
                     /gene="pepN"
                     /locus_tag="VE968_04340"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HZU51085.1"
                     /translation="MADVRTTTLHDAETAPEAPPSPTHLTIRREDYRPPDWLVPEISL
                     DFDLGTETTRVRARLLVERNGMHERPLCLDGDDLELVSATLDGKSANARIDGSRLVID
                     IANDRATVETEVEIHPSANTKLMGLYASAGMLCTQCEAEGFRRITFFPDRPDVLSKYR
                     VRMEGSAAEFPILLSNGNRVAHGEAANGRHWAEWHDPFPKPCYLFALVAGDLKANRSS
                     FTTMSGRNVDLFIWVREADLPKTQHAMESLKQAMAWDEQVYGREYDLGQFNIVAVSDF
                     NMGAMENKSLNIFNSAYVLADQETATDGDFDNIARVVAHEYFHNWSGDRVTCRDWFQL
                     SLKEGFTVFRDQSFSADVGSASVKRIEDVRVLRAAQFPEDQGPLAHPVRPDSYIEISN
                     FYTATVYNKGAELIRMFHTVLGPEKFRAGTDLYFDRHDGEAATCDDFVKALEDASGVD
                     LSPFKIWYSQAGTPKVSARLDYDAQNKRAILHLEQQEDPTPGQPVKQPMPIPLKTALI
                     GATSGAQISAEKLIVLDEQSKTITFEKVDEAPLLSLNRNFSAPVIVTVDRGPDELERL
                     AQADTDPFARYEAIQELMMSALVAGANGKPANKEAVVRAIAATLKSNMLDPAFKGEAI
                     LLPSESLIADRMEIVDPDAIHDAREELRRNIGLALFDDLVAAHAVRGAAGDDLSSQAK
                     GIRRLRTVALGLIAGADEAKAATLAKAQFDRADNMTDRQGALAVLASLDTPEREAALE
                     QFYSRFKDDALVLDKWFALQAAAQRRDTIDQVLKLAHHPDFSMANPNRLRSLASVFSA
                     NHWAFHSPDGRGYSFLADMIIAADKLNPQIAARLVPALGRWRRYEPARAQLMRQALER
                     IVATPGLSKDVFEQASKSLA"
     gene            2837..3097
                     /locus_tag="VE968_04345"
     CDS             2837..3097
                     /locus_tag="VE968_04345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2171 domain-containing protein"
                     /protein_id="HZU51086.1"
                     /translation="MSGFEDVREHMEVIGADGVHLGTVDRIEGDRIKLIRADSGIGHE
                     QHHHFVPRGLVAEVEGDKVRLTARADVVADLFEQEESGQPLG"
     gene            3179..3610
                     /locus_tag="VE968_04350"
     CDS             3179..3610
                     /locus_tag="VE968_04350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51087.1"
                     /translation="MKRLCILVSSSILLASCGRSENQPTNNGAAANAAQAEKPHAYCF
                     FKDEEMKGWTAKRDQHGDISVDGEAHVADPRYKASFSKVAVGPKKAIFELTISQNDLG
                     YAMRDNWWHVGLIAPNSASLTEATVQCGDKLVADLKLPPKG"
     gene            3703..4029
                     /locus_tag="VE968_04355"
     CDS             3703..4029
                     /locus_tag="VE968_04355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51088.1"
                     /translation="MKEKQRVASPAPGQPWTKPEDYLEALARKRTFRRARRERLRTEP
                     ERPRLLLSTIPFFALIGLLAVLAIAIMIVAFPGSQPLQRAKPAAAKEQGVAQRGWFEE
                     AQKEMH"
     gene            4075..4704
                     /locus_tag="VE968_04360"
     CDS             4075..4704
                     /locus_tag="VE968_04360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HZU51089.1"
                     /translation="MVATHIAPPVSDALVILDFFGIAVFAVSGALLAAEKKQTLVTFI
                     FFAVSTGVGGGTLRDLLIGAPVFWVHTNGTLLICIGAAVAVWFLSSKRISEKALAWFD
                     AAGLAAYATYGSAKAIAYGVAPVPAFAMGVLTACVGGVVRDVIAGEPSIIMRPELYVT
                     AAALASGLFVALTFMGLPVSVAAIVAILAAFAVRGGAIARGWSLPAYKD"
     gene            4738..>5376
                     /locus_tag="VE968_04365"
     CDS             4738..>5376
                     /locus_tag="VE968_04365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013934669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HZU51090.1"
                     /translation="MNANFYRIERLPPYVFAEVNAMKAAARARGEDIIDLGMGNPDGA
                     PPQHVIDKLCEVARKPTAHGYSASRGIAGLRKAQAAYYERRFGVTLDPDREVIVTLGS
                     KEGLANLAEAITAPGDVVLAPNPSYPIHTFGFIIAGAAIRSIPAAPGEEFFTRLTNAM
                     RYTVPRPKVLVVGYPSNPTAYVADLSFYRRLVDFAREHQLIVISDLAYAEIYF"
BASE COUNT          990 a         1614 c         1683 g         1089 t
ORIGIN      
        1 gaacgaggtc gcgctcgaag tggcgcgctg gcttgcaggc tagccggctg tcacgccagc
       61 gacttgctcg cctgctcaaa aacgtccttt gacaggccgg gagtggcgac gatcctttca
      121 agtgcctgcc gcatcaattg cgcgcgtgcc ggttcataac gcctccatcg gccgagcgcg
      181 ggaaccagcc gtgctgcaat ttggggattg agcttgtccg cggcgatgat catgtcggcg
      241 aggaaggaat agccgcgccc gtccggcgaa tgaaacgccc agtggttcgc gctgaacacg
      301 ctcgcaagcg accgaaggcg gttggggttt gccatcgaga aatccgggtg gtgcgcaagc
      361 ttcaggacct ggtcgatggt atcgcgacgt tgtgccgcgg cctgcagcgc aaaccatttg
      421 tcgaggacga gcgcgtcatc cttgaagcgc gaatagaatt gctcgagcgc tgcttcgcgc
      481 tcgggcgtat cgagcgacgc gagcacggca agtgctccct ggcgatcggt catgttgtcc
      541 gcgcggtcga attgcgcttt cgcaagtgtt gcggctttcg cctcgtcggc gccggcgatc
      601 aggccgagag caacggtgcg gagccggcga atgcccttgg cttgcgatga aaggtcgtcg
      661 ccggcagcac cccgaacagc gtgcgctgcg acgaggtcat cgaagagggc aaggccgata
      721 ttccttcgaa gctcttcacg cgcgtcgtgg atggcatcgg gatcgacaat ctccatccgg
      781 tcggcaatca ggctttcgct cgggagcagg atcgcttcgc ccttgaacgc tggatcgagc
      841 atgttggact tgagcgtcgc cgcaattgcg cgaacgaccg cctccttgtt ggcaggcttt
      901 ccgttggcgc ccgcgacaag cgcggacatc atcagctcct ggatggcttc gtagcgagcg
      961 aacgggtctg tgtcggcctg cgcgaggcgc tcgagctcat ctggtccgcg atcgacggtg
     1021 acgatcacgg gcgccgagaa gttgcggttg agcgagagca gcggcgcttc gtcaaccttt
     1081 tcgaacgtga tcgtctttga ttgctcatca agcacgatga gcttttcagc cgatatttgc
     1141 gcgccgcttg tcgctccgat gagtgcggtc tttagcggaa tgggcatcgg ctgtttgacg
     1201 ggctgcccgg gagtgggatc ctcctgctgc tcgagatgaa ggatcgcacg cttgttctgc
     1261 gcatcgtagt cgagacgggc gctgaccttg ggcgttccgg cctggctgta ccagatcttg
     1321 aacgggctaa gatccactcc gctcgcgtct tcaagcgcct tcacaaagtc atcgcacgtc
     1381 gccgcctcgc catcgtggcg atcgaaatag aggtcggtgc cagcgcggaa tttttcgggc
     1441 ccaagaacgg tatggaacat ccgaatgagc tccgcgccct tgttgtagac agtcgccgtg
     1501 taaaagttgg agatctcgat gtagctgtca gggcgaaccg ggtgcgcaag cggcccctgg
     1561 tcttcgggaa attgcgctgc gcgcagaacc cgcacgtctt cgatgcgctt aacggaagcg
     1621 cttccgacat cggccgagaa gctctggtca cgaaaaacgg tgaagccttc cttgaggctg
     1681 agctggaacc agtcgcggca ggtgacgcga tcaccggacc aattgtggaa atattcgtgc
     1741 gcgacgacgc gcgcgatgtt gtcgaaatca ccgtcggtcg cggtctcctg atcggcgagc
     1801 acataggcgg agttgaagat attgagcgac ttgttctcca ttgcgcccat gttgaagtcg
     1861 ctgacggcaa cgatgttgaa ctgtccaagg tcatactcgc ggccgtagac ctgctcatcc
     1921 cacgccatcg cctgcttcag gctctccatc gcatgctgtg tcttgggaag atcggcctct
     1981 cttacccaga tgaagaggtc gacgttgcga ccgctcatcg tcgtaaagct gcttcgattg
     2041 gctttgagat caccggcgac cagcgcgaac aggtagcatg gtttggggaa cggatcgtgc
     2101 cactcggccc agtggcggcc gttcgccgct tcgccatgag cgacgcgatt gccattcgag
     2161 agcaggatcg ggaattcagc agcgctgccc tccatgcgca cgcgatattt tgagagcacg
     2221 tcgggccgat cggggaagaa agtgatccgc cgaaagcctt ccgcttcgca ctgcgtgcac
     2281 agcattcctg ccgacgcgta aaggcccatg agcttggtgt tcgcggacgg atgaatttcg
     2341 acttcggttt cgaccgtcgc tcgatcgttc gcgatgtcga tcacgagcct ggagccatcg
     2401 atgcgcgcgt tcgccgactt cccgtccaac gttgccgaga ccagctcgag atcgtcgcca
     2461 tcgaggcaca aggggcgctc gtgcatgcca ttgcgctcga cgagcaggcg cgcccgcacc
     2521 ctcgttgtct cggtaccgag atcaaaatcg aggctgattt ccgggacgag ccagtctggc
     2581 ggccgataat cctcgcgccg aatggtgaga tgcgttgggg atggcggtgc ttcaggtgcc
     2641 gtctcggcgt cgtggagcgt ggttgtgcgg acatcggcca tgagctcgga cttaagcgcg
     2701 agcgcgggac cggacaaccc gcggcaagat gacttgccgg cgaaacaggt ctagcctcga
     2761 gcgcgcgcga caatccggtt gaacccaccg cgcgagcgaa gcgttaggcc gacacccaag
     2821 tccaggagaa ggttttatga gcggcttcga ggatgtccgt gaacatatgg aagtaattgg
     2881 cgccgacggt gtccacctcg gcacggtcga tcggatcgag ggcgaccgca ttaagctgat
     2941 ccgcgcggat agtggcattg gccacgaaca gcaccaccac ttcgtgccgc gcggactagt
     3001 cgcggaagtc gaaggcgaca aggtgcggct gacagcccgc gctgacgtgg ttgcggacct
     3061 gtttgaacag gaggagagcg ggcagccgct cggctgagtt ttcagctata gatccgaacc
     3121 ggtcttgacc gcgctttcgc attctcgttc aagtcgcatc gcgttgaagg gggatgcgat
     3181 gaagcgcttg tgcattcttg tctcgagttc gattcttctt gcaagctgcg gtcggtccga
     3241 aaaccagccg acgaacaatg gagctgcggc caatgcggcg caggcggaaa agccgcatgc
     3301 ctattgcttc ttcaaggacg aggagatgaa gggctggacc gccaagcgcg accagcacgg
     3361 cgacatcagc gtcgacgggg aggcgcacgt cgccgacccg cgctacaagg cttccttcag
     3421 caaggtcgcc gttggcccca aaaaagcaat cttcgagctc acgatctcgc aaaatgatct
     3481 tggctacgca atgcgcgaca attggtggca tgttgggctg attgctccca acagcgcctc
     3541 gctgacggag gccacggtgc agtgcggtga caagctcgtc gcggatctca agctgccgcc
     3601 aaagggctag tcgacgcagc acacgaccgg ctcggcgaaa cacctcgatc gaagatctcg
     3661 aggttattgc attcgtccgg ggtgaggagc acctagcgcg ccgtgaaaga gaagcagcgc
     3721 gtcgcgagtc ctgcgccagg ccagccttgg acgaagcctg aagattatct cgaggcactg
     3781 gcgcgaaagc gaaccttcag gcgggctcga cgggagcgcc ttagaaccga gcccgaacga
     3841 ccaagattgc tgttgtcgac gatccctttt ttcgcgctga ttgggctgct tgccgtcctt
     3901 gcgatcgcga tcatgatcgt cgcctttccc ggttcgcaac cgcttcagcg cgcgaaaccc
     3961 gccgccgcca aggagcaagg cgttgcgcag cgaggctggt tcgaggaagc ccagaaggaa
     4021 atgcactagg gcggcgggtt gcgcgcccgc aggtcagccc gcattagcgt ttcgatggtg
     4081 gccactcata ttgctccgcc agtgtccgat gcgctcgtga tcctcgactt cttcgggatt
     4141 gcggtgttcg ccgtttccgg agcgctcctt gctgccgaga agaagcagac gctggtgacc
     4201 ttcatcttct tcgccgtttc aaccggcgtc ggaggcggga cattgcggga ccttctgatc
     4261 ggcgctcccg tcttctgggt ccacaccaac ggaacgcttc tcatctgcat cggcgctgcc
     4321 gtcgcggtat ggttcctcag cagcaagcga atttcggaaa aggcgcttgc ctggttcgac
     4381 gcggcagggc ttgccgccta cgcgacctac ggatcagcaa aggcaattgc ctatggtgtt
     4441 gcgccagttc ctgcgttcgc gatgggcgtg cttaccgcct gtgtcggcgg cgttgttcgc
     4501 gacgtgattg cgggtgagcc gtcgatcatc atgcggcccg agctttacgt cacggcggct
     4561 gcacttgcct cggggctctt cgtcgctttg acctttatgg gtctccccgt ctccgttgcg
     4621 gcgattgtcg cgatccttgc cgccttcgcc gttcgcggcg gcgcgattgc gagaggctgg
     4681 tccttgccag cctacaaaga ttgatccgct ttgccgcaga gcgcaggacg tcacgccatg
     4741 aacgcgaatt tctaccgcat cgagcgcctc ccgccctacg tgttcgcgga agtcaacgcg
     4801 atgaaagccg ctgctcgcgc ccgaggcgaa gacattatcg accttggcat gggcaaccct
     4861 gacggagcgc cgccgcaaca cgtcatcgac aaattgtgcg aagtcgcgcg caagccgacg
     4921 gcccacggct attcagcaag ccgcgggatc gccggtttgc gcaaagcgca ggcggcttat
     4981 tacgagcgcc gcttcggggt gacgctcgac cctgaccgcg aggtcatcgt taccttggga
     5041 tcaaaggaag gtcttgcaaa cctcgccgaa gcgatcacgg ctcctggcga cgttgttctc
     5101 gcacccaacc cttcctatcc gatccacacg tttgggttca tcatcgctgg tgccgcaatc
     5161 cgctcaatcc ccgcggcgcc tggcgaagag ttcttcaccc gcctcacgaa cgcgatgcgc
     5221 tacactgttc cacggcccaa agtgctggtc gtgggttatc cgtcgaaccc cacagcctat
     5281 gtcgccgacc tttccttcta ccgccggctc gtcgattttg cgcgcgagca tcagctgatc
     5341 gtcatctccg atcttgccta tgccgagatc tatttc
//
LOCUS       DASRBJ010000152         3349 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_222454,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000152 DASRBJ010000000
VERSION     DASRBJ010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3349
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222454"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..365)
                     /locus_tag="VE968_04370"
     CDS             complement(<1..365)
                     /locus_tag="VE968_04370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HZU51091.1"
                     /translation="MARFEFKLPDIGEGIAEAEIVAWHVNVGDTIKEDQQIADMMTDK
                     ATVEMESPVAGKVLELAGNVGDQVPIGSVLAVIETEGADRAAETVDDSKDERPLADGA
                     VEATFEQAQELPTVTADAKA"
     gene            complement(365..1378)
                     /locus_tag="VE968_04375"
     CDS             complement(365..1378)
                     /locus_tag="VE968_04375"
                     /EC_number="1.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HZU51092.1"
                     /translation="MPSFNMIQALNDAHKVKMAADEDIVVFGEDVGYFGGVFRVTEGL
                     QKQFGKTRVFDAPISEGGIVATAVGMAAYGIKPVIEIQFADYIYPGYDQIVSEVAKMR
                     YRTAGEWPMPLVIRTPYGGGIFGGQTHSQSPESLFTHIAGLKVVVPSTPRDAKGLLIA
                     AIEDPDPVIFFEPKRIYNGPFDGHHDRPVKPWSKHPASEVPEGHYSVPIGKAAVVREG
                     GELTILAYGTMVHVALAAVEEKGIDAEVIDLRTLVPLDLETIEQSVKKTGRCLVVHEA
                     PRTSGFGAELVALVQERCFYHLEAPIERVTGWDTPYPHAYEWAYFPGPKRMQRALEKV
                     MRD"
     gene            complement(1378..2643)
                     /locus_tag="VE968_04380"
     CDS             complement(1378..2643)
                     /locus_tag="VE968_04380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate dehydrogenase
                     (2-methylpropanoyl-transferring) subunit alpha"
                     /protein_id="HZU51093.1"
                     /translation="MSDKDPSLRRNAPKLALHVPEPPFRPGDTPDFSNLVIPPAGSAP
                     KPDTNAPAAETHKLTTALVRVLGDDNQAVGPWDPKLQPDTLCKMLRDMVTVRIFDDRM
                     YRAQRQGKTSFYMKATGEEAIAVAAQTALDRDDMHFPTYRQQGLLIARGYPLVEMMCQ
                     IYSNRGDKLKGRQLPIMYSDRKHGFFSISGNLTTQFPQAVGWAMAAAIKGDSRIAMGW
                     VGDGATAEGDFHSAMTFAAVYNVPVILGIVNNQWAISTFSGIAGAERATFAQRAVGYG
                     VAGLRVDGNDALAVYAAVKWASERARSNLGATLIEFFTYRAEGHSTSDDPSGYRPTNE
                     AKVWPLGDPIERLKAHLVAIAEWDEERHSAMTAECDAQVRAAQKESEALGILPEQGKD
                     DIGSMFEDVYAEVPRHLREQRDQALDEAR"
     gene            2764..3054
                     /locus_tag="VE968_04385"
     CDS             2764..3054
                     /locus_tag="VE968_04385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019052213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3297 family protein"
                     /protein_id="HZU51094.1"
                     /translation="MSMADETETPPDRLSLDPRSEYYNEALLSRGVGIKFNGEEKTNV
                     IEYSISEGWIRVAAGRSRDRYGQPMTIKLKGKVEPYFEQAAEPSDQDASSEE"
     gene            complement(3030..>3349)
                     /locus_tag="VE968_04390"
     CDS             complement(3030..>3349)
                     /locus_tag="VE968_04390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51095.1"
                     /translation="ISHLMVGAKSQLVGGNIHQLRSVDSETHDQGGDRLMLGKLAGAW
                     LGEKMVGKNEGAKGAIIGYGAAALARRSVPALAAIALGGWAFKKLRARRSGGTDYSSD
                     EAS"
BASE COUNT          630 a         1018 c         1012 g          689 t
ORIGIN      
        1 gccttggcat cggcagtgac ggttggaagc tcctgcgcct gctcgaacgt tgcttcaacg
       61 gctccgtcgg ccagcggccg ctcgtccttg ctatcgtcaa cggtttcggc ggcgcggtcc
      121 gcgccttccg tttcgatgac cgcgagaacc gagccgatcg gcacctggtc gccaacgttc
      181 ccggcaagct cgagtacctt gccggcaacg ggcgactcca tttcgacggt cgccttgtcg
      241 gtcatcatat cggcaatctg ctggtcttcc ttgatggtat cgccgacgtt gacgtgccag
      301 gcgacgatct cagcctcggc gattccttcg ccgatgtccg gaagcttgaa ttcgaagcgg
      361 gccatcagtc tctcatcact ttctcaagag cgcgttgcat ccgtttggga ccgggaaaat
      421 aggcccattc ataggcatgc gggtaggggg tgtcccaacc ggtgacgcgc tcaatcggcg
      481 cttcaagatg gtagaagcag cgttcctgaa cgagtgcgac cagttccgcg ccgaacccgc
      541 tggtacgtgg tgcttcatga acgacgagac accggccggt ctttttcacc gattgttcaa
      601 tcgtctcgag gtcaagcggg acaagcgtcc gaagatcgat gacctcggcg tcgatccctt
      661 tctcttcgac cgcggcaagg gcgacatgga ccatcgttcc gtaggcgaga atcgtgagtt
      721 caccgccttc gcgaacgacg gccgccttgc cgattgggac gctataatgt ccttcgggaa
      781 cttcgcttgc cgggtgcttc gaccagggtt tgaccggccg gtcgtggtgt ccgtcgaagg
      841 gcccattata gattcgcttt ggctcgaaaa agatgactgg gtccgggtct tcaatcgcgg
      901 cgatgaggag gccctttgcg tcgcgaggag tcgaaggaac gacaactttc aagccggcaa
      961 tatgggtgaa gagggattcg ggcgactggc tgtgagtctg gccgccgaag atgccgccgc
     1021 cgtagggagt tctgattacg agcggcatcg gccattcacc cgccgttcgg tagcgcatct
     1081 ttgcaacttc gctgacaatc tggtcgtagc cgggatagat atagtcggcg aactggatct
     1141 cgatcacggg cttgatgcca taggcggcca tcccgaccgc cgttgcgaca atcccgcctt
     1201 cgctgatcgg cgcatcgaac acgcgcgttt ttccaaactg cttctgaagg ccttccgtca
     1261 cgcgaaagac accgccaaaa tagccgacgt cctcgccgaa caccacgatg tcctcatcgg
     1321 cggccatttt caccttgtgg gcatcattca gcgcctggat catgttgaag ctcggcatta
     1381 gcgggcctcg tccagcgcct ggtcgcgctg ctcacgaagg tgccgcggaa cctcggcgta
     1441 aacatcttcg aacattgatc cgatgtcgtc cttgccctgt tcgggaagaa tgccgagcgc
     1501 ttccgattcc ttttgggcgg cgcggacttg cgcatcgcat tcggcggtca tcgccgaatg
     1561 ccgctcctcg tcccactcgg caatcgcgac gagatgcgcc ttcaggcgct cgatcggatc
     1621 gccgagcggc cacaccttgg cctcgttcgt cgggcgataa ccggatggat cgtccgacgt
     1681 cgaatgcccc tcggcacgat aggtgaaaaa ctcgatgagc gttgcgccaa ggtttgatcg
     1741 tgcgcgctcg gaagcccact tcacggctgc atagacggcg agggcgtcgt ttccatcgac
     1801 ccggaggccc gccactccat aacccacggc gcgctgcgcg aaggtcgctc gctcggcgcc
     1861 ggcaattccg gaaaatgtcg aaattgccca ttgattgttc acgattccaa ggatgaccgg
     1921 cacgttgtaa acggcagcga aagtcatggc gctgtggaaa tcgccttcgg ccgttgcgcc
     1981 atcgccgacc caacccattg cgatgcggct gtcgcccttg atcgccgcgg ccattgccca
     2041 tccgaccgcc tggggaaatt gagtcgtaag attgccggaa atggaaaaga acccgtgttt
     2101 ccggtcggaa tacatgatcg gcagctgccg gcccttgagc ttgtcgccgc ggtttgaata
     2161 gatctggcac atcatctcga cgagcggata gccgcgcgcg atgagtaatc cctgctgccg
     2221 gtaggtcggg aaatgcatgt cgtcccggtc aagagcggtc tgcgccgcaa ccgcgattgc
     2281 ttcttcgccc gtcgccttca tgtagaagct ggtctttccc tgccgctgtg cgcggtacat
     2341 ccggtcatcg aagatccgga ccgtcaccat gtcgcgcagc attttgcaca aggtgtccgg
     2401 ctgaagcttg gggtcccacg gaccgaccgc ctggttgtca tcgccgagga cccgcacgag
     2461 cgccgtcgtg agcttgtgcg tttcggcggc cggtgcattc gtgtccggct ttggcgcgct
     2521 tccggcaggg gggatcacta agttcgaaaa atcgggtgtg tcgcccggcc ggaatggcgg
     2581 ctcgggcacg tgaagagcga gcttgggcgc gttgcggcgc aggcttggat ccttgtcact
     2641 cataaggccg ccgagcgctt aatcgtgact cgaaggcgcg gcaacagtcg acgtcacagc
     2701 gcgcatgttt cgcgatgtgc gcaagggcgc cggattgact ggagaacgcg gaagtctagg
     2761 gccatgtcca tggccgacga gactgaaaca ccgcccgacc gattgtcgct cgatccgaga
     2821 agcgaatatt ataacgaggc tctcctcagc cgcggcgtcg ggataaagtt caatggggag
     2881 gaaaagacca acgtcattga atatagcatc tcggaaggct ggatccgcgt cgctgcgggc
     2941 cgaagccgcg accgctacgg ccagccaatg acgatcaagc taaaaggcaa ggtcgagccc
     3001 tatttcgagc aggccgccga gccttccgat caggacgcct cgtccgagga atagtccgtt
     3061 ccgccggagc ggcgggcacg cagtttcttg aaggcccaac cgccgagcgc gatggcagca
     3121 agggcaggaa cgctgcgccg cgcaagtgcg gcggcgccgt agccaattat tgcaccttta
     3181 gcgccctcgt tctttcccac catcttttcg ccgagccacg cgccggcaag cttacccaac
     3241 atcagtcgat ctcctccttg atcatgcgtt tcagagtcga cgcttcgcaa ctggtgaatg
     3301 ttcccaccaa caagttggga tttggcgcca accattaggt gggaaattc
//
LOCUS       DASRBJ010000153         5612 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_576868,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000153 DASRBJ010000000
VERSION     DASRBJ010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5612
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_576868"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..410)
                     /locus_tag="VE968_04395"
     CDS             complement(<1..410)
                     /locus_tag="VE968_04395"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HZU51096.1"
                     /translation="MNAPFRASKRRYDYLIVGAGFAGSVLAERLASQHGARVLLIDRR
                     PHVGGNAYDEPNEAGILYHKYGPHIFHTNSQQVVDYLSQFTKWRDYEHRVLAFVRGKL
                     VPIPINRTTLNELFDANLRTDEEAAAYLASRAEPV"
     gene            complement(407..1468)
                     /locus_tag="VE968_04400"
     CDS             complement(407..1468)
                     /locus_tag="VE968_04400"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HZU51097.1"
                     /translation="MNVIFWEEPVEIGAHDTAFLQVREAPDAAGVRVAVPHLPKGMPE
                     DAREAALKRLLDAHTASLRGTLITWYYTPMMLPFSRHLDADVTVFDAMDELSKFKFAP
                     VKLLELEQELIDRSDVVFTGGSSLFEAKKDRHENVHCFPSSVDRAHFCKARARQFDPG
                     DQEDLPRPRLGFYGVIDERFDTELLDKVAAMRPNWSFVMVGPVVKISDGDLPKRPNIH
                     YLGGKTYEQLPAYLSGWDVALMPFAMNESTQFISPTKTPEYLAGGKPVVSTPIKDVVR
                     HYGHLEGVMIASSAEEFVDACERALELSRHPESGWLAEADLMLSATSWDTTQARMAGI
                     IHDLLGTRATGAAILVAAE"
     gene            1878..3410
                     /locus_tag="VE968_04405"
     CDS             1878..3410
                     /locus_tag="VE968_04405"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010214961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HZU51098.1"
                     /translation="MGTTIDELETRRELARLGGGDKRIAAQHSKGRLTARERLSVLLD
                     TGSFEEYDMFVEHSCSDFGMAEQRVPGDGVVTGSGTINGRLVYVFAQDFTVFGGSLSE
                     RHAQKICKIMDMAMKVGAPVVGLNDSGGARIQEGVASLAGYAEVFQRNVLASGVIPQI
                     SVIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVVKTVTNEVVSQEELGGAITHT
                     TKSGVADVAFDNDIDALLATRDFVDFIPLSNRHDLPERPCEDPIDRIEESLDTLVPPS
                     ASTPYDMHELIRKVADEGEFFELQPGHAANIIIGFVRIEGRSVGVVANQPMVLAGVLD
                     IASSKKAARFVRFCDAFEIPILTFVDVPGFLPGVAQEHNGIIKNGAKLLFAYAEATVP
                     KITVITRKAYGGAYDVMASKHLRGDLNYAWPTAEIAVMGAKGAVEIIFRKDIGDPEKI
                     AERTREYEERFANPFVAASKGFIDEVIMPHSTRRRVAMGLRKLRNKQLENPWKKHDNI
                     PL"
     gene            3487..3870
                     /locus_tag="VE968_04410"
     CDS             3487..3870
                     /locus_tag="VE968_04410"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HZU51099.1"
                     /translation="MHEWLFDGGTVLSASPSPHIVPAPWSDERSIDPEEAFVAALSSC
                     HMLFFVDFARRAGFVVDSYIDEAEGTLESRGDGTRAITRVILRPKVKWALKSPGDVAV
                     AELHQRAHEACFIANSVRTEVTVDV"
     gene            3867..4280
                     /gene="mce"
                     /locus_tag="VE968_04415"
     CDS             3867..4280
                     /gene="mce"
                     /locus_tag="VE968_04415"
                     /EC_number="5.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA epimerase"
                     /protein_id="HZU51100.1"
                     /translation="MKLGRLNHVGIATPSIERSLELYRTMFDAQQHGPAFELPAQGVR
                     VCFVDTPNSQIELIEPLGASSPIAKFLEKNPLGGQHHVCFEVPDIHAAKRELEERGAR
                     TLGEPRIGAHGTLVFFVHPKDMGGVLTEIMETARS"
     gene            complement(4299..>5612)
                     /locus_tag="VE968_04420"
     CDS             complement(4299..>5612)
                     /locus_tag="VE968_04420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007680988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HZU51101.1"
                     /translation="MGEQAVALAKAVGYYSAGTVELIVSGADPTGQSFYFLEMNTRLQ
                     VEHPVTEEITGLDLVEQMIRVAAGEELAFGQADVALNGWAVETRVYAEDPYRGFLPST
                     GRLIRYRRPTEVGEPMWRSPERGGGEAAKDFSSSAAQHLVRVDDGVADGGEVSMFYDP
                     MIAKLITWAPSRIEAIDAQLDALDEFVIDGISDNVDFLSALMQHPRFRSGAITTGFIA
                     EEYPGGFNGAPADEALVMDLAVLAGMVSVITDERAAKISGQLGGPLHFPCERSVRIDG
                     AGEHRVRIKPYKGGTLAVVDGGELIDIVGRWTPGQRLLTVLVDGRKRTLQVRRVGRNW
                     ELQTRGASHKIQVLPLHVAELSKYMIEKPAPDLSRLLLAPMPGLLTKLDVTVGDRVEP
                     GQPVAVMEAMKMENILRAPKAATVKATPANAGDSLMVDQVIIEFE"
BASE COUNT         1177 a         1662 c         1653 g         1120 t
ORIGIN      
        1 accggctctg cgcgcgaggc gagatacgct gccgcttctt cgtcggtgcg gagattcgca
       61 tcgaacagtt cgttgagcgt ggtacggttg atcgggatcg gtaccagctt gccgcggacg
      121 aacgctagaa cgcgatgttc gtagtctcgc cacttcgtga actgtgacag atagtcgacg
      181 acctgctggc tgttcgtatg gaaaatgtgt ggcccgtact tgtgatagag gatacccgcc
      241 tcgttcggct cgtcgtacgc gttaccgccg acgtgaggcc gacgatcgat caacagcacg
      301 cgtgctccgt gctggcttgc gagccgctcc gccagcacgg agccggcgaa cccggctcca
      361 acgatcaaat agtcgtagcg gcgcttggaa gcgcgaaacg gcgcgttcat tctgctgcca
      421 ccagaattgc agcgccggtg gcccttgtgc cgagcaagtc gtgaatgatc ccggccatgc
      481 gcgcttgcgt cgtatcccag ctcgttgccg agagcataag atcagcctcg gctagccagc
      541 cactttcggg gtggcgcgag agctcgagcg ctcgttcgca cgcgtcgaca aactcctcgg
      601 cactcgaagc aatcatcacg ccttcaaggt gaccgtaatg ccgaacgacg tccttgatcg
      661 gtgtggagac aacgggcttt ccgccggcga gatattctgg cgtcttggtc ggggaaatga
      721 actgcgtcga ctcgttcatt gcgaacggca tcagcgcgac atcccagccc gagagataag
      781 cgggaagctg ctcgtaggtc tttccgccga gatagtgaat gttcggccgc ttcggcaggt
      841 cgccgtcgga gatcttcacg accggaccca ccattacgaa agaccagttg gggcgcatcg
      901 ccgcaacctt gtcgagcagc tcggtgtcga accgctcgtc gatgactccg tagaacccga
      961 gccgcggtcg tggcaggtct tcctgatcgc ccggatcaaa ctggcgcgct cttgccttgc
     1021 aaaagtgcgc acggtcgacg gacgacggga aacaatgaac gttttcgtga cggtccttct
     1081 tcgcctcaaa aaggcttgat ccgccagtaa acaccacatc cgaccggtcg atcagctcct
     1141 gctcgagttc gagcagctta accggcgcaa atttgaactt gctgagctcg tccatggcgt
     1201 cgaaaaccgt gacgtcggcg tcgagatgcc gcgaaaatgg cagcatcatc ggcgtataat
     1261 accaggtgat cagagttccg cgaagcgatg cggtgtgtgc atcgagaagc cgcttcaagg
     1321 cggcctcacg cgcatcttcc ggcattccct tgggtagatg cgggacggcg acacgcactc
     1381 cggctgcatc cggtgcttcg cgcacctgga gaaatgccgt gtcatgagcg ccaatttcaa
     1441 ccggctcttc ccagaagatg acgttcattt cacgggcaaa cctcgacatg aggtgttgtg
     1501 ggcgctggaa gacgaaattc caacgcaggt gcgaaaagca aagcagggta gtggggtctg
     1561 gatctggcgc cgagggctca agcagagact caactggcac cccgacgcgc gtcagcattt
     1621 tcctttgtac ctccgtgatt ttggtcattt ggataacgca ggatgaacgg gccgaacggc
     1681 attgcggttc cgcaacgttg atcaaagtta gtccgaatct tgtgttgctg cgccgcaaca
     1741 agcgccgaac cggttccgcc gtgcgtcggc gcgccgcgtc acgctgacag accgtacaac
     1801 gctcatccgc ttgaacccgc gccgattgac gtcgtggacg gcccgtggaa ggacgccgaa
     1861 gctccaggag agacgctttg ggaacgacga tcgacgaact cgagacacgc cgtgagcttg
     1921 cccgacttgg cggcggcgac aaacgcattg cagcgcagca ttcaaaaggt cggcttacgg
     1981 cgcgcgagcg gctttcggtt ttgctcgata ccgggagctt cgaagaatat gacatgttcg
     2041 tcgagcatag ttgctcggac ttcggaatgg ccgagcagag ggtgccagga gacggagtcg
     2101 tgaccgggtc gggcacgatc aacggccgtc tcgtctatgt tttcgcgcaa gattttacgg
     2161 ttttcggtgg ctcgctatcg gagcggcacg cccagaaaat ctgcaagatc atggatatgg
     2221 cgatgaaggt cggggcgccg gtggtcggcc tcaacgacag cggaggcgcg cgaatccagg
     2281 aaggtgtagc gagccttgcc ggctacgccg aagtgttcca gcgcaacgtt ctcgcaagcg
     2341 gcgtcattcc ccagataagc gtcatcatgg gaccatgcgc cggcggcgcg gtctattccc
     2401 ccgcaatgac cgactttatc ttcatggtga aggacagctc ctacatgttt gtcactggcc
     2461 ctgacgttgt gaaaacggtt accaacgaag ttgtcagcca ggaagaactc ggtggagcca
     2521 tcacgcacac gacgaaatct ggcgttgccg acgtcgcctt cgacaacgac atcgacgccc
     2581 tccttgcaac cagggatttc gtcgatttca ttccgctttc gaaccggcat gacttaccgg
     2641 agaggccctg cgaagatcca atcgatcgca tcgaagagag tctcgacacg ctggtgccgc
     2701 cgagcgccag cacaccgtac gacatgcacg aacttatccg aaaagtcgcg gacgagggtg
     2761 aattcttcga gctgcagcct ggtcatgctg cgaacatcat tatcggattc gtgcggatag
     2821 agggccggtc ggtcggagta gttgccaatc aaccaatggt gctcgccggc gttctcgaca
     2881 tcgcaagctc gaagaaggct gcgcgcttcg tgcgtttctg cgacgctttt gagattccga
     2941 tacttacgtt tgtcgacgtg ccgggtttcc ttcccggagt tgcccaagag cataatggaa
     3001 taatcaagaa cggcgccaag ctgctgttcg cctatgccga ggccacggtc ccgaagatca
     3061 cggtgattac gcgcaaggcc tatggcggtg cctatgacgt catggcgtcg aaacatcttc
     3121 gcggcgacct caattacgcg tggccaactg ctgaaattgc ggtgatgggc gcaaagggcg
     3181 cggttgaaat catctttcgc aaagacattg gagaccccga gaagattgcc gagcgcaccc
     3241 gcgaatatga ggagcgattc gcgaacccct tcgtcgctgc gagcaagggc ttcattgacg
     3301 aagtgatcat gccgcactcg acacggcggc gtgtggcgat gggacttcgc aagctcagga
     3361 acaagcagct tgagaacccg tggaagaaac acgacaatat tccgctgtaa cgtgagccgc
     3421 cacaccgcaa caattcgatg gaaccgcaac tccacgagcg actttgcagc gggagcttac
     3481 agccgcgtgc acgaatggct atttgatggt ggcacggtcc tctcggccag ccccagccca
     3541 catattgttc ccgcaccgtg gtccgatgaa cgatcgatcg atcccgagga agcgttcgtt
     3601 gccgccttgt cctcttgcca catgctgttt ttcgtcgact ttgcgcggcg tgccggtttt
     3661 gtcgtcgaca gctatatcga cgaggctgaa ggaacgctcg aaagccgagg cgatggcacg
     3721 cgtgcaatca cgcgcgtaat tcttcgcccc aaagtaaagt gggctttgaa atctcctggc
     3781 gacgtcgccg ttgccgagct gcaccagcga gcgcacgagg cttgtttcat cgcgaactcg
     3841 gttagaacgg aagtgacagt ggacgtatga agctaggacg tctgaaccac gtgggcatcg
     3901 cgactccatc gatcgagagg agtctcgaat tgtatcggac gatgttcgat gcccaacaac
     3961 acggaccagc cttcgagctt cctgcgcagg gcgtccgtgt ctgctttgtc gatacgccaa
     4021 acagccagat agaactgatc gagccgttgg gcgcaagctc gccgatcgcg aagttcctcg
     4081 agaaaaaccc gctcggcggg cagcatcacg tctgctttga agttccggat attcacgcgg
     4141 caaaacggga gctcgaagaa cgcggtgctc gaacgctcgg cgagccccga attggcgccc
     4201 acggcactct cgtctttttt gttcacccga aggacatggg cggcgtcctc accgagatca
     4261 tggagaccgc aaggagctga ttgcccgcca gagcaggcct attcaaactc gatgataacc
     4321 tggtctacca tgaggctgtc accagcgttc gcgggcgttg ccttgaccgt ggcggctttg
     4381 ggtgcgcgaa ggatgttttc catcttcatt gcttccatga ccgcgacggg ctgaccaggt
     4441 tcgacccggt caccaaccgt gacgtccagc tttgtaagaa gtcctggcat tggggcgagc
     4501 agcaaccgcg acaggtcagg cgcaggcttc tcgatcatat atttcgagag ttcggcgacg
     4561 tgcaatggca gaacttggat cttgtggctc gcgcctctcg tctgcagttc ccaatttcgg
     4621 ccgacgcgcc gaacctgcaa tgttcttttg cgcccgtcga cgagcacggt gagcaatcgc
     4681 tgtcctggag tccaccggcc gacaatgtcg atgagctcgc caccgtcgac aacggccaag
     4741 gttccaccct tgtacggctt gatgcggacg cgatgctcgc cggcaccatc aatacggact
     4801 gatcgctcgc atgggaaatg gagtgggccg ccgagctggc cgctaatttt tgccgctcgc
     4861 tcgtccgtga ttactgaaac cataccggcg agaacggcaa gatccatcac gagcgcttca
     4921 tcggccggcg caccgttgaa tccaccggga tattcctcgg cgatgaagcc cgtcgtaatt
     4981 gcgcccgacc gaaaccgagg gtgctgcatc aatgccgaga ggaaatcgac attgtcgctg
     5041 atcccgtcga taacgaactc gtcaagggca tcgagctggg catcaatagc ctcgatccga
     5101 gacggcgccc aggtgatcag ctttgcgatc atcggatcgt agaacatgct gacctctccg
     5161 ccgtcggcga ccccatcatc cactcgaacg aggtgttgcg cagcgctcga cgagaaatcc
     5221 tttgcagcct cgccgccccc gcgttccggc gagcgccaca ttggctcgcc gacttctgtt
     5281 ggtcgccgat aacgaatcaa ccgacccgtg ctcggaagaa aaccccggta gggatcctcc
     5341 gcgtacacgc gcgtctcgac ggcccagcca ttcaacgcca catcggcttg tccaaacgca
     5401 agctcctcgc cagcagcgac gcggatcatc tgctcgacaa ggtcgagccc agtgatctcc
     5461 tcggtaaccg gatgctcgac ctgcaggcgt gtattcatct cgaggaaata gaagctttga
     5521 ccggttggat cagcgcccga gacaatcagc tcgaccgtgc cggccgaata atagccaacc
     5581 gccttggcaa gcgcgaccgc ctgctcgccc at
//
LOCUS       DASRBJ010000154         2186 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_624056,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000154 DASRBJ010000000
VERSION     DASRBJ010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2186
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_624056"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..828)
                     /locus_tag="VE968_04425"
     CDS             complement(<1..828)
                     /locus_tag="VE968_04425"
                     /inference="COORDINATES: protein motif:HMM:NF025131.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stimulus-sensing domain-containing protein"
                     /protein_id="HZU51102.1"
                     /translation="MASVIGSTSNEDADLRLKWSGRWTLAHRILAINLITVLLIALST
                     LYLDVFRNRLSKERARQTRIEALATALAIEAAGPDHREPILATVSKSTGSRLRVFGPD
                     GRLVADSWTMTGPTYELRDPNGQRWTQEAARSLDRAFNTLVGAKRFEDFVEPGVDQLQ
                     SWPEAVKAKQSGNPVTKVRNAPDLTPVISAAVPLRGGVLLATTNDRAFTHLVRTQRAI
                     IGGVMVLLVGVSVFLSLFLAQTIVRPLRRLALAAHRVRLGRSREVNVPRLPSRSDEIG
                     "
     gene            complement(800..1507)
                     /locus_tag="VE968_04430"
     CDS             complement(800..1507)
                     /locus_tag="VE968_04430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HZU51103.1"
                     /translation="MSQVIALVDDDRNILTSVSIALQQEGFVTRVYSDPLVALKAIND
                     NPPDLGVFDIKMPTLDGMELLRRVREFSSVPVIFLTSKDDELDEALGFAMGADDYISK
                     PFSQRLLIARIRAILRRQELERGELASSNAESEPARMERGRLVMDPARHKVLWDGRTV
                     SLTVTEFLILEALAQRPGVVKSRNQLLDVAYNDDVYVDDRTIDSHIKRIRRKFRSVDP
                     QFDSIETLYGVGYRFDE"
     gene            1777..>2186
                     /locus_tag="VE968_04435"
     CDS             1777..>2186
                     /locus_tag="VE968_04435"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HZU51104.1"
                     /translation="MSDRVPHRGLEAQGIATGAEIFWNLTTAPLVEHAVRRGEGLLAK
                     DGPLVVRTGRHTGRSAQDKYTVKDSLTENVIWWNNGNKPMEPAAFDRLHDDFLQALAA
                     MDQLYVADLFGGSQPEHRVRVRVVNELAWHNLFIR"
BASE COUNT          442 a          645 c          661 g          438 t
ORIGIN      
        1 cccgatctcg tcacttcgcg agggcaggcg cggcacgttc acctcgcgcg agcggccaag
       61 ccgcacgcgg tgcgcagcaa gagcgaggcg tcggagcggc cgaacgatcg tctgcgcaag
      121 gaacagcgac agaaagacgg agaccccaac cagcaggacc atgacgccgc cgatgatcgc
      181 tcgttgcgtt cgaacaaggt gcgtaaaggc ccggtcattg gtcgtcgcaa gcagaacgcc
      241 gccacgcaat ggaactgccg ccgagattac cggggtcaga tctggcgcgt tgcgaacctt
      301 tgttacggga ttgccggact gctttgcctt caccgcttcc ggccatgact gtaactgatc
      361 gacgccgggc tcgacgaaat cctcgaacct cttggcgcca acgagcgtgt tgaacgcccg
      421 gtccagcgat cgcgccgctt cctgtgtcca cctttggccg ttcgggtccc tcagttcgta
      481 ggtcggaccg gtcattgtcc agctatcggc gacgagccgt ccgtccggcc cgaatacgcg
      541 caagcgactc ccggtcgact tggatacggt ggcaaggatc ggctcgcggt gatccggacc
      601 ggctgcctcg atcgcaagcg ctgttgcaag cgcctcaatc cgcgtttggc gagcgcgctc
      661 cttgctgagg cgattgcgga acacgtcaag gtacagcgtg ctgagtgcga tcagcagcac
      721 cgtaatgaga ttgattgcaa gaatccgatg cgcgagcgtc cagcggccag accattttag
      781 ccggagatcg gcatcttcgt tactcgtcga accgataacc gacgccatac aaggtctcga
      841 ttgaatcaaa ttgtggatcg acggagcgga acttgcgccg gattcgcttg atgtggctgt
      901 cgatggtgcg gtcgtcgaca taaacgtcgt cgttgtaggc aacgtcgagg agctggtttc
      961 tcgatttaac gacacccggt cgttgagcaa gcgcttcgag aatgagaaat tcggttacgg
     1021 tgaggctgac cgttcggccg tcccagagca ctttgtggcg cgccggatcc atgaccaggc
     1081 gtccacgctc cattcgggcc ggctcggact cggcgttgct tgacgcaagc tcgccacgct
     1141 cgagttcctg ccgacgcaga attgctcgga ttcgcgcaat gagaaggcgc tgcgaaaaag
     1201 gcttcgaaat atagtcgtcc gcgcccattg cgaacccgag cgcttcgtca agttcgtcgt
     1261 ccttcgaggt aagaaagatc acgggcacgg agctgaattc gcgaacgcgc cgaagcagtt
     1321 ccattccgtc gagggttggc atcttgatat cgaagacgcc aaggtcaggc ggattgtcgt
     1381 tgatcgcctt gagcgcgacc agcgggtccg agtaaacccg cgttacaaat ccctcctgct
     1441 gaagcgcgat ggacaccgac gtcaggatgt ttcgatcatc gtcgactaag gcaatcactt
     1501 ggctcactga agtcccttgc cgatgcctcg atcgataggc gagaagcgat accgagcaca
     1561 ggcgtcctag acaagcggcg gtgctcatcc ccctatttca ctgggctgtt cgaatgcggg
     1621 acactgttag cgctatcgtc aggcacaaag accttctcga acgttatccc gttttgacca
     1681 cgcaactttt tcggggttat acgcctgcat acgtatgcgg cggcaggccg gctggccgcc
     1741 gccgcattga acatttggaa agagggattt gtcgacgtga gtgatcgggt tccgcatcgc
     1801 ggactagaag cgcagggcat cgccaccggc gcggaaatct tctggaatct cacgacagcg
     1861 ccactcgtcg agcacgctgt tcgtcgtggc gaggggctgc tcgcgaagga tggcccgctt
     1921 gtcgttcgta ctggtcggca caccggccga agcgcgcaag acaagtatac cgtcaaggat
     1981 tcactgaccg agaatgtgat ctggtggaac aacggcaaca agccgatgga gcctgccgcg
     2041 ttcgaccgac tgcacgacga tttcctccaa gcgctcgccg caatggatca gctttatgtc
     2101 gctgatcttt ttggtggttc gcagccggag catcgcgtcc gcgtgcgcgt cgtcaacgaa
     2161 ttagcctggc acaacctgtt catccg
//
LOCUS       DASRBJ010000155         4895 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_526153,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000155 DASRBJ010000000
VERSION     DASRBJ010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4895
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_526153"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..849)
                     /locus_tag="VE968_04440"
     CDS             complement(<1..849)
                     /locus_tag="VE968_04440"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HZU51105.1"
                     /translation="MSARFRPFPALKGEQALASDPRVHAALSASAGTGKTQVLTARVL
                     RLLLNGARPESILCLTFTKAAAAEMANRIGARLAAWVRLDDDDLGTELQHLGERNDEP
                     NRERARQLFARVLDCSGGLKIQTIHSFAQSLLSAFPAEAGIVPGLQPIEGRAEQELVH
                     RTLAELMADAETGANHGLIADVQSLSRRLGETGAVEYLQETARHPEALAAIGSSAVVE
                     QRVRQIMDLPQSAESYLAEQCSDDGFECDLLRAVAAANRAWGKSNGLKIAGSIDRWLA
                     MPPTDRA"
     gene            891..1037
                     /locus_tag="VE968_04445"
     CDS             891..1037
                     /locus_tag="VE968_04445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51106.1"
                     /translation="MTNSKDEFDRASEQRRSKLVKAGVAVGIGSAAIVAALLYASQVK
                     KKPR"
     gene            complement(1043..3913)
                     /locus_tag="VE968_04450"
     CDS             complement(1043..3913)
                     /locus_tag="VE968_04450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007404014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HZU51107.1"
                     /translation="MPDPQRVAVFTIPSERPFADALVAGLIDRFGREPLVLARGRILL
                     PNNRAVRAVTDAFVRASGSGLLLPRLIPVGDPELDERAGGALDAIDTDLLPRAADPDE
                     RILRLASILPGEGAAERVRLATDLARTLDALIVEEIEPRRLKDAMDESSDLARHWEHS
                     LARLQLIYEAWPRLLEDEGRIDLTDRRNRLLHGLARRWKEQPPAGFTVAAGITTGAPA
                     VAALLASVASMSSGILVLPGLWLSDVLADEEWDALGANGTGRGEVTHPQYHLKLLLER
                     MGIARAEVQVWPFTGGASSSPVRTQVIANAMAASDFSHKWKGLQKQARRLNGIRLAEL
                     PDSASEAQAIALALRHVLETPGKTAALVTPDRQLAGRVSALLARWGVVADDSAGTALA
                     GTAAGSLLLAIANAAAEQLAPVALLALLKHPLVGGEGDQRLEWLEAVRELDMKLRGPR
                     PAAGLVGLDKHFGSLPAWRKVCSTIEQVDRFLVQEQSLADLAGGLSTLTDSLARDAAW
                     RGPDGRMAADFISELQASDASNDLVVSADDAVPLLRQLLGRRAVRPAYGGHPRLSIWG
                     LLEARLQRADLVVLGGLNEGVWPAVSTPDPWLPPKVRAVLQMPTADFRIGLAAHDFAS
                     ALGAPEVLVTRARRDSKAPTIASRFLLRLNAMCGSLPRDRKLEALTRTLDDAGPPRPA
                     ERPAPVPPLEERPGKITVTQVDRLNADPFSFYASAILNLRSLERVDAEHTAAWKGTAV
                     HAVFQDWLQHDDCDPDKLRGRAERLLGGEAIHPMLRALWAPRLLEAIDWIAEMERENR
                     SVGRRPLAAEARGETVLDGVTIEGRADRIDRLSSGGVAIVDYKTGATPSQKAVDAGFA
                     LQLGLLGLIARANGFKDAQGHPQTFEYWSLARFNGTFGRLVRPAKDVTPTEFLDDAYS
                     NFARAAKKWLTGSEPFTAKLNPAYAPYGDYDQLMRLEEWYGR"
     gene            complement(3906..4601)
                     /locus_tag="VE968_04455"
     CDS             complement(3906..4601)
                     /locus_tag="VE968_04455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HZU51108.1"
                     /translation="MIMAAGLGKRMRPLTATKPKPLIEVNGKALLDHVLDRLRVAGVK
                     KVVVNVHYLADALEAHLATRAEGLEVVISDERTLLMETGGGLVKAAPLIDSDPFLALN
                     SDNLWIDGPADTIKLLASQWDSRKMDALLLLVPQARAVGHKGLGDFHMDREGRLRRRA
                     RSHVAPFVFTGIQIVAKRLLREAPEGPFSTNILWDRAIEEGRAFGAVHQGLWFDVGTP
                     QSIPLTEAALEDA"
     gene            complement(4664..>4895)
                     /locus_tag="VE968_04460"
     CDS             complement(4664..>4895)
                     /locus_tag="VE968_04460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006965083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminoglycoside phosphotransferase"
                     /protein_id="HZU51109.1"
                     /translation="FERAYWALAAQRNTRILGVFTRLWKRDGKPGYRRFQPRMWGLLE
                     RDLERPDLDPVRTWFDANIPPELRRDPWSEAA"
BASE COUNT          973 a         1559 c         1503 g          860 t
ORIGIN      
        1 cgctcgatcg gtcgggggca tcgcgagcca gcgatcgatg ctgccggcaa ttttgaggcc
       61 gttggatttg ccccacgcac ggttcgcggc ggcaaccgcg cgaaggagat cgcattcgaa
      121 gccgtcatcc gaacattgct cggcaagata ggattcggcc gattgtggaa gatccatgat
      181 ttgacggacg cgttgctcga ccaccgccga actgccgatt gcggccagcg cttccgggtg
      241 tcttgccgtt tcctgtagat actcgacggc gccggtctcg ccgaggcggc ggctcaagct
      301 ttgcacgtcg gcaatgagac cgtgattggc acctgtctcg gcatcggcca tcagctcggc
      361 caaggtgcga tgcacgagct cctgctcggc ccggccctcg atcggctgca gccctgggac
      421 gattcccgcc tcggccggaa acgccgaaag aagactttgc gcgaagctat gaatggtctg
      481 gatcttcaga ccgccggagc agtcgagcac acgcgcaaac aattgtcttg ctcgttcgcg
      541 gttgggctcg tcgttgcgct cgccaaggtg ctgaagctca gtaccaagat catcgtcgtc
      601 aagccgaacc cacgcggcca accgagcacc gatgcgattc gccatctcgg cggcagcggc
      661 cttcgtaaac gtgaggcaaa gaatggattc tggccgggcg ccgttaagca acaggcgcaa
      721 cacccgcgca gtcagcacct gggttttccc ggtcccggcg gaagcagaga gagccgcgtg
      781 gacacgagga tccgacgcga gtgcctgttc ccctttgagc gccgggaatg gcctgaaacg
      841 cgcgctcacg gcgcttccca atatcgcatc gaggccatag aaatgagctc atgacgaaca
      901 gcaaagacga attcgaccgc gcaagcgagc agcgccgcag caagctggtc aaggcgggtg
      961 tcgccgtggg tatcggatct gcggcaatcg tcgccgcgct cctttatgcc tcgcaggtca
     1021 agaaaaagcc gcgctaagga catcagcgac cgtaccattc ttccagccgc atgagctggt
     1081 cgtagtcgcc gtaaggagca taggcaggat tgagcttggc ggtgaacggc tccgatccgg
     1141 tcagccactt cttcgctgcc cgagcaaagt tcgaataggc atcatcgagg aattccgtcg
     1201 gcgtcacatc cttggcgggg cgcacgaggc gtccaaacgt gccgttgaaa cgcgcaagag
     1261 accaatattc gaatgtttga gggtgtcctt gcgcatcctt gaagccgtta gcacgcgcaa
     1321 tcaggcccaa gaggcccaat tggagagcaa aacccgcgtc gaccgccttc tggcttggcg
     1381 ttgctccggt cttgtagtcc acaatcgcca caccgccgct tgaaaggcga tcgatgcggt
     1441 ctgcgcgacc ttctatcgtc acgccgtcga gcactgtctc acctcttgct tcggcagcga
     1501 gtggtcgacg gcccaccgac ctgttctcgc gttccatttc cgcgatccaa tcgatggcct
     1561 caagcaaacg gggcgcccat agcgcgcgca acatcgggtg gatcgcttcg ccgcccagca
     1621 atcgttccgc gcggccacgg agcttgtcgg ggtcgcagtc atcatgctgg agccagtcct
     1681 gaaacacggc atggactgcc gtgcccttcc atgcagcagt gtgctccgcg tcgacccgtt
     1741 cgagcgagcg taaattgagg atggccgatg cgtaaaagga aaatggatcg gcattaagcc
     1801 gatcaacctg tgtgaccgta atcttccccg gtcgctcctc gagcggtggg accggagctg
     1861 gtcgctccgc cgggcgcggc ggccccgcgt catcaagcgt tctggtcagt gcttcgagct
     1921 tccggtcgcg cggaagagac ccgcacatcg cgttcagtcg gagaagaaag cgcgatgcaa
     1981 tcgtcggcgc cttcgaatcg cgccgggcgc gcgtgacgag gacctcgggc gcgccgagcg
     2041 cgcttgcgaa atcatgcgct gcaagaccga tccgaaagtc ggcggttggc atttggagaa
     2101 ccgcgcgcac ctttggcggc agccacggat cgggcgtcga aactgctggc caaacgcctt
     2161 cgttgaggcc gccgagcacg acaaggtccg cgcgttgaag ccgagcctca agcaagcccc
     2221 agatcgacaa tctgggatga ccgccatagg caggacgcac ggcgcgtcgc cccaacagct
     2281 gacgcaacaa tggcacggcg tcatccgccg atacgaccag gtcgttcgac gcatccgacg
     2341 cctgcagttc ggaaatgaag tccgcggcca ttcggccatc gggtccgcgc catgcggcat
     2401 cgcgcgcaag cgagtccgtc aacgtcgaaa gacccccagc aaggtcggca agcgactgct
     2461 cttggaccag gaagcgatcg acttgctcga tcgtcgagca caccttccgc catgcaggaa
     2521 gactcccaaa atgcttgtcg agcccgacaa ggccggctgc aggacgcggc ccacgcaact
     2581 tcatgtcaag ttcgcggacg gcttccagcc attcaagtcg ttgatcgccc tcaccaccga
     2641 ccagcggatg cttgaggagc gccagcaagg cgactggcgc aagctgttct gccgccgcat
     2701 tggcaatcgc caggagcaag ctgccagccg ccgttcccgc gagcgcggtg ccggcactat
     2761 cgtccgcgac gacaccccag cgtgccaaga gcgctgaaac acgtccagcg agctggcggt
     2821 ccggggtgac cagcgctgcg gtttttcccg gtgtttccag cacgtgacgc agtgcaagag
     2881 caattgcctg cgcttcggat gccgaatcgg gaagctcggc aagcctgatt ccgttcaatc
     2941 gccgagcctg tttctgcagc cccttccact tatgtgagaa atcggaagcg gccattgcgt
     3001 tcgcgatcac ttgcgtccgc acaggcgatg acgacgcacc tcccgtgaac ggccacacct
     3061 gaacttccgc gcgggcaatc cccatccgct cgagcaacag cttcaaatga tattgcggat
     3121 gcgtgacctc gcctcgaccg gtcccattcg cgccaagagc atcccattcc tcgtcggcaa
     3181 ggacatcgga gagccacagc cccggcaata caaggatgcc cgaggacatg ctcgcaacgc
     3241 ttgcgagcaa cgcggcgacg gccggtgcgc cggtcgtgat tccggcagca acggtgaaac
     3301 cggccggcgg ctgctctttc cagcgtcggg caagcccatg aagaaggcga ttgcgccggt
     3361 ccgtaagatc gatcctcccc tcgtcctcga gaagccgggg ccaggcttcg taaatcagtt
     3421 ggaggcgcgc gagagagtgc tcccaatgcc gcgcgagatc gctgctctcg tccatggcat
     3481 ctttgagacg tcgcggctcg atttcctcga cgatgagcgc atccagcgtc cgcgccaggt
     3541 cggtagcaag tcgaacgcgt tcggcagcac cttcgcccgg aagaattgat gccaaccgca
     3601 aaatccgctc gtcaggatcg gctgcgcgcg ggagcagatc cgtgtcgata gcgtcgagtg
     3661 cgcctccggc tcgctcatcc aactcgggat caccgacggg gatgagacgc ggcaacaaga
     3721 gcccgctccc acttgctcgt acgaacgcgt ccgtgacggc gcggacggcg cgattgttgg
     3781 gaagcaatat gcggccgcgg gcaagcacca acggctcgcg gccgaagcgg tcgatcagtc
     3841 cggcgaccaa cgcgtcggca aacggacgct cggaagggat tgtgaacacg gcgacccgct
     3901 gcgggtcagg catcctcgag cgctgcctcg gtcagaggaa ttgactgggg agtgccgaca
     3961 tcgaaccaaa gcccctggtg caccgcacca aaggcgcgac cttcttcgat cgcccgatcc
     4021 cacaaaatgt tcgttgaaaa tggtccttcg ggcgcttcac ggagcagccg cttggcgaca
     4081 atctggatac cggtgaacac aaatggcgcg acgtggctgc gtgcccggcg gcgaaggcga
     4141 ccttcgcggt ccatgtggaa gtcaccaagc cctttatggc caaccgcgcg tgcctgcggc
     4201 acaaggagca gcaaggcgtc catcttcctg ctatcccatt gagaagcgag gagcttgatg
     4261 gtgtcggccg ggccatcgat ccacagatta tcgctgttga gcgcgagaaa tggatcactg
     4321 tcgatgagcg gcgctgcctt cacgagcccg ccgccagtct ccatcagcag cgtccgctca
     4381 tccgagatga caacttctag cccttcagca cgcgttgcga gatgcgcctc gagagcatcg
     4441 gcgagatagt ggacgttcac gacgactttc ttgactcccg caactcgcaa gcgatccagc
     4501 acatggtcga ggagcgcctt gccattcact tcaatgagcg gcttgggctt ggttgcagtc
     4561 agtggtcgca ttcgtttgcc aagaccagcc gccatgatca ttgcggtatg cggaacctcg
     4621 gcttcgactt cggcacgcag ccgcagcgct cggcgcgagg aactcacgcg gcctcactcc
     4681 agggatcccg ccgaagctct ggtggaatgt ttgcgtcgaa ccacgtacgt accggatcga
     4741 ggtcgggacg ttcgaggtcc ctttcgagaa gtccccacat ccgcggctga aaacgtcgat
     4801 agccgggctt gccatcgcgc ttccaaaggc gggtgaagac gccgaggatc cgggtattgc
     4861 gctgagcggc gagtgcccaa taggcgcgtt cgaag
//
LOCUS       DASRBJ010000156         2983 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_624535,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000156 DASRBJ010000000
VERSION     DASRBJ010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2983
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_624535"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..555
                     /locus_tag="VE968_04465"
     CDS             <1..555
                     /locus_tag="VE968_04465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HZU51110.1"
                     /translation="WWNAPVPAFGDPEAWLAIVGLAPGKHGANRTGRPFTGDYAGELL
                     YSTLLKYGLAEGEYAASQSDGLRLSGAIILNAVKCLPPANKPEPREIATCSNYFEASL
                     AALPNVRVLVALGQIAHVASARALGLPPSGTKFAHGAEHVAPTGRILLSSYHCSRYNQ
                     NTGRLNAGMFESVFERALALRCPR"
     gene            complement(539..1390)
                     /gene="aguB"
                     /locus_tag="VE968_04470"
     CDS             complement(539..1390)
                     /gene="aguB"
                     /locus_tag="VE968_04470"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0050126 - N-carbamoylputrescine amidase
                     activity [Evidence IEA];
                     GO_process: GO:0009446 - putrescine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidase"
                     /protein_id="HZU51111.1"
                     /translation="MTKLSVAALQLAFCEDTDANIRAVSELVREGAAKGAEVILPPEL
                     FEGPYFCRVEDESLFASAKPAAEHPSVIAMQELAAELKVWIPTSFFELDGPHHYNSLA
                     MIGPDGAIAGIYRKSHIPDGPGYEEKFYFRPGNTGFKVWQGPHRAKLGVGVCWDQWYP
                     ETARAMMLMGADILFYPTAIGTEPHDPDLDTSRLWRRAMIGHSVSNVVPVVAANRIGT
                     EHGQRFYGHSFICDDRGDILAEFGAEETGVLVATLDLAEAKKHRAAFGFFRDRRPELY
                     GRLTEDI"
     gene            complement(1387..2370)
                     /locus_tag="VE968_04475"
     CDS             complement(1387..2370)
                     /locus_tag="VE968_04475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HZU51112.1"
                     /translation="MLQDPRPPLPEWAPHQAVWIGFPSDPELWLADLEPAEQEVAAFA
                     RAVHADGRGEEVWLVAAHEGAAKKAQRLCPFAKVIIEPFGDIWLRDTGPIVVGSGKER
                     RAQGFGFNGWGGKYDLPGDADIGERLARDAGLPFVKAQWVLEGGAIDGDGSGTVITTE
                     ECLLNPNRNTLTRSEIEERLRDCLGFDRIVWLGSGLMNDHTDGHVDNLARYVAPGRVA
                     IPTAAKNDPNEAVYKSAARRLGEAHLDIVTLPSPGRVTNEDGDIIPASFMNFYIGNAA
                     VVVPNYGVANDRAAVDVLQALFPERVVTGLRANHILTGGGSFHCISQQVPA"
     gene            complement(2440..2631)
                     /locus_tag="VE968_04480"
     CDS             complement(2440..2631)
                     /locus_tag="VE968_04480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51113.1"
                     /translation="MMKMKHRLNSVALVEPRHSTATAFFQDAVSAHAPGTAMTIAASG
                     AANARSAVRNIDPLYSAMT"
     gene            2681..>2983
                     /locus_tag="VE968_04485"
     CDS             2681..>2983
                     /locus_tag="VE968_04485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51114.1"
                     /translation="MMSRCLSVAVSALALVAANAAAAQAAQTPQATQVSDPIAAMFGV
                     RESAVGVDLSPSGRLVSYVAPEAGGGSVAFIADVQSGDSKPFLNSGKGPERLRWCHF"
BASE COUNT          570 a          909 c          908 g          596 t
ORIGIN      
        1 tggtggaacg cgccggtgcc ggcgttcggc gatcccgagg cctggctggc gatcgtcggg
       61 ctcgcgccgg gcaagcatgg cgcgaaccgc accgggcgcc cgttcaccgg cgattatgcc
      121 ggcgagctgc tttattcgac cttgttaaaa tatggacttg cggaggggga atatgctgct
      181 tcccaatccg acggtctgcg gctgagcggc gccataatac tcaacgcggt caagtgtctc
      241 cctccggcga acaagcccga gccgcgcgaa attgcgacct gcagcaacta tttcgaggct
      301 tcgctcgccg ccttgccgaa cgtgcgggtg ctggttgcgc tcgggcagat tgcgcatgtc
      361 gcatccgcac gagcgcttgg acttccccct tccgggacca agttcgctca cggcgccgag
      421 catgtggcac ctaccgggcg tatcctcctc tcgagctatc actgttcaag gtacaaccag
      481 aacacgggcc gattgaacgc tggcatgttt gaaagcgtgt tcgagcgagc gctcgcgctc
      541 agatgtcctc ggtgagacgg ccgtaaagtt ccggccttcg atcgcgaaag aaaccgaaag
      601 cggcacgatg tttctttgcc tcggcaaggt cgagcgttgc aacgagaacg cccgtctctt
      661 cggcgccgaa ctccgccagt atatcgcctc gatcatcgca gatgaaactg tgcccataga
      721 accgctgacc atgttcagtt ccgatccggt ttgccgccac cacgggcacg acatttgaaa
      781 cggaatgacc aatcattgca cgccgccaca ggcgcgacgt gtcgagatcg gggtcgtgcg
      841 gttcagtccc gattgccgtc ggatagaaca ggatgtccgc tcccatgagc atcatcgcgc
      901 gggctgtttc gggataccac tgatcccagc agacaccgac gccgagcttt gcacgatgag
      961 ggccttgcca caccttgaag cccgtgttcc cggggcggaa gtagaatttc tcctcatagc
     1021 ccggaccgtc ggggatatgg ctcttgcggt aaatcccggc gatcgcgccg tcggggccga
     1081 tcattgcgag cgaattataa tggtgcgggc catcgagctc gaaaaagctc gtaggaatcc
     1141 agaccttgag ctcggcggcg agttcctgca tcgcaatgac cgagggatgc tcggcggcgg
     1201 gcttcgccga ggcgaagagg ctctcgtctt cgacccggca aaaatagggt ccttcgaaca
     1261 gctcgggggg caaaatcact tccgccccct ttgcagcacc ttcgcgcacg agctcgctaa
     1321 ccgctcggat attggcatcc gtgtcttcgc aaaaggcaag ttggagggca gcgaccgaaa
     1381 gctttgtcat gcgggaacct gttgcgaaat gcagtggaag cttccgcctc cagtcaggat
     1441 gtggttggct cgaaggccag ttacaacgcg ctcgggaaag agagcctgga gcacgtcaac
     1501 cgccgctcga tcgttcgcaa cgccgtagtt cggaaccacg acggcagcat tgccaatgta
     1561 gaagttcatg aagcttgccg ggatgatgtc accatcttcg ttggtgacgc ggccgggaga
     1621 ggggagggta acgatgtcga gatgggcttc gccaaggcga cgcgcagcac tcttgtagac
     1681 cgcttcgttc ggatcgttct ttgccgcggt tggaatggca acgcgtcccg gtgcgacgta
     1741 gcgagcaaga ttatcgacat gcccatcggt atgatcgttc atgaggcccg agccgagcca
     1801 aacgatgcga tcaaagccga ggcaatcgcg caacctttcc tcaatctcgc ttcgtgtcag
     1861 tgtattccgg ttcgggttga ggaggcattc ctccgtcgtg atcaccgtac ccgatccatc
     1921 gccgtcgatg gctccgccct cgagcaccca ctgcgctttc acgaaaggca gccctgcgtc
     1981 cctcgcaagt ctctcgccga tgtcggcatc gcccggcaga tcgtactttc cgccccatcc
     2041 attgaagcca aagccctgcg cacgccgctc cttgccactc ccaacaacga tcggacccgt
     2101 gtctctaagc cagatgtcgc cgaaaggctc gatgatgacc ttggcgaaag gacataatcg
     2161 ctgagccttc tttgccgcgc cttcgtgcgc tgcgaccagc cagacctctt cgccccggcc
     2221 atccgcatgc acggccctcg cgaaggcggc gacctcctgt tcggcgggct cgaggtcggc
     2281 aagccacagc tcgggatcgc ttggaaaccc gatccaaacc gcctgatggg gggcccattc
     2341 tggcagcggt ggtcgcggat cttgcagcat gatcgggcgc taacaggcgg acgcgtcagc
     2401 gccaagtcga ttggcttgcg ctagtttttc aaccgtgcac tatgtcatcg ccgaataaag
     2461 gggatcgatg ttgcgtacgg cagatcttgc attcgccgcg ccactggccg cgatggtcat
     2521 ggcggtgcct ggtgcatgag ccgaaacggc atcttggaag aacgcggtag ccgtcgagtg
     2581 gcggggctcg accagcgcaa cggagttcaa ccgatgcttc atcttcatca tggggaaaat
     2641 gctcgagaat aggatcgggc acttaggggg agttaagcgt atgatgtcca ggtgcctttc
     2701 tgtcgcggtt tccgcgcttg cgctggttgc cgcgaacgcc gccgcagcgc aggcagcgca
     2761 gacgccgcag gcaacgcagg tcagcgatcc gatcgccgca atgttcggtg ttcgcgaaag
     2821 cgcggtcggc gtcgacctgt ccccaagcgg ccggctcgta tcttatgttg cgccggaagc
     2881 cggtggcgga tcggttgctt tcattgccga cgtccagtcg ggagattcca agcctttcct
     2941 caacagtggc aagggtcctg aacggcttcg ctggtgtcat ttc
//
LOCUS       DASRBJ010000157         4368 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_577601,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000157 DASRBJ010000000
VERSION     DASRBJ010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4368)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4368)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4368
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_577601"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..302
                     /locus_tag="VE968_04490"
     CDS             <1..302
                     /locus_tag="VE968_04490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HZU51115.1"
                     /translation="IIRQRIGFDGFLMSDDLGMEALDSDFGARAAGVVAAGCDVALHC
                     SGKMEEMVAVASAVPSMSRKSLDRLERAMAIAAADREPIDFASETAKRDQLLALA"
     gene            413..2035
                     /locus_tag="VE968_04495"
     CDS             413..2035
                     /locus_tag="VE968_04495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S10"
                     /protein_id="HZU51116.1"
                     /translation="MRLLIAASVLALLTAAPAAAQSANSSGDKTKSLDALHSDAMIEQ
                     AKNGYADAPVEERTVQTRHSAAVAGRVLPYTATAGTLTIRNDAGKPKASIFYTAYTLD
                     GAPTGHRPIMFFYNGGPGSASLWLRMGSFGPMRIQTGNPEAIRPAPFNFGPNPDTLLG
                     TTDMVFIDAPGTGYSRPLGDAKGSDFYGVDQDADAFARAIIRYVTKFGRWDSPKFLFG
                     ESYGTTRSGALAYQLQDRGLALNGVVLLSSIMNYGRRQPGLDRDFINYLPSYTTTAWY
                     HHKMANPPATVEQAAAEGRAFAQGPYAAALEKGQTISPQERDAVAQQMSALTGLSPEF
                     IEDANLRVDLSRFRKELLRRERETIGRYDSRYIGVDPDAAGESPDYDASDTAIGGAFI
                     GTLNTYLARDLNYQTNMAYRPSASGEEGFKWDWNHKAPGTRFSLQQPNTALDLAAAMR
                     TNPYLKVLSLNGYYDMATPFFGTEYDLDHMMLEPAQARNLQFRYYPSGHMVYLNPDAL
                     HLMRLDVERFINEAVGQAQAGAPVAPAPRRRH"
     gene            2099..2854
                     /locus_tag="VE968_04500"
     CDS             2099..2854
                     /locus_tag="VE968_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ScpA family protein"
                     /protein_id="HZU51117.1"
                     /translation="MDEDFEEPPVRQSDELTLALDGWEGPLDLLLNLARAQKVDLSQI
                     SILQLVEQYLAYLARARALKLEIAADYLVMAAWLAYLKSCLLLPKDPEQDPSPEEVAL
                     RLQLRLQRLDAMREAGARLLGRDRIGRDVFTRGAPEGLRLVRKAAWHVRDIDLFRAYG
                     AVRARTAPAFHVVHARAVMTLDEAIERVGKMIGMALDWTFLEAFLPSSQDPQFRRSCL
                     ASSFLAALELARRGRVDIAQDEAFAPIRLKKAA"
     gene            2851..3420
                     /gene="scpB"
                     /locus_tag="VE968_04505"
     CDS             2851..3420
                     /gene="scpB"
                     /locus_tag="VE968_04505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HZU51118.1"
                     /translation="MMDELLRAIEATLFASAEPLSRDEIVEQLGREDIDEALPVLVSH
                     YEGRGIELVERGGRWHFQTAPDLAHLLRRTREEPRRLSRAATETLAIIAYHEPVSRAE
                     IEAIRGVQISKGTLDVLMDAGWVRPAGRREGPGRPLLYATTQAFLSHFGLGSRRDLPG
                     IDDLKAAGLLDPLDESLFQLQLESEEQGD"
     gene            3445..3738
                     /locus_tag="VE968_04510"
     CDS             3445..3738
                     /locus_tag="VE968_04510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003047789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HZU51119.1"
                     /translation="MGGLSIWHIIIIAIFVLLLFGGNRFSSMMGDVAKGLKSFKQGMA
                     DDEEEKYRRYEEQRRNDPPRQLGRDEGPRDPIDVTPRPSDPVAPPPPRNDEPR"
     gene            3755..4147
                     /locus_tag="VE968_04515"
     CDS             3755..4147
                     /locus_tag="VE968_04515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatB"
                     /protein_id="HZU51120.1"
                     /translation="MFGFDSAEIAIIAVLALIFIGPKELPRVMRTVGYWVGRVRGMAR
                     HFTSGIEDMIREAELEEMEKKWREENERIMRLHPANADYPEPGQADQMPPLEKGPDPI
                     SAQAPEPMLPFDEKQPGDELPADKRPLP"
     gene            4144..>4368
                     /locus_tag="VE968_04520"
     CDS             4144..>4368
                     /locus_tag="VE968_04520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HZU51121.1"
                     /translation="MKDIDDTKQPLLEHLIELRRRLLWCLATLVVAFFVCFSFAHQIF
                     AVLVQPLLHAGQGKLIYTDVFEAFFTQVKVA"
BASE COUNT          855 a         1316 c         1321 g          876 t
ORIGIN      
        1 acatcattcg tcaacggatc gggtttgacg gattcctgat gagcgatgac cttggaatgg
       61 aagcgctgga cagcgatttt ggggctagag ctgcgggcgt cgtcgccgcc ggctgcgatg
      121 tcgcgctgca ctgctccggc aagatggagg aaatggttgc ggtcgcgtcc gccgttccat
      181 cgatgagccg gaaatcgctt gatcggctcg agcgtgccat ggcaattgct gcggctgaca
      241 gggaaccgat tgattttgct tcggaaacag cgaagcgaga ccagcttcta gcgcttgcct
      301 gagcatccgt tcgtcgatcg gagatgtctg ttcatcgagt ggattgcgcc ttgcaactaa
      361 atcacgccaa ggtcgcgcct gtccttctac cctatctaaa gagaagctcc tgatgcgctt
      421 attgatcgct gcgtccgtac ttgccttgct taccgccgcc ccggctgccg cccagtcggc
      481 aaattcatct ggggacaaga ccaagagtct tgatgcgctc cattcagacg caatgatcga
      541 gcaagcgaag aatggctatg ccgatgcgcc agtcgaggag cggacggtgc agacgcggca
      601 tagcgctgcc gtagctggtc gcgttcttcc gtacacggcg acggccggaa cgctgacgat
      661 ccgcaatgat gccggtaagc cgaaggcgag cattttctat accgcctata cgctcgacgg
      721 cgcacccacc gggcatcggc cgattatgtt cttctacaat ggcgggccgg ggtcagcttc
      781 gctgtggctg cgcatgggct ccttcggccc gatgagaatc caaacgggca acccagaagc
      841 aatccgaccg gcaccgttca actttggtcc caatccggac acgctcctcg gcaccacgga
      901 catggtgttc atcgacgcgc ccggaaccgg ctattcgcgc ccgcttggcg acgctaaggg
      961 aagcgacttt tacggcgttg accaggatgc cgacgccttt gctcgtgcga tcattcgcta
     1021 cgtcacgaaa tttggtcgct gggacagccc caagttcctg ttcggtgaga gctatggcac
     1081 gacccgttcg ggcgcacttg cctaccagct gcaggaccgc ggtcttgccc tgaacggagt
     1141 cgtgcttctc tcgtcgatca tgaactatgg tcgtcgccag ccgggactcg accgcgactt
     1201 catcaactat ttgccaagct acacgacgac ggcctggtac catcacaaga tggcgaatcc
     1261 gcccgcgacg gttgagcagg cagcagccga agggcgggca ttcgcccaag ggccttatgc
     1321 cgctgcactg gagaagggcc agacgatcag cccgcaggag cgtgatgcag tagcacagca
     1381 aatgagcgca ctgactggcc tctcgcccga gttcatcgag gatgcgaacc tgcgcgttga
     1441 tctttcccgt tttcgcaagg aactcctgcg ccgggagcgt gagacgatcg gccgctacga
     1501 ctcgcgctac atcggcgtcg accctgatgc ggcgggcgaa agcccggatt atgatgcatc
     1561 cgacactgca atcggtggtg cgttcattgg gactctgaac acctatctgg ctcgcgacct
     1621 caactaccag accaacatgg cctaccggcc gagcgcgagt ggcgaagagg ggttcaaatg
     1681 ggattggaac cacaaggctc cagggacgcg tttctccctg cagcagccca acaccgcgct
     1741 tgatctcgcg gctgctatgc ggacgaaccc ctacctcaag gtcctttcgc tgaacggcta
     1801 ttatgacatg gcgacaccgt tcttcgggac cgagtacgac ctcgaccata tgatgcttga
     1861 gccagcacaa gcgcgtaacc tccagtttcg ctattatcct tctggtcaca tggtctatct
     1921 caaccccgac gctctccatt tgatgaggct cgacgtcgag cgcttcatca acgaggccgt
     1981 gggacaagca caggcgggtg ctccagtggc gccggcaccg cgacggcggc actgatttat
     2041 ccccagcata atgtggccct gccttcgcag ggccactagt tcttgttatt atgcccttgt
     2101 ggacgaggat tttgaggaac cgccggtccg ccagtcggac gagctgacat tggccctgga
     2161 cggttgggaa gggccgctgg atctcctgct caatctcgcg cgcgcccaga aggtcgacct
     2221 ttcgcaaatt tcgatccttc agctcgtcga gcaatatctc gcttatctcg ctcgcgcgcg
     2281 cgcgcttaag ctcgaaattg cggctgacta tctcgtgatg gcggcatggc tcgcttactt
     2341 gaagtcgtgt ctgctccttc ccaaggaccc ggaacaggat ccaagtcccg aggaggtcgc
     2401 attgaggctg cagctgcgcc tccagcggct cgacgcaatg cgcgaagcgg gggcgcggtt
     2461 gctcgggcgc gaccgaattg gccgggatgt ctttacccgc ggcgcgcccg aagggcttcg
     2521 cctggtccgc aaggccgcct ggcacgtgcg cgatatcgac ctatttcggg cctatggtgc
     2581 tgtgagggct cgtacggcgc cagcattcca cgtcgttcac gcgcgcgccg tcatgactct
     2641 tgacgaagct atcgagcgcg tcgggaaaat gattggaatg gcgctcgatt ggactttcct
     2701 cgaggcattt ctgccgagca gccaggatcc tcagtttcgc cgatcctgcc tcgcctcgag
     2761 ctttctcgct gcgcttgaac ttgcgcggcg cggtcgagtg gacatcgccc aggacgaggc
     2821 gttcgcgccg atccggctca agaaagccgc atgatggacg aattgctccg agccatcgaa
     2881 gcgacgcttt ttgcatcggc agagccgctc agccgtgacg agatcgttga gcaacttggt
     2941 agagaagaca tagacgaggc actgccggta ttggtctcgc actacgaagg acgtggcatt
     3001 gaactggtcg agcggggcgg ccgctggcac tttcaaaccg cgcccgatct tgcccatctg
     3061 ttgaggcgga cacgcgagga accgcgtcgc ctgtcgcggg cagcgaccga aacgctcgcc
     3121 atcattgcct atcacgagcc agtcagcaga gccgagatcg aagcgatccg aggcgtccaa
     3181 atctcgaaag gcacgctcga cgtgctgatg gacgccggct gggtgcggcc ggccgggcgc
     3241 agggagggcc ccggccggcc gttgctctat gcgacgacgc aggccttcct gtctcatttt
     3301 ggtctcggct ctcggcggga cctgccgggc atcgacgacc tgaaggctgc cgggcttctc
     3361 gatccgctgg acgaatcgct attccagctt cagctggaaa gcgaagagca aggcgactag
     3421 atagccgcct caaaggagtt tccgatgggc ggacttagta tttggcacat catcatcatc
     3481 gcgattttcg tgctgctgtt gttcggcggg aatcgattca gctcgatgat gggcgatgtc
     3541 gccaaaggcc tcaaaagctt caagcaggga atggcagacg acgaagagga gaagtaccga
     3601 cgctatgaag agcagcgccg caacgatcct ccgcggcagc ttggccgcga cgagggaccg
     3661 cgcgacccaa tcgatgttac accgcgccca agcgatccgg tggctccgcc gccaccgcgc
     3721 aacgacgagc cgcgctaagt ccacctgacc tgacatgttc ggatttgatt ctgccgagat
     3781 cgcgatcatc gcggttctcg cgttgatttt tatcggccct aaggagcttc caagggtgat
     3841 gcgcacggtt ggctattggg tcggccgagt gcgcggcatg gcgcgccatt tcacctcggg
     3901 catcgaggac atgatccgcg aggcggagct tgaagagatg gagaagaagt ggcgcgaaga
     3961 gaatgagcgc atcatgcgcc ttcatccggc aaatgccgac tatcccgagc ctggacaagc
     4021 tgatcagatg ccaccgctcg aaaaagggcc agatccgatt agcgcgcagg cacctgaacc
     4081 aatgctcccg ttcgacgaga aacagccggg agacgagctc ccggcagata agcggccgtt
     4141 gccttgaagg acattgacga caccaagcag ccgctactcg agcatcttat cgagctgagg
     4201 cggcgccttc tctggtgcct tgcaacgctg gtcgttgcct ttttcgtgtg cttctcgttc
     4261 gcgcatcaga tctttgccgt actggtccaa ccgcttcttc acgcggggca gggaaagctc
     4321 atctacacgg atgtcttcga ggcattcttc acgcaggtga aggttgcg
//
LOCUS       DASRBJ010000158         2563 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_371188,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000158 DASRBJ010000000
VERSION     DASRBJ010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371188"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(110..373)
                     /locus_tag="VE968_04525"
     CDS             complement(110..373)
                     /locus_tag="VE968_04525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010411303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DksA/TraR family C4-type zinc finger protein"
                     /protein_id="HZU51122.1"
                     /translation="MAGGWTRDGAVQDQIDDTVKDAVLRARALTPSGDSLAECEECGE
                     PIPKRRREALAGVRTCIHCQAERDKRVVHSTINRRGSKDSQLR"
     gene            complement(410..1795)
                     /locus_tag="VE968_04530"
     CDS             complement(410..1795)
                     /locus_tag="VE968_04530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006832114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family metallopeptidase"
                     /protein_id="HZU51123.1"
                     /translation="MRRLIAVSSLALVAASPPSATDAKLKALIAPVSEGQLRHTIATL
                     VSFGTRHTLSSQTDPKRGIGAALEWTRGEFGRYSAACGNCLTIVDPSEVVTGTRIPTP
                     TRVRDMVAIQRGTERPNDVVIIQGHIDSRVSDVMNATSDAPGANDDGSGTAAVLEAAR
                     VLSKHKFPGTIVYAALSGEEQGLYGGKVLADYAKANGWNVVTVLNNDIIGNSCSSDGM
                     CDAAHARVLSEGPRSQDQVELMAATHSLGGENDAPSRNISRYLDRLADRLNIGLDVRQ
                     IWRTDRVQRGGDHIPFLQLGYPAARITVAIENYNWQHQDLRTENGVRYGDTIDHVDFP
                     YLAKMTKLNIAALAEIASAPPPPEPKVEGGVSTDTTVTWLPVPGATSYRVHWRRTDAN
                     QWEHVMNADGTCTADKLGVCRASVVLRHVRVDDWIFGVSSVGKGGFEGPVASAVPGGG
                     FHPYIPSPKKP"
     gene            1896..>2563
                     /locus_tag="VE968_04535"
     CDS             1896..>2563
                     /locus_tag="VE968_04535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HZU51124.1"
                     /translation="MLRSVDHFIGGSSFASGERQADVFDPNQGQVQANVRLGSGADLQ
                     RAVESAKAAQPAWAATNPQRRARVMFKFRELVEKNMDALAHLLSSEHGKVIADARGDV
                     QRGLEVIEYACGIPQALKGEYTVGAGPGIDVYSMRQPLGIGAGITPFNFPAMIPMWMF
                     GMAIACGNAFILKPSERDPSVPNRLAELMKEAGLPDGILNVVHGDKEMVDAILDHPDI
                     AGIS"
BASE COUNT          480 a          777 c          776 g          530 t
ORIGIN      
        1 atctcgcgct tgccggccgg ctggtcggaa gacgcaatga aatcgaggat ctgctttcgg
       61 ctcgggaggc cagcggagcg cttcctttgc atgactccag ctaaacgcct tacctcagct
      121 ggctatcttt gctgccgcgc cggtttatcg tcgagtgtac aacgcgcttg tcgcgttctg
      181 cttggcagtg aatgcacgtg cgcacaccag cgagtgcttc gcggcgcctc ttggggatcg
      241 gctcgccgca ctcttcgcac tcggcgagac tgtccccgct tggagtgagc gcgcgagcac
      301 gaagcacggc atccttaacg gtgtcgtcga tctgatcctg aaccgcgccg tcgcgcgtcc
      361 aaccgccagc catggaatct cctttccaag ccacaacgcg tcaattgcgt cagggcttct
      421 ttggcgaagg tatataggga tggaatccac cgccggggac cgccgaagcg accggccctt
      481 cgaatccgcc cttgccgacg gaagagaccc cgaagatcca gtcgtcgacg cgcacgtgcc
      541 gcaggacgac cgacgcccgg cacacgccca acttgtcggc cgtgcaggtc ccgtcggcat
      601 tcattacgtg ctcccactgg ttggcatccg ttcggcgcca atgaactcgg tacgacgtgg
      661 caccgggcac cggcagccaa gtgacagtcg tgtcggtgct gacgccgcct tcgacctttg
      721 gctcgggcgg aggcggcgcg ctcgcgattt ctgcgagcgc tgcaatgttc agtttggtca
      781 tcttcgcgag gtaggggaaa tcgacatggt cgatcgtgtc gccatagcga accccgttct
      841 cggtcctgag atcctggtgc tgccagttat aattttcgat tgctacggtg atccgggctg
      901 ccgggtagcc caactggaga aagggaatgt gatccccgcc gcgctgcacg cggtcggtgc
      961 gccagatctg tcgaacgtca aggccgatgt tcagccgatc ggcgaggcgg tcgaggtagc
     1021 gcgagatgtt gcgggaaggc gcatcgtttt cgccgccgag actatgtgtt gcagccatga
     1081 gctcgacttg atcctgcgag cgcggccctt ccgatagcac acgagcgtgc gcggcgtcgc
     1141 acataccgtc cgacgagcag ctattaccga tgatgtcatt gttgaggaca gtcacgacgt
     1201 tccagccgtt cgcctttgca taatcggcaa gaacctttcc gccgtagagt ccctgctctt
     1261 cgccagagag ggcggcatag acgatggttc caggaaactt gtgcttggaa agcacccgag
     1321 ccgcttcgag caccgccgcc gttcctgacc cgtcgtcatt ggctccgggc gcgtcggagg
     1381 ttgcattcat cacatcgctg actcgactat cgatatgtcc ctggatgata acgacgtcgt
     1441 tgggacgctc ggttccgcgc tggatcgcaa ccatgtcgcg cacgcgcgtt ggcgttggaa
     1501 tgcgagttcc agtcacgacc tcggacgggt cgactattgt caagcaattg ccgcaagcgg
     1561 cggaatatcg cccgaactca ccgcgggtcc attcgagtgc cgctccgatg ccccgcttgg
     1621 gatcggtttg cgacgaaaga gtgtgcctcg tgccaaagct caccagtgtc gcaatcgtat
     1681 gacgcagctg tccctcactg acaggagcga ttagcgcctt gagcttcgcg tcggtcgccg
     1741 agggcgggga agcggcaacg agggcaagac tgctgacagc gatcaatcta cgcatctgat
     1801 tctccccact tctcatgctt gggcaactgg catttgctcg cccgccggtc taggggatcc
     1861 gtcgacccag acatcatcac accaggacgc gtaacatgct tcgcagcgtt gatcatttta
     1921 tcggtggttc aagctttgct tcaggcgagc ggcaggccga tgtcttcgat ccgaatcagg
     1981 gccaggttca ggcgaacgtt cgtttaggca gcggtgccga tctccagagg gcagtagaat
     2041 cggcaaaggc cgcgcagcct gcctgggcgg cgaccaatcc gcagcggcgt gcacgcgtga
     2101 tgttcaagtt ccgagagctc gttgaaaaga acatggacgc gcttgcccac ctcttgagct
     2161 cggagcacgg caaggtcatc gccgacgccc gtggcgacgt tcagcgcggc cttgaagtca
     2221 ttgaatatgc ttgcggaatc ccccaggcgc taaagggcga atatacggtt ggcgcagggc
     2281 ctgggattga cgtttattcg atgcggcagc cgctcggcat cggtgccgga attaccccgt
     2341 tcaattttcc agccatgatc ccgatgtgga tgttcggaat ggcaattgcc tgtggcaacg
     2401 cgttcatcct caaaccctcc gagcgtgatc catcagtccc gaaccgtctc gccgagctga
     2461 tgaaggaagc aggccttccc gacgggattc tcaatgtcgt gcatggcgac aaggaaatgg
     2521 tcgatgcgat cctcgatcat cccgacatcg ccggaataag ctt
//
LOCUS       DASRBJ010000159         2706 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_223165,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000159 DASRBJ010000000
VERSION     DASRBJ010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2706)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2706)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2706
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223165"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..266)
                     /locus_tag="VE968_04540"
     CDS             complement(<1..266)
                     /locus_tag="VE968_04540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HZU51125.1"
                     /translation="MLRQVIPSAASDALAVQAVELVKDFGDTRAVDGVNLTVPRGSIY
                     GLLGPNGAGKTTTLRMLIGIIDPSSGARRVLGRERPLEAAAEIG"
     gene            311..1387
                     /gene="queG"
                     /locus_tag="VE968_04545"
     CDS             311..1387
                     /gene="queG"
                     /locus_tag="VE968_04545"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0052693 - epoxyqueuosine reductase
                     activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HZU51126.1"
                     /translation="MDKAEKLEDAIRAEAERLGFAVCGFARPDAADEAGLNLTRWLAA
                     GHHGTMGWMEERSHDRVSALSLWPEAKSAIALGMSYSPASDPLALSRHATHGRISVYA
                     QGGDYHKTVKKALKALARFIVAAAPSELKVFVDTAPVMEKPLAQAAGIGWQGKHTNLV
                     SRTHGSWLFLGVILTSLELIPDPAVGEGQHCGSCTRCIDSCPTQAFIGAHRIDARRCI
                     SYLTIEHDGPIPVELRAAIGNRIYGCDDCLAVCPWNRFADAAATNRAFLPRAELAAPR
                     LADLLSIDDTAFRQIFAGSPIKRIGWARMIRNCLIAAGNSGDLQLSGAILRHVEDRDP
                     VISEAARWALAQIDRLRSANTQAA"
     gene            complement(1345..1701)
                     /locus_tag="VE968_04550"
     CDS             complement(1345..1701)
                     /locus_tag="VE968_04550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51127.1"
                     /translation="MRRILPLSFALALASCATAPQQPTVAPPAPEVTPQDSSTLVGLT
                     AQELFGRFGAPALQIREGNSLKLQFRGPRCVMDTYLYPSGASGTLKVTHVDTRLPSGG
                     DTDQAACVFALRNRSI"
     gene            1801..>2706
                     /locus_tag="VE968_04555"
     CDS             1801..>2706
                     /locus_tag="VE968_04555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine kinase"
                     /protein_id="HZU51128.1"
                     /translation="MPDPRLDVLCIGNAIVDVIANASDEFLAKEGLVKGSMRLVDAEE
                     AERLYAHMGPAHQVSGGSAGNTAAGIAALGGRAGFIGQVAPDPLGKFYRHDLTSTGVE
                     FITPSLDVGEPTARSMILVTPDGHRTMNTFLGAAQHLPKHALDEEQIRDSAILYLEGY
                     LWDPETPRYAMVRAIEVAREAGRKVAFTLSDTFCVDRHRAGFNELLENGRVDILFANQ
                     AEIEALAGIPHLESALMAVAGKVHTLVVTRSEEGALAMTGGERTDVPAAPISELVDTT
                     GAGDLFAAGFLFGTARGRSVTDSLRL"
BASE COUNT          545 a          821 c          850 g          490 t
ORIGIN      
        1 tacccgatct cggccgccgc ctcgagtggc cgctcgcggc cgagtacacg acgcgcgccg
       61 cttgacggat caataatccc gatgagcatc cgaagtgtcg tggtcttgcc ggcaccgttc
      121 ggaccaagca gtccgtagat cgaaccgcgc gggacagtga gattaactcc atcgacggct
      181 cgcgtgtcgc caaaatcctt tacaagctcg accgcctgta cggcgagcgc atcggacgca
      241 gcggagggaa taacctgtcg aagcactgaa attcctacgt tagttgcgcg ccggcgtgta
      301 gaggcaccgc gtggataagg cggaaaagct tgaggatgca ataagggcag aggccgagcg
      361 cctcggcttt gccgtttgcg gtttcgcgcg cccggatgcc gcggacgagg cggggctcaa
      421 ccttacccgc tggcttgccg ctggtcatca tggaacaatg gggtggatgg aagagcgttc
      481 ccacgatcgc gtttccgcct tgtcgctgtg gccggaggcg aagtcagcaa ttgcgctcgg
      541 aatgagctat tcgcccgctt cagacccact cgcgctgtca cgccacgcaa cgcacggacg
      601 aatctcggtc tatgcgcagg gcggggacta tcacaagacc gtcaagaagg cgctgaaggc
      661 acttgcgcgt ttcatcgttg cggccgctcc gtccgaactg aaggtgtttg tcgacaccgc
      721 tccggtgatg gagaaaccgc tggcgcaagc tgccggaatt ggctggcaag gcaagcacac
      781 caatctcgtc agccgaaccc acggaagttg gctgtttctt ggtgtgatcc tgaccagcct
      841 cgagctgata ccggaccctg cggtaggcga aggacagcat tgcggatcat gcacccgctg
      901 catcgactcg tgcccgacgc aagcgttcat cggcgctcac cggatcgatg cgcgaaggtg
      961 catttcctat ctgacgatcg agcatgatgg cccgattcca gtggaactgc gcgcggcgat
     1021 cgggaaccgc atctacgggt gcgacgactg ccttgcggtt tgcccatgga accggttcgc
     1081 cgatgcagca gcaacaaacc gcgcgttcct tccgcgcgcc gaacttgcgg caccccgcct
     1141 ggccgacctc ctttcgattg atgatacggc cttccggcaa atcttcgccg gatctcctat
     1201 caagcggatt ggctgggcta gaatgatccg caactgcctc attgccgcgg gcaacagcgg
     1261 cgatttgcaa ctgtcgggtg caatcctcag gcacgtcgag gatcgcgacc ccgtcatctc
     1321 ggaagcggcg cgctgggcgc ttgctcagat cgaccggttg cgaagcgcga acacgcaggc
     1381 agcctgatcg gtatcgccac ccgagggaag gcgcgtatcc acatgagtga ccttaagcgt
     1441 tccggatgca ccggacgggt agagataggt gtccatcaca catcgtggac ctcgaaactg
     1501 cagcttgagg ctgttgccct cgcggatctg cagagcaggc gctccaaatc gaccgaaaag
     1561 ctcctgcgcc gttaggccga cgagagtgct cgaatcctgc ggcgtcactt cgggagccgg
     1621 cggcgcgact gttggttgct gcggtgcagt ggcgcagctc gcaagcgcga gcgcgaacga
     1681 aagaggtaag atgcggcgca tgagtagacg atggcccggg accggcgccg acgcaatgtt
     1741 gcaggcgagc aaacgtgccg ctaggcgccg cagcttgccc gacaaatgga gataaactgg
     1801 atgcccgacc cgcgcttaga cgtcctgtgc attggcaacg ccatcgtcga cgtcattgcc
     1861 aatgcaagcg acgagttcct ggcgaaggag ggcctcgtaa agggctcgat gcggctggtc
     1921 gatgcggagg aagccgaacg gctttacgcg cacatgggac cggcacacca agtcagcgga
     1981 gggtcggccg ggaacacggc agcggggatt gctgcgctcg gtggacgtgc cggcttcatt
     2041 ggccaagttg cgcccgatcc actcggcaaa ttctataggc acgacctcac ctcgacaggc
     2101 gttgaattca tcactccgtc cttggacgtg ggcgagccga ccgcacgctc aatgatcctg
     2161 gtgacacccg acgggcaccg cacgatgaac acctttctag gcgcggctca gcacctgccc
     2221 aagcacgcac tcgatgaaga acagatccgc gactcggcga tactctatct ggaaggctat
     2281 ctgtgggatc cggaaacgcc gcgctatgca atggtgcgag cgatagaagt tgctcgcgaa
     2341 gccggaagaa aggtcgcctt cactctctcc gacaccttct gcgtcgaccg gcatcgcgcc
     2401 ggcttcaacg agctgctcga aaatggccga gtcgacattc ttttcgcgaa ccaggctgaa
     2461 atagaggcac ttgcaggcat tcctcatctg gaaagcgcac tgatggccgt tgccgggaag
     2521 gtccataccc tcgtcgtcac gcgaagcgaa gaaggcgcac ttgcgatgac aggcggtgag
     2581 cgcaccgatg tacccgcggc gccgatcagc gagctggtgg atactacggg tgccggggat
     2641 ctcttcgcag caggtttcct gtttggcacg gcacgtggcc gaagtgtcac ggattcgctt
     2701 cgcctc
//
LOCUS       DASRBJ010000160         5827 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_321138,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000160 DASRBJ010000000
VERSION     DASRBJ010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5827
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321138"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..264)
                     /locus_tag="VE968_04560"
     CDS             complement(<1..264)
                     /locus_tag="VE968_04560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51129.1"
                     /translation="MLTRVYLAVSAAALAMAAPANAGPGDHGGGHGGGGPHGGGGPPA
                     ARAGGGGGAPRAAAAAPAFNGGGRGHGGGGPAGRPMMSFGAGPR"
     gene            complement(386..1648)
                     /locus_tag="VE968_04565"
     CDS             complement(386..1648)
                     /locus_tag="VE968_04565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZU51130.1"
                     /translation="MISTSNTSRQRASFVLTLLLLAYIFNYLDRQILGILAGPIIADL
                     GLRDTDFGILTGPPFAVLYSVLGIPFAFVADRTSRSRVIAGALAFWSLITGLCGTASS
                     FWQLFACRMGVGIGEAGGVAPSYALLADYFEPQRRARALAIFSLGVPIGLGFGTLIGA
                     YIAHAISWRAAFFVMAVAGLLLAPVLLIFVRDPARQALELRPAPIRQVFPLLARKPAF
                     WLLAFAASSSSLCGYGLATWTPSVLERSFHMGLIARGQFFASVVVIGGCIGVFSGGWL
                     ADRLGALDRAWYARLPAIAWIITAPTFAMGLMAPNLWAAWVLLLIPNALNILWLGPVI
                     TAVQHLVPREMRATASASFLLINNLIGLGVGPPLIGRLSDALKHSYGADALRYAAVSC
                     TSFYILAALLMLLSAPGLRAAWLDDRNS"
     gene            complement(1645..2826)
                     /locus_tag="VE968_04570"
     CDS             complement(1645..2826)
                     /locus_tag="VE968_04570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013832917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class V aminotransferase"
                     /protein_id="HZU51131.1"
                     /translation="MSFKKLFSRSLAANPDRLHFAAHSHHLWPDASYSAQVEAWNDAA
                     ELADQKWDKVMAELWPRAQREVAAELATGSPDAIVFAPNTHDLLVRLFTAAPRTGRAR
                     VLTSDGEFHSARRQLARWADAGDASVEQIPVEPFDTFSSRFLEAANRREHDFIFVSQV
                     MFGSGHIFDQIDELAALARPEGPWVVIDGYHAFMAIASPLGNEGDTNAGRRIGEGAFY
                     LGGGYKYAMAGEGCAFMHAPPNFGSRPWITGWFAEFEDISLPPNSIGFAKDASRFLGA
                     TFDPSGLYRFVAVRCMLEQAGLSTRLISDHTRRLQQQFLGLVDQTPLASAELLNPIAD
                     GPHARFLAYRTERAEALYAALKLQNCITDVRSDVLRIGFGLYHDEQDVELLSSLLRGL
                     S"
     gene            complement(2823..3590)
                     /locus_tag="VE968_04575"
     CDS             complement(2823..3590)
                     /locus_tag="VE968_04575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017669631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 2,3-dioxygenase"
                     /protein_id="HZU51132.1"
                     /translation="MTATPAGLSYADYLKLDRLLSAQQPLSDLHDEMLFIVIHQTKEL
                     WMKEMLHELDLAIRLVASASFAQAYKAMARISRIQAVMTLSWDVLSTLTPVDYLKFRH
                     VLGTSSGFQSEQFRELEYRLGLKDSTYLDHYPEGSRERLRLQSAFDEPSLRDCAISAL
                     ERSGFDVGDKSVGALAAAWLEVYRDAEQWFELYELAEKLVDIDDALAAWRHKHVLTVE
                     RIIGQKTGTGGSAAASYLRSTLDKRLFPELWALRTDL"
     gene            complement(3642..4022)
                     /locus_tag="VE968_04580"
     CDS             complement(3642..4022)
                     /locus_tag="VE968_04580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HZU51133.1"
                     /translation="MTLDPQLVSAIQPGVDNKDSVEKALGHPTFVGQFTPNEWYYVSR
                     DVNAVAFRNPKVTRETVLTVRFDQKGNVASIQRTGKELVMNVSPAHRQTETLGKKRSF
                     FEELFGNIGSVGTGLPGQGGGPQQ"
     gene            4247..4759
                     /locus_tag="VE968_04585"
     CDS             4247..4759
                     /locus_tag="VE968_04585"
                     /inference="COORDINATES: protein motif:HMM:NF015914.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome C chaperone family protein"
                     /protein_id="HZU51134.1"
                     /translation="MLRFLFRGLTTENERGRPLFEAATALAREPHWYVEGAVQDTLDG
                     RFAVLSTIIALIMTRLEREGHRGDLVSVALTERFIEVMESEHRELGLGDPTLGKTVRK
                     LVAILARRTQLWRKTDSHEEGWNEATHESLYRTTPSSAALRHSADALARIEKNLAGAT
                     LDQLEQGQIR"
     gene            4756..5283
                     /locus_tag="VE968_04590"
     CDS             4756..5283
                     /locus_tag="VE968_04590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HZU51135.1"
                     /translation="MKDPFAHQLRLDQIRDGERLDLIADEAERKTIGKRLALLSLDRL
                     ECHVTLAKTGDAVRAGGRLLAAVGQSCVVTGEPVSAHVDEHFEILFMPEPHNPHSEEE
                     IELDEKDCDIVFHDGATIDLGSAIADTLALSLDPYPRSAAADAALKEAGVLTEEQASP
                     FAMLARLKRNDADQS"
     gene            complement(5410..>5827)
                     /gene="ssb"
                     /locus_tag="VE968_04595"
     CDS             complement(5410..>5827)
                     /gene="ssb"
                     /locus_tag="VE968_04595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HZU51136.1"
                     /translation="NGGEVVNIRIATSEQWKDRDGNRQERTEWHNVVIFNENLGRVAK
                     NYLRKGSKVYVEGQLQTRKWTDQSGNDRYTTEIVLQRFRGELVLLDSREGASAGRSAF
                     SGEDYDDFGGNAPSRSPQARPQPAAFDTDLDDDVPF"
BASE COUNT         1321 a         1736 c         1714 g         1056 t
ORIGIN      
        1 gcgcgggccg gcgccaaaac tcatcattgg ccgtcccgca ggaccaccgc ctccatgacc
       61 tcgacctccg ccattgaatg ctggtgccgc ggcagcggca cgtggggcgc cgccaccacc
      121 accggcgcga gcagcaggcg gcccaccgcc accatgcgga ccaccgccgc cgtgtccacc
      181 gccatgatcc cctgggccgg catttgcggg tgcggccatc gccagagcgg ctgcgctcac
      241 agcaagatac accctggtca acatggaaac tctcctttcg aacgggacaa cggcccgtcc
      301 gctcgaccgt tccaacctct aaacggatgg aacttgcagg ctagcgcact tgcctgaaca
      361 ggaaattgct atgttgttca gttacttagg agttcctgtc gtcaagccag gcagcccgga
      421 ggccaggcgc ggaaagaagc atcagcagcg ctgcaagaat gtagaagctc gtgcaggaca
      481 cggccgcata acgcagggcg tcagcaccgt agctgtgctt cagcgcatcc gagaggcggc
      541 caatgagtgg tggtccgact cccaacccga taaggttgtt gatcaggagg aagctcgccg
      601 acgcagtcgc acgcatctca cgcggcacaa gatgctggac cgccgtgatg accgggccaa
      661 gccagaggat gttgagagca tttggtatca ggaggagcac ccacgcagcc cagaggttgg
      721 gcgccattaa gcccattgcg aacgtcggcg cagtgatgat ccaggcaatt gccggaagcc
      781 tcgcatacca ggctcgatcc aaggcaccca gccgatccgc gagccagcca ccgctaaata
      841 cgccaataca gcctccgata accacaaccg aggcaaagaa ctggccgcgc gcaatcaagc
      901 ccatgtggaa gctgcgctcg agtacggacg gagtccacgt cgcgagccca taaccgcaaa
      961 gagagcttga cgatgcagcg aacgcgagga gccaaaacgc gggctttcgg gcgagcagcg
     1021 gaaacacttg ccgaatcggg gcaggcctaa gttcgagcgc ttgtcgcgcg ggatctcgga
     1081 cgaagatcag cagaactggc gcaaggagca gtcctgcgac ggccatgacg aagaatgccg
     1141 cccgccagct gatcgcgtgg gcgatatacg cgcctatcag cgttccaaaa cccagaccga
     1201 ttggcacgcc gagcgagaaa atggccagag cccgggcacg acgctgcggc tcgaaataat
     1261 cggcaagcaa ggcgtaggaa ggcgcgacgc caccggcttc tccgataccg acgcccattc
     1321 gacacgcaaa cagctgccaa aaagaagaag ctgttccgca caatccggta atcaggctcc
     1381 agaaagccag agcaccggcg atcacgcggc tcctgctggt ccgatccgca acaaaggcga
     1441 aaggtatgcc aagaaccgaa taaaggactg cgaagggtgg gcccgtcagg atgccgaaat
     1501 cggtgtcccg gagacctaga tcggcaatga tcggacctgc gaggatgccg agaatctgcc
     1561 gatccagata gttgaatatg taagcaagaa gcaaaagggt gagaacgaac gacgcgcgct
     1621 gtcgtgaagt attggaggtg ctgatcacga aagtcctctc aacaggctcg acaggagttc
     1681 gacgtcttgc tcgtcgtggt acaggccaaa accgatccga agcacatcgc tccgaacgtc
     1741 ggtaatgcaa ttttgaagct tcagcgcggc gtacaatgcc tcggcgcgct cggttcgata
     1801 agcaaggaag cgcgcatgcg gcccatcagc aattgggttc aacagttccg cgctggccaa
     1861 cggtgtttgg tcaacgagcc caaggaactg ttgctgcagg cgccgcgtgt gatcggaaat
     1921 gagcctcgtc gagagacccg cctgttcgag catgcagcgg accgcgacga aacgatacaa
     1981 tccggacgga tcaaacgtcg ctccaaggaa gcgactggcg tcctttgcaa aaccgatcga
     2041 gtttggcggg aggctgatgt cctcgaactc ggcgaaccag ccggtgatcc atggccgcga
     2101 tccaaaattg ggcggagcat gcatgaacgc acagccctcg cccgccatcg catacttata
     2161 ccctccaccg agatagaaag cgccttctcc aattcggcgt cccgcgttcg tgtcgccctc
     2221 gttaccaaga ggcgaagcaa tggccatgaa agcatggtag ccatcgatga cgacccaggg
     2281 accctcgggg cgcgcaagcg ccgcaagctc gtcgatctgg tcgaaaatgt gaccgctgcc
     2341 gaacatcacc tggctgacga aaatgaaatc gtgctcgcga cgattggccg cttcgagaaa
     2401 ccttgacgaa aaagtatcga agggctcgac cgggatctgt tcgacggatg catcgccagc
     2461 gtcggcccaa cgcgcgagct gccgtcgcgc actatggaat tcgccgtcgc tcgttaggac
     2521 ccgcgcgcgg cccgttctcg gagcagccgt gaagagccga acgagcagat cgtgcgtgtt
     2581 gggcgcaaac acgatcgcat ccggcgaccc ggtcgcgagt tcagctgcga cctctcgctg
     2641 cgcgcgcggc cagagctcgg ccatgacctt atcccatttt tggtcggcga gttcggcggc
     2701 atcgttccag gcttcgacct gcgcagagta actcgcatca ggccagaggt gatggctatg
     2761 agccgcgaaa tgaagtcggt cgggatttgc cgcgaggctc ctgctgaaca gcttcttgaa
     2821 actcaaagat cagtcctcaa ggcccacagc tcagggaaca gccttttatc gagggtcgag
     2881 cgaagatagc tcgccgcagc cgaaccgccg gtacccgtct tctgaccgat gattcgctct
     2941 acggtaagca catgcttgtg gcgccaagca gcgagcgcgt cgtcgatatc aaccagtttc
     3001 tcggcgagct catagagctc aaaccactgc tccgcgtcac gataaacttc caaccaagcc
     3061 gcagcgagcg ctccgacaga tttatcgcca acatcaaatc cgctgcgctc cagcgcgctg
     3121 attgcacaat cgcgaaggct cggctcgtca aaggcgctct gcaggcgaag ccgctctcga
     3181 gaaccttcgg gatagtggtc gagataagtg gaatccttca gccccagacg gtactcgagt
     3241 tcgcggaatt gctccgactg gaatccggaa cttgttccaa gcacgtgacg gaacttcagg
     3301 tagtcaactg gggtgagggt cgaaagaaca tcccaggaca aggtcatcac ggcctggatt
     3361 cggctgatac gcgccatcgc cttgtaagcc tgggcaaatg atgcggaagc gacgaggcgt
     3421 attgcaagat caagttcgtg aagcatctcc ttcatccaca gctccttcgt ctggtggatg
     3481 acaatgaaga gcatctcatc atgcagatcc gacagcggct gctgcgcgga aagcaaccga
     3541 tcgagcttca gataatcggc gtagctcaat ccggctggcg tcgcggtcat gccgcgaggc
     3601 ttaggacaaa caaccgctgt gcggaagcgg agggcgccgt gctactgttg agggccaccg
     3661 ccctgaccgg gaaggccggt tccgaccgaa ccgatgtttc cgaacagctc ttcgaaaaag
     3721 ctccgcttct tgccaagcgt ttcagtctgg cggtgcgccg gcgaaacgtt catcaccaac
     3781 tctttgcccg ttcgctgaat ggaagcgaca ttgcccttct gatcgaacct caccgtgagc
     3841 accgtttcgc gcgttacctt gggattgcgg aaggcaaccg cgttcacgtc gcgcgaaacg
     3901 taataccatt cattcggcgt gaattgcccg acgaaggtgg ggtgtccgag ggctttttcg
     3961 acgctgtcct tgttgtcaac gccgggttgt atggcgctaa caagctgcgg atccaaagtc
     4021 atgcccttgt gctggcgaat ctgggagcag ccggcgagca gcgctgcggc tgccatagtt
     4081 acgatcggta aaccgccaag cttcatgcat taaaaccttc attgcgcgcg tcagcgcgtg
     4141 aaaacgcgcc ttgtctggcg cttcgccggc ctcaatatgc gtgcggcggg gagctgcgca
     4201 agccaaggct ccacgcatag tcgaaaagtt gaggccgcga agaactatgc tccgtttcct
     4261 gttccgggga ttaacgacag aaaacgagcg tggtcgacca cttttcgaag ccgcgacggc
     4321 actagctcgt gagcctcact ggtatgttga aggtgccgtg caagatacgc tcgacggacg
     4381 ctttgcggtt ctttcgacga tcatcgcatt gatcatgact aggctggagc gcgaaggaca
     4441 tcgcggcgac cttgtttccg tagcgctgac ggagcgcttc atcgaggtta tggaaagcga
     4501 gcatcgcgaa cttggtcttg gcgacccaac gctgggcaag acagttcgaa agcttgtcgc
     4561 aatcctcgct cggcgaaccc aattgtggcg caagacggat agccatgagg agggttggaa
     4621 tgaggcgacg cacgaaagcc tctatcgaac gacacccagc tcggctgcac ttcgtcacag
     4681 cgctgacgca ttggcgagga ttgagaaaaa tctggccggc gcgacacttg atcaactcga
     4741 gcagggacag atccgttgaa agacccgttc gctcaccagc ttcgtctcga ccagattaga
     4801 gacggcgaac gcctcgacct cattgccgac gaggcagagc gcaaaactat tggcaagcgc
     4861 ctcgcgctcc tgtcgctcga tcgcctcgaa tgccatgtca cacttgcgaa gaccggcgat
     4921 gctgttcggg caggcggccg acttctcgca gcagtcggcc agagctgcgt cgttaccggc
     4981 gaacccgtgt cagcgcatgt cgatgagcat ttcgaaatcc tgtttatgcc cgaacctcac
     5041 aacccgcatt cggaagaaga aatcgagctt gatgagaaag attgcgacat cgttttccac
     5101 gatggcgcga cgatcgacct tggaagtgcc attgcagaca cgctagcgct aagcttggac
     5161 ccctacccga gaagtgccgc cgcagacgca gcgctcaagg aggcaggcgt tctcaccgag
     5221 gagcaagcaa gtccgttcgc gatgcttgcg cgcctcaagc gaaacgacgc cgatcagagc
     5281 tagagcttat tgcgcatcat gtgacggact gcgacttcaa cgctgaacgc aacttcctca
     5341 gccggccgat cgcacgccga gtgagcaagg cggtgaaatc ttggtcgatt tgcatcaaac
     5401 gaggtgagac tagaaaggta catcatcgtc gagatcggta tcgaacgccg ctggctgcgg
     5461 gcgcgcctgg ggcgatctcg agggggcgtt ccctccaaaa tcatcatagt cttcgccact
     5521 gaaagcgctg cggccggctg acgcgccctc gcggctgtcg aggagcacca gctcgccgcg
     5581 gaaacgctgc aggacgatct cggtagtata tcggtcgttg ccggactgat cggtccattt
     5641 gcgtgtctgc aactggccct cgacatatac ctttgaaccc ttgcggaggt aattcttcgc
     5701 cacccggcct aggttctcgt taaaaatgac gacgttatgc cattcggtgc gttcctggcg
     5761 gttcccgtcg cgatccttcc actgttcaga tgtggcgatt cgaatgttta cgacttcgcc
     5821 accgtta
//
LOCUS       DASRBJ010000161         7324 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_71288,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000161 DASRBJ010000000
VERSION     DASRBJ010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7324
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71288"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..961)
                     /locus_tag="VE968_04600"
     CDS             complement(<1..961)
                     /locus_tag="VE968_04600"
                     /inference="COORDINATES: protein motif:HMM:NF024884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
                     /protein_id="HZU51137.1"
                     /translation="MTEAQLKSSAASRIQAYAGAIILVGASTLVDLWIAPKWGTAAVD
                     MVYLPAVLAAAALWGIGPGLVAGTAAALAYNFFFTEPVHTFRMDRVADVVTVVVLLIV
                     ALVTSKLAAGIREQARLAAAHAARNATIAGFAGRLLSSSSETDIAQTACSELHRLFDC
                     NAIIVSGVPEPLTLAMAPPGNRLTPSEIAAAALTLESGEPAGRGTPRIQPAEWVFHAV
                     TASETVIAAAGLARDDGRPPVDDSQLPLLNNLLDQLALALIRARAEADRREVGSLRER
                     DRLRSALLSSVGHDLRTPLTGIIGAAAELRRRGGDENDLVATIE"
     gene            1171..3009
                     /locus_tag="VE968_04605"
     CDS             1171..3009
                     /locus_tag="VE968_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter Kup"
                     /protein_id="HZU51138.1"
                     /translation="MLGAIGVVYGDIGTSPLYTMKESFLGPHPLAVDHLHIFGVLSLI
                     FWTLMMIVTFKYVSVAMRADNRGEGGSFALLSLIARNLEGKKKWTPTLVLLGVLATCL
                     FYGDAMITPAISVLSAVEGLEVVQSGLQPAVVPISIAILVALFLMQSRGTAKVGNLFG
                     PVMLVYFAVLSVLGILNILAHPEIVGILNPLWAIRFFTYNPKLAFLALGSVFLAVTGA
                     EALYADMGHFGRKAINFSWVTLVYPCLVLNYMGQGALLLDHPGAATNPFFLLAPEALR
                     LPLVALATLATIIASQAVISGAFSVTHQAIQLGFLPRLRTEHTSEKARGQIYIPAVNW
                     GLLAMVVILVLGFRESGKLASAYGIAVTGTMLITSVMLGVLMVYVWKWNRLLAYAATG
                     IFLIVDGAYFASNITKIPDGGWFPLLVAAISFIVLTTWAKGRQLMRQRLSESALPLQV
                     FIKSAAASVHRVRGTSVFLSTSADVVPAALLHNLKHNQVLHERVLILNVKIEEVPHVA
                     ADKRLEVHNAGEGFYRVVLHYGYMEEVNIPGDLARIDTCGEPFTMMSTSFFLGRQKLI
                     ASKKRPGMALWREKLFAWMLKSSESAMEFFKLPTNRVVELGSQLQI"
     gene            complement(3006..3623)
                     /locus_tag="VE968_04610"
     CDS             complement(3006..3623)
                     /locus_tag="VE968_04610"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HZU51139.1"
                     /translation="MTRVLLVDDHPMIGAALEMLLRDTEYEILGRARSIAEANSKLAK
                     LKPDLLLLDVNLPDGSGIDVLRRLVRSRSAPKVILLTAGMDDAQHLSAAELKPQGMVL
                     KTSDPGLLIECIERVVAGEQWIDPEIAERTRLAQEKAASAPPLTRRERELVELVRQGL
                     RNRDIAAELGVTEGTVKVYLHAIFDKFRVENRTELALRAAELIGN"
     gene            complement(3620..5242)
                     /locus_tag="VE968_04615"
     CDS             complement(3620..5242)
                     /locus_tag="VE968_04615"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU51140.1"
                     /translation="MRSIFQYQSGRVIALGRVMLCAVLLIAISADHSEPHLAWVRTYS
                     LLTVYAAAAAAIAVLTWRNWWLDARLAVVTHGVDMAVFTAIVFSANSTTSPFFLFFVL
                     PLLSAAIRWSWRETTLTATVMVLLYMIAGLLIAGTGSFELERFIIRAGNLLILSLLLI
                     WFGIHQRRTNMFLRPDGLELGLGQRENPLAVALAFALNSSGASAGAIIVGAVGDDPSD
                     GFVIRDRISHGFNAERPLIRKWAPASFLYDLKKGRAVTREPESRFRFMKVRELIDLDE
                     ARSLELGDGVIAEVRTGTQHGWLLLWNVPELSADYIELGRELGRAAGAILDRHALLTA
                     IESSAAARTRLSLARDVHDSIVQFLAGTAIRLEAIKRAAKAGAEVEHDLDVLKRLLVE
                     EQGELRGFVTALRRDHELDLADALAELRSLAERLGRQWSVECRLRANGERASIPIRLQ
                     LDLQQLLREAVANAVRHGAAKHIDVALEISNDRLLLDVVDDGRGFSPSNGTSVEPWSL
                     KERVERANGSLKLVSSPGATNISISLPLGAAA"
     gene            5391..5606
                     /locus_tag="VE968_04620"
     CDS             5391..5606
                     /locus_tag="VE968_04620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51141.1"
                     /translation="MEQGPSNDYFERRAEEERIAAEKTTDERAAQSHRQLSEYYRAMA
                     SGSTGAATDAPELSDDGILSKDFQILP"
     gene            complement(5850..>7324)
                     /locus_tag="VE968_04625"
     CDS             complement(5850..>7324)
                     /locus_tag="VE968_04625"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HZU51142.1"
                     /translation="VLLHKQPFNSLEMELGTPRGARWISMAGDPIIDTAGRFEGFRGV
                     GSDVTEIRQTQERLTHLANVDVLSGLPNRGRVRQLLGEALRGATSGSVPCAIMFLDLD
                     GFKPVNDTFGHPKGDAVLRAVAKRLVDEVSSNGTVGRMGGDEFAIVIDDAQSRKKVEQ
                     LADRIINAIKEPYMIDQTEIRIGVSIGCAFGPIDGATVDDLILKADLALYQAKDAGRG
                     VARYFSSELQSEQEDRVRLEGDLRSAIASKQFHLVFQPLINAKSQKLIGFEALIRWNH
                     PKRGFVPPNVFIPVAEETGLMAAIGEWVIDEACRATASWPEPITVALNISPKQIVLPN
                     LPNIVSEALARHKLPGNRIELEVTEGVFLGDNGSTLDVLKRLRALGVGIALDDFGTGY
                     SSIGYLNKAVFHKLKIDGSFVREAGSRPENVAIIQSIVQLAKSFRMSVTAEGVETAED
                     FERMRDLGCDTIQGYLFGKPLAYERANQMVLGLSAKRMAG"
BASE COUNT         1504 a         2202 c         2135 g         1483 t
ORIGIN      
        1 actcgatagt cgccacgaga tcattctcgt cgccgccgcg acggcgaagt tcggctgctg
       61 cgccaatgat gccggtcagc ggcgtccgaa gatcgtgtcc gaccgaggag agcaaggccg
      121 agcgaagccg atcgcgctcg cgaagcgatc ctacttcgcg gcgatccgcc tcggcgcggg
      181 cccggatcag cgcaagggca agctgatcca gcaaattgtt gaggagaggc agctggctgt
      241 cgtccactgg tgggcgcccg tcgtcccttg caaggccagc cgcggcaatc accgtctcgc
      301 ttgccgtgac tgcatggaag acccattcgg cgggctgtat ccgcggcgtt cccctcccgg
      361 cgggctcccc cgattcaagg gtcagggccg ccgctgcaat ttcgctcggt gttagacggt
      421 tgcccggcgg agccatcgca agcgtcagcg gctcagggac tcctgacacg atgatggcgt
      481 tgcaatcgaa gagacgatga agctcgctgc atgccgtttg cgcaatatcg gtttcgctgc
      541 tggaagaaag caatcgaccg gcaaagcccg cgatcgtggc attacgtgct gcgtgggctg
      601 cagcaagtcg cgcctgttcc ctgatccccg ccgcgagctt gctcgtcaca agcgcgacga
      661 tcagcagtac gacgacggtc acgacgtcgg ccacgcgatc cattcggaac gtgtgaacgg
      721 gctcggtgaa gaagaaatta taggcaagcg ccgcagcggt gccggcaacg agccccggac
      781 cgattcccca cagcgcggcg gcggcaagga ccgccgggag atagaccatg tcaacggccg
      841 ccgttcccca ttttggagca atccaaaggt cgacgagagt cgaggcgcca accaggatta
      901 tagcgcccgc ataggcctgg atgcgagaag cggccgacga ctttagctgt gcctccgtca
      961 tttcggcaaa gtgggcttca ccgcttcaaa ggtcgagtgg caacggccga ttcttaccgc
     1021 catgtcatcg gccaatccgc caattccaca tggaatcttt acagcagagc gccgcaaagc
     1081 cgttgggtga acgacatcac tgctgacaat ctgcttccgg acgacggcgt agacgcccac
     1141 catgggccca aggaaacgct gcccaaactg atgctgggcg ccatcggcgt tgtctacggc
     1201 gacatcggaa catcgccgct ctacacgatg aaggagagct ttctcggccc gcatccgctt
     1261 gccgtggacc accttcacat tttcggcgtt ctcagtctca ttttctggac gctcatgatg
     1321 attgtgacgt tcaaatatgt gagcgtcgca atgcgtgccg acaatcgtgg cgaggggggc
     1381 tcgttcgcct tgctttcgct catcgcccgt aaccttgaag gcaagaagaa atggactccg
     1441 acgctggtgc tgctcggagt gctagccacc tgcctgttct acggcgacgc aatgatcacc
     1501 ccggccatct ccgttctttc cgccgtcgag gggttggagg tcgttcaatc cgggctccag
     1561 cccgccgtcg tcccaatatc gatcgcgatc ctcgttgcat tgttcctcat gcagtcgcga
     1621 gggactgcaa aggtgggcaa cctgttcgga ccagtcatgc tcgtttactt cgccgtactg
     1681 tccgttcttg gaatcttgaa catccttgct catcccgaga tcgtcggcat cttgaacccg
     1741 ctgtgggcaa tccggttttt cacctacaat cccaagcttg cctttctcgc cctaggatcg
     1801 gtgttcctcg cagtaaccgg cgctgaagct ctctatgccg acatgggaca tttcgggcgc
     1861 aaggcgatca atttctcatg ggtgactctc gtgtatccct gtcttgtcct caattacatg
     1921 ggacagggtg cgctccttct tgaccaccca ggcgctgcaa cgaacccgtt tttcctgctt
     1981 gcgcccgagg cactgagact gccgcttgta gcgctcgcga cgctcgccac gatcatcgcc
     2041 agccaagccg tcatttccgg cgctttttcc gtgacgcacc aggcaattca gcttggcttc
     2101 cttccgcggc tgagaaccga gcacacgagt gagaaggcgc gcgggcagat ctatatccca
     2161 gcagtgaact ggggccttct cgcaatggtc gtgatcctgg tgctgggttt ccgggaatct
     2221 gggaagctcg cgtcggccta cggcattgcg gtaaccggca caatgctgat cacatcggtc
     2281 atgctcggcg tgctgatggt ctatgtgtgg aagtggaatc gccttcttgc ctacgcggcg
     2341 acaggcattt tcctaatcgt ggacggagcc tactttgcct cgaacatcac gaaaataccc
     2401 gatgggggat ggttcccgct gctcgttgcg gcaatcagct tcatcgtact caccacatgg
     2461 gcaaagggtc gacagttgat gcggcagcgc ttgtccgaat cggccctccc cttgcaggta
     2521 ttcatcaagt cagcggcggc atcggttcat cgcgttcgcg gcacgtcggt ctttctttcg
     2581 acttcggcgg acgtggtccc ggcggccttg ctccacaacc tcaagcacaa tcaggtgctt
     2641 cacgagcgcg tcctcattct gaacgtgaag atcgaggaag tgcctcacgt cgctgccgac
     2701 aagcgtctcg aagtgcacaa cgccggcgaa ggcttctatc gcgtggttct tcactacggc
     2761 tacatggaag aggtgaatat ccccggcgat cttgcacgaa tcgatacgtg cggcgagccc
     2821 ttcacgatga tgagcaccag tttcttcctt gggcgtcaga agctaatcgc atcgaaaaag
     2881 cgcccgggga tggcgctctg gcgagagaag ctcttcgcct ggatgctgaa aagcagcgaa
     2941 agcgcaatgg agttcttcaa actgccgacc aaccgcgtgg tcgagctcgg cagccagcta
     3001 cagatctagt taccgatcaa ttctgccgcg cgaagtgcaa gttctgttcg attttcgact
     3061 cgaaatttgt cgaagatcgc atgcagatag actttcaccg tgccctcggt gacaccaagc
     3121 tcggcagcaa tgtcgcggtt gcgcaatccc tgtcggacaa gttcgaccag ctcccgttcg
     3181 cggcgcgtga gcggcggcgc cgatgcggct ttctcctgcg caaggcgagt acgttccgcg
     3241 atctcgggat cgatccactg ctcgccggcg accacacgtt cgatacactc gatgagcaat
     3301 ccgggatcgg acgtcttgag aaccataccc tgcggcttga gttcggctgc gctgaggtgc
     3361 tgggcgtcat ccattcccgc ggtcaagaga atgaccttcg gtgccgaccg ggaacgcacg
     3421 aggcgccgca gcacgtcgat gcctgatcca tcgggcagat tgacatcgag aagcaacaaa
     3481 tcgggcttta gctttgcaag cttgctgttg gcctcagcga tgctccgcgc gcggccaaga
     3541 atctcatact ccgtatcgcg cagcaacatt tcaagtgccg caccgatcat agggtggtcg
     3601 tctacaagca acactcgcgt catgcagctg ctcccaatgg cagagaaatg gagatattcg
     3661 tggcccctgg gctcgagacc agttttagcg acccgttggc gcgttcaaca cgctccttca
     3721 acgaccaggg ctcgacgctc gtaccgttgc ttggcgaaaa gccgcgaccg tcgtcaacaa
     3781 cgtcgaggag cagccggtcg ttgcttattt caagcgcgac gtcgatgtgc tttgcagcgc
     3841 catggcgaac agcgtttgcg actgcttcgc gcagcagctg ctgtagatcg agctgaagtc
     3901 gaattggaat tgatgctctt tcaccattcg ccctaaggcg acactcaact gaccattggc
     3961 gaccgaggcg ctccgcaaga ctgcgaagct cagccaatgc atccgccaga tcgagttcat
     4021 ggtcgcgcct cagtgccgtg acgaaaccac gcagttcgcc ctgctcctca accaagaggc
     4081 gcttaaggac atcgaggtcg tgctcgacct cggcgcccgc tttggcggca cgcttgattg
     4141 cctcaagcct gattgcggtt ccggcaagga actggacgat actgtcgtgg acgtcacgag
     4201 cgagcgaaag gcgggtcctg gcagcagcgc tactttcgat cgcggtgaga agtgcgtggc
     4261 gatcgagaat cgcgccggct gcccggccga gctcgcgccc caactcgata tagtccgccg
     4321 agagctcagg cacgttccac agcagcagcc aaccgtgctg cgttcccgtc ctcacctcgg
     4381 caatgacgcc gtcgccaagt tcaagcgagc gcgcttcgtc gagatcaatc aactcgcgaa
     4441 ccttcatgaa acgaaatcgg ctttcaggct cgcgcgtcac ggctcgaccc tttttgaggt
     4501 cgtagaggaa agatgctggg gcccattttc gaataagcgg tcgctcggca ttgaacccgt
     4561 gggaaattcg gtcccggatc acgaacccat cggatggatc atcgccgacg gcgccgacaa
     4621 tgattgcgcc tgcagaagcg ccactgctgt taagcgcgaa agctaaagcg acggcgagcg
     4681 ggttttcacg ctggccaagg ccaagttcta acccgtccgg gcgaaggaac atgttcgttc
     4741 gacgctgatg gattccgaac cagattagca gcagcgagag gatcaaaagg ttgcccgcgc
     4801 gaatgatgaa gcgttcaagc tcgaagcttc ccgtgccggc aatcaacagg ccggcgatca
     4861 tataaagaag caccatgacc gtggcggtca gcgtggtttc tcgccagctc cagcgaattg
     4921 ccgccgagag caagggaaga acgaagaaca ggaaaaaagg gctggttgtg ctgttcgcgg
     4981 agaagacgat agcggtaaac acagccatgt cgacgccgtg agtgacgact gcaagccgtg
     5041 catcgagcca ccagttccgc caggtgagga ccgcgattgc tgctgctgcc gccgcataga
     5101 cggtgaggag cgaataggtc ctgacccaag cgaggtgcgg ttcgctgtgg tccgcggaaa
     5161 tcgctatcaa cagcaccgcg cacagcatca ctcggccaag agcgatcact cggccgcttt
     5221 gatactggaa tatgcttcgc aaggcggcga attggctcag aacaaagtcc ccccggacga
     5281 caggcaaacg gcagtctacc gaaacgtaac gtaaggcaaa atcgtgaaaa accaatgagg
     5341 cttaatcgga gttagtgcct ttgagccgag cttcgttaca ttctgggctg atggaacagg
     5401 gaccttcaaa cgactatttc gaacggcgcg ccgaggaaga gcgcatcgcc gcagagaaaa
     5461 ccactgacga gcgcgcggcg cagtcgcatc gacagctttc cgaatattat cgcgcgatgg
     5521 cgtcaggatc gactggtgcg gcgacggacg ctccggagct ttcggatgat gggatcctct
     5581 cgaaggattt ccagattctt ccgtagatca cgactcgagc ttggccgaat cagcgagctt
     5641 tggcggcttt gacagctagg ctggcctggt cacccgatgt gcgatccacc gggctgcaaa
     5701 tgctgtgtag agcgttgacg tcgcgctccg tggcatgagc gccgtgagcg cagcggaacg
     5761 catcgtcgat cttgcttcgt ccaagccatt cgcacccgcg agcagagaca ttgattgccg
     5821 cgggcgcttg gacctaagcg cgccggcctc taccccgcca tccgttttgc gctgaggcca
     5881 aggaccatct ggttggcgcg ttcataggcg agcggctttc caaagagata gccctggatg
     5941 gtgtcgcagc cgagatcgcg catccgttcg aagtcttctg cggtctcgac accctccgcc
     6001 gtcacggaca tgcggaagct ctttgcaagc tggacaatcg actggatgat cgcgacgttt
     6061 tcggggcgcg aacccgcttc gcgaacgaaa cttccgtcga tcttaagctt gtggaacacc
     6121 gccttgttta aataaccgat cgacgaataa ccggtgccga aatcatcgag cgcaatgcca
     6181 acgccaagcg cgcgcagacg cttcaggacg tcgagagttg atccattgtc gccgaggaac
     6241 acgccttcgg taacctcgag ttcgattcgg tttcctggaa gtttgtggcg agcaagcgcc
     6301 tcgctcacga tattcggaag gttcggcagg acaatctgct ttggactgat gttaagcgcc
     6361 accgtgatgg gctcaggcca gctcgccgtt gctcgacagg cttcatcgat cacccattcc
     6421 ccaattgctg ccatgaggcc cgtttcctca gcaacgggaa tgaacacgtt gggcggcacg
     6481 aaaccgcgct tggggtggtt ccaacgaatg agcgcctcga agcctatgag cttctgggac
     6541 ttcgcgttaa tcagtggctg gaacaccagg tggaactgct tcgaagcgat tgcggatcga
     6601 agatcacctt caaggcgcac ccgatcttcc tgttcggatt ggagctcgga ggaaaaataa
     6661 cgagcaaccc cgcggccagc atccttcgcc tgatagagtg cgaggtcagc cttgaggatg
     6721 agatcgtcga cggttgctcc atcgattggc ccgaacgcac atccgatcga aaccccgatc
     6781 cggatctccg tctggtcgat catatagggt tccttgatcg cgttgattat gcgatcggca
     6841 agctgttcga ctttcttgcg gctctgggca tcgtcgatga cgatcgcgaa ctcgtcacca
     6901 cccatccggc caaccgtgcc gttgctgctg acttcatcaa ccagccgctt ggcgactgcc
     6961 cttaacacgg cgtcgccctt cggatggccg aacgtatcgt tgaccggctt aaagccatcg
     7021 aggtcgagga acatgatcgc gcatggcacg ctcccgctcg tcgccccgcg cagggcttct
     7081 cccagaagct gtcgaactcg cccgcgattg gggagaccag agagcacgtc cacgtttgca
     7141 aggtgggtca gtcgttcctg cgtctgacgg atctcagtga cgtccgaacc aacgccgcgg
     7201 aacccctcga agcggcccgc cgtgtcaatg atcgggtcgc ccgccatcga aatccagcga
     7261 gcaccacggg gcgtaccaag ttccatttca agcgagttga acggctgctt gtggagcagg
     7321 actc
//
LOCUS       DASRBJ010000162         6261 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_625060,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000162 DASRBJ010000000
VERSION     DASRBJ010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6261
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_625060"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..245)
                     /locus_tag="VE968_04630"
     CDS             complement(<1..245)
                     /locus_tag="VE968_04630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017499360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HZU51143.1"
                     /translation="MAMKTHQSFAARAFKFPRLFDALLRFVWGSAEGRYREKLLDIAN
                     VCEGESVLDVGCGTGTLAIAACRRVGSSGFVAGVDSSP"
     gene            519..1118
                     /locus_tag="VE968_04635"
     CDS             519..1118
                     /locus_tag="VE968_04635"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HZU51144.1"
                     /translation="MPTKPLIDRRSARTRRMLHEALMKLILRKHYDSITVQHIIDEAD
                     VGRATFYAHYAGKDDLLRRGFDHFRAELFETRAQRPNGDATPQLNFSSVVFAHVERFK
                     DIYRALVGSKASSIALREFRRLMVEAIRPEIAKCDHPRVPRELLAHFIADSIQSVVMW
                     WVELHPELSGAVVHEMFRELVAPVLAGACREARFAAAAA"
     gene            complement(1195..1761)
                     /locus_tag="VE968_04640"
     CDS             complement(1195..1761)
                     /locus_tag="VE968_04640"
                     /inference="COORDINATES: protein motif:HMM:NF025279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AhpC/TSA family protein"
                     /protein_id="HZU51145.1"
                     /translation="MSRLLPGERSPILRLNAADDALDLASGNLPTHLQFRRFAGCPVC
                     SLHIASFRRRADELRPVVREVMIFHSTIGEIDRYVHDLPFHVVADPTKRIYRAFGVEN
                     GRAVFTNPLGWPAILRSVTSTLARVLNRTAAFPPLSPLGGRLSLPADFLIAADGMVAA
                     VHYGKHVDDSWSVDEVLEQARRQHPSAP"
     gene            complement(1758..2168)
                     /locus_tag="VE968_04645"
     CDS             complement(1758..2168)
                     /locus_tag="VE968_04645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51146.1"
                     /translation="MRRPGTSAHSGAHVNSEADPSATVHIDRFYAQKEHLRELLDAIG
                     DTHSSLRDLPGFLRDLIVIRTATQWAVEIVTIVEWGSSRAMEDARQAVRDLASVRYLS
                     MQSLTPRLCAQVGRGDYRPLNPNPPHNNETSMSP"
     gene            complement(2168..2632)
                     /locus_tag="VE968_04650"
     CDS             complement(2168..2632)
                     /locus_tag="VE968_04650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51147.1"
                     /translation="MSAVSTASTDWRASSKSWIFAVALLVLTSIHHAYGALVYHSEWR
                     LHVVFVAIPLAAVIIVMARSRERSWRIYAALLMIIFAVMLIGVFEGGYNHLVKNIVYF
                     TAGADRTRALFPPPLYELPGDAFFELTGIAQFLIAPFAALGAVRLLREAMLL"
     gene            complement(2980..4410)
                     /locus_tag="VE968_04655"
     CDS             complement(2980..4410)
                     /locus_tag="VE968_04655"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HZU51148.1"
                     /translation="MASFRIVATIARELGPCLLAASVSANAAVPPPPHPNQQVTAIVD
                     VNVVPMDTERVLQDQTVIIEGGKIAAIGSGLPIPPNARVIRAKGEYLSPGLADMHTHS
                     TTREDLAVYLANGVTTVLNMGGATSGFMDTIRPGANSGVIPGPHVYAGFMLDGSPRYN
                     NFFVTTPEQARAIVGIGKTNGYDFIKVYNDLSEPAFNALASEGKIEHVPIIGHGVSAV
                     GLRRQLDAGQVMVAHTEEFLYTVFYDPAHLPSTGAPDASKIPGVIDFVLRHKAFVTAD
                     LNTYATIAHQWGKPTAVNNYLRMPEVKYLRPDDRIRWARADYADRQGSIDARLSFLRQ
                     FTKAMNDKGVNLIAGTDAPSIAGLVPGYSLHDDLAALRSAGLTPFDVLSTATRIPGKF
                     IQATLPAEEPFGTVTVGSRADLVLTAKNPLKALSTLRTPIAVMAHGQWYSASRLHALL
                     DLVAAEYRRALNPAISAKRSASISND"
     gene            5023..5673
                     /locus_tag="VE968_04660"
     CDS             5023..5673
                     /locus_tag="VE968_04660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51149.1"
                     /translation="MTVEALTRANVSGWEHVHGPLQAHSCGMSRSLRFTGISARRASA
                     NFLPRGRWHDVEGSRRGGIAMGAPLSSGLFGVALLSVFAAAPASVVDGQRSSLGTSAR
                     TWVLVDQRAQPLLLRLVRGSARIVRRGGPLKIELRRHSKLDDPGRVSFIVKKDARSIT
                     ITDRYPYVGGSGDRECLPPDDDRGHFWGSDIVVDAVIYAPPGLRVTAEIMDARLSG"
     gene            complement(5695..6225)
                     /gene="merB"
                     /locus_tag="VE968_04665"
     CDS             complement(5695..6225)
                     /gene="merB"
                     /locus_tag="VE968_04665"
                     /EC_number="4.99.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF015216.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018836 - alkylmercury lyase activity
                     [Evidence IEA];
                     GO_process: GO:0046413 - organomercury catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="organomercurial lyase"
                     /protein_id="HZU51150.1"
                     /translation="MHDAHSLLLHPHRCAAWVVHPFALSPGSCWVEIGARGWWANCVY
                     CAMGIAASLKADADISTRIGGEREPVVIRIRDDDVLERDLLLHLSTPVREWWDNVIHA
                     CATFQPFRRKSDVHVWCERHAMPLGAIIPLPEMYAFARDWYGDYVDKPWRKRSRDETV
                     ALFAKHGFEGEFWKVE"
BASE COUNT         1301 a         1808 c         1854 g         1298 t
ORIGIN      
        1 ggggatgaat caacgcccgc gacgaaaccg ctgctcccga cgcgtctgca ggcggcaatc
       61 gcgagtgttc cggtaccgca tccaacatca agaacgcttt ccccttcgca cacgttggca
      121 atgtccagta atttctcgcg ataccgcccc tcggccgatc cccagacaaa ccgaagcagc
      181 gcatcgaaca atctcggaaa tttgaatgca cgagcagcaa atgactggtg cgtcttcatg
      241 gccatgcctt gtcctggaga agagcctagg accgctgcac ccgtcacgca cagcggtcct
      301 agggcgacat gtcagcttct gacgctcagg tcgtcgctgc tcggaagcag cccgaaccgg
      361 gggcgattgc gccatccgcc ttccatgcgc gcactgttca gcgtccggct tgataccgaa
      421 catgatgttc agtaatgacc acagtgtctg gggcgaacga tgcaagcatt gctgatgtct
      481 atttcgagac gaaagggtga attatgtctg gaaaaagcgt gcccacgaag ccgctgatcg
      541 atcgtcgctc ggcgcggact cgccgaatgc ttcacgaggc gctcatgaag ttgatcctca
      601 ggaagcatta tgattcgatc acggtgcagc atatcattga tgaagccgac gtcggacgcg
      661 cgaccttcta tgcgcattac gctggcaagg atgacctgct tcgccgtggt ttcgatcact
      721 ttcgtgccga actattcgaa acgcgtgcgc agcgacccaa tggcgacgct acgccgcagc
      781 tgaacttttc ttccgtcgtg ttcgcgcacg tcgaacggtt caaggacatc taccgcgcgc
      841 tcgttggaag caaggcgagc tcgatcgcac tgcgtgaatt ccggcgatta atggtcgagg
      901 caatccggcc tgaaatcgcg aaatgcgatc atccgcgagt ccctcgagag ctgctggcgc
      961 atttcattgc cgattcgatc cagtcggtgg tgatgtggtg ggtcgaactc catcccgagc
     1021 ttagtggtgc cgttgtccac gagatgttcc gagaactcgt cgctccagtg cttgccggtg
     1081 cctgccgcga agcgagattt gccgcagccg ccgcctaagg ggccagtgcg ctcatgtgac
     1141 gctcaagttt gcgtcaaggc gtgttctcga tcgatcaagc ggtgtgcgcg cccattatgg
     1201 ggccgatgga tgttgccgcc gtgcctgctc aaggacttcg tcgacggacc agctgtcgtc
     1261 gacgtgcttt ccataatgaa cagcagccac cattccatcg gcagcgatca ggaaatccgc
     1321 tggcagactc aatcttccgc cgagcggact gagaggagga aaggcggcag tccggttgag
     1381 aacacgcgca agcgtcgacg tgaccgatct caaaatcgcc ggccatccta gtggattggt
     1441 gaagacggca cggccatttt ccaccccgaa cgcgcgataa attcgcttcg tcggatcagc
     1501 aaccacatga aacggcagat cgtggacgta acggtcgatt tcgccgatag ttgagtgaaa
     1561 gatcatgacc tcacgaacga cgggccgcaa ttcgtcggcg cgccggcgga atgaggcaat
     1621 gtgaaggctg caaacgggac agccggcaaa gcgccgaaac tgcaggtgcg tcggcagatt
     1681 tcctgacgca aggtcgagcg catcgtcagc cgcgttgagc ctcaatatcg gagagcgttc
     1741 gccgggcagg agtcgactca tggcgacatg ctggtttcat tattatgcgg cggattggga
     1801 ttgagtggcc ggtaatctcc tcgcccgacc tgcgcgcaca accgcggtgt cagtgattgc
     1861 atgcttaggt aacggaccga cgcgaggtcc ctaaccgcct gtcgcgcgtc ttccatcgcc
     1921 cgcgagcttc cccattcgac gatggtcacg atttcgaccg cccattgcgt cgcagttcga
     1981 atgacaatga ggtcacgcag gaaccccgga agatcacgca acgatgagtg cgtgtcgcca
     2041 attgcatcga gcagctcgcg caaatgctct ttttgcgcgt agaagcggtc aatgtggacc
     2101 gtcgccgagg gatccgcctc ggaattgacg tgcgctcccg aatgcgccga cgttcccggt
     2161 ctcctcatca cagcagcatc gcttcacgca agagtcgaac agctccaagt gccgcaaatg
     2221 gcgcgatcag gaactgcgcg attccggtga gttcgaagaa ggcatcaccc gggagttcgt
     2281 agagcggtgg agggaacaag gcccgcgtcc ggtcggcacc ggccgtgaaa tagacgatgt
     2341 tcttgacgag atgattatag ccgccctcga agacaccgat gagcatgacg gcgaatatga
     2401 tcatcagcag cgcggcatag attcgccatg aacgttcacg cgatcgcgcc atgacaatga
     2461 tcacggctgc tagcggaatc gcgacaaaga cgacgtgcag acgccactcg ctgtggtaga
     2521 cgagcgctcc gtacgcgtga tgaatagaag tcaagaccag cagtgcgacg gcaaagatcc
     2581 acgattttga tgaggcgcgc cagtccgttg acgctgttga aaccgcactc attcaaacct
     2641 tctccaaaca atcgatgatc atctggcaga tagtttcctt ctcgagagcg gctgagggcc
     2701 tttcgtgcac ttgctctggc cgaggcgttc agcatcgaac tacgcattgc caattggacg
     2761 caaaaaagcg cgcgcttcgg aaaaccgtcg acattcttcg acttgtgagc gcgacgaagc
     2821 gcttctttgt ggtgcgcctt cctgccgcgg cttcccggaa cgatcttgga ggctgtttca
     2881 cgtcacgatg atccgcgagt ggcgctaacc acgacagcaa agcttcggca gacgagtgta
     2941 ccggcatcac ttccgcgctg gtgatttgtg tgccgttggt tagtcgttgc tgatgctggc
     3001 gcttcgtttc gccgaaatgg ccggattgag ggcccgtcga tactcggcgg caacgaggtc
     3061 gagcagagcg tgtagccttg atgccgaata ccattgacca tgcgccatca cggcgatcgg
     3121 cgttcggagc gttgataacg ccttaagcgg gtttttcgcg gtgaggacga ggtcagcccg
     3181 actgccgact gtgacggtcc caaacggctc ctccgctgga agagtagctt ggatgaactt
     3241 gccaggaatg cgcgttgccg tcgaaagcac gtcgaatggc gttaaaccgg cactccggag
     3301 cgcggcgaga tcatcgtgca gcgaatagcc ggggacgagg ccggcaatgg aaggtgcgtc
     3361 agttcctgcg atcaaattga cgcccttgtc gttcatcgcc ttcgtgaact gccggaggaa
     3421 ggataatcgc gcgtcaatcg atccctgacg gtcggcgtaa tccgcgcgcg cccagcggat
     3481 acggtcatcc ggtctcagat atttgacttc cggcattcta aggtaattgt tgaccgcggt
     3541 cggtttcccc cattggtgcg cgattgttgc gtaggtgttg aggtctgcag tcacgaacgc
     3601 cttgtgacgc aacacaaagt caatgacgcc tggtatcttg gacgcatccg gcgcgccggt
     3661 gctcggaagg tgagcgggat cgtaaaagac cgtgtaaagg aactcctcgg tgtgggcgac
     3721 catcacctga cccgcatcga gttggcgcct cagtccaaca gcactaacgc catgaccaat
     3781 gatcggcacg tgctcaatct tgccttcgct ggcgagcgca ttgaaagccg gctccgagag
     3841 atcattgtag accttgatga agtcatagcc atttgtcttg ccgatgccga caattgctcg
     3901 agcttgttcg ggcgtcgtca cgaagaagtt gttatagcgc ggcgagccat cgagcatgaa
     3961 cccggcatag acatgcggtc caggaatgac gccgctgttt gcaccaggcc tgatcgtgtc
     4021 catgaatccg gatgttgcac cgcccatatt gagaacggtg gtgacaccgt ttgcaaggta
     4081 aacggcaaga tcctcgcgtg tcgtcgaatg cgtgtgcatg tcggcgagcc cgggtgaaag
     4141 atactcgccc ttagcccgga tcacgcgggc atttggcggt atcggaagac cgctgccgat
     4201 tgcggcaatt ttgccgccct cgatgatgac cgtttgatct tgcagcactc gctcggtgtc
     4261 catcggcacg acgttgacgt cgacaattgc agtaacctgc tgatttgggt ggggaggagg
     4321 aggaacggcc gcattcgcac ttaccgaggc ggcgaggaga caaggtccga gttcgcgagc
     4381 tattgtagcg acgatgcgaa aacttgccat ggtcgcttga gtcatccaca tcctccgatg
     4441 atgttcgggg aacctccatc cgtggacccg acagtcgatc ttacttgacg atcaatcctg
     4501 ctacgaaatc agtccaaaat cttgaagcca ccgcccgaaa ggtggctccg atatttgccg
     4561 atccttctcg aatgtacttg caacggcatt gcgacagtct cttatcgtac tttgcagcat
     4621 catttgttcg gcaaattaga cggacgacca gcgggcgccg cagccgctct ctcgctcttg
     4681 gtgagctgct cctgatgaac cgttccgctt tggctgcccg gtttgttgca tgggaattcg
     4741 gaaaaaaggt gcacgatcag ccgggcgttg agaacatgct tggaacatgc gccggcgcct
     4801 ttaacccttg tggtctggac atgcgcgccg gccacccggc ggaaaacggg tccgccattc
     4861 ctcaagcagg gttctcaatg ccccggcgcc ttttccaagc cgcgcttcac gcctgatacc
     4921 tttgcgcgtt cgcagcaacc ccaagccgaa cgacttcggc gatcggcgca cgttagcgaa
     4981 catcgaggcg catgtttcga gcgcaacaag ccggaagcgg cgatgaccgt cgaggcgcta
     5041 acccgcgcca atgtcagcgg atgggagcac gtccatggac ctttgcaagc gcatagctgc
     5101 ggcatgtcgc ggtcgcttcg ttttacggga atttcggcgc gccgcgcatc ggcgaatttt
     5161 cttccgcgcg ggcgctggca tgacgtcgaa ggctcaaggc gagggggaat tgcaatgggc
     5221 gcgccgctga gctcgggcct gtttggtgtc gcccttctca gtgtgttcgc tgccgcgccg
     5281 gcttcggttg tcgatggtca gcgaagctcg cttggcacaa gtgctcgcac gtgggttttg
     5341 gtcgatcaac gagcgcaacc gctcctcttg cgtcttgtcc ggggatcggc acggatcgtc
     5401 cgccgcggtg gcccgctcaa aatcgagttg cggcgccact cgaagcttga cgatcccggc
     5461 cgcgtttcat tcatcgtgaa gaaggacgcg cgatccatta cgatcactga ccgctaccca
     5521 tatgtgggtg gaagtggtga tcgcgagtgc cttccacccg acgatgatcg tggccatttc
     5581 tggggtagcg acattgtcgt cgacgccgtg atctatgccc cgcctgggct tagagtcact
     5641 gcggaaatca tggacgcgcg attatccggc tgagcggctc acggaagatc gatgtcactc
     5701 gactttccag aactcgcctt caaagccatg cttcgcaaag agcgcgaccg tttcgtcgcg
     5761 cgaccgcttt cgccacggct tgtcgacgta atcgccgtac cagtctcttg caaatgcgta
     5821 catctccggg agcggaatga tcgctcctaa aggcatcgca tgtcgttcgc accaaacgtg
     5881 aacatcgctc ttgcgacgaa acggctgaaa ggttgcgcag gcgtggatta cgttgtccca
     5941 ccattcgcga accggcgttg aaaggtgaag tagcaagtcg cgctcgagca cgtcgtcatc
     6001 acgtatgcgg atgactaccg gctcccgctc accgccaatg cgcgtcgaga tgtcagcatc
     6061 cgctttgagc gaagccgcta tacccattgc gcaatagacg cagttcgccc accaaccgcg
     6121 cgcccctatc tcaacccagc acgagccggg cgagagcgca aatggatgaa cgacccaagc
     6181 ggcgcagcga tgcggatgga gcaggagcga gtgcgcatcg tgcaatcgct gaagcgcctg
     6241 ttcaatgtcg tggattggcg t
//
LOCUS       DASRBJ010000163         3785 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_625120,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000163 DASRBJ010000000
VERSION     DASRBJ010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3785
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_625120"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..584
                     /locus_tag="VE968_04670"
     CDS             162..584
                     /locus_tag="VE968_04670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51151.1"
                     /translation="MMSLRLLETWRSELGLDLDRALIVLATAAVTMEKFTRHEFEGEL
                     GDIRSAMPAELLTRCYVSSIAAATGLNRETARRKVKAMIADGILLTDERGSIRLSPAY
                     TCKVRTSEMLVKHLQTIVHTTNDLLKAEVVDVSGTFPT"
     gene            complement(665..1480)
                     /locus_tag="VE968_04675"
     CDS             complement(665..1480)
                     /locus_tag="VE968_04675"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: protein motif:HMM:NF020090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HZU51152.1"
                     /translation="MTTAYAEVIGDPVTHSKSPLIHNHWLECLGINAEYRATTVRGGE
                     LAKFIAERRSDPDWRGCNITLPHKETALVHADLLSDETRAIGAVNCIVPRGNLLVGYN
                     SDVEGVAAALDRLTLGGRKVVIIGGGGAARAALSYLARRDTGEIVVLVRDVERARPLK
                     RMLPSGLLSVGSLSDPTTFMAGASLIINASPLGMRGCASMPVDLISAVSAQDADLFDM
                     VYDPITSDFLAAGNSQRIDGLSMLLGQAREAFERFFGVPPPSVDVELRSALSG"
     gene            complement(1482..2576)
                     /gene="aroB"
                     /locus_tag="VE968_04680"
     CDS             complement(1482..2576)
                     /gene="aroB"
                     /locus_tag="VE968_04680"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HZU51153.1"
                     /translation="MQNVHVDLGGAGYDILIGDGLLDRAADYLEPLAREGRLLVVTDE
                     NVWNIAGARFATALGNIKVTPILVAAGEQSKSWVGLQSVVERLLAERIERTDHVIAFG
                     GGVIGDLAGFAASIVKRGCSFVQVPTTLLAQVDSSVGGKTGIDVSAGKNLVGAFHQPS
                     LVLIDPTLLDTLPEREIRAGYAEIVKYALIESASFFAWLEEHGPDVITGESISRARAI
                     ITAVSGKARIVEQDERERSGRRALLNLGHTFGHALEAEAGYSSRLLHGEAVALGCTLA
                     FDYSSRRRICTNEDAARVRCHFSRLRLPTTLAEVGLEARGSDLVRHMEFDKKREQGRT
                     AFILARGIGRAYVDTEVDLADIAAFLDEQP"
     gene            complement(2581..3639)
                     /gene="aroC"
                     /locus_tag="VE968_04685"
     CDS             complement(2581..3639)
                     /gene="aroC"
                     /locus_tag="VE968_04685"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HZU51154.1"
                     /translation="MSVNSFGHVLRFTTWGESHGPAIGGVIDGCPPGLALEEGMIQRW
                     LDKRRPGSSRYTTQRREPDQVRILSGTFEGRTTGTPISIMIENVDNRSKDYSNIAEAY
                     RPGHADFTYEVKYGLRDWRGGGRSSARETAIRVAVGAIARLIIPEIRILGYLVELGGD
                     PVDRSNFDETAIGESPFHSPDRRAAERWAGSLDEARKAGSSLGAIVECIAEGVPAGLG
                     APIYGKLDGDLAAALMSINAAKGVEIGDGFAAARLRGEQNVDAIRAGPSFLSNHAGGI
                     LGGISTGQPVVTRVAFKPTSSLPRPLPTITRDGTETEIATTGRHDPCVGIRAVPVVEA
                     MVAFVLADHKLLHRAQCG"
BASE COUNT          773 a         1160 c         1086 g          766 t
ORIGIN      
        1 caacggatta cgcgtccaac acgatgcgtt cttcgcgagt gcgaggaagg attggctgct
       61 ctttgaatcg cttgaaccac gagagccatt ctcgatctcg actcgctgcg aatttcgacc
      121 gattggaatc gcgcacgagg ccgtttggcg ttcgcgttgc gatgatgtct ctgcgccttc
      181 ttgaaacatg gcggtcggaa ctgggactgg acctcgaccg cgcactgatc gtgcttgcga
      241 cagcggctgt gacgatggag aagttcactc gccacgagtt cgagggcgag cttggcgata
      301 ttcgcagcgc gatgcccgct gagcttctga caagatgtta tgtaagctcc attgctgccg
      361 cgacgggact caaccgtgaa accgcacgcc ggaaggtaaa ggcgatgatt gccgatggca
      421 ttctccttac cgacgaacgc ggatcgatcc ggctcagtcc agcctacacc tgcaaggttc
      481 gaacgagcga gatgctcgtg aagcatctgc aaacgatcgt tcatacgacg aacgacctgc
      541 tgaaagccga agtcgtcgat gtgagtggta cctttccaac atgaggttag cagccgtcgc
      601 gactgaaata ctcaaccgac actgctcgcg cgacgaaccg gtcgcgaaac caaataggca
      661 cgtttcaccc ggataatgcg cttcggagct ccacgtcgac gctgggcggc ggaaccccaa
      721 agaagcgctc gaatgcttcc ctcgcctgtc caagcagcat cgacaaaccg tcaatgcgct
      781 gggaattacc ggcggcgagg aagtcgcttg taatcggatc atagaccatg tcgaacaagt
      841 cggcgtcctg cgcggaaacg gccgaaatga ggtcaacggg catgctagcg cagcctctca
      901 ttccgagtgg actcgcgttg atgatcagtg aggcgccggc catgaaggtg gtgggatcgc
      961 tcaaggagcc gacgctcaaa agtccagacg ggagcatgcg tttaagcggt cgcgctcgct
     1021 cgacgtcgcg cacgaggacg acgatctcgc cggtgtcgcg cctcgcgaga tagctgaggg
     1081 ctgctcgagc agcaccacct cctccgatga tgacgacttt tcggccacca agtgtcagcc
     1141 gatccagcgc agcggccacc ccttccacat cgctattgta cccaacgagc aaatttcctc
     1201 gcggcacaat gcaattgacc gcccctattg cgcgcgtttc gtcgctgagc agatcggcgt
     1261 ggacaagcgc cgtctccttg tgcggaagag tgatgttgca accgcgccaa tcaggatctg
     1321 aacgtcgctc agcgatgaac ttcgcgagct cgccgccccg cacggtcgtt gctcggtact
     1381 cggcattgat gccgagacat tcgagccaat gattgtgaat cagcggtgat ttcgaatgtg
     1441 tgaccgggtc gccgatcact tccgcatagg ccgtggtcat ttcacggttg ctcgtcgaga
     1501 aaggccgcga tgtcagcaag gtcgacttcg gtatcgacgt aagcgcgacc tatgccgcgc
     1561 gcgaggatga acgccgttcg gccttgctcc ctcttcttgt cgaactccat atgtctgacg
     1621 agatcagacc ctctcgcctc cagaccgacc tcggcgaggg tcgtcgggag tcgcagccgg
     1681 gaaaaatggc agcgaacgcg cgctgcgtct tcgttcgtgc aaatccgccg cctgctcgaa
     1741 taatcaaacg ctaacgtgca tccgagcgct acggcttcgc cgtgcaggag ccggctcgaa
     1801 tagccagctt ccgcctcaag cgcgtggccg aacgtgtgtc cgagattgag aagcgcgcgc
     1861 cggccgctcc tttcccgctc atcctgttcg acgattcggg ctttaccgga aacggcggtg
     1921 ataattgctc gagcgcgact aatggattcg cccgtgatga catccggccc atgctcttcg
     1981 agccacgcga aaaaactcgc gctttcgatc aaggcatatt tgacaatctc ggcgtagccg
     2041 gcgcggatct cacgttcggg caacgtgtcg agcagtgtcg ggtcaatcag caccaatgac
     2101 ggctggtgaa acgcaccgac cagattcttc ccggccgaca cgtcaattcc tgtcttgccg
     2161 ccgaccgagc tgtcgacctg cgcgagcaaa gtggtcggca cttggacgaa gctgcagccg
     2221 cgtttaacga ttgaggcggc aaatcccgcg aggtcaccaa tgacgccgcc gccgaatgct
     2281 ataacatgat cagtgcgttc gatgcgttct gcgaggagac gttcgacgac tgactgcaag
     2341 ccgacccagc tcttgctctg ctctcccgcg gcgaccagga tcggcgtcac ttttatgttg
     2401 ccaagtgctg tcgcgaaacg agccccggcg atattccaca cattctcgtc ggtaacgaca
     2461 agcagccgcc cttcgcgcgc aagcggttca aggtaatcgg ctgcacgatc gaggagcccg
     2521 tcgcctatga gtatatcgta gccagcgcct ccgagatcga catgaacgtt ctgcatgcgc
     2581 ttacccacac tgggcgcgat gaaggagctt gtggtcagcg aggacgaacg caaccatggc
     2641 ttcgaccacc ggtactgcac ggatcccgac gcacgggtcg tggcgacccg ttgtcgcgat
     2701 ctccgtctcg gtgccgtcgc gggtaatcgt cggtagaggt cttggcagcg acgaggtcgg
     2761 tttgaacgcc acgcgcgtaa ccaccggctg tcccgtcgag attccgccga gaattcctcc
     2821 ggcatgattg gacaggaacg acggcccggc tcttattgca tcaacattct gctcgccgcg
     2881 cagtcttgct gctgcaaacc cgtctccaat ttcgacgccc ttcgcagcgt tgattgacat
     2941 gagagctgcc gcgagatcac cgtcaagctt cccgtaaatc ggtgcgccca agccggctgg
     3001 aactccttcg gcaatgcatt cgacaatcgc tccaagtgat gatcccgctt tgcgtgcttc
     3061 atcgagactt ccggcccagc gctcggcagc gcgacgatcg ggggagtgaa aagggctttc
     3121 accgatggcc gtttcatcga agttcgatcg gtcaaccgga tctccgccaa gttcgacaag
     3181 atagccgagg atccttattt ccgggattat caaccgagcg atagcgccca ctgcgacgcg
     3241 tattgccgtc tcgcgtgcgg agcttcttcc tcctccgcgc caatctcgaa gaccgtattt
     3301 cacctcgtag gtgaaatccg cgtgcccagg ccggtatgct tcggcgatat tcgagtagtc
     3361 ctttgaacga ttgtcgacat tctcgatcat gatgctgatc ggggtgccag tcgtcctccc
     3421 ctcgaaggtg ccggaaagta tgcgaacctg gtcgggttca cggcgctggg tggtgtatcg
     3481 actgctcccc ggccgccgct tgtcgagcca gcgctggatc atcccttcct cgagtgccag
     3541 tccaggtgga catccatcga tgacgccgcc gatggcggga ccgtggcttt cgccccacgt
     3601 cgtgaagcgc agaacatgtc caaagctatt gacgctcacg aatgccctcg tcggcaacca
     3661 agaaggtgct catgagacgt aagcaccgat tgacctcatc agctcggcaa aaccgggaaa
     3721 actcgtcgcg atcatgtcac cgccgttcac cttgaccggg ttacgtgccg ccactccaag
     3781 cacca
//
LOCUS       DASRBJ010000164         3306 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_579255,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000164 DASRBJ010000000
VERSION     DASRBJ010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3306
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_579255"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..903)
                     /locus_tag="VE968_04690"
     CDS             complement(<1..903)
                     /locus_tag="VE968_04690"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate-forming enzyme family protein"
                     /protein_id="HZU51155.1"
                     /translation="MRNELDRRFDEELAKVTGPGGRLSVGEDEQGRAVVTNLPSTLPA
                     FFKAFCALNGANEAVVAGNERLTFADLDRISDGLAQALLARGIVKGDRVAIAMRNCPA
                     WIISYMAIAKVGAIATLLNGWWEPAEMEHAITLTEPKLIIADDARGRRILERCGTFDT
                     VCLPISERVEDAIEPLLRSTGGEFILPQVSADDDATILFTSGSTGDAKGAVSTNRAVT
                     TGVYAYSTGLAVLLGLLTQDGKAPATPPRTLLSVPLFHVTGEVPVMLNSFVIGRCMVI
                     MPKWDATEALRLIEKERITYFVGVP"
     gene            961..1851
                     /gene="lgt"
                     /locus_tag="VE968_04695"
     CDS             961..1851
                     /gene="lgt"
                     /locus_tag="VE968_04695"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009820541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HZU51156.1"
                     /translation="MGKPLQAVDNSRFLAFPDLGLSPVALHIGPFDLRWYSLAYLAGI
                     FIGYWYLLKLLKQPGAPMARRHADDLVFYAALGIILGGRIGYVLFYNLAEYLRHPIEI
                     LKLWDGGMSFHGGVVGTSLGIIYFARKEKLNWLRIHDYVACCVPFGLFFGRLANFINQ
                     ELWGAPTTVPWAIRFVEQTPFGPMLGPPRHPSQLYEAFLEGILLFAILAFMFWRTKAR
                     YDPGKLVGTFLFFYGLFRFGVEFIREPDQQLRAFAEATHLHMGQWLSLPMIIGGLYLI
                     VTSAGRRVRVESTAGTASVA"
     gene            1848..2825
                     /locus_tag="VE968_04700"
     CDS             1848..2825
                     /locus_tag="VE968_04700"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HZU51157.1"
                     /translation="MTPFERALRERISAEGPITLEAYMEACNAYYYATRDPLGAAGDF
                     TTAPEVSQMFGELIGAALADCWKKAGSPADATYVELGPGRGTLASDALRVLRRAGFGG
                     DVHLVETSPLLKDAQRKSVPDAHWHEALEDVPAKPLLLVANEFLDALPVRQHIGGIER
                     RILVAAGGLAFDRDGEIIETSPARDDVVRTIASRCKANGGVAIIVDYGHARSAPGDTL
                     QAVRGHRFAAVLDRPGEQDLTSHVDFETLGTTGRSAGALVTRVIGQGEWLKRLGIETR
                     AAVLSHANPDRRDDLKSAVDRLTAPDQMGELFKVVALHSAKWPAPAGFR"
     gene            2822..>3306
                     /locus_tag="VE968_04705"
     CDS             2822..>3306
                     /locus_tag="VE968_04705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HZU51158.1"
                     /translation="MTASFRSARVEDAAAISKIFETSFCDTFGHLYRAADLSAFLSAH
                     SIDTWERQLRDPAFAFRIAEADGEAVGYVKLGPVKLPVEPAGPAILLDQLYVLKEHHG
                     SGIAHGLMEWAVAEAEAQRAREIYLTVYVDNHRAKRFYDRYGFEAVGRYDFMVGTHAD
                     E"
BASE COUNT          612 a          977 c         1009 g          708 t
ORIGIN      
        1 cggcacgccg acgaagtagg tgatcctttc cttctcgatg agccgcaagg cttcggtcgc
       61 gtcccacttg ggcatgatca ccatgcagcg accgatgacg aagctgttga gcatgaccgg
      121 gacttcgcca gtgacgtgga acagcggcac gctgagcaaa gtccgcggcg gcgtcgcggg
      181 cgctttgccg tcctgcgtca acaaaccgag gagaacagca agcccggtcg aataagcgta
      241 gacgcccgtc gtgaccgcac gatttgtcga aacggcacct ttcgcatcgc ccgtcgatcc
      301 cgaggtgaag agaattgttg catcgtcgtc ggcactgacc tgcggaagga tgaattcgcc
      361 cccggtggaa cgaagcaatg gctcgattgc gtcttcgaca cgctcgctga ttggaaggca
      421 gaccgtgtcg aaggtgccgc accgctcgag gatgcgcctg ccgcgtgcgt cgtcggcaat
      481 gatgagcttg ggttcggtca gggtgatcgc atgctccatt tcggcaggct cccaccagcc
      541 gttaaggaga gtggcaattg cgccgacctt ggcaattgcc atgtacgaaa tgatccacgc
      601 ggggcaattg cgcattgcaa tcgcgacgcg gtcgcctttc acgattccac gtgcgagcaa
      661 ggcctgggca agcccatccg agatacggtc aagatcggca aatgtcagtc gctcgttccc
      721 agcgacaacg gcttcatttg cgccattgag agcgcagaag gccttgaaga atgctggcag
      781 ggtcgagggc aggttggtaa cgaccgcgcg accttgttcg tcctcgccga cgctgagcct
      841 gccaccggga ccggtgacct tcgcgagttc ctcatcaaac cggcggtcga gctcatttcg
      901 cattcgatcg tgcgctcctt tgcctttggg gctcaccgcc ttatgaggcg ctgaacatcc
      961 atggggaagc ccttgcaagc cgtcgacaat agccgctttc ttgcctttcc ggacctcggg
     1021 ctttcgcccg ttgctctgca catcggtcca tttgacctgc gctggtacag tcttgcctac
     1081 ctcgccggca ttttcattgg ttattggtac ctcttgaagc tgttgaagca gcccggtgca
     1141 ccaatggcgc gccgccacgc ggatgatctt gtcttctacg ccgccttagg gatcatcctt
     1201 ggcggccgga tcggctacgt cttgttttac aatctcgccg agtatctgcg ccatcccatt
     1261 gagatactga agctgtggga cggcggaatg tcattccacg gcggcgtcgt tggtacgtcg
     1321 ctcgggatca tttattttgc tcggaaggag aagctgaact ggttgcggat ccacgattac
     1381 gtggcttgct gtgttccctt cggtctcttc ttcggaaggc ttgcgaattt cattaaccag
     1441 gagctctggg gagcaccgac gacggttcct tgggcgatac gcttcgtcga gcagactcca
     1501 ttcggcccga tgcttgggcc gccgcggcat ccaagccagc tctatgaggc atttctcgaa
     1561 ggcattctgc tctttgcgat tctcgccttc atgttctgga gaacgaaggc gcgttacgac
     1621 ccaggaaagc tcgtcggtac gttcctcttc ttttacggcc tgttccggtt cggcgtcgaa
     1681 ttcatcaggg agccggacca acagttgaga gcgtttgcgg aggcgaccca ccttcacatg
     1741 gggcagtggt tgtccctgcc gatgatcatc ggtgggctct acctcattgt cacgtccgca
     1801 ggtcggcgcg ttcgcgttga atcgaccgcg ggaaccgcat cggtcgcgtg acgccgttcg
     1861 agcgggcgct tcgcgagcgg atttcggccg aggggccaat cacgctcgaa gcctacatgg
     1921 aagcgtgcaa tgcttattat tatgcaacga gggatccgct cggggctgcc ggtgacttca
     1981 cgacggcgcc ggaagtcagc cagatgttcg gtgagttgat tggcgcagcc cttgccgatt
     2041 gctggaaaaa ggctggctcg cccgccgatg cgacttacgt ggaactgggt cctgggcgag
     2101 gcacgcttgc gagtgatgca cttcgcgtcc tgcgtcgcgc cggctttgga ggcgatgtac
     2161 atctcgtcga gaccagcccg ctgctgaagg acgcgcagcg gaaatcggta cctgatgcgc
     2221 attggcacga ggctcttgag gatgttccag caaagccatt gttgctcgtt gcaaacgagt
     2281 tcctcgacgc gcttccggtt cgccagcaca ttggtggaat cgaacgtcgc atcctcgttg
     2341 ccgcgggagg actggcgttc gaccgcgacg gcgaaatcat tgagacgtcg cctgcgcgag
     2401 acgacgtggt tcgcacgata gcctcgcgct gcaaggcaaa cggcggcgtc gctatcatcg
     2461 tcgactacgg ccatgcgcgc tccgctccag gcgacacgct tcaggccgtt cgaggccatc
     2521 gctttgctgc ggtactcgat cgtccaggcg agcaggacct cacgagccat gtcgatttcg
     2581 aaactctcgg gacgaccggc cggtcggccg gtgcactggt gacgcgcgta atcggccagg
     2641 gcgagtggct gaagcggctt ggaatcgaaa cgcgcgcggc ggttttgtcg catgcaaatc
     2701 ccgatcgccg agacgatctc aagtcagccg tcgaccgcct gaccgcaccc gaccagatgg
     2761 gagaactctt caaggtcgtt gcgctccact cggcgaaatg gccagcgccg gcaggtttta
     2821 gatgacagca agctttcgaa gcgcacgcgt cgaggatgcc gcggcgatct caaagatctt
     2881 tgaaacaagc ttctgcgaca cgttcggcca tctctaccgc gccgccgacc tcagtgcgtt
     2941 cctctcggct cattcgatcg acacgtggga acggcagctt cgcgatccgg ctttcgcgtt
     3001 tcgcatcgcc gaggccgacg gcgaggctgt aggctatgtg aagctcggtc cggtcaaact
     3061 tccggtcgaa ccggcgggac ccgcaatcct ccttgatcag ctctacgtcc tcaaggaaca
     3121 tcacggcagc ggcattgctc atggactgat ggaatgggca gttgctgaag ccgaggcgca
     3181 gcgcgctcga gagatttact tgacggtcta cgtcgacaac catcgggcaa agcgtttcta
     3241 cgatcgttat ggatttgaag ccgttggacg gtacgatttc atggtcggca ctcacgccga
     3301 cgaaga
//
LOCUS       DASRBJ010000165         2177 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_372743,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000165 DASRBJ010000000
VERSION     DASRBJ010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372743"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            17..1843
                     /locus_tag="VE968_04710"
     CDS             17..1843
                     /locus_tag="VE968_04710"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HZU51159.1"
                     /translation="MIALLRDLLEPAIEARGGSVIKKTGDGVLAEFASVVEAVRCALE
                     IQREVASRNHASEQPIAFRIGINIGDVIVESDDIYGDSVNIAVRLESLAQPGGIMVSG
                     AVRDHVHDKLKLHFEDMGELSVKNIERPVHAFSIAMVSSDSAKKGNVGRSRRGAVALA
                     TTLGIGIASAGGWWRLNYVDVQGPPAAASVKNGLATEESDRKGERLSIAVLPFTNLSG
                     DPDKDYFVDGITESLTTDLSRALPGSFVVARGTAFTYKGRLAEGSQIARDLNIRYLLA
                     GSVLPDGNRMRVNARLIDAETDTELWAERFDNRRENVLEVQDQIVGRLSRAIGLKLID
                     IEAKRSERHGNPSAVDFVMRAQAIANRPTSRETMIEARALFQEALGYDADNVDALAGV
                     AMTYVFEVLNGYYHDGREQRLRDGHALIRRALELDSHHIVALKVHAALLRAEGKFEDA
                     IAASRAVIAQNPGEPWAYKEVGLSELYLGHFQQAIEWFEKAEQIGPRDPSRWIWLGAM
                     GRAQFSLDHIEEAIRLLRLSADANRNDFRAPAFLAAIYALSNRADEAALALAEALRVQ
                     PGITIKRLFDDWSVPLNATSPVYQQQHERIREGLRMAGMLAG"
     gene            2100..>2177
                     /gene="rpsU"
                     /locus_tag="VE968_04715"
     CDS             2100..>2177
                     /gene="rpsU"
                     /locus_tag="VE968_04715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011446475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HZU51160.1"
                     /translation="MQVLVRDNNVDQALKALKKKMQREGI"
BASE COUNT          459 a          630 c          685 g          403 t
ORIGIN      
        1 agacacgcat gcccgcgtga tcgcactgct gcgcgatctg ctggagcctg cgatcgaagc
       61 ccgtggcgga agcgttatta aaaagacggg ggacggggtt ttggcggagt tcgccagcgt
      121 ggttgaagcc gtacgctgcg cactcgaaat tcagcgcgag gtcgcatcgc gcaaccatgc
      181 cagtgagcag cccatcgcct tccgaatcgg gattaacatc ggcgacgtga tcgtcgagtc
      241 ggacgacatt tacggcgaca gcgtcaatat tgccgttcgt ctggaatcac tggctcagcc
      301 tggcggcatc atggtttcgg gggcggtgcg cgaccatgtg cacgataagc tgaagctgca
      361 cttcgaggac atgggcgaac tgtcggtcaa aaacattgag cgacctgtac acgccttcag
      421 catcgcaatg gtgagcagcg acagtgcaaa aaagggcaac gtcggtcggt cgcggcgcgg
      481 tgctgtcgcc ctcgcgacca cgctaggtat cggcatcgcg tctgccggcg gttggtggag
      541 gctgaactat gtggacgtgc aaggtccgcc ggcagccgct tcggtaaaaa atggtctcgc
      601 gacggaagaa agcgaccgca aaggcgagcg gctttcgatc gccgtgttgc ctttcaccaa
      661 tctcagcgga gatccggata aggactattt cgtcgacggc atcaccgaaa gcctgacgac
      721 cgatctttcg cgagcccttc ccggcagctt tgtcgtcgcc cgcggtactg catttactta
      781 caaaggccga ctggccgaag gaagccaaat cgcccgcgat ttgaacatac gttatctgct
      841 cgctggaagc gtgctgcccg acggcaatcg tatgcgagtc aatgctcggc tgatcgatgc
      901 cgaaactgac accgagctat gggccgagcg gttcgataat cggcgagaga acgttttgga
      961 ggttcaggat caaatcgtcg gccggctgtc ccgcgccatc gggctgaagc tcattgacat
     1021 cgaagcaaag cgaagcgaac ggcacggcaa tccgtccgcg gtcgatttcg tgatgcgcgc
     1081 tcaggccatc gccaaccggc cgacatcgcg ggagacgatg atcgaggcgc gagccctgtt
     1141 tcaggaggct cttggttacg acgcagacaa cgtcgatgcg ctagctgggg tcgcgatgac
     1201 gtatgtgttc gaggtgttga acggctatta ccacgacgga cgggagcagc ggttgcggga
     1261 cggccacgca ctcattcgcc gggcgctcga actcgactct caccacatcg tggcgctgaa
     1321 agttcacgct gccttgctgc gagcggaagg caagttcgag gacgcgatcg cagccagtcg
     1381 cgccgtgatc gcgcaaaatc cgggcgagcc gtgggcttac aaggaagtcg gtttaagcga
     1441 gctctatctc ggccatttcc agcaagccat cgagtggttt gagaaagccg agcagatcgg
     1501 acctcgggat cccagccgat ggatatggct cggcgccatg gggcgagccc aattctcgct
     1561 cgaccacatt gaagaggcga tccggctgct caggttatcc gccgacgcta accgcaatga
     1621 tttccgcgcg ccggcttttc tcgcggccat ttacgctttg tcgaaccgcg ccgatgaggc
     1681 cgcgctcgct ctggccgaag cgctgcgggt gcagcccgga atcacgatca aacgcctctt
     1741 cgacgattgg tccgtcccgt tgaacgccac cagccccgtt taccagcagc agcacgagcg
     1801 aatccgggag gggctccgga tggcgggaat gctggcgggg tagtgccggc accattatcc
     1861 atgcgcaccc gatgggtaga tgatgccgcg cgaaccaact cacatcatag ccggggaaca
     1921 caagagttgc aggcggcttg agtaggggat ggcggttgga gttcgtgacc gccggcggcc
     1981 cctcaaccgg caaaacgatg gacttcggaa cccgtttctg gtaaagccgc gcgactcgat
     2041 agcccgcatt tgcgggcctt ttgtgttgaa ccccgtccgg ccacaacaaa ggagcacaag
     2101 tgcaagtact cgtacgcgac aacaatgtcg atcaagccct caaggcgctc aagaagaaga
     2161 tgcagcgcga gggcatt
//
LOCUS       DASRBJ010000166         2331 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_73672,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000166 DASRBJ010000000
VERSION     DASRBJ010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2331
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73672"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2227)
                     /locus_tag="VE968_04720"
     CDS             complement(<1..2227)
                     /locus_tag="VE968_04720"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HZU51161.1"
                     /translation="MAFDSICGSDSVDRRSQVGTTILDRHQGVVASLTRQLDWSASPL
                     GPPQNWPQPLKTVVDLMLASRQPMFIAWGPAQTWLYNDAFIPILGLKHPEALGIPAME
                     VWAEAREVLQPMFERVFDGEAVHMDDFGLLLDRRGKLEEAHFSFSYNPVRDEHGKVLG
                     LLGVCVETTVKVLAERQAVAERERLAKLFDQAPTFMAFLKGSDHRFEFANPSYLELVG
                     NREILGRTLADALPDAAEQGYLEILDRVFATGTPYRAVAAPFLNQPEPGGPVTERFVD
                     FVYQPILGVDGTPEGIFVQGADVTVRATAERRAHEQSEWRRAVDQLSLNFHELADPAD
                     IAYAAAEMLGKTLRVSRAGYGTIDPISETIVIDRDWNAPGIKTIAGTLRFRDYGTYID
                     DLKRGETAVVEDAYGDERTRETADALKAISAQSFVNMPVTEQDGFVALLYLNHHEPRR
                     WRSEELAFIREVAERTRMAVERRRAENELIALTATLEARVEERTAERDRVWRNSRDLL
                     AVIGADGIFRRANPAWRTILGYSASEVEGRSFLDLIWPEDASMTQEGLDRAASADDLT
                     AFENRYRHADGTPRWISWHTAVEGDLVYAYGRDITSQKEQATALENAQEALRQSQKLE
                     AMGQLTGGVAHDFNNLLTPIMGSLDMLQQRGVGGAREQRLISGALQSAERARTLVQRL
                     LAFSRRQPLKPRAVDVGELVRGLSELIGSTTGPQIRVVVDIAEDLPFAEADPNQLEMA
                     IL"
BASE COUNT          461 a          699 c          719 g          452 t
ORIGIN      
        1 tgagtatggc catctcaagt tgattgggat ccgcttcggc gaacggcagg tcctcggcaa
       61 tatcgacgac gacgcggatc tgtggaccag tggtgctgcc aatcagttcc gaaagtccgc
      121 ggaccagttc gccaacatcg acggcgcgtg gttttagcgg ttgccgacgc gaaaaagcca
      181 acaaacgctg gacgagagtt cgggcacgct cagccgattg gagcgcccca gaaatgagcc
      241 gctgctctct tgccccaccg acgcctcgtt gctggagcat gtcgaggctg cccatgatcg
      301 gcgtcagaag attattgaag tcatgggcaa cgccgcccgt gagctgcccc attgcttcga
      361 gcttctggct ttgccggagc gcctcttgtg cattctcaag ggcggttgcc tgttccttct
      421 gggacgtgat gtcgcggccg tatgcgtaaa cgagatcacc ttcgacagcg gtgtgccagg
      481 aaatccaccg gggggtaccg tcagcatggc ggtagcgatt ttcaaatgcc gtgaggtcgt
      541 ccgccgacgc ggcacggtcg agaccttcct gggtcatcga cgcgtcctcg ggccagataa
      601 gatcgaggaa gcttcgacct tcaacctccg acgcggaata accgaggatc gtccgccagg
      661 ccgggtttgc gcgccggaag attccgtccg cgccaatgac cgcgagaagg tctctggagt
      721 tgcgccagac gcgatcgcgc tcagccgtcc gctcctcgac ccgtgcctca agcgtcgcgg
      781 tgagcgcgat caactcgttt tcggcgcgcc gtcgctccac cgccattctc gtgcgctcgg
      841 cgacttcgcg gatgaaggcc aactcttcgc tgcgccagcg acgtggttcg tgatggttga
      901 ggtagagtag ggcaacgaac ccatcctgct cggtcaccgg catgttgacg aacgattgag
      961 cactaatcgc ctttagcgcg tcggcagttt cccgcgttcg ctcatcgcca taggcatctt
     1021 caacgactgc agtttcgccg cgcttcagat cgtcgatgta cgtgccatag tcccggaagc
     1081 gcaatgtgcc ggcgatggtc tttatgccgg gcgcattcca gtcccgatca ataacgatcg
     1141 tctcgctgat gggatcaatg gtaccgtaac cggcgcggct cacgcggagc gttttgccga
     1201 gcatttcagc cgccgcataa gcaatgtccg cagggtcggc gagctcatgg aagttcaagc
     1261 tcagctgatc gaccgcgcga cgccactccg actgctcgtg agcgcgacgt tccgctgttg
     1321 cccggacggt gacgtcggcg ccctggacga agatgccctc cggagttccg tcgacaccaa
     1381 ggattggctg atagacgaaa tcaacgaagc gctcggttac cggtccgccc ggctccggtt
     1441 ggtttagaaa aggggccgcg accgcccggt agggagttcc ggtggcaaag acgcggtcga
     1501 ggatttcgag atagccttgc tcggcggcgt ccggcagtgc gtccgcaagc gtgcggccga
     1561 ggatctcgcg attgccaact aactcaaggt aacttggatt ggcgaattca aaacggtgat
     1621 cgctgccctt caagaaggcc atgaaggtcg gcgcctggtc gaagagcttc gcgagccgct
     1681 ctcgctcggc gactgcctgc cgttcagcaa gcaccttgac cgtcgtctcg acgcaaacgc
     1741 ccagcaagcc aaggactttc ccgtgctcat cgcgcacggg attataggag aagctgaaat
     1801 gcgcttcttc aagcttgccc cggcgatcga ggaggagtcc gaagtcatcc atatggaccg
     1861 cttcgccatc gaacacccgc tcgaacatcg gctgaaggac ttcccgcgct tccgcccata
     1921 cttccatggc cggaattccc agtgcctctg gatgcttaag cccaaggatg gggataaacg
     1981 cgtcattgta gagccaagtt tgcgcgggtc cccaggcgat gaacatcggc tggcgggaag
     2041 caagcatcag atcgacaact gtcttgagcg gctggggcca gttctgagga gggcccaagg
     2101 gagaggcact ccaatcaagt tggcgcgtca atgaggcgac gacaccctga tgtcggtcaa
     2161 ggatggtcgt gccgacctgc gagcgacgat cgacggagtc gctcccgcag attgaatcaa
     2221 aggccatcga gcgggctcct gaggcaggac gcaggcgaat gagccgctcg tccaaaaatg
     2281 cgatcatagt caggagcggc gttcgagcaa acagccgtgg tcttgtagcc g
//
LOCUS       DASRBJ010000167         2042 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_479236,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000167 DASRBJ010000000
VERSION     DASRBJ010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479236"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..505)
                     /locus_tag="VE968_04725"
     CDS             complement(<1..505)
                     /locus_tag="VE968_04725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51162.1"
                     /translation="MLFVADPARAPESTDVIYARPDDRADNGATWRDHIARYNATPDV
                     NPFGLSTAYELYENETYRELVRRFGIGNTMILSAGWGLIPAGFLTPRYDITFSASAEP
                     YVRRRKHEAYEDFSMLPAGASEPIVFFGGREYVPLFAKLTAAAERRIVFYNSAIPPQA
                     PGCFVRRF"
     gene            588..1925
                     /locus_tag="VE968_04730"
     CDS             588..1925
                     /locus_tag="VE968_04730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51163.1"
                     /translation="MFGSTVGRCMEIRLLDFSVAGEFEWLWPSHNVERFERSWRGQIA
                     IDGAVFEFRHSLGHRHVYGKDRIHGVTWLAGAPMVEGVETDDYRSSRALLSLLRRDDK
                     KHARTNADIPEHYEDFLIVNHWEEIRAPYSPRSLAIKIVEDNVAAWATHAAIRAVMLR
                     RLPVSRQRKRSIPQPQILAPQPIDVEASPRKIVDALLAYGRGQARPLSEPSFAPTPDP
                     EANEFVTTNPLAFLLAVIADQGMPAERAWYLPYELNRRLGHFDPARMIADQAAIEAAV
                     NGPPALHRFPKKYAGWIISCAKRVMNQYEGDAARIWKGNLPAREVYERLDQFEGIGQK
                     KAAMAVEILERDLRVPISAMEGSDVAYDVHVRRVFLRTGLAQRDELDHIVAVARALHP
                     ERPGEIDMPTWLIGRQWCHAGTPDCGACPLNSTCPKIVSRVPLMPSPSPPHRA"
BASE COUNT          418 a          607 c          610 g          407 t
ORIGIN      
        1 ggaagcgccg cacgaagcag ccgggcgctt gcggtggaat ggccgaattg tagaaaacga
       61 tcctgcgctc cgccgctgcg gtgagcttgg caaagagcgg cacgtactct cgtccgccga
      121 agaacacgat cggttcgctc gccccagccg gcaacatgga gaagtcctca tacgcttcgt
      181 gcttccgccg gcgcacataa ggctcagcgc tcgcgctaaa ggtgatgtcg tagcggggcg
      241 taaggaaccc cgcagggatg agcccccagc cggcagacaa aatcattgtg ttgccgatgc
      301 cgaaccggcg cacgagctcg cgataggtct cgttctcgta gagctcgtaa gccgtgctaa
      361 gtccgaacgg attgacgtcg ggggtcgcgt tgtagcgggc gatgtggtcc cgccatgtag
      421 ccccattgtc ggcacggtcg tccgggcgcg catagatgac atccgttgat tctggcgcgc
      481 gcgccggatc ggccacaaac agcaccttct tgccgtccct cgcgcggaaa aaaaccggcg
      541 tcggacctct tgctcgccgc gcattgaatt aggacgatca ttgctcgatg ttcggatcaa
      601 cagtggggcg atgcatggaa atccggctcc ttgatttcag cgtagctggc gagttcgaat
      661 ggctatggcc gtcgcataat gtcgaaagat tcgagcgctc atggcgtggg cagatcgcga
      721 tcgatggagc cgtatttgag ttccgccatt ctctcggtca tcgacatgtt tatggcaaag
      781 accgcatcca cggtgtcacc tggctggcgg gcgcaccaat ggtcgagggc gttgagaccg
      841 acgactatcg ttcctctcgc gccctcctca gcttgcttcg tcgtgacgac aagaagcacg
      901 cccgaacgaa tgcagatatc ccggagcatt acgaagactt cttgatcgta aaccattggg
      961 aggagattcg cgcgccctac agcccgcgtt cgctcgcgat aaagatcgtg gaagacaatg
     1021 ttgcggcatg ggcgacccac gcggcaatcc gcgcagtcat gttgcggcgg ttgcccgtat
     1081 ctaggcaaag gaagcgctcg atcccgcagc cgcaaattct cgcgccgcag cccattgacg
     1141 tggaagcaag cccccgcaag atcgttgacg cactgctcgc atatgggcga ggccaagctc
     1201 gtccactttc ggagcccagc ttcgcgccaa ctcctgatcc agaggctaat gaatttgtca
     1261 cgacgaatcc cctggcattc cttcttgcgg tgattgccga tcagggcatg cctgccgagc
     1321 gagcatggta tctaccttat gagttgaacc ggcgattagg tcattttgat cctgcgcgca
     1381 tgatcgccga ccaagccgcc atcgaggcgg ccgtgaatgg tccacccgcc ttgcaccgct
     1441 ttccaaagaa atatgccggt tggatcattt catgcgcgaa gcgcgtcatg aatcaatacg
     1501 agggtgatgc agccagaatc tggaaaggaa acctaccggc tcgcgaagtc tatgagcgcc
     1561 tcgatcagtt tgaagggata ggccagaaga aggcggcgat ggccgtcgaa atcctcgaac
     1621 gcgatctacg cgtgccaatt tcagcgatgg aaggatcaga tgtggcgtat gacgtgcacg
     1681 ttcgccgggt ctttctcaga acgggtttgg cacaacgcga tgagttggac cacattgttg
     1741 ccgttgcgcg cgcacttcat cccgaaagac ccggcgaaat cgatatgccc acttggctga
     1801 tcggacgaca atggtgccac gctggaacgc ccgattgcgg cgcgtgccca ttgaactcga
     1861 catgtccgaa aatcgtttct cgagttccgc ttatgccgtc gccgtcgcca ccccatcgag
     1921 cctaacgcgc acggtggtcg cgccgttgcc ggcggcgtcg atcgcaatcc cgatcggata
     1981 gcgaccggtg ccgggcacgt tgacctgctt cgcgacgtcg tcccaggcga ctgcatcgcc
     2041 gg
//
LOCUS       DASRBJ010000168         4182 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_224640,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000168 DASRBJ010000000
VERSION     DASRBJ010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4182
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224640"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(111..1172)
                     /locus_tag="VE968_04735"
     CDS             complement(111..1172)
                     /locus_tag="VE968_04735"
                     /inference="COORDINATES: protein motif:HMM:NF026247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EpsG family protein"
                     /protein_id="HZU51164.1"
                     /translation="MTFYWLMFAAFALAALTSAPAIPQAVGPNAAYQEVRQRRSLKII
                     IAGLFLLVIIGLRYRVGGDWDNYELLLRTSQHQSFSELLHQRNEPAFAFLSWAAAQLD
                     FGIWFVNLFCALPFVWGLAQLSREQPNPWLALVIATPFLIIVVGMGFTRQAAALGFFM
                     AGLADYLRTGSLIRLVLLTLAGSLFHRTVLVLVPILVVAAGQSKVVSFALGVMACAFL
                     YIFVVLNTQQFYDRGYLNGRYEAAGASVRVLMNFIPAAILLWNRDALYISRREKVVWK
                     TLAILSVAAEGAIFVVSSVVVDRLAMYLIPLQLFVLGRLYLLASRDPMGRHMVPPRGT
                     LTDGPLHTCRVWKRGDGYR"
     gene            complement(1228..2214)
                     /locus_tag="VE968_04740"
     CDS             complement(1228..2214)
                     /locus_tag="VE968_04740"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HZU51165.1"
                     /translation="MNDQPGKLARTRASAGIAPQISVVAPVKDEENGIRPFVERVSEV
                     LEQVAGKQWEILFVDDGSNDETIAAIAAAHFSEPRVRALSLSRNFGKEAAITAGLEHA
                     RGQAVVPMDVDLQDPPEVLVEMVAKWREGYEMVFGVRRDRTTDSLPKRLTADLYYRAH
                     NRISNDKIPVNAGDFRLLDRKVVDAIRALPERNRFMKGLFAWAGFRQTSVEYDRAERN
                     AGKSKFNYWKLWTLALDGITAGSTVPLRVWSYLGAIVAVIALAYASFLFLDTLIFGNP
                     VPGYASIMVSVLFLGGVQLISLGVLGEYVGRILTETKQRPLYVIRDRIGFDD"
     gene            2317..3348
                     /locus_tag="VE968_04745"
     CDS             2317..3348
                     /locus_tag="VE968_04745"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HZU51166.1"
                     /translation="MKRITFVAADLSTGGGVNKVIRDLAVLFNERLGAEVTVVNARSD
                     APSTYAFPQDVRVLQHKAQSLPSYFRLLLRLRGSRPDFVIGSWTQDNILIVLAFLFSR
                     SKTVLIEHSSWHFHSWPVRLMRRVTYPLASCVVVLNRGDLDHYRAYLSNVRLIPDPVI
                     APSRAKQAREKLIITVGHLSPLKNFEDAIRAMAKSGLESDGWSLAIIGSGSSEPGLRR
                     LIDELGLTRTHICPPVENLASWYGRASLLLVTSHLESFSLVLAEAMLSGVVPIAYASD
                     GPSFILEDFPDHLVEIGDVQGLASRLVRFANEPNSESLRGALRSSIQCRFSPEIIVEQ
                     WRELLEACQ"
     gene            3372..>4182
                     /gene="dapE"
                     /locus_tag="VE968_04750"
     CDS             3372..>4182
                     /gene="dapE"
                     /locus_tag="VE968_04750"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HZU51167.1"
                     /translation="MESPIDPVELARELIRCPSVTPASGEVFDVIERPLKALGFEVHR
                     WVMGEPPDGPTENMVAIRGAGSPHFGFAGHLDVVPPGEGWTGDPFDARIEDGLLVGRG
                     ANDMKSAIASYVAALSRLGETPGTLSLLITGDEEGYSTYGTPRIIDWLNERQIRPDMI
                     LIGEPTSVDRLGDTVKIGRRGSVNMWIDVPGVQGHVAYPHRATNPIPPLARLIAALDS
                     LHLDEGTESFPPSNLEFTGIDTPTHASNVIPGSATAQLNIRFNNLHSGADLV"
BASE COUNT          867 a         1342 c         1201 g          772 t
ORIGIN      
        1 ccaagcgcgc aatccgcggc caagggcggt agtcgcgctt caaaagaagg cggcgtatcg
       61 ggcgagatag ccggcggccc agacagacgc aaaagcgatc acgaggcctt tcaccggtaa
      121 ccgtcccccc ttttccaaac ccgacacgtg tgtaaaggtc catcggtcag cgtgcctcgg
      181 ggcggcacca tgtgtcgccc catcggatcg cgcgaagcca acaggtagag ccttccgagc
      241 acaaacaact gcaatggaat caggtacatt gctaatcgat cgacgacgac ggacgaaacg
      301 acgaatatcg ccccttcagc cgccactgat aatatagcga gggtcttcca aacgaccttc
      361 tctcgccgag atatataaag tgcgtctctg ttccacagta ggatcgccgc ggggataaaa
      421 ttcatcaaga ctctaacgct cgcaccggca gcttcatacc gtccatttag gtacccgcga
      481 tcatagaatt gctgcgtatt caacacgacg aatatgtaga gaaatgcgca ggccatcacg
      541 cccagcgcaa atgagacgac tttgctctgg cctgcagcga ccactaggat tggaaccaac
      601 acgaggactg tgcggtggaa caacgagcct gctaaagtca gcaagacgag gcgaatgagt
      661 gaaccggttc ggagataatc cgccaatcca gccatgaaga agccgagggc agcggcttgc
      721 cgcgtgaacc ccatacccac aacaatgatt aggaatggcg tggcaataac taaggcaagc
      781 cacggattgg gctgttcgcg ggataattgc gctaaccccc agacgaaggg caaagcgcaa
      841 aataggttta cgaaccagat gccgaaatcg agctgcgcag ctgcccaact gaggaatgca
      901 aaggcgggtt cgttccgctg gtgaagcagc tcactgaaag actggtgttg ggaggttctg
      961 aggagcagct cgtagttatc ccagtctcct ccgacacggt accgcaagcc aatgatcacc
     1021 agcaggaaca gacccgcgat aatgatcttc aatgatcgac gctgccgcac ttcctggtaa
     1081 gccgcgttcg gcccaacagc ctgcggaatg gctggagccg aagtcaacgc tgcaagcgca
     1141 aaggcagcga acatgagcca gtaaaacgtc atcagtgagg cgagcggacg ctaccggatc
     1201 acttgctaaa cgaacagggg ccgtaggtta gtcgtcgaaa ccgatgcgat cgcggatcac
     1261 gtagagcggg cgctgcttcg tttcggtgag gatgcgaccg acatactcgc caagaactcc
     1321 gagggaaatc agctgcactc caccgaggaa cagtaccgag accatgatcg aggcatagcc
     1381 cggaaccggg tttccgaaga tcaacgtgtc caggaagagg aagctcgcat aagccaaggc
     1441 gatcacggcg acgatcgctc ccaggtagct ccaaacgcgc agggggacgg tcgacccagc
     1501 cgttatgccg tcgagcgcga gcgtccacag cttccagtag ttgaacttgg atttgccggc
     1561 attccgctcg gcccggtcat attcgacgga tgtctggcgg aagcccgccc aggcgaacag
     1621 ccctttcatg aaccggttgc gctccgggag cgcgcggatt gcgtccacca ccttgcggtc
     1681 gagcaaccgg aagtcgcccg cattgaccgg aatcttgtcg ttcgagatgc ggttgtgcgc
     1741 ccgataataa agatcggcgg tcagccgctt cggcagggag tcggtggtgc ggtcgcggcg
     1801 cacaccgaag accatctcat agccctcgcg ccacttggcg accatttcga cgaggacctc
     1861 cggcgggtcc tgcaggtcga cgtccatcgg caccacagcc tgccctctgg cgtgttcgag
     1921 gccggccgtg atcgccgcct ccttgccgaa attccgtgac agggagagcg cacggactcg
     1981 cggttcactg aaatgcgccg ctgcgatggc tgcgattgtc tcatcgttgc tgccatcgtc
     2041 gacgaacagg atttcccact gctttcccgc gacctgctcg aggacctctg aaacgcgttc
     2101 gacaaaagga cggattccat tctcctcgtc cttcaccggc gcgacgaccg aaatctgcgg
     2161 cgcaatgccg gccgaagcgc gggtccttgc gagcttgcca ggctgatcgt tcaaccgtct
     2221 tccttccccg tcacacgccc gctttcaatg cgtgactgga aatgtaccag cggaaatact
     2281 gatgcgtcga gcgaaccttt cgtccagggt cccagcatga aacgcataac cttcgtcgcg
     2341 gcggacctgt cgaccggcgg cggggtgaac aaggtcattc gcgacctcgc cgtgcttttc
     2401 aacgagcgcc tcggcgccga agtgactgtc gtgaatgcgc ggagcgacgc gccttcgacc
     2461 tacgcctttc ctcaggacgt gcgtgtgctg cagcataagg cgcagtcact gccgtcctac
     2521 ttccgattgc tgctgaggct gcgaggctct cgacccgatt tcgtgatcgg ctcctggacc
     2581 caggacaaca tcctgatcgt cctcgcattc ctgttttccc gctccaagac cgtgctcatc
     2641 gagcactcct cctggcattt ccactcctgg ccggtccggc tgatgcggcg ggtcacttat
     2701 cctctcgcct cttgtgtcgt cgtactgaac cgcggcgatc ttgatcacta tcgcgcttac
     2761 ctcagcaatg tgcgcctgat ccccgaccca gtgatcgcgc cgagtcgggc aaagcaggca
     2821 cgtgagaagc tgatcatcac cgtcgggcac ctctccccgc tcaagaattt cgaagacgcg
     2881 atccgcgcaa tggccaagtc agggctggag agtgatggct ggtcgctcgc aatcattggc
     2941 tcgggcagca gcgaacccgg cctgcgccgt ctaattgatg agctcggcct cactcgcacg
     3001 cacatctgcc cacccgtaga gaatctcgcc tcctggtatg ggcgcgcctc gctcctgctc
     3061 gtcacgtccc acctcgagag cttctcgctc gtgcttgccg aagccatgct ctccggagtc
     3121 gtaccgatcg cctatgccag cgacggtcca tcgttcatcc tcgaggactt ccctgaccat
     3181 ctggtggaga tcggcgatgt gcagggcctt gcgagccggc tcgtccgctt cgcaaatgag
     3241 ccgaactcgg aatcattgcg cggggcattg cgctcatcga ttcaatgccg cttctcgccc
     3301 gagatcatcg tcgagcagtg gagggaattg ctcgaagctt gccagtgacg ggagcgttgc
     3361 tagggcgaga catggaatcg ccaatcgatc ccgttgagct cgcccgcgag ctgatccgct
     3421 gtccgagcgt gacccccgct tcaggcgagg tcttcgacgt gatcgagcgc ccactgaaag
     3481 cgctcggatt cgaagtccat cgctgggtca tgggcgagcc gcccgacggc ccgaccgaga
     3541 acatggtcgc gatccgaggc gccggctccc cgcacttcgg cttcgcgggt caccttgacg
     3601 tcgttcctcc gggcgaaggc tggactggcg atccattcga cgcgcggatc gaggacgggc
     3661 tgctcgtcgg ccgcggcgca aacgacatga aaagcgcgat cgccagttac gtggcggccc
     3721 tttcccgcct cggcgagacc cccggcaccc tgtcgctgct catcaccggc gacgaggaag
     3781 gctattcgac ctacggcact ccgcggatca tcgattggct caacgaacgc cagatccgcc
     3841 ccgacatgat cctgattggc gagccgacgt ccgtcgaccg cctcggcgac actgtgaaga
     3901 tcggccgtcg cggatcggtc aacatgtgga tcgacgtccc gggcgtccag ggtcacgtcg
     3961 cctacccgca tcgcgcgacc aaccccatcc cgccgctggc gcggctcatt gcagctctag
     4021 attcgcttca cctcgacgag gggaccgagt ccttcccgcc atcgaacctt gagttcaccg
     4081 gcatcgatac cccgacccac gccagcaacg tgatccccgg ctccgcgacc gcgcagctca
     4141 acatccgctt caacaatctc cacagcggag ccgatctcgt tc
//
LOCUS       DASRBJ010000169         6226 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_224656,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000169 DASRBJ010000000
VERSION     DASRBJ010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6226
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224656"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            258..593
                     /locus_tag="VE968_04755"
     CDS             258..593
                     /locus_tag="VE968_04755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51168.1"
                     /translation="MQLLRNFLLAAAILSGLTGAPALADHPRAWRPPNGAPPPREQER
                     AWEATRDGRSMPLRMLERRVMPLMGGADYLGPELNGDTYRFKFLQNGRVIWVDVDGQG
                     RIIRRSSDR"
     gene            707..1372
                     /locus_tag="VE968_04760"
     CDS             707..1372
                     /locus_tag="VE968_04760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HZU51169.1"
                     /translation="MRVLIVEDEPNLGRQLRSTLEGAGYAVDLATDGEDGHYLGSTES
                     YDAIILDLGLPEIDGLTVLDRWRKEGRKMPVLVLTARDSWSDKVAGLDAGADDYLAKP
                     FQTEELIARLRALIRRSSGNASSELTAGDIRLDTRSGKVTKSGEPVKLTAQEYKLLSY
                     LMHHKGKVVSRTELIEHIYDQDFDRDSNTIEVFVTRIRKKLGPDVITTIRGLGYSLEE
                     PVS"
     gene            1468..2778
                     /locus_tag="VE968_04765"
     CDS             1468..2778
                     /locus_tag="VE968_04765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007163659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HZU51170.1"
                     /translation="MIVVAALWISALLLIGGVGLDRVLTRSIEDQFNSQLEFLLNSMI
                     YASEIGPDGEVRFNRPPADQRFIQPYSGLYFQISGAGMDTFPSRSLWDRRLRVSDTHA
                     DIKPHLYDTNEFGPNEPLRVAERDAILPGSNVRWRFQVAESRETINDQIHRLRSTLFW
                     SFLALGIGLVVLAALQTFYGLWPLRRVRDEVARIRSGDKTRISNEFPSEIRPLTEEIN
                     QLLAHNEAQAEEARRHAGNLAHALKTPLTVITNAATARAPDLADTICREALVMRRQVD
                     HHLARARAIGRRAAAQSRALVWESLEAVQRAVDRLHEGVTVDIAGDHHAQVRVERQDL
                     DEMLGNLVENAAKYGGGRVFVTVEAKGPVVDILIEDDGPGIPEERRGELFTRGARLDT
                     TGKPGTGLGLAIVRDVAEIYGGSIQLEESEDLGGLLARLTLPAG"
     gene            2874..4895
                     /locus_tag="VE968_04770"
     CDS             2874..4895
                     /locus_tag="VE968_04770"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HZU51171.1"
                     /translation="MRLRYLALAGTILVAASTVLPAAAPRYGTWGVETADMDKSVKPG
                     DSMFKFAEGTWLKKHAIPADKTGAGYNYELPDEIELQVRKMVEDVSANPTSPIARKIG
                     DAYAAWMDEAGIEQRGLAPLKPYLGRIDAVASRAQLVRLMMVPGFASPVDIGIAADQD
                     DPTRYTAVAEQGRLGLPGRDYYLLKGEKYDAIRAAYLKYIADLCRLAGLSDPEGRATR
                     ILALETRLAKDQWTPERRRDPVATHNPMTRAQLMKLAPQLNWSETLRQMGLGAAPKVD
                     VGEPSAVAAAGKRLADVPLSNWKEYLTFRFISDHANDLPKAFDDAHFGFYGKTMNDVP
                     EQRARWKRGIEMLDSSLGEAVGQLYVAKYWPDETARQAQELVDDMRAAYREKITNAAW
                     MDEATRKKALEKLATFDPRIGHPVKWIDYSTLKISRTDPLANAIATEDFEWKLELKRF
                     PHPVDRTLWDMTPQTVNAYYDPTMNQITVPAAILQPPFFDANADPAVNYGETGATTIG
                     HEMGHGFDDEGRQFDAKGRLRNWWTPATAAKYKVKAERLASQFDQYEPIPGVHIKGHL
                     TLGENLADLGGLETAYAAYRRYVARHGEPPLIDGYTGDQRFFIAFAQAWQGKQREGAL
                     RQQLLSNPHSPDQYRVDGIVRNFDPWYKAFNVQPGDKLYLPPDERVHVW"
     gene            5019..>6226
                     /locus_tag="VE968_04775"
     CDS             5019..>6226
                     /locus_tag="VE968_04775"
                     /inference="COORDINATES: protein motif:HMM:NF017464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase N-terminal
                     domain-containing protein"
                     /protein_id="HZU51172.1"
                     /translation="MSFKKLALATASLIAVSMPFAATAQKPVYGTWGYDTSAMDSSVK
                     PGDDFWSYVNGSWDKRTQIAADRASAGPFVTLADAAERDVRTIVEDESNNPNRDHLGQ
                     QIGDYYASFMDTNAIEAAGTAPLKPYLGEIAAAKTKAQLLSLFVKPGFASPVDIGIDA
                     DFHNPDQYAVFASQARLGLPSREYYLSDSDKMKAHRAAYRDYIITIEKLAGLPGGAAA
                     ADRIIALETALSKAQWPAADRRDIDKIYNPMTRAQLAKLAPQFDWNASLAKAGLGAAK
                     TVIVTEPSAVAGAGKILAATPLSTWKEWLAFRFVSDHANFLPKAFDDARFAFYSKELA
                     GVEQQRERWKRGVAAVNGALGEGVGEIYVKTHYPAESERQMKELIGNLEDAYRDRISN
                     NQWMDEATRKA"
BASE COUNT         1243 a         1920 c         1898 g         1165 t
ORIGIN      
        1 cctggatgag cccgagttgt tcgtaggata agatcggcgc ggccatcgcg gccgcttagc
       61 gaagccttgg ccgtcgcatc aatgcgatag tgcggttcgt cgcgcttatg tccgtcgcac
      121 gttatcgaga agcatgcgca cagcgctcaa ttatcgcttg ggcgtgatcg ccaggccgct
      181 gaaccccgta caacgtgcgc attcatagcc tattcaatgc ctgctgatac aacgcgaaac
      241 gaacaaaaga atcggccatg caattgctgc gtaattttct tctcgccgct gcgatcttga
      301 gcggcctcac cggggctcct gccctggccg atcatccgcg tgcctggcgg ccacccaatg
      361 gcgctccgcc gccgcgcgag caggaacgtg catgggaagc gacacgcgat ggccggtcaa
      421 tgccgcttcg aatgcttgaa cgtcgcgtga tgcccttgat gggcggcgcc gactatctcg
      481 gcccagagct caacggcgac acctatcgtt tcaagttcct gcagaacggc cgcgtgatct
      541 gggtcgatgt ggatggccag gggcggatca tccgccgctc aagtgatcgc tgaactttga
      601 aaggttcgga ttgacattcg ccctcctctc cccagttgtt tcgcacaagc aacctctcgc
      661 cccaacacgg gttgacggcg aagatgaaca gatccgggga gacggaatgc gcgttctgat
      721 cgtcgaagac gaacccaacc ttggtcggca gctgcgctcg acgctcgagg gcgcgggcta
      781 tgccgtggac ctcgcgaccg atggcgagga tggccattat ctcggatcga ctgagagtta
      841 cgacgccatc attctcgatc tcggacttcc cgaaatcgat gggctgacgg tccttgaccg
      901 ctggcgcaag gagggccgga aaatgcccgt cctcgtcctt accgcgcggg acagctggtc
      961 cgacaaggtc gccggcctcg atgccggcgc cgacgattat ctcgcaaagc cgttccagac
     1021 cgaggagctt attgcgcggt tgcgggcgct tattcgccgt tcctctggga atgcctcaag
     1081 cgagcttacg gcaggcgaca tccggctcga cacgcgctcg gggaaagtca ccaagtcggg
     1141 tgagccggtg aagctcacgg cgcaggaata taagcttctt agctatctca tgcatcacaa
     1201 gggcaaggtc gtcagccgaa ccgagctcat cgagcatatc tacgaccagg attttgatcg
     1261 cgactccaac accattgaag tgttcgtgac gcgcatccgg aagaagcttg gcccagacgt
     1321 catcacgaca atccgtggtc ttggctactc gctggaggaa ccggtcagtt gaatgctgaa
     1381 agccccgcgg ctcccgccgc ggcggcggac gagcgcgccg agcgaaggct gaagcgcggc
     1441 cagcgttcag gctccctttc gcgccgaatg atcgtcgttg cggcgctgtg gatctcagca
     1501 ctgctcctca tcggcggcgt tggtcttgac cgcgtgctta cgcgctcgat cgaggaccag
     1561 ttcaacagcc agctcgagtt ccttctcaat tcgatgatct acgcatcgga gatcgggccg
     1621 gacggcgaag tgcggttcaa tcggccaccc gccgaccagc gcttcatcca gccttattcg
     1681 gggctttatt tccagatcag cggcgccggc atggacacgt ttccgtcgcg ttccctgtgg
     1741 gaccggcgcc tgcgcgtgtc cgacactcat gcggacatca agccacatct ttacgatacc
     1801 aacgaatttg ggccgaacga accgctgaga gttgccgagc gcgacgcgat tcttccgggc
     1861 tcgaacgtgc gctggcgttt ccaggtcgca gaatcgcgcg aaacgataaa cgaccagatc
     1921 caccggctgc ggtcgaccct gttctggagt tttcttgccc ttggcatcgg gcttgtcgtt
     1981 ctcgccgcgc tccagacatt ctatggtctc tggcccttgc gccgcgtccg cgatgaagtg
     2041 gcgagaatcc gctcgggcga caagacacgc atcagcaacg aattcccgtc ggagatccgg
     2101 cccctgaccg aggagatcaa ccagctcctg gcgcataatg aagcccaagc cgaagaagcg
     2161 cggcggcatg ccggcaatct cgcgcatgcg ttgaagacgc cactcacggt cattaccaat
     2221 gcggcaacgg cgcgcgcgcc cgatcttgcc gataccatct gccgcgaagc actggtgatg
     2281 cgccggcagg ttgatcacca tcttgcccgc gcgcgtgcga ttgggcggcg agccgcggcg
     2341 cagtcccgtg cgcttgtctg ggaaagcctt gaagcggtgc agcgcgcggt cgatcgcctg
     2401 cacgaaggag tgacggtcga cattgcgggc gaccatcatg cgcaggttcg cgtggaacga
     2461 caggaccttg atgaaatgct cggcaatctc gtcgagaatg ccgccaaata tggtggcggc
     2521 cgagtcttcg ttacggttga agcaaagggc ccggtcgtcg acatattgat cgaggacgat
     2581 ggcccgggga ttccggagga gcggcgcggc gagctcttta cccgcggcgc aaggctcgac
     2641 acgacgggaa agcccgggac aggtcttggc cttgcgatcg tgcgcgacgt tgccgaaatc
     2701 tacggaggat cgatccagct tgaggaaagc gaagatcttg gcgggcttct tgcgcgcctc
     2761 acgcttcccg ccggctaggg ccccatcgac gtccttttgt cgaaaatgct gttccttcga
     2821 taagttggct cgatagggtc tcatcactcg aatcgcggtt gggaaaaatt tctatgcgtt
     2881 tgcgttactt ggctctcgcc ggcaccattc tcgtggcggc atcgaccgtg cttcctgcgg
     2941 ctgcgccccg ctatggcacc tggggtgtcg aaaccgccga catggacaaa agcgtgaagc
     3001 ctggcgacag catgttcaag ttcgccgaag gcacttggct caagaagcac gctattcccg
     3061 ccgacaagac tggcgccggc tacaattatg agcttcccga cgagatcgag ctccaggttc
     3121 gaaagatggt ggaggacgtc tccgcgaacc cgacctcgcc gatcgcccgc aagatcggcg
     3181 atgcctatgc cgcgtggatg gatgaagccg ggatcgagca acgaggcctt gcgccactga
     3241 agccctatct tggccgtatc gacgcggtcg caagtcgtgc gcagctcgtc cgtttgatga
     3301 tggttccggg tttcgcgtcg ccggtcgaca tcggcatcgc tgccgaccag gatgatccaa
     3361 cccgctacac ggcagtcgcc gagcaggggc gcctcgggct cccgggccgc gactattatc
     3421 ttctcaaggg cgagaaatat gacgcaatcc gcgccgccta tctaaaatat attgccgatc
     3481 tttgccgtct cgcgggcctg tcggatcccg aaggccgcgc aacgaggatc ctcgcgctcg
     3541 agacgcggct cgccaaagac cagtggactc ccgagcgacg ccgcgatccg gttgcgactc
     3601 ataaccccat gacgcgcgcg cagctcatga agcttgcgcc gcaattgaac tggtcggaga
     3661 cgctccgcca aatgggactt ggtgccgcgc cgaaggtcga tgttggcgag ccgagcgccg
     3721 tcgccgcagc gggcaagcga ctggcggacg tcccgttgag taactggaag gaatatctca
     3781 ccttccgctt catcagcgat cacgcgaacg atctgccgaa ggcgttcgat gacgcgcact
     3841 tcggctttta cgggaagact atgaacgacg tgccggagca gcgcgcgcgg tggaagcgtg
     3901 gcatcgagat gctggattcg agcctcggtg aggcggtggg ccagctctat gttgcaaaat
     3961 actggcccga cgagaccgct cggcaggcgc aggaactcgt cgatgacatg cgcgcggcgt
     4021 accgcgagaa gatcacgaat gccgcgtgga tggacgaggc gacgcgcaag aaggcacttg
     4081 aaaagctcgc gacattcgat ccgcgcatcg gtcacccggt caagtggatc gactattcaa
     4141 cgctcaagat cagccggact gatccgctcg cgaatgcgat cgcgaccgag gatttcgagt
     4201 ggaagcttga actgaagcgc ttcccgcacc ccgtcgaccg caccctgtgg gatatgaccc
     4261 cgcaaacggt gaacgcttat tacgatccga cgatgaacca gatcacggtt ccagcggcaa
     4321 tcctgcagcc gcctttcttc gacgccaatg ccgatccggc agtcaattat ggcgagaccg
     4381 gagcaacgac cattgggcac gagatgggtc acggctttga tgacgaaggt cggcagttcg
     4441 atgccaaggg acgcttacgc aactggtgga cgccggcgac ggccgccaaa tacaaggtca
     4501 aggccgaacg ccttgcttcg cagttcgacc aatatgagcc gatccctggc gttcacatca
     4561 agggacatct caccttgggc gaaaaccttg cggatcttgg cggcctcgaa accgcttacg
     4621 cggcctaccg gcgctatgtc gcacgccatg gcgagccacc cctgatcgac ggttatacgg
     4681 gcgaccagcg gttcttcatt gcgttcgcgc aagcctggca gggcaagcag cgcgagggtg
     4741 cccttcgcca gcagctcctc agcaatcccc actcacccga tcagtaccgg gtcgacggga
     4801 tcgttcgcaa tttcgatcct tggtacaagg cgttcaacgt gcagcccggc gacaagctct
     4861 acctgccgcc cgacgagcgc gttcacgtct ggtgattgca agcgcacgta accctttggg
     4921 caccggtcgg taacagccga cctttcgtcg aaaattcttg ccatggccga cttagttggg
     4981 gcatggcgtg cagctgttat ccggaggggt aaaaatccat gagtttcaag aagttggcgc
     5041 tcgccaccgc gagcttgatt gctgtttcca tgccgtttgc agcaacggcc cagaagccgg
     5101 tttacgggac ctggggctat gacacgtcgg caatggacag ctcggtcaag ccgggcgatg
     5161 atttctggag ctacgtgaac ggcagctggg acaagcgcac ccagatcgct gccgatcgtg
     5221 cttcggcagg accgttcgtg accctcgccg atgcggccga gcgtgacgtt cgcaccatcg
     5281 tcgaagacga gagcaacaat cctaaccggg accatctcgg tcagcagatc ggcgactatt
     5341 acgcaagctt catggacacg aacgcaatcg aggccgccgg caccgcgccg ctcaagccgt
     5401 atcttggcga gatcgcggca gcaaagacga aggcacagct cctctcgctg ttcgtgaagc
     5461 cgggttttgc aagcccggtc gacatcggca tcgacgccga cttccacaac ccggaccaat
     5521 atgccgtgtt cgcgagccag gcgcgccttg gtcttccgag ccgcgaatat tatctcagcg
     5581 acagcgacaa gatgaaggcg caccgcgccg cctatcgcga ctatatcatc accatcgaga
     5641 agcttgctgg ccttcccgga ggcgccgccg cggctgaccg gatcattgct ctcgagacgg
     5701 cgctttcaaa ggcgcagtgg ccggcggccg accgccgcga tatcgacaag atctacaacc
     5761 cgatgactcg cgcgcaattg gccaagctcg cgccgcagtt tgactggaat gcatcgcttg
     5821 cgaaggcggg acttggcgcg gcgaagaccg tcatcgtgac cgagccgtca gcggtcgccg
     5881 gcgcgggcaa gatccttgcg gcaacgccgc tttcgacatg gaaggagtgg ctcgcattcc
     5941 ggttcgtttc ggaccatgcg aacttccttc ccaaggcatt tgatgatgcc cgcttcgctt
     6001 tctattcgaa ggagttggcg ggcgttgagc agcagcgcga gcgctggaag cgcggcgttg
     6061 ccgccgtgaa cggagcgctc ggcgaaggcg tcggcgagat ctacgtcaag acccactatc
     6121 ccgccgaatc cgagcgccag atgaaggagc tcatcggcaa cctcgaggat gcctatcgcg
     6181 accgcatcag caacaaccaa tggatggacg aggcgacccg caaggc
//
LOCUS       DASRBJ010000170         5418 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_685157,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000170 DASRBJ010000000
VERSION     DASRBJ010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5418
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_685157"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..431
                     /locus_tag="VE968_04780"
     CDS             <1..431
                     /locus_tag="VE968_04780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HZU51173.1"
                     /translation="IALHVALLRPNRVGALVGIAAAPDFTHWGFEQEETAALRLNGRL
                     ERKGQYDGTAAFFTLAFYESAERLMLLHNPIEITCPVRLIHGELDEDVPHEVALRTMN
                     ALRSGDVQLNLIKGGGHRLSQPHEIETILRTVINLLERAP"
     gene            428..1165
                     /locus_tag="VE968_04785"
     CDS             428..1165
                     /locus_tag="VE968_04785"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZU51174.1"
                     /translation="MISVLLAAAMTGAPVNGSPTLITGTARHSSTECPELVTPDALVC
                     RALAAEKSGDTSAAAAAFEEAAKVSGDKEPKTARMWAAAGNLWIAAGNPARAAADLDK
                     SLALPWLEAQQRGEALLDRARAAEAQNDLATARAKLNEAGASISEDPFYWYFSASLAM
                     REGDHIAARNSIDRALKLAPTDPAILFEAGHVADYSGDDDQARIYWEQASAADPNGPI
                     GKDAAKAIEMLGVTPTVRTVPGPGQAR"
     gene            complement(1162..1794)
                     /locus_tag="VE968_04790"
     CDS             complement(1162..1794)
                     /locus_tag="VE968_04790"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HZU51175.1"
                     /translation="MAEHRTVTVRGVSERNVTADLATWTVHFSHQGTELGPVQESVDQ
                     QARMTRLFFERSGFRPEEVSDSEVSLSREQPKDRDGKPAGPQRLTVSRSVQLRTSDVM
                     RARRAYAQQAQLLRDGVELSGTTITYTFTRLNALKPEMIGEANRNARLSAEQFAQDSG
                     AEVGRIKTASQGYFSVGPRDGEECEECNASGGNSPFQKVRVVTTIDYDLR"
     gene            2017..2433
                     /locus_tag="VE968_04795"
     CDS             2017..2433
                     /locus_tag="VE968_04795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HZU51176.1"
                     /translation="MKFLHTMIRVSDPDSTVAFFQLLGLEERRRMENEAGRYTLIFLG
                     VPGDGGGEVELTYDWGESGYAAGRNFGHLAYEVDDIYATCKRLMEAGVTINRPPRDGR
                     MAFVRTPDEISIELLQKGPALAPAEPWSSMANNGQW"
     gene            2427..3485
                     /locus_tag="VE968_04800"
     CDS             2427..3485
                     /locus_tag="VE968_04800"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016703 - oxidoreductase activity, acting
                     on single donors with incorporation of molecular oxygen,
                     incorporation of one atom of oxygen (internal
                     monooxygenases or internal mixed function oxidases)
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HZU51177.1"
                     /translation="MVGWPDRRFIELAGSEQPIVQAPMAGASGVELCIAAIRGGALGS
                     LPCAMLTPEAVVHQFAEVRSRIRGPVNLNFFCHNMPQDADESAWRALLAPYYEEYEVE
                     PARSLVLRRPFNHEMCLAVEHLKPDVVSFHFGLPEQALLERVKKSGAVVLGNATTVEE
                     ALRLEERGVDAVIAQGFEAGGHTGRFLGSAPEEAFGLFALLPQVVDAVDVPVIAAGGI
                     ADGRGVAAAFTLGASAVQLGTAYLHSPETPISEVHRARLAGGRTLFTNLMTGGLARGI
                     RGRLIDELGPVRSEAPPYPLASNALAPIRAAAEKAGEFGFGPMWAGQAAPLGHQMSAT
                     DLTRKLCADALAILERRS"
     gene            3496..4215
                     /gene="gloB"
                     /locus_tag="VE968_04805"
     CDS             3496..4215
                     /gene="gloB"
                     /locus_tag="VE968_04805"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004416 - hydroxyacylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019243 - methylglyoxal catabolic process
                     to D-lactate via S-lactoyl-glutathione [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HZU51178.1"
                     /translation="MQVVPVPAFSDNYLWLVHDDASGATAVVDPGDAAPVLAEATRRG
                     WAITHVWNTHWHPDHTGGNLAVKAATGAVISGPADENIPGRDVALREGDRILLGDIVG
                     EVIKVPGHTLGHIALIFNQQKMAFVGDTLFAMGCGRLFEGTPEQMHHSLQRLSALPAE
                     TRLFCAHEYTLANGQFAAHAEPDNHAIAERLAHVRQLRADGKITLPTSVAEERETNPF
                     VRATNAQTFAHLRAEKDSFRS"
     gene            4274..4684
                     /locus_tag="VE968_04810"
     CDS             4274..4684
                     /locus_tag="VE968_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51179.1"
                     /translation="MRTISVILAGAVLASCTAVPPAPTRSAEAQRDYALALAGKVPEA
                     PISCLPSYQAGDMKTIDDNTILFRQGSRRVWVAHMEGPCTGLGTGHYALVTRQFGGQG
                     LCRGDIAQVVDTLSRMPVGSCVFGEFTPYVSSRG"
     gene            complement(4681..>5418)
                     /locus_tag="VE968_04815"
     CDS             complement(4681..>5418)
                     /locus_tag="VE968_04815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HZU51180.1"
                     /translation="KIRARFGGRQKAWVSGGAPLNPEVGVFFQSLGITFLQGYGQTEA
                     APLISCNRPKVGIRLETVGPPVKNCEVRIADDGEIMVRGENVMKGYWRNPEETARVLR
                     DGWLATGDVGHFDEKGRIVITDRKKDLIVNDKGDNVSPQRIEGMLTLQPEIAQAMVYG
                     DRRPHLVALLVPDPEIADASDLFARLQRAVDRVNAELSVIEKVRRFVVADQQFTIENE
                     QLTPSMKIRRHVISSVYADRLNALYGR"
BASE COUNT         1072 a         1613 c         1644 g         1089 t
ORIGIN      
        1 ggatcgcgct tcatgttgcg cttttgcgtc cgaaccgtgt cggggcgctc gttgggatag
       61 ccgccgcgcc ggactttact cactggggct ttgaacaaga ggaaacggcc gcgcttcggt
      121 tgaatggtcg tcttgagcgc aaagggcagt acgatgggac agcagcattt ttcacgttgg
      181 cattttacga atctgccgag cggctcatgc tcctccacaa tccaatcgag atcacttgcc
      241 cggtacgttt gatccatggc gagctggacg aggacgtacc gcatgaagtt gctcttcgaa
      301 cgatgaacgc gcttcgttca ggcgacgtcc agctcaattt gatcaagggt ggcggtcacc
      361 ggctgtccca accgcacgag atcgagacga tcttgcggac ggtcatcaac ctactggagc
      421 gtgcgccttg atttcagtcc tgcttgctgc cgccatgacc ggcgcgccgg tgaacggctc
      481 gccgacacta atcactggca ccgcccggca ctcgtcgacc gagtgccctg aactagtcac
      541 tccggatgca ctggtatgtc gcgcgcttgc tgccgagaag agcggtgaca cgagcgccgc
      601 tgctgcggcg ttcgaggaag ctgcgaaggt atccggcgac aaagagccga agaccgcccg
      661 catgtgggct gctgccggta atctctggat cgctgccggt aatcccgcaa gggccgctgc
      721 ggacctcgac aagtctcttg cattgccttg gctcgaagcg cagcagcgcg gcgaggcgct
      781 gcttgaccgg gctcgcgccg ccgaggcgca aaatgatctc gcgaccgctc gcgcaaagct
      841 gaacgaggct ggcgcctcga ttagcgagga cccgttctat tggtacttct cagcctcgct
      901 ggccatgcgc gaaggcgacc atatcgccgc gcgtaactcc attgatcgcg cgctaaagct
      961 cgcgcccacg gaccctgcga tcctgttcga agctgggcat gttgctgatt acagcggcga
     1021 tgacgatcaa gcgcggatct actgggaaca agcgtccgcc gcggatccca atgggccgat
     1081 cggcaaggat gccgcaaagg ccatcgagat gcttggcgtg actccgacag taaggacagt
     1141 gcctggtccc ggtcaggcgc gttagcgaag atcataatcg atcgtggtca ccactcggac
     1201 cttctggaac ggcgagttgc caccagacgc gttgcattcc tcgcactcct cgccatcacg
     1261 tggacccacg ctgaaataac cttggctcgc cgtctttata cgtccgactt ctgcgccgct
     1321 gtcttgcgca aactgttctg cgctcaaccg cgcgttgcgg ttcgcctcgc cgatcatttc
     1381 tggctttagc gcattcaggc gcgtgaaggt gtaggtgatg gttgttccgg aaagctcgac
     1441 gccgtctcga agaagctgtg cctgctgggc ataagcccgg cgagcccgca tcacgtccga
     1501 cgttcgaagc tggactgaac gactaaccgt cagtcgctgc gggcctgccg gttttccgtc
     1561 ccggtccttc ggctgttcac ggctaagcga cacttcgctg tcactcactt cttcgggccg
     1621 gaagccggag cgctcgaaga aaaggcgggt cattcgagcc tgctggtcaa ccgactcctg
     1681 taccgggcca agctccgttc cctggtgcga gaaatggacc gtccaagtcg caagatcagc
     1741 ggttacattt cgctccgaca ccccgcgaac agtcaccgtt cggtgttctg ccatcttcga
     1801 gcgtcgaagg ccgtcgccga gcgcgtagcc actagttgtt aaccccaaac caaaaattgc
     1861 gaccgcgcac agcaggactg cgcggttgtc ctcgagtttc tggaccatgg gatgaacccg
     1921 tgcgttcgtc cgcttatacg ggcagccacc ggtcacaatc gccggtcagt gctgcgacga
     1981 accgtgcaat tatagcgatg aaatgagcag agtgaaatga aattccttca cacgatgatc
     2041 cgggtctccg atcccgattc cactgttgca ttttttcaac tgcttggact tgaggagcgg
     2101 cggcgaatgg aaaacgaggc cggccgttat acattgattt tcctcggcgt gccgggcgat
     2161 gggggcggtg aggtcgaact cacctacgac tggggcgagt cgggctatgc agccggccgg
     2221 aactttggtc accttgccta cgaggtcgac gacatttacg cgacttgcaa gcggctgatg
     2281 gaagcaggag tgacgattaa ccggcctccg cgcgacggca ggatggcatt cgttcggaca
     2341 ccggatgaaa tttcaatcga gcttttgcag aaaggcccgg cgctggcgcc cgctgagcct
     2401 tggtcatcaa tggcgaataa tggacaatgg taggttggcc ggatcgacgt ttcatcgaac
     2461 ttgccggctc cgagcagccg atcgtccagg cgccaatggc tggagcgagc ggcgtcgaat
     2521 tatgtattgc agcaataagg ggcggcgctc tcggatcgct cccttgcgcg atgctcactc
     2581 ccgaggccgt tgtccaccaa ttcgcggagg tacgttcccg gataagagga ccggtcaatc
     2641 tcaacttctt ctgccacaat atgccgcaag acgcggacga gagcgcatgg cgggcgctgc
     2701 ttgcacccta ttatgaagaa tatgaagtcg agccagcaag atcgctcgtt ctgcggcgcc
     2761 cgttcaacca tgagatgtgc cttgcggtgg agcacctcaa gccagatgtt gtaagctttc
     2821 acttcggcct gccggagcaa gcgcttctcg agcgcgtcaa gaaatccgga gccgtggtgc
     2881 ttgggaacgc aacgaccgtc gaagaagcac ttcggctcga agagcgcgga gtggacgccg
     2941 tcattgcgca aggtttcgag gctggtggcc atacgggccg attcttgggt tcagcgcctg
     3001 aggaagcgtt cggcttgttc gcgctccttc cccaagtcgt tgatgcggtg gacgtgccgg
     3061 tgattgcggc gggcggaatc gctgatggtc gaggtgtcgc ggcggccttc actctcggtg
     3121 caagcgcagt gcagctcggt acggcctatc tccattcacc ggagacgccg atcagcgaag
     3181 ttcatcgcgc tcggctcgcc ggcggccgaa cattgttcac caaccttatg acaggcggat
     3241 tggcccgcgg aatcaggggg cggctgatcg acgaactcgg gccggtaaga agcgaggcgc
     3301 ccccttatcc actcgcaagc aatgctcttg cgccgatccg cgcagctgcg gaaaaagcgg
     3361 gcgaatttgg ctttggtccg atgtgggctg gacaggccgc gcctctcggc catcaaatgt
     3421 ccgcgacgga tctcacgagg aaactctgtg ccgatgcgct ggcgatcctc gagcgacgga
     3481 gctagggaaa catcgatgca agtcgtgccc gttccggcat tcagcgacaa ttatctgtgg
     3541 cttgtccatg atgatgcgag tggtgccact gcagttgtcg atccaggcga tgctgcgcca
     3601 gtgctagccg aagcgacgag acgcggatgg gcgatcacac acgtctggaa cacgcattgg
     3661 caccccgacc acactggcgg gaatctcgcg gtgaaagccg cgacgggtgc cgtcatttca
     3721 ggaccagcgg acgaaaatat cccgggccgc gatgtcgcgc tccgcgaagg tgaccggatc
     3781 ctgcttggag acattgtcgg agaggttatc aaagttcccg gccatacgct tgggcatatc
     3841 gcccttattt tcaatcagca gaagatggcg ttcgtcggtg acactctttt cgcgatgggc
     3901 tgcggacggc tgttcgaggg aacacccgaa cagatgcatc attcacttca gcgactgagt
     3961 gctctgccag cggaaacgcg ccttttctgt gcccacgaat atacgcttgc gaatggccag
     4021 ttcgcagctc atgccgagcc ggacaatcac gcgatcgcag agcggctcgc tcatgttagg
     4081 caactccgcg ctgacgggaa aatcacgctg ccgacgagcg ttgccgagga acgtgaaacc
     4141 aatcccttcg ttcgggccac gaacgctcaa accttcgcgc acttgagagc cgagaaagac
     4201 agcttccgtt catgaacggg agcgctctgg aaaccctttc gggggtggaa tgacgattga
     4261 tcaggaggtc actatgcgta cgatctcggt catccttgca ggagcggtac tggcctcatg
     4321 cacagccgtg ccgccagcgc cgacgcgcag cgccgaagcg caaagagact atgccctggc
     4381 gctggccgga aaggtgccgg aggcacctat cagctgcctg ccaagctatc aggcaggaga
     4441 catgaaaacc atcgacgaca atacgatcct cttccgccaa ggcagcaggc gcgtctgggt
     4501 cgcgcacatg gaagggccgt gcacgggcct cggaacagga cattatgcgc tcgttacacg
     4561 acagttcggc ggtcagggac tgtgtcgtgg cgacatcgcg caggtcgtcg acacgcttag
     4621 ccgaatgccc gtcggcagct gcgttttcgg tgagtttacg ccatatgtaa gcagtcgcgg
     4681 ctagcggcca tagagcgcat taaggcggtc cgcatagacg ctcgaaatca cgtgccggcg
     4741 gattttcatt gatggcgtca gctgctcgtt ttcgatcgtg aactgttgat cggccacgac
     4801 aaagcgccgc actttctcga tcaccgagag ctcggcgttg acacgatcga ccgctcgctg
     4861 gagccgcgcg aacaggtcag atgcgtccgc gatctcggga tcgggcacga gcagggccac
     4921 aagatgtggc cgacgatcgc cataaaccat ggcctgcgca atctcgggct gaagcgtcag
     4981 catgccctcg atccgctgcg gcgaaacatt gtcgcccttg tcgttgacga tgagatcctt
     5041 cttgcggtcc gtgatcacga ttcggccctt ctcgtcgaag tgaccgacat caccggttgc
     5101 aagccatccg tctcttagga cccgtgcagt ctcctcggga ttacgccagt agcccttcat
     5161 aacgttctcg ccgcggacca tgatttctcc atcgtcggcg atgcggacct cgcaattctt
     5221 gaccggtgga cccactgtct cgagtcgaat gccaaccttg ggccgattgc agctgataag
     5281 cggcgcagct tcagtttgac cgtagccctg gaggaaagtg attccgagcg actggaagaa
     5341 aacgccgacc tccgggttga gcggtgcgcc gcctgacacc catgccttct gtcgtccccc
     5401 aaaacgggcg cggatctt
//
LOCUS       DASRBJ010000171         2567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_580780,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000171 DASRBJ010000000
VERSION     DASRBJ010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2567
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_580780"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1545
                     /locus_tag="VE968_04820"
     CDS             <1..1545
                     /locus_tag="VE968_04820"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-translocating pyrophosphatase"
                     /protein_id="HZU51181.1"
                     /translation="RNPAVIADNVGDNVGDCAGMAADLFETYVVTVGITMVSIALALG
                     GGDRDLLTRLMTLPLLIGGVCIITSIIGTYMVRLGSKGSIMGALYKGFWTATLLAIPA
                     IYGAFRLALGDNLNANIGGGGAGTPGAPTSAVAGMFSGMDLFYSSLIGLAVTALIVWI
                     TEYYTGTNYRPVQSIARSSQTGHGTNIIQGLAVSLEATALPTIVIIVGLIASYKLAGF
                     LGVAFAASAMLALAGMVVALDAYGPVTDNAGGIAEMSGLEEDVRTRTDALDAVGNTTK
                     AVTKGYAIGSAGLAALVLFGAYTADLREFGGQIGVTTDLDTLFSLSNPYVIVGLLLGA
                     LLPYLFGALGMTAVGRAGGAVVEEVRGQFRDNPGIMDGSVRPNYARTVDLVTRAAIRE
                     MIIPSLLPVLAPIVVYFVIGAVAGRENGLAAVGALLLGVIVSGLFVAISMTSGGGAWD
                     NAKKYIEDGNYGGKGSEAHKAAVTGDTVGDPYKDTAGPAVNPMIKITNIVALLLLAAL
                     AAHAAV"
     gene            1632..>2567
                     /locus_tag="VE968_04825"
     CDS             1632..>2567
                     /locus_tag="VE968_04825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HZU51182.1"
                     /translation="MPHAIQIHETGGPEVLKWEEVEVGEPGPGQVRLRQEAAGLNFID
                     VYHRTGLYPQKLPFIPGVEGAGIVEAVGSGVTNVTPGDRVTYASQIGGYAEVRLIDAE
                     RVVKLPYNISSEQAAAMMLQGLTARMLIRAIHKVKEGETILIHAAAGGVGLIVCQWAK
                     ALGATVIGTVGSDEKAELARAHGCDYPIIYTREDFASKVDQITGGRKLPVVYDSVGRE
                     TFMKSLDCLRPRGLMVTFGNASGPPEPIAPGLLSQKGSLFLTRPTLNNYIATRQELEE
                     SAKELFDVVASGKVKVEVRQRFDLKNAAEAHRALEA"
BASE COUNT          502 a          758 c          789 g          518 t
ORIGIN      
        1 cgcaaccctg ccgtcatcgc cgacaacgtc ggcgacaatg tcggcgattg tgccggcatg
       61 gccgccgatc tgttcgagac ctatgtcgta accgtcggca tcacgatggt ttcgatcgcc
      121 ttggcattgg gcggcgggga cagggacctg ctgacgaggc tgatgacgct gccgcttctc
      181 attggcggag tctgcatcat cacgtcgatc atcggcactt acatggtccg cctcggcagc
      241 aagggttcga tcatgggcgc gctgtacaag ggcttctgga ccgcgacgtt gctggcgatc
      301 ccagctatct atggagcgtt ccgactagcc cttggcgaca atctcaatgc gaacattggt
      361 ggcggaggcg caggaacgcc cggagcgccg accagcgccg tggccggcat gttctccggc
      421 atggacctgt tctactcaag cctcatcggt cttgcggtga ccgcgctcat cgtctggatc
      481 accgaatact ataccggcac caattatcgg cctgtccagt cgattgcgcg atcgagccag
      541 acagggcacg ggaccaatat cattcagggg ctcgccgtca gcctcgaagc gacagcgctt
      601 cccacgatcg tgatcatcgt cggcctaatc gcgagctaca agctcgccgg ctttctgggc
      661 gttgcgtttg ccgcatcggc aatgcttgca ctcgccggga tggtcgtcgc gctcgatgcc
      721 tatgggccgg tcacggacaa tgctggcgga attgccgaga tgtcgggcct cgaagaagac
      781 gtgcggacac gaacggacgc actcgatgcg gttggcaata cgacaaaggc ggtgaccaag
      841 gggtatgcga ttggctcagc cgggcttgct gcgctggtct tgttcggcgc ctacactgcc
      901 gatcttcgcg aatttggtgg gcagatcggc gtgaccaccg atctggacac actgttcagc
      961 ctgtcgaacc cgtacgtcat cgttggactg cttctcggcg cgctcctccc ctatctgttc
     1021 ggtgctctcg ggatgaccgc cgtcggaaga gcaggtggtg cagtcgtcga agaagttcgt
     1081 ggacagtttc gcgacaatcc cggcatcatg gatgggtcag ttcgaccgaa ttatgcgcgg
     1141 acggttgacc tcgttacgcg tgccgcaatt cgcgaaatga tcatcccgtc cctgcttccg
     1201 gtgcttgctc cgatcgtcgt ttacttcgtc atcggcgccg ttgccgggcg cgaaaacggt
     1261 ctcgctgcag tcggtgcctt gctacttggc gtcatcgtct cgggcttgtt cgttgcaatc
     1321 tccatgacgt cgggcggcgg cgcttgggac aatgccaaga aatatatcga agacggcaat
     1381 tacggcggca aaggctccga agcgcacaag gcggcagtca cgggtgacac cgtcggcgat
     1441 ccctacaagg acactgccgg accggccgtg aacccgatga tcaagatcac gaacatcgtt
     1501 gcactcttgc tgctcgcagc actagcagca cacgccgcgg tctgattttc gcaagcgttc
     1561 atctcaagcc ccgccgcggt cgcccacggc ggggcttttc ttttgccgag ttagagcgtt
     1621 gaagcggccg catgccgcac gcgatccaaa tacacgagac gggaggaccc gaagtcctca
     1681 aatgggaaga agtcgaggtc ggcgaacccg ggcccggtca ggtccgcctc cgtcaggagg
     1741 cggccggtct caacttcatc gatgtctacc atcgaaccgg tctctatccg cagaaattgc
     1801 cgttcatccc gggcgtcgag ggtgcgggca ttgtcgaggc ggtaggcagt ggcgtcacga
     1861 acgtcactcc cggtgaccgc gtaacttatg caagccaaat tggcggttat gccgaagtgc
     1921 gcctgatcga cgcggagcgc gtcgtaaaac tgccgtacaa tatctcgtcg gagcaggccg
     1981 cggcaatgat gctccagggg ctgaccgctc ggatgctgat ccgagcaatt cacaaggtga
     2041 aggagggcga aacaatcctg atccacgccg ccgcgggcgg cgttgggctc atcgtctgcc
     2101 aatgggcgaa ggcacttgga gcaaccgtca tcggcacggt cggcagcgac gaaaaggcag
     2161 agctcgcgcg cgctcatggc tgcgactatc caatcatcta cacgcgcgaa gatttcgctt
     2221 cgaaggtcga tcagataact ggcggacgaa agctgccggt tgtttatgat tcggttggcc
     2281 gcgaaacttt catgaaatcg cttgattgtc tgagaccgcg cgggctcatg gtgacgttcg
     2341 gcaatgcttc aggaccgccc gagccgattg cacctggcct gctgtcgcaa aaaggatcgc
     2401 tgttcctcac ccgtcctacc ttgaacaatt acatcgcgac gaggcaggaa ttggaagaga
     2461 gtgccaagga gctattcgac gtcgttgcta gcggcaaggt aaaagtcgag gtgcggcaac
     2521 gttttgacct caagaacgcc gcggaggccc atcgggcact cgaagca
//
LOCUS       DASRBJ010000172         6296 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_225132,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000172 DASRBJ010000000
VERSION     DASRBJ010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6296
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225132"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(101..1288)
                     /gene="rnd"
                     /locus_tag="VE968_04830"
     CDS             complement(101..1288)
                     /gene="rnd"
                     /locus_tag="VE968_04830"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016891 - RNA endonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HZU51183.1"
                     /translation="MRIHPLITKSDELKDIVDRFAQHPFIAVDTEFMRENTYWPDLCL
                     IQVASTDEAAAIDPKAEGIDLKPLLDLFVNNEDVLKVFHAGGQDLEIIHNLTGKVPHP
                     LFDTQIAAMALGHGEQIGYSNLIESLLGHSLDKGARFTDWSRRPLDKRQIDYAIADVT
                     HLATVFPRMVDKLKKTGRGDWLDEEMERLADPSSFAFEPQDAWKRLKLPSRNAAVLGR
                     LKALAAWRETEARSKNLPRGRIIKDDTLNEIVLHPPRTQDDLGRVRGLSAGWKVNDIG
                     ARLMSAIQNAKPLNQDEMPDREPKRPGLTKDAALVSDLLKLLLKIRAKESGVAARLIA
                     RSDDLEALAAGVRKNLNILSGWRYEQFGKDALDLVEGRLAFGIENGKLKMNRVASPEE
                     AHA"
     gene            1402..3177
                     /gene="aspS"
                     /locus_tag="VE968_04835"
     CDS             1402..3177
                     /gene="aspS"
                     /locus_tag="VE968_04835"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HZU51184.1"
                     /translation="MHAYRTHNCAELRLSNVGETVRLSGWVHRKRDHGHLLFVDLRDH
                     YGLTQIVTDTDSPAFQALDRVRLESVVTIEGDVVARSAETVNRSLATGEIEVRARHVT
                     VRSPAAELPMPVAGEQEYPEDIRLKYRYLDLRREQPHRNIMLRSAVIASIRRRMIEQG
                     FTEFQTPILTASSPEGARDYLVPSRVHPGKFYALPQAPQMFKQLIMVAGFDRYFQIAP
                     CFRDEDARADRSPGEFYQLDLEMSFVTQDDVFAAIEPVLSGVFEEFSDGRAVTPAGQY
                     PRIPYRESLLKYGTDKPDLRNPLLISDVGAHFKGSGFGLFSRIVDGGGVVRAVPAPNT
                     ASLSRKFFDDMNEWAREQGFAGLGYATRKNGEWGGPIAKNHGEEGMNRIAEEMRLGPD
                     DGIFFAAGKEEEAAKLAGIARTRVAEQLDLVEKDAFRFCWIVDFPMFEFNEEQQKIDF
                     SHNPFSMPQGEMEALETKNPLDILAWQYDIVCNGVELSSGAIRNHRPDIMYKAFEIAG
                     YTRDEVDTNFSGMINAFKFGAPPHGGSAPGIDRIVMLLADEPNIREVILFPMNQKAED
                     LMMNAPAPVLPTQLRELHIRIVEPS"
     gene            3243..3986
                     /locus_tag="VE968_04840"
     CDS             3243..3986
                     /locus_tag="VE968_04840"
                     /inference="COORDINATES: protein motif:HMM:NF015909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase"
                     /protein_id="HZU51185.1"
                     /translation="MIEREVSFAGSRPGGELSTALGALREHLSELQLPQIAHGRRAII
                     LFEGPQGSGKKLALRQLAAAFDPCHFIVYSTAYDRRDSSEGHWLARFWRQLPSAGNTA
                     IFFRSWYRRVLEDRVLGRTPEESIPRVFDEINEFEAQQRDYGTLLLKLYFDVSADVQE
                     QRLAQRRLSPWRSRLADADFIRADDVGYQHALEELRANTDTRWSPWRTIDADDEQQAA
                     LTALEAIAEAWSKAMPSEPPQLIKTPRVA"
     gene            complement(3983..4468)
                     /gene="greB"
                     /locus_tag="VE968_04845"
     CDS             complement(3983..4468)
                     /gene="greB"
                     /locus_tag="VE968_04845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013041366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HZU51186.1"
                     /translation="MTEAHPRLITPDGFARVRSEYEQLFAQERPKLVETIAWAAANGD
                     RSENGDYIYGRRRLREIDRRLSHLARIMKNAKIVDPASQTSRDEVRFGATVELADEDD
                     NRRILTIVGDDEGDAAAGKIGWSAPLARALVGARVADERTVRLPSGEKSYEVIAIRYP
                     D"
     gene            complement(4484..>6296)
                     /locus_tag="VE968_04850"
     CDS             complement(4484..>6296)
                     /locus_tag="VE968_04850"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HZU51187.1"
                     /translation="KDSSNYRFADYAAFVIANPDWPQTARMRLWAEKAMQPGENAPTV
                     LAFFASQKPVTATGWSRLADAYAASGQANLALDAARHAWSSPDLTSSDEQAIWSHYGS
                     SLTRADHDRRVDALLFAKKTSEAARLLSMTTPERSGSFAARIAMQEDSADAETRFQPL
                     ANSVARDAGLLMDRARYLRSKNAIAAAEQLAAREHNFTYKPADPQRFFELLIDLASDA
                     ADNRKWQTAYNIAIGIDDVLPEGAKVADQPIDVRDDYTSLAWLAGEVALDRIRDPASA
                     IAMFDRYAQAGKSLQVQTKGYYWAGRAALESGHLQDARNYFARAAAYPDLFYGQLALE
                     RLGRTVTAPSPVLPQFVTTQAQRDAFNNRRLVQAIKLLRQEGRTTDEALFIQALASAL
                     DNDTDRNLAVELSGELGRQDLAVWTSRMARVKGSTFYVRQAYPTLRAQIPSDLWSLAH
                     GISRQESSFDPYALSHAGARGMMQLMTGTAREEAAKMGVGFDSYRLLSDPSYNIMIGS
                     AYFRRILNDWNGSVPLAVAAYNAGSGNVRKWIERYGDPRDQVDMLKWIEAIPFGETRA
                     YVQRVIENSVVYDSMRQSPQQQAAIHVSRYLGKDRPA"
BASE COUNT         1201 a         1878 c         1899 g         1318 t
ORIGIN      
        1 cccttgcgcg gtgccgttaa cgggcggcat caccggctgc gcatcagccg gaaagctcaa
       61 gctcgccacg agcaagaggc tcgcgcaaac caccaatttt ctaggcatgc gcctcctccg
      121 gactggcgac acggttcatc ttgagcttgc cattctcgat gccgaacgcg aggcgtcctt
      181 cgacaaggtc cagtgcgtcc ttgccgaact gctcgtaacg ccaaccacta aggatattga
      241 ggttctttcg aacgccggca gcaagcgcct cgagatcgtc cgagcgtgca atgagccgtg
      301 ccgcaactcc gctctccttg gcccggatct tgagaagcag cttcagaaga tcgctgacga
      361 gggccgcatc cttggtcagc cctgggcgct tcggttcgcg atcgggcatt tcgtcttgat
      421 tgagaggctt tgcgttctgg atcgcactca tcaggcgagc tcctatgtca ttgaccttcc
      481 agccggccga gagaccgcgc actcggccga ggtcgtcctg agtccgcggg gggtgaagga
      541 cgatttcgtt gagcgtgtcg tccttgatga ttcggcctct tggaaggttc ttcgaccgag
      601 cctccgtctc gcgccatgcc gcgagcgctt tcaagcgtcc gagcacagcc gcgttgcggc
      661 tcggcagctt caacctcttc catgcatctt gaggttcgaa agcaaagctc gaaggatcag
      721 cgaggcgttc catttcctcg tcgagccagt cgcctcggcc cgttttcttc agcttgtcga
      781 ccatccgcgg gaacacggtc gcgagatggg tgacgtccgc gattgcataa tcgatctgcc
      841 gcttgtcgag cggccggcgg ctccagtcgg tgaaacgggc ccccttgtcg aggctgtgcc
      901 caaggaggct ttcaataaga ttcgagtagc cgatctgttc gccgtggccg agcgccatcg
      961 ccgcgatttg cgtgtcgaac aacgggtgcg gaactttgcc ggtgagattg tggatgatct
     1021 caagatcctg tccgccggca tgaaagacct tgagcacgtc ctcattgttc acgaacaggt
     1081 cgagcaacgg cttaaggtcg atcccttcgg ctttcggatc gatggcggcg gcctcgtcgg
     1141 tgcttgcgac ctggatcagg cacaggtccg gccaataggt gttctcgcgc atgaactccg
     1201 tgtccaccgc gatgaaggga tgctgcgcga agcggtcgac aatgtccttt agttcatcgg
     1261 actttgtaat cagtggatgg atacgcatga gtcttggagg tggctttagc ggcggcctcg
     1321 cgggttgaca aaacgctttg cgccagtgaa gcgcggcccg cgtttttcca ccacatttgc
     1381 tgtcagcgga cccacctcat catgcacgcc tatcgtaccc ataattgcgc cgaactgcga
     1441 ttgagcaatg tcggcgaaac ggttcgcctg tccggatggg tccatcgcaa gcgcgatcat
     1501 ggacatctgc tgttcgtcga ccttcgtgac cattacggcc tgacccagat tgtcacggac
     1561 acggattccc cggcgttcca ggcgctcgac cgagtgcgcc tcgagtcggt cgtcacaatc
     1621 gagggtgatg tcgttgcgcg ctcggcggaa acggtgaacc gaagccttgc gaccggcgag
     1681 atcgaggtgc gcgcgcgcca tgtcacggta cgatctccgg ctgccgaact gccaatgccc
     1741 gtcgccggcg agcaggaata tcccgaggac attcgcctca agtatcggta cctcgatctg
     1801 cgacgtgagc aaccgcaccg caacatcatg ctgcggtcag ccgtgatcgc ctcgataaga
     1861 cgaaggatga tcgagcaggg gttcaccgaa ttccagacgc cgatcctgac cgcgagttcg
     1921 cccgaaggag cacgcgacta tcttgtcccg agccgtgtcc atccaggcaa gttctatgcg
     1981 ctcccacagg cgccgcagat gttcaagcag ctcatcatgg tcgcaggctt tgaccgctat
     2041 tttcagattg cgccatgctt tcgcgacgag gacgcccgcg ccgatcgcag tccgggcgaa
     2101 ttctaccaac tcgacctcga gatgagtttc gttacccagg acgacgtgtt tgcggccatc
     2161 gagccggtgc tttcgggagt ctttgaggag ttttcagacg gccgagccgt tactccggca
     2221 gggcaatatc caaggatccc ctatcgcgaa tcgctcttga agtacgggac ggacaagcct
     2281 gaccttcgaa acccgttgtt gatcagcgat gtcggggcgc atttcaaagg ttcgggtttt
     2341 ggccttttca gccggatcgt cgatgggggc ggggttgttc gcgcggttcc tgctcccaac
     2401 accgcgagcc tttcacgcaa gttcttcgac gatatgaacg agtgggcgcg cgagcaggga
     2461 tttgccgggc ttggctacgc gacgcgcaaa aatggcgaat ggggcggtcc aatcgcgaag
     2521 aaccacggcg aggagggcat gaaccggatt gccgaggaaa tgcggcttgg tcccgacgac
     2581 gggatcttct tcgcggccgg taaggaagag gaagcagcaa agctcgccgg cattgcgcga
     2641 acgcgcgttg ccgaacagct tgatctcgtc gaaaaagacg cgttccgctt ctgctggatc
     2701 gtcgatttcc cgatgttcga gttcaatgaa gaacagcaga aaatcgactt cagccataac
     2761 ccgttctcga tgccccaggg tgaaatggaa gcactcgaaa ccaagaaccc gttggacatt
     2821 ctcgcctggc agtacgacat cgtttgcaac ggcgttgagc taagttcggg cgcaattcga
     2881 aatcatcgcc ccgacatcat gtataaggcg ttcgaaatcg ctggatacac gcgagacgaa
     2941 gtcgacacga acttctcggg aatgatcaac gcgttcaaat tcggggctcc gcctcacggc
     3001 ggttcggccc ccgggattga tcgcatcgtc atgcttcttg ctgacgagcc gaacattcgt
     3061 gaagtgattc tttttccgat gaaccagaag gccgaggatc tcatgatgaa cgcgccggct
     3121 cccgtactgc cgacgcagct tagggaactg catattcgga ttgtcgagcc gagctgacct
     3181 aaaataggtc ggtccttcga caaccgttgt gcccgccaca tattgcgtta atttcccatt
     3241 cgatgatcga gcgggaagtg agttttgccg gaagccggcc cggcggcgag ctatcgacgg
     3301 ccctcggggc tcttcgcgag cacctatcgg aattgcagct tccgcagata gcgcacgggc
     3361 ggcgggcgat cattctgttc gagggtccgc agggttcggg gaagaaactt gctctaaggc
     3421 agctcgcagc tgcattcgat ccatgccact tcatcgtcta ctcgaccgct tacgatcgcc
     3481 gggactcgag cgagggacac tggctcgcgc ggttctggcg ccagctgcca agcgcaggca
     3541 atacggcaat cttctttcgc agctggtacc ggcgtgtgct tgaggaccgc gttcttgggc
     3601 gcacaccgga ggaatcgatc ccgcgggtct ttgacgagat caatgagttc gaggcccagc
     3661 agcgtgatta tggaacgctt ctgctgaaac tctacttcga cgtcagcgcc gatgtgcagg
     3721 agcagcgtct tgcgcagcgc cgcctaagcc catggcgttc acgacttgcg gatgcggact
     3781 tcatccgcgc cgatgacgtc ggttatcagc atgctctcga ggaattgcgc gccaatacgg
     3841 acacgcgctg gtcgccgtgg cggacgatcg acgcagacga tgagcagcag gcggcgctga
     3901 cggcactcga ggccattgcc gaagcctggt ccaaggccat gccgtcggaa ccgccacagc
     3961 tcatcaaaac gccgcgcgtc gcttagtcgg ggtatcgaat agcgatcact tcgtagctct
     4021 tttcgccgct cggcaagcga acggtgcgct catcggcaac tcgagctccg accagcgctc
     4081 gggcaagagg cgcgctccac ccgatcttac cggccgcagc atcgccctca tcgtcaccga
     4141 caatcgtcag aatacgtcga ttatcatctt catcggccag ttcgacggtt gctccaaagc
     4201 ggacttcatc ccgcgaagtt tgacttgcgg gatcgacgat cttggcgttc ttcatgatcc
     4261 gcgcgaggtg cgaaagccgt cgatcgattt cacgcagacg tcttcgcccg tagatgtagt
     4321 ctccattctc ggaacgatcg ccattcgctg cggcccacgc aattgtctcg accagcttgg
     4381 gccgctcttg tgcgaacagc tgttcatact cgcttcgaac acgagcaaag ccatcgggcg
     4441 tgattaatcg tgggtgagct tccgtcatgc tcccaccggt ttatcaggcc ggtcggtcct
     4501 tcccaagata gcgcgacacg tgaatcgccg cctgctgttg cggtgattga cgcattgaat
     4561 cgtacacgac gctgttctcg attacgcgct gcacgtaagc gcgggtctca ccaaaaggta
     4621 tggcttcgat ccacttcagc atgtcgactt ggtcccgcgg atcaccgtag cgctcgatcc
     4681 acttgcggac gttcccactg ccggcattat aggcggcgac ggcgagcggc acactcccgt
     4741 tccagtcgtt gaggatgcgc cggaaatagg ccgagccgat catgatattg taggaggggt
     4801 cgctgaggag gcggtagctg tcgaagccaa cgcccatctt tgccgcttct tcacgcgccg
     4861 ttcccgtcat taactgcatc atgccgcgag ccccggcgtg gcttagcgca tagggatcga
     4921 acgagctttc ctgccggctt atgccgtgtg ccaatgacca gaggtcgctt ggaatttggg
     4981 cgcggagggt cggataggcc tggcgcacgt agaaggttga acctttgact cgcgccatgc
     5041 gcgatgtcca gacggcgagg tcctggcgcc cgagttcacc gcttagctcg accgcaagat
     5101 tccggtccgt gtcgttgtcg agcgcacttg cgagtgcctg gatgaacaag gcttcatcag
     5161 tcgtccgacc ttcctgccgt agcagcttta ttgcctgaac cagacgtcgg ttattgaacg
     5221 catcgcgctg cgcctgtgtc gtcacgaact gagggaggac aggggaagga gccgtcaccg
     5281 ttcttcccaa acgctcgagc gcaagctgcc cgtagaagag gtcgggatag gctgcggccc
     5341 gggcgaaata gttccgcgcg tcctggaggt gtccggattc cagcgctgct cggcctgccc
     5401 aatagtatcc ctttgtctgg acctggaggg atttaccggc ctgcgcgtaa cggtcgaaca
     5461 tggcgattgc gcttgccgga tcgcgtatac ggtcgagcgc aacctcccct gcaagccacg
     5521 caagcgaggt atagtcatca cgaacatcga tcggctgatc ggcgaccttg gctccttccg
     5581 gcaggacatc gtcgatccca atcgcgatgt tgtaggcggt ttgccacttc cggttgtcgg
     5641 cggcgtcact tgcaagatcg atcagcaact cgaaaaatcg ttgcgggtcg gcgggtttgt
     5701 aggtgaaatt gtgctcgcgg gcggcgagct gctccgcggc cgcgatagcg ttcttcgagc
     5761 gcaagtatcg cgcacggtcc atgagcaggc cagcgtcgcg agcgacgctg ttcgcgagag
     5821 gctgaaagcg agtctcggca tcggcggaat cctcctgcat ggcgatccgg gccgcgaacg
     5881 agccgctccg ctcaggggtt gtcatcgaga gcaagcgcgc cgcctcgctg gtcttcttgg
     5941 caaagagcag tgcgtcgact cggcgatcat ggtcagcgcg cgtcaggctg ctgccatagt
     6001 ggctccagat cgcctgttcg tcgctgcttg tgagatccgg agaactccag gcgtgacgcg
     6061 ctgcatcgag cgcgaggttc gcttggccgc tcgccgcata agcgtccgcg agcctcgacc
     6121 agccagtcgc cgtaactggc ttctgggaag cgaaaaacgc aagcacggtc ggcgcgtttt
     6181 cgccgggctg catcgccttt tcggcccaga ggcgcattcg cgcggtctgc ggccaatccg
     6241 ggttggcaat gacaaaggca gcatagtcgg cgaaccgata attgctgcta tccttg
//
LOCUS       DASRBJ010000173         4332 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_323095,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000173 DASRBJ010000000
VERSION     DASRBJ010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4332
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323095"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..340)
                     /locus_tag="VE968_04855"
     CDS             complement(<1..340)
                     /locus_tag="VE968_04855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51188.1"
                     /translation="MIIPGMFGQCVKQWAMPLEDGAAYLRSEGYRVDTIDVDGLSSSA
                     KNASIIAASLSQLLRSGERLLIIGYSKGMSDILETLALYPHAIPPGSAVVSLAGIVSG
                     TPLADHPAKLD"
     gene            complement(880..1497)
                     /locus_tag="VE968_04860"
     CDS             complement(880..1497)
                     /locus_tag="VE968_04860"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HZU51189.1"
                     /translation="MNILIVDDHAIVRAGLRRLLRGMFEGELLEAATGREALAVARSR
                     KLDLVLLDMNLPELGGLELLTRLASVAPTLPVLVLSMHAEPLYVTRALEAGARGYVSK
                     NIAPDELVSAIKQVASGGRYVEGELAQALVLNPAPAIEPLEQLTPRDLEIMRLLAQGR
                     GLSEIADALGLGYKTIANTCTQIKGKLGVNRTADLVRVAIEAGIC"
     gene            complement(1494..2780)
                     /locus_tag="VE968_04865"
     CDS             complement(1494..2780)
                     /locus_tag="VE968_04865"
                     /inference="COORDINATES: protein motif:HMM:NF027763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HZU51190.1"
                     /translation="MLLISASVYVLISWNAARSDLSAELAAAKSGGLQTVRSAFEDLP
                     RSDHPRRDLRQLVATFEGNRHLIAQVQDSSGRLLMSSNASMPREQAPRWFAALLHPDV
                     QPVAVTVPGASNEVLSLEPQPASDIAALWSTTRDATGVFALAAAVGLTLIYWIIRRAL
                     SPLIDLSNALAAIGASGYRERVEETGPPELRPLQSGFNAMAERLAEIDARNRALEAQL
                     LTIQDEERADIARDLHDEIGPHLFAVALDADMINRSLTRGDSHLIPEQIRSIQGAVSY
                     MQRQVRELIARLRPTRAAELGLEAAICDLIAFWQARQPDVEFAAELDQADANVPEPLR
                     DVIYHLVQEAVANALRHARTERLDIAVTATSHGVTAMVANRGVTKAAEGDLPGLGLAS
                     MRERVQAAGGILEIHRGAEGWTVAARFLKTGERLVA"
     gene            2959..>4332
                     /locus_tag="VE968_04870"
     CDS             2959..>4332
                     /locus_tag="VE968_04870"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU51191.1"
                     /translation="MVREQDRMKQYMLGISLWALAAGSPAIAQAQSDSPTAPPSNAST
                     QPGATPAATQQATANHQGAIVISGRRLDIARDSITPSLGASQYTFDREALEKQPGGTN
                     LSLNKSLLQAPGVTQDSYGVIHVRNEHANLQYRLNGVIVPESISGFGTTFDPRIASSI
                     QLITGTLPAQYGYRTAGVINFKTQTGTIGNGGEIGAYGGSFGWIEPSAMLRGSSGDFS
                     YFVSGSYLRNDIGIENPLPTKRAIHDRTTQYRPFAYVSDVLSDTSRLSLFAGSFIGHF
                     QIPDVTGVQQGFNVNGVDTYDAAKLDQNQREITHYGVASYQYAGDKLNLQVSPFIRYS
                     QTKFTTDPNMGDVILNGFADAARLSSLAAGVQADASEQIGADHTLRAGLFFQNEHTTS
                     KVVSTVLPANDCGTDPTCTIVASSDVPFAITDQGAKTGQLYGIYLQDEWKLTPTLTLN
                     YGGRFDVV"
BASE COUNT          913 a         1327 c         1261 g          831 t
ORIGIN      
        1 gatcgagttt ggccggatga tcggcaagtg gagttcccga cactattccg gcgaggctta
       61 cgaccgcgga tcccggaggg atcgcgtgtg gataaagagc gagtgtctct aagatatcgc
      121 tcatgccctt cgaatagccg atgattaaga gccgctcgcc cgaacgaagc agttgtgaaa
      181 gcgaggcagc gatgatgctt gcgttcttcg cgctgcttga gagcccgtcg acatcgatcg
      241 tgtcgacgcg gtagccctcg cttctcaaat atgctgcgcc atcttccaac ggcatcgccc
      301 actgcttgac gcattgcccg aacatccccg gaatgatcac gatgtgtagg ggcgccctat
      361 tactgcgagg tccaagtgac accgtgatcg acgctggcgc tccttctccg tcgagtggct
      421 gcaacgcatc accacaggag cggtgtaccg ggaactgcga accatgagcg acgtcaagcg
      481 cacagaagat ttgtcgaaat cgcgcgcgat catcgatcac acccgccaat tgcaccggca
      541 ccaagacggc cggcggaatt cgattgccgt cgcttagtcg atgctgatga gctcggcccg
      601 tcattaccaa agctgccgcg gcaccgaggc aggcactaac cacgatcaaa caagcatgcg
      661 tgatcaacga tcttttcgag cgaaaggaag acagacgcct caggcgagat ctcacgaaca
      721 accccgtcga atatggatcg actgcatttc gcaacagcga cccgcaactg cgaaaatcta
      781 gaggtaggac cgacgctgtc gcaacggtgc gagtcgtcta cccgccgcta gagcctgctg
      841 cggtactaag gcggggtacg tcgcgtgtta caagcccgat cagcagatac ccgcttcgat
      901 cgcaactcta acaaggtcgg cagtgcgatt gacgccgagc ttgcccttta tctgcgtgca
      961 cgtgttcgca attgtcttgt atccaaggcc gagtgcgtcc gcgatctcac ttagcccacg
     1021 cccttgggcc agaaggcgca tgatctcgag gtcacgcggc gtaagctgtt cgagcggctc
     1081 gatcgcggga gctggattga gcactagtgc ttgcgcgagt tccccttcga cgtatcggcc
     1141 gccggaggcg acctgcttaa tcgcgctcac cagctcatcg ggagcgatgt tcttgctgac
     1201 atagcctcgt gcgcccgctt cgagtgcgcg cgtcacgtac aagggttccg cgtgcatgct
     1261 caggacgagc accgggagcg tcggcgcgac gctagccaag cgggtcagca gttcaagacc
     1321 gccgagctcg ggcaagttca tatcgagcag cacaagatca agcttacgcg agcgggcaac
     1381 ggccaaggct tcgcggcccg ttgctgcctc cagcaattcg ccctcgaaca tcccgcgcag
     1441 aagccgacgc agccccgcac ggacgattgc atgatcatcg acgatgagaa tgttcatgcg
     1501 actagtcgct caccggtttt caagaagcgg gcggcaacgg tccacccctc cgcgccgcga
     1561 tggatctcga ggattcctcc agccgcttgc actcgttcgc gcatgctggc gagccccagc
     1621 cccggaaggt cgccttcagc ggccttcgtt acaccgcggt tcgcaaccat cgccgtaact
     1681 ccgtggctgg tcgccgttac ggcaatgtcg aggcgttcgg tcctcgcgtg cctcagggca
     1741 ttggcgacag cttcctggac cagatggtag atcacgtcgc gcaggggttc gggcacattt
     1801 gcatcggctt gatcgagctc tgctgcaaac tccacgtcgg gctggcgtgc ttgccagaat
     1861 gcaatgagat cacaaatggc agcttctagg ccaagctcgg ccgcgcgcgt cggacgaagc
     1921 ctcgcaatca actcgcgaac ctggcgctgc atgtagctga cggcgccctg aattgaccgt
     1981 atctgctccg gtatcagatg agagtcgcct cgggtgagtg atcggttgat catgtcggcg
     2041 tcgagcgcga cggcgaatag atgcggcccg atctcgtcat gaaggtcacg cgcgatatcc
     2101 gcgcgttctt cgtcctgtat ggtcaacagc tgcgcctcga gcgcgcggtt gcgggcgtcg
     2161 atttccgcaa ggcgctcggc catcgcattg aagccactct gcaacggccg aagctcaggc
     2221 ggacctgttt cctcgacgcg ttcacgatag ccgctcgctc caattgctgc caaggcgttt
     2281 gaaagatcga tcagcggcga cagcgcacgc ctgatgatcc agtagatgag ggtgagcccc
     2341 accgccgccg caagagcaaa gactcccgtt gcatcgcgcg tggtcgacca cagcgccgca
     2401 atgtcgctcg ccggctgtgg ttctaagctt agcacctcat tgctggcgcc gggaacagtg
     2461 actgcaaccg gttgcacatc cggatggagc aacgccgcaa accagcgagg tgcttgctcg
     2521 cgaggcattg aggcattcga gctcataagg aggcggcccg acgaatcttg tacttgcgcg
     2581 atcagatgcc ggttgccctc aaaggtcgcg acgagctgtc tgagatcgcg ccgtggatga
     2641 tcagatcggg gaaggtcctc gaaggccgac cggacagtct gcaatccgcc gcttttcgct
     2701 gcggcaagct cagcggatag atcgctgcgc gccgcgttcc acgaaatgag cacgtagacc
     2761 gaggcgctga tcaaaagcat cagcgccacc agagcgataa ctctcccgcg caacgacatg
     2821 gcggcctctt agcacggaga tttcgtgatc tttcatcatc ggtcagaaaa agggaatttt
     2881 tcccgacgat ttcgggaatt gttggcatgg ccgcggcatg atgtcggcct ccattggcac
     2941 atacgccaat taagacgcat ggtgcgggag caagacagga tgaagcagta catgttgggc
     3001 attagcctat gggctcttgc tgccggaagt ccggccattg cccaggcgca gtctgacagt
     3061 ccaaccgctc ctccttcaaa cgcgtcaact caaccagggg cgacgcccgc ggcaacgcag
     3121 caagcgaccg ccaatcacca aggcgcaatc gtcatcagcg gccgacgctt ggacatcgcg
     3181 cgagacagca tcacgccatc gttgggcgcg agccaatata ccttcgaccg cgaagccttg
     3241 gagaagcagc cgggcggcac caatctgtct cttaacaaat cgcttctgca ggctccgggc
     3301 gtaacccagg acagctatgg cgtgatccac gtgcgcaacg agcacgccaa tctccaatac
     3361 cggctgaacg gcgtcatcgt gcccgagagc atcagtggct ttggcaccac cttcgacccg
     3421 cggatagcaa gttcgatcca gctgattacc ggcacgctcc ccgcgcaata tggctatcga
     3481 acggcgggcg tgatcaattt caaaacgcag acgggtacca tcggcaatgg cggcgagatc
     3541 ggcgcttatg gtggaagttt cggctggatc gagcccagcg ccatgctccg aggatcctcg
     3601 ggtgacttca gctactttgt ctccggcagc tacttgcgaa atgatattgg gattgaaaat
     3661 ccgctgccga caaagcgggc gatccacgat cgaacgacgc aatatcgtcc atttgcttat
     3721 gtttcggacg tcttgtcgga cacgagccgc ctgtccctct ttgccggaag tttcatcggc
     3781 cacttccaga ttcccgacgt cacgggcgtg cagcagggat tcaacgtcaa cggcgttgat
     3841 acttatgatg cggcgaagct cgaccagaac caacgcgaga ttacgcacta cggtgtcgca
     3901 agctatcaat atgcaggcga caagctgaac ctgcaggtct cgcccttcat ccgctactcg
     3961 cagacgaagt tcacgaccga tcccaacatg ggggacgtga tcctgaatgg atttgccgac
     4021 gcggcccggc tgtcgagcct tgccgccggg gtccaggccg atgcgagcga gcagattggc
     4081 gctgatcata cgctgcgcgc cgggctattc ttccaaaacg agcacactac ctcaaaggtc
     4141 gtctccaccg ttcttcccgc gaacgattgc ggtaccgacc cgacttgcac catcgtcgcc
     4201 agcagcgacg ttccatttgc gatcacggac caaggggcaa agactggaca actctacggc
     4261 atttacctgc aggatgaatg gaaactcacg ccgacgctga cgctgaatta cggcggacgt
     4321 ttcgacgtgg tc
//
LOCUS       DASRBJ010000174         9672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_627050,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000174 DASRBJ010000000
VERSION     DASRBJ010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 9672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9672
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_627050"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..675)
                     /gene="mraY"
                     /locus_tag="VE968_04875"
     CDS             complement(<1..675)
                     /gene="mraY"
                     /locus_tag="VE968_04875"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HZU51192.1"
                     /translation="MLYVIAAQLHFAGFLNLIRYISFRAGAASATALLIGLLLGPKFI
                     TWLRKTQGKGQPIRTDGPQSHLAKRGTPTMGGLLILTSVMISVLLWMELGNPYVWACL
                     MVTAGFGVIGWLDDYDKVKKAHHAGLSGKTRLTLEFLIAGVASWIIVRTGGTGLHLPF
                     VKDTVLDLGVPLYVAFGAFVIVAFGNAVNLTDGLDGLATMPVIIASLAFVLLAYLVGN
                     AKFATYL"
     gene            complement(663..2048)
                     /gene="murF"
                     /locus_tag="VE968_04880"
     CDS             complement(663..2048)
                     /gene="murF"
                     /locus_tag="VE968_04880"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HZU51193.1"
                     /translation="MTALWTSAEIASATGGSATDAFDVNGVTFDSREVQPGDLFVAMP
                     GTVQDGHRFVEGAFAAGAAGALVSQPVGGPHVLVSDTFEALRALGCAARRRSRAKIVG
                     VTGSVGKTSTKEALFAALDRNRPGKVHRSVKSYNNHTGVPLSLARLPRDSEFAIFEMG
                     MNNAGEIRALTAQVRPHVALITAIAPAHIENLGSEEAIADAKAEIFESLEPSGIAIVP
                     NDTPHRDRLVKAARRYAERIITFGSGDADVHAVHAVSADGGGSLISAALLERELTFTI
                     SQRGEHWVSNSLAVLAAVEAVGADVARAGLALADLAGLKGRGQRHVIPIDGGEILLID
                     ESYNANPASMAATLQSLGQERDVARRIAVLGPMRELGEHSDALHAGLAPAVLSAKVDQ
                     LVLIGADMRPLEEELGGRATTLRVETVDEATKALRALVRPGDAVLVKASNSVGLAKLV
                     ECMAKELACST"
     gene            complement(2045..3460)
                     /locus_tag="VE968_04885"
     CDS             complement(2045..3460)
                     /locus_tag="VE968_04885"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HZU51194.1"
                     /translation="MKLRDIADVDSGLEVTGFAIDHRKVMPGSVFGAFKGAVFNGEDF
                     IGAAVERGAVAIVARPQAQSMSVPLLADAEPRRLFAEVAAKFYAPFPETVVAVTGTNG
                     KTSTVEMTRQMWRMSGKRSASIGTLGVTTADDQVTTGLTTPDIVTFLNNMAGLKRMGI
                     SHVAYEASSHGLDQHRAEGVPLSAAAFTNFSRDHLDYHGSMEAYFAAKMRLFDELLPP
                     GKPAVVWADDPKSDVVIERARRRGHELLTVGRRGETIRLVEQSPTALGQTLIVDYGGK
                     SHRLALPLIGAYQAANVLTAAGLVLATGLDWPSTFSAMQRVAPVRGRLERAVISRAGV
                     PVYVDYAHTPDALEAAIAALRPHVDGRLIVVFGAGGDRDQGKRPEMGRIAASLSDIVI
                     VTDDNPRSEDPARIRAEVMAGATGAREVPGRRQAIAEAIQSAREGDIVLVAGKGHETG
                     QIIGDTVLPFDDALVARECAA"
     gene            complement(3466..5193)
                     /locus_tag="VE968_04890"
     CDS             complement(3466..5193)
                     /locus_tag="VE968_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HZU51195.1"
                     /translation="MNAPSPALVAQRPERLRLVGQRRQLLAVMHQRLMFGMLVFAGMI
                     AIVALRILYLAAFGDHAGRKEELTTFVPERGDIVDRNGDPLARTIDAWTIAIHPNKVI
                     GDKLALAQRLAQLMPEHSAEQYFAMLRSGKPFFYLRRRASPELVDAVNAIGEPGLAIE
                     REPDRLYPQTSLAAHVLGFTDIDGHGAAGVERAFDKYLADPATRGAPLMLSIDSRVQQ
                     ALESELGEAMTHFSAIGAAGVIMDVHTGEVLAMTSMPTFNPNAPGRGTPDQMFNRATL
                     GVFELGSTFKPFTLAMALDSGVVSGPGQMLNCPLALPAYGHVIHDTHPFGRPCSVAEA
                     MMESSNIGLGQIADHLGKERQQAWLKKMGFLDKPQIELRERGRPLTPGSRWGPFETMN
                     IGFGQGIAVAPLQLAMGYATLFDDGVYHPPTILKIGAGHPLSPGKRIFTADTSYKMRA
                     LLRLVVKRGTGKKADAPGYRVGGKTGTASKVIGGHYSRTINLTSFAGVFPMDDPRYVI
                     VVMLDEPKPTKETYGFTTAGWNFAPVVSKTISRIAPMLGVVPDLNREPNMAEVLPYVQ
                     DAKQDAKKD"
     gene            complement(5190..5984)
                     /locus_tag="VE968_04895"
     CDS             complement(5190..5984)
                     /locus_tag="VE968_04895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51196.1"
                     /translation="MSSRSFRSVFMVASCAGAALSCYLVSLRVASERAQLEDVETKIV
                     LAQRDMRVLQTEIGTRGRLSQLERWNAGAFALAAPAADQFVKGGFELARLAAPDHKPD
                     FKAPVILASAPVQPKRPLLAEPETDDSGAPTAATPGALLRQASFKIDTREVPAPSAVP
                     LPRAAAKSKDQPAIAAKPAHKASIGKSGLAAAHSIKKPAAKRAAETADTARNLTQPTG
                     KKKTVDKARVVTAKALTKPVRVAKVDPLAPLPSRHFGNSKATSAER"
     gene            complement(5981..6937)
                     /gene="rsmH"
                     /locus_tag="VE968_04900"
     CDS             complement(5981..6937)
                     /gene="rsmH"
                     /locus_tag="VE968_04900"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016747709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HZU51197.1"
                     /translation="MTSAGADNAPHVPVLVSDVIRALAMHGGEIVVDGTFGAGGYTRA
                     ILAAGAAQVIGFNRDPDAIAAGRSFVEDPRLTLVEERFSQMDQVLARKGIGLVDAIAL
                     DIGVSSMQLDRPERGFSFQGDGPLDMRMSRSGLTAAEYLNSADEAEIARVLRDYGEEP
                     RARAIARAIVAARPLERTGELAAVVRRAAGFRPGQKSDPATRTSQAIRIHLNGELDEL
                     EQGLEAAERALKPGGRLAVVTFHSLEDRIVKHFLRERSGASPAGSRHRPAPTTTAEAT
                     FEKVAKPIAPSASELLVNPRARSARLRSAIRTSAPARKEVLQ"
     gene            complement(6934..7422)
                     /locus_tag="VE968_04905"
     CDS             complement(6934..7422)
                     /locus_tag="VE968_04905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HZU51198.1"
                     /translation="MALEHLFQGSALNAVDAKGRVSVPAFLRGVIERRGDARTIVLAK
                     HEAFPCLSAYDPAYASLKHAKLERLLEKEETSPDAQLEYQQRNLMAFAATEEVPYDSS
                     GRILFPPMMRRKGEIGDLALFLGTGETFQIWNPQLLLDDPRIPEDLKDIARFRLEERG
                     AA"
     gene            complement(7697..8416)
                     /locus_tag="VE968_04910"
     CDS             complement(7697..8416)
                     /locus_tag="VE968_04910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51199.1"
                     /translation="MRGRRALLLLLILLAVAIAIAFLVSDGTGNPPRLPSRRPKLLLL
                     TSLPIMFGEDFSLSGSGSPVIKRLQSRYKVVPISVTDASELAQGRLMLMAQPRAQTAE
                     NLVALDHWVRSGGHLLLLADPLLEWPSKFPLGDVARPLPVFMDSGLLLHWGLRLDPPN
                     AFGAAKRKLAGYSIETFSPGNLHGECKISDDGLVARCGIDKGIAIIVADADFLNTPAL
                     GDAGRHNLDGLLALLASLEQS"
     gene            complement(8420..8653)
                     /locus_tag="VE968_04915"
     CDS             complement(8420..8653)
                     /locus_tag="VE968_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016747707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51200.1"
                     /translation="MPHQAGSSAQRIRIGLTGLAFAFLLVLLGSIISRSSHEDVNNAQ
                     QQAAANESSEPLAELGVAPGASDANNNTQAAKK"
     gene            8742..9125
                     /locus_tag="VE968_04920"
     CDS             8742..9125
                     /locus_tag="VE968_04920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51201.1"
                     /translation="MTRTPLLITLAAAAALAGCNKESHTIVAGPDTGDNNVVSNTPVA
                     LPPSVVSSKTYRCADNKIVYVDWLSDNKSANVRTEKEGSPTQVTAAQPGKPMTAAGGY
                     SVDGTSSASSVKIAVPGHPSQTCNG"
     gene            9187..>9672
                     /locus_tag="VE968_04925"
     CDS             9187..>9672
                     /locus_tag="VE968_04925"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HZU51202.1"
                     /translation="MLLNRRTFTSSLFGAALGTQLPSRVLARSPDIPSAIAAIRAFGE
                     ADLVFNNLPGMTLGIVTPDGRRTVMNFGYANVDRQTPIGPQTLFQIGSITKAMVATIV
                     HQLVAAGRLQLSNRVSTLLPSVPLPSGNGIELQHLLDHVAGLADDPPLFAAGGLWTAY
                     DP"
BASE COUNT         1840 a         2988 c         2970 g         1874 t
ORIGIN      
        1 cagataggtc gcgaactttg cattaccgac gaggtaggcg agcagcacga aggcgaggct
       61 cgcgatgatc accggcatgg ttgcgagacc gtccaggccg tcggtgaggt tcacggcatt
      121 gccgaaggcg acgatcacga atgctccgaa ggcgacgtag agtggcactc ccaggtcgag
      181 gactgtgtcc ttgacgaacg gcaggtgaag ccctgtcccg ccggttcgaa cgatgatcca
      241 gcttgccact ccggcaatga ggaactcgag cgtcaaacgg gtcttgcccg agagtccagc
      301 gtggtgcgcc ttcttgactt tgtcatagtc gtcgagccag ccgatcacgc caaagccggc
      361 ggtcaccatc aagcaggccc agacgtaggg attacctaat tccatccaaa ggagcacgga
      421 gatcatgacc gacgtgagga tgagtagacc acccatggtt ggagtgccgc gtttcgcgag
      481 atggctttgg ggaccatcgg ttcggatcgg ctggcctttg ccttgagtct tcctcagcca
      541 ggtaatgaat ttggggccga gaaggaggcc aatcagcagc gccgtcgcgc tcgcagcgcc
      601 tgcacggaag ctgatgtacc gaatgaggtt gaggaagcct gcgaaatgaa gctgcgcagc
      661 gatcacgtag agcatgcgag ctcctttgcc atgcactcga caagtttagc gagcccgacg
      721 gagttgctcg cctttacaag gaccgcgtct ccaggtcgca ccagcgcacg caaggccttc
      781 gtcgcctcat cgacggtttc cacgcgcaat gtcgtcgcac ggccgccaag ctcctcctcg
      841 agcggacgca tgtccgcgcc gatcaggacg agctggtcga ccttcgccga cagaacagcg
      901 ggagcaagac ccgcgtgcaa cgcgtcgctg tgttctccga gctcgcgcat tgggcctaga
      961 accgcaatgc gtcgggccac atcccgctcc tgcccaaggc tttgcagggt cgccgccatc
     1021 gaggcggggt tcgcattgta actctcatcg atcagcaaaa tttcgccgcc atcgatcgga
     1081 atgacatgac gctgccctcg ccccttgagc cccgcgagat cggcaagtgc aaggcctgcg
     1141 cgcgcgacat cggcgccgac tgcctcgact gcagcaagta cggcgagcga gtttgaaacc
     1201 cagtgctcac ctcgctgcga gatcgtgaaa gtgagctcgc gttcgagaag tgctgcactg
     1261 atgaggctgc ctcccccgtc ggcacttacc gcatgaacgg catggacatc agcatcgccc
     1321 gagccgaagg taatgatccg ctcagcatag cgtcgcgccg ctttcaccag ccgatcgcgg
     1381 tgcggcgtgt cgttaggaac gatggcgatg ccgcttggct cgaggctctc gaatatctcg
     1441 gccttggcat ccgctattgc ctcttctgac ccgagatttt caatgtgagc tggagcgatt
     1501 gcggtaataa gtgcgacatg cgggcggact tgcgcggtta atgctcgtat ttcgccagca
     1561 ttgttcatcc ccatctcgaa tatcgcgaac tcgctgtcgc gcggcagtcg agcgaggctc
     1621 aacggaacgc cggtatgatt attgtagctc ttgaccgatc ggtggacctt tccggggcga
     1681 tttcgatcga gagcagcaaa tagcgcttcc ttggtgctgg tcttgcctac cgaaccggtc
     1741 acgccgacga ttttcgcgcg gcttcgccgc cgcgccgcgc aaccaagtgc tcgaagcgct
     1801 tcgaacgtgt cagaaacgag gacgtgcggg ccgccgaccg gctgcgagac caatgcaccg
     1861 gcagcaccgg ccgcaaaagc tccctccacg aaccggtgcc catcttgaac ggtccctggc
     1921 attgcgacga acagatcgcc cggttgcacc tcacggctgt cgaaggtgac gccgttcacg
     1981 tcaaaggcat ccgtcgccga gccaccggtg gcggaggcaa tttcagcgga ggtccaaagc
     2041 gcggtcacgc cgcgcactcc cgtgcgacca gcgcgtcgtc gaacggcaac accgtgtcgc
     2101 cgatgatctg gccggtctcg tgccccttgc cggcgacaag aacaatatct ccttcccgcg
     2161 ccgattggat tgcttcagcg attgcctggc gccggccagg cacctctcgt gctccggttg
     2221 cgccggccat cacctccgcg cgaatgcgcg ctggatcttc gctccgcggg ttatcatccg
     2281 tgacgatgac aatgtccgaa aggcttgcag caatccttcc catttcgggt cgcttgccct
     2341 ggtcgcgatc gccaccagcg ccaaatacga cgatcaatcg tccatcgacg tggggtcgca
     2401 aggcggcaat ggctgcttcg agcgcgtcgg gggtatgggc gtaatcgacg tagacgggaa
     2461 ctccggcgcg gctgattacc gcacgttcca gccgcccgcg cacgggcgcg acgcgctgca
     2521 tcgcagaaaa ggtgcttggc cagtcgaggc ccgttgcaag cacgagcccg gcagcagtca
     2581 atacattcgc tgcctgatag gcgccaataa gtgggagcgc gagacggtgc gatttgccgc
     2641 cgtaatcgac gattagcgtc tgcccgagcg ccgtcggcga ctgttcgacg agacggatgg
     2701 tctcgcctct tcgcccgacg gtcagcagct catgcccacg ccggcgcgcg cgctcgatta
     2761 caacgtcgga cttggggtcg tccgcccaca caaccgccgg ctttcccggc ggcaggagct
     2821 cgtcgaacag gcgcatcttg gctgcaaaat aggcttccat ggagccgtgg tagtcgaggt
     2881 ggtcacggct gaagttcgtg aatgccgctg cgctcagcgg aacaccctcg gcgcgatgct
     2941 gatcgagccc gtggctcgac gcctcataag cgacgtgact gatccccatg cgcttgaggc
     3001 cggccatgtt gttgaggaac gtgacgatat cgggggtagt aagccccgtt gttacctggt
     3061 catccgccgt cgtcaccccg agcgttccga ttgaagctga ccgtttcccc gacatgcgcc
     3121 acatttgacg cgtcatttcc acggtcgaag tcttgccgtt ggtgcctgtc acggcaacaa
     3181 cggtctcggg aaagggagca tagaatttcg cggcgacctc ggcaaagagg cgtcgaggct
     3241 cggcatcagc aaggagcggc acactcatac tttgcgcctg cggccgagca acaatggcga
     3301 cggcaccgcg ctcgaccgca gcaccaatga agtcctcgcc gttgaacacg gcgcctttaa
     3361 acgctccgaa gacactgccg ggcatcacct tgcgatgatc gatggcgaag ccggttactt
     3421 ccaaaccgga gtcgacatcg gcgatgtcgc gtagcttcac gcccgtcagt ccttcttcgc
     3481 gtcttgcttg gcgtcctgca cgtaagggag cacttcggcc atgttgggtt cgcgattcaa
     3541 gtcgggcacg acacccaaca tcggcgcaat gcgactgata gtcttgctga ccaccggggc
     3601 aaagttccag ccggccgtgg tgaacccgta ggtctctttg gtcggctttg gctcatcgag
     3661 catcacgacg atcacatagc gcgggtcgtc catcgggaac acaccggcga agctggtgag
     3721 gttgatcgtc ctgctgtaat ggccgccgat gactttagac gcggtgccgg tcttaccgcc
     3781 gacgcgatag cccggtgcgt ccgctttctt cccggtgccc ctctttacca ccagtcgaag
     3841 cagcgctcgc atcttgtagc tcgtgtcggc cgtgaagatt cgctttccag gagacagcgg
     3901 atgacctgcg ccgattttga ggatcgtggg gggatgataa acgccgtcgt cgaacagcgt
     3961 cgcatacccc atagccaact gaagaggggc aacggcaatg ccttggccaa atccaatatt
     4021 catggtctcg aaaggacccc agcgtgatcc cggtgtaagc ggacgaccgc gctcgcgcag
     4081 ttcgatctgg ggcttgtcga gaaaacccat cttcttgagc caggcctgct ggcgctcctt
     4141 gcctaagtga tccgcgatct gcccgaggcc gatgttcgaa ctctccatca ttgcttcggc
     4201 gacagagcac ggtcggccga aggggtgagt gtcgtggatt acgtgcccgt aggctggcag
     4261 ggccaacggg cagttcagca tttgtccggg tccgctgacg acgcccgaat ccagtgccat
     4321 tgcgagcgtg aatggcttga aggtcgatcc aagctcaaag accccaagag tggcgcgatt
     4381 gaacatctgg tctggagtgc cgcgcccagg cgcattcgga ttgaatgtcg gcatcgacgt
     4441 cattgccagc acttcgccgg tgtgaacatc catgatcacg ccggcagctc cgatggccga
     4501 gaaatgcgtc attgcctcgc cgagctcaga ttcgagcgcc tgctgaactc ggctgtcgat
     4561 tgacaacatc aatggcgcgc cacgcgtcgc ggggtcggcg aggtatttgt caaatgcgcg
     4621 ctcgacgccc gcagcgccgt gcccatcaat gtcagtgaac ccaaggacat gcgcggcgag
     4681 gctagtctgc gggtaaagcc ggtcgggctc gcgctcaatc gcaaggcccg gctcaccaat
     4741 ggcgttcacg gcatccacca gctcgggcga cgcgcggcga cggaggtaaa agaatggctt
     4801 tcccgaccgc agcatcgcga aatattgctc ggcgctgtgc tctggcatca actgcgcgag
     4861 gcgctgcgcg agcgcaagct tgtcgccgat caccttgttg gggtgtatcg caatcgtcca
     4921 agcatcgatc gttcgcgcga gtggatcgcc gttccggtca acgatatccc cgcgttccgg
     4981 aacgaacgtt gtcagttcct ccttgcgccc ggcatggtca ccaaaggctg cgagataaag
     5041 gattctcaag gcgacgatcg cgatcatccc ggcaaacacg agcatgccga acatcagccg
     5101 ctggtgcatg accgcgagaa gttgacggcg ttgaccgacg agtcggagcc gctcgggccg
     5161 ttgtgcgacg agagcgggtg acggtgcgtt catcgttcgg cagatgttgc tttcgagttt
     5221 ccaaaatgac ggctcggcaa gggcgccaat ggatcaacct ttgcaacgcg taccggcttt
     5281 gtcagcgcct tggccgtaac gacccgcgcc ttatccacgg ttttcttctt cccggtaggc
     5341 tgggttaggt tccttgccgt gtcggccgtt tccgccgccc gcttggcggc aggcttcttt
     5401 atagagtggg cggccgcgag gcccgacttc ccaatggacg ccttgtgtgc cggcttagcc
     5461 gcaattgccg gctggtcctt ggatttggcc gccgcccggg gcaatgggac ggcggacggc
     5521 gccgggacct cgcgcgtgtc aatcttgaag cttgcttggc gaagcaaggc gccaggcgtt
     5581 gctgccgtcg gcgctccgga atcgtcggtc tcgggctcgg cgaggagcgg cctcttgggt
     5641 tgcaccggcg ctgaagcgag gatgacagga gccttgaagt caggcttgtg atcgggcgct
     5701 gcgaggcggg caagttcaaa cccgcccttg acgaactggt cggctgccgg cgcggctagg
     5761 gcgaacgcac cggcattcca gcgctcgagc tgcgacaacc gaccgcgcgt accaatctcg
     5821 gtctgcagta cacgcatatc gcgttgcgcg agcacaatct ttgtctcgac atcctcgagc
     5881 tgtgctcgct ctgacgccac tcgtagtgag acgagatagc agctgagtgc ggcgccggcg
     5941 cagctggcaa ccatgaagac ggagcgaaag ctgcggctac tcattggaga acttccttgc
     6001 gagctggggc ggaggtgcgg attgcgctgc gcagccgcgc cgaacgggcg cgcggattga
     6061 cgagtagttc gctcgccgac ggcgcgattg gctttgcgac cttttcgaac gtcgcttccg
     6121 ctgtagtggt tggcgccggt cggtgccgag aacccgccgg gcttgcaccg ctgcgttcgc
     6181 gcaggaagtg cttgacgatc ctatcttcga gactgtggaa agtgacgacg gcaagccgac
     6241 cgcccggctt aagcgcccgc tcggctgcct cgagcccctg ttcgagctcg tcaagttccc
     6301 cgttcagatg gatccggatg gcctgagatg tcctcgttgc gggatcactt ttctgccccg
     6361 gccggaatcc cgcagctcgg cgcacaactg cggcgagttc gcccgtgcgc tcgaggggtc
     6421 ttgccgcaac aattgcgcgg gcaatcgccc gggcgcgcgg ctcctcccca tagtcgcgca
     6481 agacccgagc gatctcggcc tcgtcggccg aattcagata ttcagcagcg gtcaggcccg
     6541 accggctcat ccgcatgtcg agcggtccgt cgccttggaa cgaaaagccc cgctccggtc
     6601 gatcgagctg catcgaactg acgccgatat cgagcgcgat cgcgtcaaca agcccaattc
     6661 cttttcgggc aaggacttgg tccatttggc tgaatcgctc ctcgacgagc gtcagccggg
     6721 gatcttcgac aaacgatcgt ccagcagcaa tggcatccgg atcgcgattg aagccgatca
     6781 cttgtgccgc gcccgccgca aggattgcgc gcgtgtaacc gcccgcaccg aaggtgccgt
     6841 cgacgacgat ctcgccgccg tgcatggcga gtgcacgaat gacgtcactg accagcaccg
     6901 gcacatgtgg ggcattgtct gcgccggcgc tggtcatgcc gcgccccgct cttcaaggcg
     6961 gaagcgagca atgtccttca gatcctcggg aatgcgagga tcatcgagga gcaactgtgg
     7021 gttccagatc tggaaggtct cgcccgttcc caggaacaaa gcgaggtcgc cgatctcgcc
     7081 ctttcgacgc atcatcggcg gaaagagaat acgaccggag ctgtcgtaag gcacttcctc
     7141 cgttgcggcg aaggccatga gatttcgctg ctggtactca agctgagcgt cggggcttgt
     7201 ctcttccttt tcaagcaggc gctcgagctt ggcgtgcttc aatgacgcat aggcggggtc
     7261 ataggcgctg aggcatggga aggcctcgtg ctttgcaagt acaatggtgc gggcatcgcc
     7321 gcggcgttcg atcacgccgc gaaggaaggc gggaacggag acgcgaccct ttgcgtcgac
     7381 cgcattcagc gcactgccct gaaacagatg ctctagcgcc acgcccaaaa cactccccgt
     7441 tcgaagcgcg cgagtcctcg cccgcagacg tgcgccgtcg cgcgcgctga cgtgaggttc
     7501 gaatcaaagg gttaggcccc cgcgctccaa gctgttggta actcaacgcg cttcgggata
     7561 caatgggttt tcatgggaaa tcgtgggatt tcgtggagat aactggaaat ccggggcttt
     7621 tgccggactc aacagggccg ttgttcgcta gttgttccct tgcatgtggc tgtggataag
     7681 tgtgtgattt agcgaatcac gattgttcga gtgacgcaag cagcgcgagg aggccgtcga
     7741 gattatgtct cccggcatcg ccgagagccg gcgtgttcag aaaatcagca tcggcaacga
     7801 tgatggcgat gcccttgtca attccgcatc gcgcgacaag cccatcatcg ctgatcttgc
     7861 actcgccgtg caggttgcca ggcgagaagg tctcgatcga gtaaccggca agcttgcgct
     7921 tcgcagcacc gaacgcgttc ggcggatcca atcgcaagcc ccaatggagg agaaggccgg
     7981 aatccatgaa gaccgggagc ggtcgcgcga cgtcgcctag tggaaatttg cttggccact
     8041 caaggagagg gtcggcaaga agcaatagat gacctccgct tcgcacccaa tggtcgagcg
     8101 caacgaggtt ctcggcagtc tgcgcgcgag gctgcgccat gagcatgagg cgcccctggg
     8161 caagctctga agcgtcggtg acactgatcg gaacgacttt gtagcggctc tgcagccgtt
     8221 tgatcactgg cgagccgctg ccgctcaacg agaaatcctc gccgaacatg attgggaggc
     8281 tggtaagcaa gagtagcttg ggacgtcggc tcgggagacg cggtggattt ccggtcccat
     8341 cgctcaccag gaacgcaatc gcgattgcca ccgcgagcaa aatcaacaac aggagaagcg
     8401 cgcgacgacc gcgcacgtcc tacttcttgg ccgcttgagt gttgttgttc gcgtcggatg
     8461 ctccgggggc aaccccaagt tctgcaagcg gctcgcttga ctcgttcgct gccgcctgct
     8521 gctgcgcgtt gttcacatcc tcatggcttg accggctgat gatcgatccc agtaagacga
     8581 gcaaaaaggc gaacgccagg cccgtcagcc cgatacggat gcgttgagcg ctgctgccgg
     8641 cctggtgggg cattgtcaca ccggaagcta tgtcccacaa cgatatttgg caagaacatg
     8701 gccttgacgg ttcgcctctc gttagtgaag ggcgatattc tatgactcgc actcccctgc
     8761 tcatcacgct tgctgcggcc gctgcgctag ccggctgcaa caaagaaagt cacaccatcg
     8821 tcgctggccc ggacacgggc gacaataatg tcgtttcgaa cacacccgtc gcgcttccgc
     8881 cttcggtcgt ttcgagcaag acctatcgct gcgccgacaa caagatcgtc tacgtcgact
     8941 ggctctcgga caacaaatcc gcaaacgtgc gtaccgagaa ggaaggcagc ccgacgcagg
     9001 taaccgcggc gcagcccggc aaaccgatga ccgcagccgg cggctattcc gtcgatggca
     9061 cttcctctgc ttcttccgtc aagattgccg tacctggtca tccatcccag acctgcaacg
     9121 gctaaacacg accagttggc gcttccctcc gcggcgtttt cagaagcgag cggaggggag
     9181 agtctgatgc tgcttaatcg ccgcacattc acgagcagtc tgtttggtgc agcgcttggc
     9241 acgcagcttc cctcccgagt gcttgcacgg tcacccgata taccgtcggc gattgccgca
     9301 atccgagcat tcggcgaggc ggacttagtc ttcaataact tgcctggaat gaccctcggg
     9361 attgtgacgc ccgacggacg tcgcacggtc atgaacttcg gctatgccaa tgttgaccga
     9421 cagacgccga ttggccccca gacactgttc cagatcggct caatcaccaa agcgatggtg
     9481 gcgacgatcg tccaccagct cgtcgctgct ggaaggctgc agctgtcgaa tcgcgtgagc
     9541 acgctccttc cttccgtgcc gctgccgtcc ggaaatggca tcgagctcca gcacctcctc
     9601 gaccatgtcg ctggccttgc cgacgatcca ccgctctttg cggcaggtgg gttgtggacc
     9661 gcttacgatc cc
//
LOCUS       DASRBJ010000175         2737 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_272584,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000175 DASRBJ010000000
VERSION     DASRBJ010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2737
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272584"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            90..2399
                     /locus_tag="VE968_04930"
     CDS             90..2399
                     /locus_tag="VE968_04930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDC48 family AAA ATPase"
                     /protein_id="HZU51203.1"
                     /translation="MPETDTIDRVTSRRVQVASLPPADSGRGFARLPDRLMDELGLNE
                     GDVIEIIGKRSTAARAIRPYGEDENIDIIRLDGLQRANAGVGSGDFVEVRKAESHPAT
                     RVVFAPAQPNVRLQGSADALKRTFAGRPLVEGDTVATAGHQRINADMPEHIRQLLNAP
                     AFALQELRLVVVTALPKGIVHIDNKTAVELLPEYTAADGQRRADVTYDDLGGMRDTID
                     ALREMVELPLRHPELFQRLGVDPPKGVLLHGPPGTGKTLLARAVANESAAKFFHIAGP
                     EIMGSAYGESERRLREIFEQAAQNAPSIIFIDEIDSIAPKRGQVTGEAEKRLVAQLLT
                     LLDGIEPRQNTVVIAATNRPEAIDEALRRPGRFDREIVVGVPDEPGRREILGIHTRGM
                     PLAPDVNLEDLSRRTYGFVGADLAALCREAALEAVRRIMPRINLAEQVIPSEILDALS
                     VELRDFENALKRVQPSAMREVMVEAPQVRWDDVGGLDVARDRLREGVELPLKHPEAFR
                     RLGIRPAKGFLLYGPPGTGKTLLAKAAAREAEANFIATKSSDLLSKWYGESEQQIARL
                     FNRARQVAPTIIFIDELDSLVPARGGGLGEPQVTERVVNTILSEMDGLEELQNVVVIG
                     ATNRPTLIDPALLRPGRFDELIYVGVPDTAGRRRILAIHTQAMPLAPDVNLETIAQRT
                     ERFTGADLEDLVRRAGLTALRRGLDASSVTMADFEIALGETRASVTQDMLEEYERIQE
                     TLKSEATRPMGGIGFVLPGMLRPKGGGKS"
     gene            2541..>2737
                     /locus_tag="VE968_04935"
     CDS             2541..>2737
                     /locus_tag="VE968_04935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HZU51204.1"
                     /translation="MPSSSARTLKSPRRLQRRRDRRSKSPQWQFLRGFLKNPVMVGSI
                     IPSSKVLIDKMLEPVDWATTKL"
BASE COUNT          549 a          843 c          838 g          507 t
ORIGIN      
        1 aggcgcgatc aaatattgag cagccgttga aaccgtgcgc gcgtgccacc gttgcctatg
       61 cgccttaagg aagcgggtca ggagaacgaa tgcctgaaac agatacaatc gatcgagtaa
      121 cgtcacgccg agttcaggtc gcaagccttc cgccggcaga cagcggcagg ggattcgcac
      181 ggttgccgga ccggctcatg gacgagctcg gcctcaacga aggcgatgtt atcgaaatta
      241 ttggaaagcg atcgacggcc gcgcgtgcaa tccgccccta tggtgaggac gagaatatcg
      301 acatcattcg cctcgacggt ctccagcgcg ccaatgctgg cgttggctcc ggagactttg
      361 ttgaagtgcg aaaggctgaa tcgcacccag cgacgcgcgt cgtctttgct cccgcgcagc
      421 caaatgtccg acttcagggt tcggctgacg cgctgaagcg caccttcgcc gggcggcccc
      481 tcgtcgaggg cgacacggtc gcaacggccg ggcaccagcg gatcaatgcc gacatgcccg
      541 agcacatcag gcagctgctg aacgcacctg ccttcgcact ccaagagctg cgtctcgtcg
      601 tggtcactgc tcttcccaag ggcattgttc atatcgacaa caagactgcc gtcgagctcc
      661 ttcccgaata tacggccgct gacggccagc gccgggcaga tgtcacctat gacgaccttg
      721 gcggcatgcg cgacaccatc gacgccttgc gtgaaatggt cgaacttcct cttcgccatc
      781 ctgagctgtt ccagcgcctc ggcgtggacc cgccgaaggg ggtccttctt catgggccgc
      841 caggcactgg aaagaccctg ctcgcaaggg ccgttgcaaa cgaaagcgcc gcaaagttct
      901 ttcacatcgc aggcccggaa atcatgggct ctgcttatgg tgaaagcgag cggcggctgc
      961 gcgaaatctt cgagcaggcc gcgcagaacg caccgtcgat cattttcatc gacgaaatcg
     1021 actcgattgc tcccaagcgt ggacaggtaa ccggcgaggc cgaaaagagg ctggtcgcac
     1081 aattattgac cctcctggac ggcattgagc cgaggcagaa cacggtcgtg atcgccgcga
     1141 cgaaccgccc ggaggcgatc gacgaagcac ttagaaggcc gggtcgattc gatcgcgaaa
     1201 tcgttgtcgg cgtaccggac gagcctggcc gtcgcgaaat cctcggtatc cacacgcgcg
     1261 gtatgccact tgctcccgac gtgaatctcg aagacctctc gcgacgaacc tacgggttcg
     1321 tcggtgccga ccttgctgca ctctgccggg aggcggcact tgaggccgtt cgccggatca
     1381 tgccgcggat aaatcttgcg gaacaggtga ttccctccga gatccttgat gcgctgtcgg
     1441 tggaattgcg ggacttcgag aatgcgctga agcgcgtaca gccctcggcg atgcgcgaag
     1501 tgatggtcga ggcgccgcaa gttcgctggg acgatgttgg cgggcttgat gttgctcgag
     1561 accggctccg cgagggcgtc gagcttccgc tgaagcatcc ggaagcattc cgtcgcctcg
     1621 gtatccggcc ggccaagggc ttccttctat atgggccacc gggaaccggg aagacgctcc
     1681 tcgccaaggc agccgcgcga gaggccgaag ccaatttcat tgccaccaaa tcctctgacc
     1741 ttctcagcaa atggtatggc gagagcgagc agcagattgc gcgcctgttc aatcgagcgc
     1801 ggcaagtcgc gccaacgatc atcttcattg acgagcttga tagcctcgtc cccgcacgcg
     1861 gcgggggtct tggagagcct caagttaccg agcgcgtggt gaacacgatc ctctcggaaa
     1921 tggatggact tgaggagttg cagaatgtcg ttgtgattgg agcgacgaac cgcccaactc
     1981 tcatcgaccc cgcgcttctc cgtccgggcc gattcgacga gctcatctac gtcggtgtac
     2041 ccgacaccgc agggcgtcgg cgcatactcg caattcacac gcaagcgatg ccgctcgcgc
     2101 cggacgtgaa tcttgagacc atcgcgcaac gcaccgagcg gttcaccgga gcggaccttg
     2161 aagacctcgt ccggcgtgcc ggcctcaccg cgctacgccg cgggcttgac gcttcgagcg
     2221 tgacaatggc tgatttcgag attgcgcttg gcgaaacacg tgcgtcggtc acccaggaca
     2281 tgctcgagga atatgagcgc atccaggaga cattgaagag cgaagcgact aggccgatgg
     2341 gcggtattgg gtttgtcctt cccggaatgc ttcggcccaa gggcggcgga aaaagctagg
     2401 gtgtgtcaat ttcgccctga tgtcggcgcg gttcgccggt cggcttggag cctcgcgcca
     2461 cagcttgcgt tcggaacttg ccaagcggcg gcgcatttgc caacgctccg gccttcgcct
     2521 cgcccccaaa cggagcaatc atgccctctt cttccgcgcg aacgctgaaa agtccccggc
     2581 gactgcagcg gcgccgcgac cgtcgttcaa aaagcccgca gtggcagttt cttcgtgggt
     2641 ttctaaagaa cccggtgatg gtcggttcga tcatcccgtc gagcaaggta ctcatcgaca
     2701 agatgctcga gccggtcgac tgggcgacga ccaagct
//
LOCUS       DASRBJ010000176         2950 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_168830,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000176 DASRBJ010000000
VERSION     DASRBJ010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2950)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2950)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2950
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168830"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2347)
                     /locus_tag="VE968_04940"
     CDS             complement(<1..2347)
                     /locus_tag="VE968_04940"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HZU51205.1"
                     /translation="MDCGPASLKCLLEGFGISASYGRLREACQTDVDGTSIDTLEQIA
                     IQLGLEAEQIMLPLDHLLLPASDALPAIVVVQLAIGLTHFVVAWRRHGPIIQLMDPAV
                     GRRWATSTRFREQVYIHTATVPAEGWREWAGSEPFLKVLRQRMSAVGVGRSAARALID
                     AATKDSSWRSLGALDAATRMTHSMVSARGLRPGREAGSVLKRFSEDAEQIPDNYWCVR
                     PGPPDDDGAEQLRFRGAVLLRVTGVVRRSEQAEAAPALPRDLVAALKEAPARPGRELL
                     RLLRADGFLAPSALTLAMLIATGGVIVEALLFRGIFDLGRELGTAGQRIAAMLAFVLF
                     GVALLLLEFPLANGLLRIGRCLEVRLRLAFLQKIPLLGDRYFQSRLTSDMAERSHSIH
                     QVRHLAELGGQLTRSTCELLLTTAAIIWLAPESALWAIASAACALLLPLIAQPPLMER
                     DLRVRSHLGALSRFYLDALLGLVAIRAHGAERSVRREHEGLLLEWARAGFGLQRIAVS
                     VDALQFLCGFGLAAALLLTHLGRGVEPASVLLLAYWALNLPVLGQDIALVAWQYPAYR
                     NMTLRLLEPLGAPTQRLPEETDTRPNNTPIEAALENVTVHAGGHTILDEINVCIEAGS
                     HVAIVGPSGAGKSSLVGLLLGWHRAAAGRVTIDGQELDEARLHTLRSEIAWVDPAVQL
                     WNRSFVENLSYGAAPDAPLPIATAIDAADLHGVLEKLPDGLQTSLGESGALVSGGEGQ
                     RVRLGRALLRPNVRLVILDEPFRGLGREQRRDLLARARRLWK"
     gene            complement(2392..>2950)
                     /locus_tag="VE968_04945"
     CDS             complement(2392..>2950)
                     /locus_tag="VE968_04945"
                     /inference="COORDINATES: protein motif:HMM:NF024829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HZU51206.1"
                     /translation="SGSDREAAIHDLRSQVEALEADRLTTQKTIQRVQFEITRRRIVA
                     PVSGKFGEVAILRSGAYVAEGEKLGTIIPSGELRVIADFPPPSALGRIHPGQPAHLRL
                     QGFPWTQFGSVPTHVTSVAGEVRDGYVRVELAVDRSVNSIPLQHGLPGTVEVQVENVT
                     PAALLLRAAGQMIATPKTPFARQAQ"
BASE COUNT          538 a          881 c          981 g          550 t
ORIGIN      
        1 ctttccagag gcgtcgcgct cgtgcgagca ggtcgcggcg ttgttcgcgc ccaagaccgc
       61 ggaacggctc gtcgaggatt accaggcgca cattgggccg tagtagcgct cgaccgagac
      121 gtacgcgctg cccttcgccg ccggagacga gtgctccgct ctcgcccaat gacgtttgca
      181 gtccatcggg tagtttttcg agaactccat gaaggtcggc ggcatcgatt gcggtcgcga
      241 tgggcagagg cgcatccggt gcggcgccgt aggagagatt ttcgacgaag gagcgattcc
      301 agagttggac cgctgggtcg acccatgcga tctcggaacg cagcgtgtgc aatcgcgctt
      361 cgtcgagttc ttgtccatcg attgtgactc ggcccgcggc cgcccgatgc catcccagca
      421 ggagtccgac gaggctcgat ttgccggcgc ccgatggccc cacgatcgca acatggctgc
      481 ccgcttcgat acacacgttg atctcatcaa gaatggtgtg gccgccggcg tggacggtca
      541 cattttcgag ggcggcttcg ataggggtgt tattcggtcg cgtgtcggtc tcttccggta
      601 atcgttgagt cggcgcgcca agcggttcga gtaagcgtag cgtcatgttg cgataggcgg
      661 gatactgcca ggcaacgagc gcgatgtcct gcccgagcac tgggaggttc agcgcccagt
      721 acgccagcag gagaacgctg gctggctcga cacctcgtcc caggtgcgtg agcagcagcg
      781 cggctgcgag accgaaaccg cagaggaatt gcagcgcatc gactgagacc gcgatccgct
      841 gtagtccgaa tcctgcacgg gcccattcga gtagcagtcc ctcgtgttcc cggcgcacgg
      901 accgttcggc gccgtgtgcg cgaatcgcta ccaggcccag cagcgcgtcg agatagaagc
      961 ggctcagcgc accgaggtgg ctgcgtactc ggaggtcgcg ttccattagg ggcggttgtg
     1021 caatcagcgg gaggagcagt gcgcaagccg cggacgcaat ggcccatagt gcgctttccg
     1081 gagcaagcca gatgattgcg gcggtggtca gaagcagctc gcacgtggat cgtgtgagct
     1141 ggccgcccag ttcggccagg tgtcgcacct ggtgaatgct atggctgcgc tcggccatgt
     1201 cggaggttag acggctttgg aaataacggt caccgagcag cgggattttc tgcagaaatg
     1261 cgagacgcag gcggacctcg aggcaccggc cgatacggag gaggccgttt gccaacggga
     1321 actcgagtaa caggagtgcg acaccgaata gcacgaaggc cagcatcgcc gcgatgcgct
     1381 gcccggcggt gcctagttcg cgaccgaggt cgaaaatacc tcggaagaga agtgcttcaa
     1441 caatcactcc gcccgttgcg atcagcattg cgagcgtgag ggccgagggg gccaggaacc
     1501 cgtcggccct tagcaggcga agcaattcgc ggccgggccg cgcgggggct tctttcagcg
     1561 ctgccaccaa atcgcgaggg agtgcggggg cggcttcggc ttgctcgctg cgcctgacca
     1621 ctccggtcac gcgcagcagg acagcacctc ggaaccgaag ttgttcggcg ccatcgtcgt
     1681 ctggcgggcc gggtcgtacg caccagtaat tgtcggggat ctgttcggcg tcttccgaga
     1741 agcgcttcaa cacgcttcca gcttcgcggc ctggacgcag gccacgggcg ctgaccatcg
     1801 aatgcgtcat tcgcgttgcg gcgtcgagtg cgcccagcga tctccagcta gagtctttcg
     1861 tcgcggcatc aatcagcgct cttgcagcgc tgcggccaac accgaccgct gacatccgct
     1921 ggcgcagcac ttttaagaac ggctcagacc cggcccactc gcgccagccc tcggcgggca
     1981 cggtcgccgt atggatgtag acctgttcgc gaaagcgtgt ggacgtcgcc cagcgccggc
     2041 ctacggcggg atccattaac tggatgatcg gtccgtgacg acgccacgcg accacgaagt
     2101 gtgtcaggcc gatcgcaagc tgcacgacga cgattgccgg cagcgcatcg ctggccggga
     2161 gcagcagatg atcgagcggg agcatgatct gttccgcctc aagcccaagc tgaattgcga
     2221 tttgttcgag cgtgtcgata gacgtaccgt caacgtctgt ttggcaggct tcgcggagac
     2281 ggccatagct cgcggaaatt ccgaagcctt cgagcaggca tttgagactg gcaggtccac
     2341 agtccatcgc agaggactgc acgacttccg gagcgagaaa ccggcgcagg gtcactgcgc
     2401 ctgcctggcg aacggagtct tgggggtcgc gatcatctgt cccgcggcac gcagcaacag
     2461 cgctgccgga gtgacgtttt caacctgaac ttcgacggtg cccggtaacc cgtgttgcaa
     2521 cgggatagag tttactgagc gatcgacggc aagctctacg cgcacgtaac cgtcgcgtac
     2581 ttcaccggca acgctggtga catgtgttgg cacactgccg aactgcgtcc acggaaaacc
     2641 ttggagtcgg agatgggcgg gttggccggg gtgaatgcgg ccgagtgcgg aggggggagg
     2701 gaagtcggcg atgactcgta gctcgcccga tggaatgatg gtgccgagtt tctcgccttc
     2761 tgcaacatac gcccccgatc gcaagattgc gacctcgccg aattttccac tgaccggcgc
     2821 tacgatgcgg cgtcgcgtga tttcgaattg cactcgctgg attgtctttt gtgttgtgag
     2881 gcggtcggct tcgagcgctt ccacctggct tcgcaagtcg tggattgcgg cttcccgatc
     2941 gcttccgctt
//
LOCUS       DASRBJ010000177        10298 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_582326,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000177 DASRBJ010000000
VERSION     DASRBJ010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 10298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10298
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_582326"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..721
                     /locus_tag="VE968_04950"
     CDS             <1..721
                     /locus_tag="VE968_04950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HZU51207.1"
                     /translation="MSQSLRHRIDKIEAFAADVTHELKNPLASLRSAIDGLDRVEDPA
                     LREKLKAIVREDVARLDRLIGDISEAARTDAELSRATFERVDLGAVVKQLAESWETRR
                     EKGTARIAFARPRKESAVVMGKPDRLARAINAIIDNAVSFSPPGGLVEIVVARVGDDV
                     RVRIDDEGPGVPPDAREAIFNRFHSVRPESEKFGRHSGLGLAIAQAIVNGHDGEIDVQ
                     DRDDAPSGARFTIKLPAADRE"
     gene            727..1176
                     /locus_tag="VE968_04955"
     CDS             727..1176
                     /locus_tag="VE968_04955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr kinase/phosphatase C-terminal
                     domain-containing protein"
                     /protein_id="HZU51208.1"
                     /translation="MNPTPGPRLSAETVHGSTVASNGRAVLITGPSGSGKSDLALRLI
                     DRGFTLVSDDQTIVRKDGSRLLASAPPTIAGKLEIRGIGIVEMERADNVPVALIVELT
                     SDIRRLPDDSRERPILGVQLPLVTIDAMTASAASKVSVALDRMGIRF"
     gene            1176..2090
                     /gene="rapZ"
                     /locus_tag="VE968_04960"
     CDS             1176..2090
                     /gene="rapZ"
                     /locus_tag="VE968_04960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010238708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HZU51209.1"
                     /translation="MSSARRLPRLLLVTGMSGAGKSTVLDALEDMGWEVVDNLPADLV
                     QEFVYGGGQRTANVAIGMDVRSRGFDPETLGDFIHSIEGVEPELLYLDSSSSELIRRY
                     DETRRRHPLAPDRPAEDGIAQERQLTWPLRTAADSIIDTTDFSPAELRDELRRRFGGD
                     SDQPVLTISSFSFARGISRTADLVFDLRFLPNPHWIEELRPLTGADEPVRSYLEQAEG
                     WTDAIERIESLLIDWIPRYWAAGKSYVTVAFGCTGGRHRSVAAAVEMAERLGRAGFAP
                     NVRHRDLAPRSRDTFERQSGRAPGSEVS"
     gene            2095..2502
                     /locus_tag="VE968_04965"
     CDS             2095..2502
                     /locus_tag="VE968_04965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HZU51210.1"
                     /translation="MIGLVLVTHGRLAAEFVTAMEHVVGPQEAIEAICIGPDDDMEGR
                     RKDIAAAINHVDQGQGVIILTDLFGGTPSNLAISLMKTENIEVIAGVNLPMLIRLEGA
                     RKVMPVHAAVAAAREAGRKYISVASEILGEAAA"
     gene            2499..2771
                     /locus_tag="VE968_04970"
     CDS             2499..2771
                     /locus_tag="VE968_04970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HZU51211.1"
                     /translation="MSAVSREVLISNRRGLHARASAKFVNLASELGTPIEVEKDGNRV
                     CGTSIMGLMMLGAAMGDTITIHVEGETANEALAKLVTLVEERFGEE"
     gene            2771..3574
                     /locus_tag="VE968_04975"
     CDS             2771..3574
                     /locus_tag="VE968_04975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010546172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HZU51212.1"
                     /translation="MPREVTAFSNTTVKLLRSLRDKKARRSEGLFLAEGLRILAEARD
                     SGKLPQIIAFSPEGARHPLAAEIIAATEQSGGDAIETSAEILAKMSGKDNPQMLLGAY
                     RQPETALEKINRTSAPLWMVAQALRDPGNIGTILRTGDAVGAGGLILVDDCADPFSVE
                     AVRASMGALFTQQIATARWAEFIAWLRAGDGQLVGTSLKATNDYLDAQYQEPCFLLIG
                     NEQQGLPGTYEEECDLLVKIPMAGRADSLNAAIAAAVMAFAVKASWRAA"
     gene            complement(3653..5017)
                     /gene="rmuC"
                     /locus_tag="VE968_04980"
     CDS             complement(3653..5017)
                     /gene="rmuC"
                     /locus_tag="VE968_04980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HZU51213.1"
                     /translation="MSLAVVAFVCLALVVGALLGWLYASRQSAAAQQAIDNLRAQAEG
                     VTKERDELRTLYADASRDLATLQADARNVDQRLKDLAESRDALVAQFRNVGDELLEKA
                     HKDFLEKAGERLSRADQQSEAKLKQLLQPVESTLKRYEEGLQRVEKEREGSYRELNKA
                     VELLRADQSSVKEETAKLVNALRSNPKTRGRWGEESLKNVLEQAGLNPYCDYRAEVSV
                     DTDDGRLRPDVIVRLPGGGHIVIDAKCSLNAYLDSCDEVDDSKRLLHLRSHLNSVKSH
                     VQKLASKSYWEQFGSTADFVVMYIPGEHFLTAALEQDARDKNDPALWDWARERRVLIA
                     TPTNLLVIARLAATYWRQDQQTREAAEIASLGKELHSRLATMAEHVASVGANLSRANN
                     AYNKMVGSLESQVLTQARRFEDHGAGSPKQIVELPMVEASPRPLTKISVRASNDDPPQ
                     IAAE"
     gene            5122..5514
                     /locus_tag="VE968_04985"
     CDS             5122..5514
                     /locus_tag="VE968_04985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006950732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-helix bundle copper-binding protein"
                     /protein_id="HZU51214.1"
                     /translation="MSIRKMIALHPDVAGHVNQPLGDAAHHLMYCARMCLSCADACAA
                     EKMDMKQCIRICLDCSDICEAAGKLSVRRTGSNEQVLREMLELCARICDECAAECEKH
                     EHEHCRLCAQMCRECAADCRLAAESIAS"
     gene            complement(5575..6123)
                     /gene="def"
                     /locus_tag="VE968_04990"
     CDS             complement(5575..6123)
                     /gene="def"
                     /locus_tag="VE968_04990"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HZU51215.1"
                     /translation="MAIRRIYETPDPVLRQISKPVETFDDALRALIADMFETMYDAPG
                     IGLAAVQVGEPIRLLVIDLQEPEDAENPESAVIKQPRVFINPEVLWHSDNEVPYTEGC
                     LSVPEQYAEVMRPDKIRARWQNEHGETFEEEIEGLLAVCLQHEMDHLNGVLFIDHLSR
                     LKRDMVLKKLAKWRKEQQKKAA"
     gene            complement(6213..6809)
                     /gene="recR"
                     /locus_tag="VE968_04995"
     CDS             complement(6213..6809)
                     /gene="recR"
                     /locus_tag="VE968_04995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019514954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HZU51216.1"
                     /translation="MASHEIEALSQALARLPGLGPRSARRAVLHLMKRRETALQPLLV
                     ALQDVAEKLSTCSLCGNVDTCDPCTICRDPRRDDKSVCVVEEVADLWALDRSRLFPGR
                     YHVLGGRLSALEGVRPEDLSIDQLIGRVAKGGIDEIVLAMNATLEGQTTAHYLAERLE
                     GYPIRLSQLAHGLPVGGELDYLDEGTLAQALRARRPIA"
     gene            6857..7756
                     /gene="fmt"
                     /locus_tag="VE968_05000"
     CDS             6857..7756
                     /gene="fmt"
                     /locus_tag="VE968_05000"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HZU51217.1"
                     /translation="MRIVFLGSPDFAVPSLRALVAAGHDVVAAYAQPPRPAGRGKADR
                     KTQVHAVAEQLGIEVRTPRTLRDAEEQDKFRALHADLAVVAAYGLILPKPILEAPRQG
                     CVNVHASLLPRWRGAAPIQRAILAGDPVTGVTLMQMDEGLDTGPMLLKRELMIDKKNA
                     GQVTKELAYIGADALISWLENPSPPRPQPSEGMTYAAKIDKAETRINWSKPATDIERA
                     SRAFNPVPGAWFEVNGERIKLLAAEVIDRTGRPGEVVDDCLCIATGEGAIRPLSVQRG
                     GRAAMDAAELLRGFPIAQGTILS"
     gene            7753..8499
                     /gene="truA"
                     /locus_tag="VE968_05005"
     CDS             7753..8499
                     /gene="truA"
                     /locus_tag="VE968_05005"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017669120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HZU51218.1"
                     /translation="MTRWRLTIEYNGSPFMGWQRQDHGPSVQETLEEALEHITGEKSV
                     FTAAGRTDAGVHALAMAAHVDVERSITAHRLREGLNALVRPNPISIIDAEAVPGDWHA
                     RFSCVGRRYLYRILNRRAPPALDAGRVWHMAVPLDIEAMREGAAHLLGRHDFTTFRSA
                     QCQSQSPLKTLDQLDVVVSGDEVHVIASARSFLHHQVRSMVGCLAMVGRGQWAADDIR
                     KALEARDRAALGFNAPSHGLYFVGAIYPSL"
     gene            complement(8590..9819)
                     /locus_tag="VE968_05010"
     CDS             complement(8590..9819)
                     /locus_tag="VE968_05010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase, exosortase A
                     system-associated"
                     /protein_id="HZU51219.1"
                     /translation="MKPAGPIPPYFSADDRGQLLIGGRSCDELVAEAGRTPLFVYDNN
                     IVGAQIARFKGAMPDGISLFYSVSANPYQPLLEFLGRYVDGFRIVSVGELKLLEQAKL
                     AGLPINFAGPAKLDSELDEAVRTGATISIESEGDARRAIAAAERARITPRICVRVTPP
                     FTIEAGRIAAGQAPSPFGVDAERVPGLVCALLEAGADWRGLHMFSGVQCLDAETLSEV
                     YRLSLECSGEIAGTIGRPIPEINLGSGFDVPCAAGDEPLDVDAVARNLNRTLCETSPL
                     LATTRFTIELGRWLVGECGVYLTRIIDRSESGGRIFLATDGGGHHFMRATGMLGERGT
                     VSFPIGIANRFNAPVDEEVSVTGCLCTPFDVLGDEIGLPHADVGDLVAVFCAGAYGLT
                     ASPQAWESRPPARELLV"
     gene            complement(9843..>10298)
                     /locus_tag="VE968_05015"
     CDS             complement(9843..>10298)
                     /locus_tag="VE968_05015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HZU51220.1"
                     /translation="HDVTLIHRRDSLRAEKILQDRLFANANINIVWDSEVVEFVGGGM
                     PEALIGLDIRNRRTGEISRIECEGAFVAIGHEPATELFKGQLALDEDGYILVEPGSTR
                     TSVEGVFACGDVMDKVYRQAVTAAGTGCMAALDAEKYLAAREYEAIAAE"
BASE COUNT         2066 a         3128 c         3060 g         2044 t
ORIGIN      
        1 catgagccag tcactgcggc accggatcga caagatcgag gcgtttgccg ccgatgtcac
       61 tcacgaactc aagaacccac tcgcttcgct gcggtcggcg atagacgggc tcgaccgggt
      121 tgaggatccg gctcttcgag agaagctcaa ggcgatcgtc cgcgaagacg tggcgcgctt
      181 ggaccggctt attggcgaca tcagcgaagc agcgcgaacc gatgccgagc tctcccgtgc
      241 gacctttgag cgcgtcgatc tcggcgcggt cgttaagcag ctcgcggaga gttgggaaac
      301 tcgcagggaa aagggcaccg cccgaatcgc ctttgcacga ccaaggaagg aaagcgcggt
      361 agtcatgggc aagccagatc ggctcgcccg cgcgatcaac gcgatcatcg acaacgccgt
      421 gagcttctcg cccccggggg gtctcgtcga aatcgtggtc gcacgcgttg gcgacgacgt
      481 ccgagtccga attgatgacg aaggacctgg ggttccgcct gacgcgcgtg aggctatttt
      541 taaccgcttc cattcagtac gtccggagag cgaaaagttc gggcggcatt cgggtctcgg
      601 ccttgctatc gcccaggcaa tcgtgaatgg ccatgatgga gagattgacg tgcaggaccg
      661 cgatgacgct ccttcgggtg cgcgctttac tatcaaactc ccggcggcag accgcgaatg
      721 aatccgatga atccgacacc tggcccgcgc ctcagtgccg aaacggtgca tggcagcacc
      781 gttgcaagca atggtcgcgc agtgctgatc accggtccat caggttctgg gaaatcggat
      841 ctcgcgctgc gtctgatcga tcgcggattc acgctcgtca gcgatgatca aacaatcgtt
      901 cgaaaggacg gcagtcgcct cctcgcatcg gcgccaccaa ccatcgctgg caagctcgaa
      961 atccgaggca ttggtatcgt cgaaatggaa cgagcggaca acgtaccggt tgcgctcatc
     1021 gtggagttga cgagcgacat ccggcgtctt cctgatgaca gccgtgagcg gccgatcctc
     1081 ggcgtccaac tgcctttggt tacgattgac gccatgacgg cgtccgcagc ttcaaaggtg
     1141 tcggtcgccc tcgaccgcat gggcattcga ttctgatgag ttcagcgcgg cggctgccgc
     1201 gcctgctgct cgtcaccggc atgtccgggg cgggcaaatc gaccgtcctt gatgctttgg
     1261 aagacatggg ctgggaagtc gtcgataact tgccagccga tctggtccag gaatttgtct
     1321 acggcggcgg ccagagaacg gccaatgtgg cgatcggaat ggacgttcga agtcgagggt
     1381 tcgacccgga gaccttgggt gacttcatcc actcgattga aggcgttgaa ccggaactgc
     1441 tttatctcga ttcatccagc agtgaactga tccggagata tgacgagacc aggcgtcgtc
     1501 atcccctcgc gcccgacagg ccagcagagg acgggatcgc gcaggaacgg cagctgacgt
     1561 ggccgctacg cacggctgcg gacagcatta tcgatacaac cgacttttcg cctgccgaat
     1621 tgcgcgacga actgaggcgc cggttcggcg gcgattcgga ccagccggtc ctcacgatct
     1681 catccttttc ctttgctcgc gggatttccc gcaccgccga cctggtgttt gacctaaggt
     1741 tccttcccaa cccccactgg atcgaggaat tgcgcccgtt gacgggcgct gacgagcccg
     1801 ttcgttccta tctggaacag gccgagggct ggaccgacgc aatcgaacgc attgaatcgc
     1861 ttctcatcga ctggattccc cgctactggg ccgcgggcaa aagttacgtg accgttgcat
     1921 tcggttgtac gggagggcga caccggtcgg tggccgcagc agtcgaaatg gcggaacggt
     1981 tagggcgtgc cggatttgca cccaatgtcc gtcaccgtga tctcgctcca aggtcgaggg
     2041 acacgttcga acggcaatct gggcgcgctc cggggagcga ggtaagttga gtcgatgatc
     2101 ggactagtgt tggtgaccca tggccgtctc gcggccgagt tcgtcaccgc aatggaacat
     2161 gtagttggtc cgcaggaagc gatcgaagcg atctgcatcg gaccggatga cgatatggaa
     2221 gggcgccgca aggatattgc ggcagcgatc aatcacgtcg accagggcca gggagtcata
     2281 atcctcaccg acctgttcgg cggtactccg tccaatcttg cgatcagtct catgaagacc
     2341 gagaacatcg aggtgatcgc gggcgtgaac cttccgatgc tgatcaggct tgaaggcgcg
     2401 cgcaaggtga tgccggtcca cgcggcggtc gcagccgcgc gcgaggccgg acgcaaatac
     2461 atttccgttg cctccgaaat cctcggggaa gcggcggctt gagcgcagtc agccgcgagg
     2521 tcctcatctc gaatcggcgc ggccttcatg cgcgggcaag cgcgaaattc gtcaaccttg
     2581 caagcgagct tggaacgccg atcgaggtcg aaaaggacgg taaccgcgtt tgcggaacat
     2641 cgatcatggg tctcatgatg cttggtgcag caatgggcga cacgatcacc atccatgtcg
     2701 agggcgagac ggcaaacgag gcgcttgcga agctcgtcac gctcgtagag gagcggttcg
     2761 gggaggaata atgccccgcg aagtcaccgc tttttccaat acaaccgtca agttgttgcg
     2821 ctcgctacgc gacaagaagg cccgccgctc cgagggtctc ttcctcgccg aaggcctaag
     2881 gatcctggct gaagcacggg atagcggcaa gctcccgcaa atcattgcat tttcacccga
     2941 aggcgcaagg cacccgcttg ctgctgaaat catcgcggcg accgaacaat cggggggcga
     3001 tgcaatcgag accagcgccg aaatccttgc caagatgtcg ggcaaagata atccgcagat
     3061 gcttctcggc gcctatcggc aacccgagac ggcgctcgag aagattaatc gcacaagtgc
     3121 gccgctctgg atggttgctc aggcgctgag ggaccccggc aatatcggca cgatcctcag
     3181 gaccggggat gcggttggcg ccggtggatt gatattggtc gacgactgcg ctgatccatt
     3241 ttccgtcgaa gcggtgaggg cgtcgatggg cgcgctgttt acgcagcaaa ttgcgaccgc
     3301 gcgatgggcc gagttcatcg cctggctccg cgccggcgac ggccagctcg tcggcaccag
     3361 cctcaaagcc acgaacgact atcttgacgc tcaatatcag gaaccgtgtt tccttctcat
     3421 tggcaacgaa cagcagggac tgccaggaac gtacgaggaa gaatgcgacc ttctcgtgaa
     3481 aattccgatg gcgggacgcg ctgacagcct caacgccgcg atagccgcgg ccgtgatggc
     3541 ctttgcggtc aaggcaagct ggcgcgcggc ttgacgtcca tgactgtaac acccgcgcca
     3601 aaaccgctga acgtacttac gtgcgcacaa ggacggccgc ttcgcgatca atctattccg
     3661 cggcaatttg cggtggatca tcgttcgacg ccctgacgct gatcttggtc agcggtcgcg
     3721 ggctagcctc caccatcggc agttcgacga tctgcttggg acttcctgct ccatgatctt
     3781 cgaatcgtcg cgcctgcgtg aggacctggc tttcgaggct tccgaccatc ttgttgtacg
     3841 cgttattggc gcggctgaga tttgcgccga ccgacgcgac atgctccgcc atcgtcgcca
     3901 ggcgcgaatg aagctctttt ccgagacttg cgatctccgc cgcttcacgt gtctgttggt
     3961 cctgtcgcca ataagtcgcg gcgaggcgcg caatcacgag gagattcgtg ggtgtcgcga
     4021 ttaggacgcg gcgttcacgg gcccagtccc acagcgctgg atcattcttg tccctcgcat
     4081 cctgttccaa cgccgccgtc aggaaatgct ctccgggaat gtacatgacg acaaagtcgg
     4141 ccgtgctccc aaactgttcc caataggatt tggaagcgag cttctgcacg tgcgacttaa
     4201 ccgagttcag atggctcctg agatggagga gacgcttgga atcatcgacc tcgtcgcatg
     4261 aatcgagata cgcgttgagc gagcacttcg catcgatgac aatgtggccg ccgcccggca
     4321 accgaacaat cacgtccgga cgcagtcggc cgtcatccgt gtcgaccgat acctcagcgc
     4381 gataatcgca atacggattg agacccgcct gctccaaaac gttcttgaga ctttcttcgc
     4441 cccagcggcc gcgagtcttc ggattggagc gaagcgcatt cactagcttg gctgtttcct
     4501 ctttgactga tgattggtcc gcccgcagga gttcgacggc cttgttcagc tcgcgatagc
     4561 taccctcccg ctccttctcg acccgttgca gtccctcctc gtatcgtttg agcgtacttt
     4621 caacaggttg cagaagctgc ttgagcttcg cttcgctctg ctggtcggcc cgggacaagc
     4681 gctctcccgc cttctcgagg aagtccttgt gcgccttttc aagcagttcg tcgccgacgt
     4741 tccggaattg cgcaacgagc gcatcacgag actcggcaag atccttcagc cgctgatcga
     4801 cgttgcgcgc atccgcctgc agagtggcaa gatcacgact ggcatcggca taaagggtcc
     4861 gcagctcgtc acgctccttc gtcactcctt cggcctgcgc acgaagatta tcgatcgctt
     4921 gttgggctgc ggccgattgc cggctggcgt aaagccaacc gagaagtgcg ccaaccacga
     4981 gcgcaagaca gacaaacgcg acaacagcca ggctcatggc tcaactcctg cggaacagaa
     5041 agcgaactta cgcctggtca gtttccgcga caagcggaac ggatcgcgct atccacaggt
     5101 ttgccccatc gggagaacgc catgtccatt cgcaagatga tcgcactgca ccctgacgtt
     5161 gctggtcacg tcaaccagcc gcttggcgat gccgcgcatc acttaatgta ttgtgcgcga
     5221 atgtgcctca gctgcgccga cgcatgcgcc gcagagaaaa tggacatgaa gcagtgcatt
     5281 cggatctgtc tcgactgctc ggacatttgc gaagctgcgg ggaaactttc cgttcgacga
     5341 acggggagca atgaacaagt cctccgcgaa atgctcgagt tgtgcgcacg aatttgcgac
     5401 gaatgcgccg cggagtgcga gaagcacgag cacgaacatt gccgcttgtg cgcccagatg
     5461 tgccgcgaat gtgccgccga ctgccgactt gcggcggagt ccatcgcgag ctgaccaacg
     5521 gtccggctcc tattcattga gcgccagctc gccagagccc ctagcgccgg cttatcatgc
     5581 agcctttttt tgttgttcct tccgccactt ggcaagcttc tttagaacca tgtcgcgctt
     5641 tagccgggag agatggtcga tgaagagaac gccgttcaga tggtccattt cgtgttgaag
     5701 gcacaccgcg agaaggcctt cgatttcctc ttcgaacgtt tcgccgtgct cattctgcca
     5761 gcgggcacga attttgtcgg gccgcatcac ctcggcatat tgctccggta ctgacaagca
     5821 gccctcggtg taggggactt cattgtccga gtgccacaga acctccgggt ttatgaaaac
     5881 gcgtggctgc ttgatgaccg cgctctcggg attttcggcg tcttcgggct cctgcaggtc
     5941 gatcacgaga agacgaatgg gttcgccgac ctgcaccgcc gcaagcccaa taccgggcgc
     6001 gtcgtacatg gtctcgaaca tgtcggcgat gagcgctctc aacgcgtcat cgaacgtctc
     6061 caccggctta ctgatttgcc tgaggacagg atccggagtc tcgtaaatgc ggcgaatggc
     6121 catggcaggg atttaggtcg gccccgctgc cgccgcaagg gagcgggcaa acgcatgagg
     6181 gtcatggttc agcggcttgc attaaggaac cttcaggcga ttggccgacg cgcgcgcagc
     6241 gcttgcgcaa gtgttccctc atcgaggtag tcgagctcac cgccaacggg aagtccatga
     6301 gctaactggc tgagacgtat cggatatccc tcgaggcgtt cggcgagata gtgggccgtg
     6361 gtctgccctt ccaaggtggc gttcattgca agcactatct cgtcgattcc cccctttgcg
     6421 acacggccga tgagctggtc gatgctgagg tcttccggcc ggacgccttc gagcgccgag
     6481 aggcgaccac caaggacgtg gtaacgcccc gggaaaagcc gcgagcgatc gagcgcccac
     6541 agatcagcca cctcctcgac gacacacacc gacttgtcgt cacggcgcgg gtcgcggcag
     6601 attgtacacg gatcacaggt gtcgacattc ccgcacagcg aacaggttga tagtttttcg
     6661 gcaacgtcct gtagtgcaac gaggagcggc tgcagtgccg tttcgcgccg tttcatgagg
     6721 tgcagcacgg cacgacgggc ggatcttggc ccaagacccg gaaggcgcgc cagcgcctgg
     6781 ctcaacgctt cgatttcatg actagccact atgcgctgag gtaggcaatt cgacgagctt
     6841 tcgccatagg cgtgcgatgc gcatcgtctt cctcggatcg ccggattttg ccgtcccctc
     6901 gctgagggcg ctggttgcgg ccggtcatga cgtcgtcgcg gcttacgcgc agccaccgcg
     6961 cccggcgggg cgcggaaagg ctgaccgtaa gacgcaggtc catgcggtcg ctgaacagct
     7021 tgggatcgag gtccgcacgc ctcgaaccct gagggatgcc gaggaacaag ataagtttcg
     7081 agcgcttcac gcggatctcg ccgtcgtcgc ggcgtacgga ttgatcctcc cgaagccgat
     7141 tctcgaagca ccgcgacaag gctgcgtaaa cgtccatgct tcgctacttc cacgctggcg
     7201 aggcgctgct cccatccagc gcgcgattct tgctggtgat ccggtcaccg gcgtcaccct
     7261 catgcagatg gatgaagggc tcgacactgg accgatgctg ctcaagcggg aactcatgat
     7321 cgacaagaaa aacgctggcc aagtcaccaa agagcttgcg tatatcggcg ccgatgcgtt
     7381 gatctcctgg ttggaaaacc cgtctcctcc tcggccacag ccgagcgagg gaatgaccta
     7441 tgccgcaaaa atcgacaaag ccgagacgcg aataaattgg tcaaaaccgg cgaccgacat
     7501 cgagcgagcg tcacgggcat tcaatcccgt tccaggagcg tggttcgagg ttaatggtga
     7561 acgcatcaag cttctcgcag ccgaggtcat cgatcgcaca gggaggcccg gcgaagtcgt
     7621 cgatgactgt ctgtgcatcg cgaccggcga aggagcaatc cggccgctct cggtgcagcg
     7681 cggcggtcgc gccgcaatgg atgcagccga gctcctgcga ggctttccaa tcgctcaagg
     7741 aacgatcctc tcgtgacaag gtggcgattg acgatcgaat ataacggcag cccattcatg
     7801 ggatggcagc ggcaggacca cggaccatcc gttcaagaga ccctcgagga agcactcgag
     7861 catataaccg gcgagaaatc ggtgttcacg gccgccgggc gcacggatgc cggcgtccat
     7921 gcgcttgcca tggctgccca tgtcgacgtc gaaaggagca ttacggcaca tcggctacgt
     7981 gagggcttaa acgcgctcgt tcggccaaat cccatctcca tcatcgatgc cgaagctgtt
     8041 cctggcgact ggcacgcgcg cttttcgtgc gttggccgtc ggtatctcta ccgtatcctc
     8101 aatcgccgcg ctccgccggc gcttgacgcg ggtcgcgtat ggcacatggc ggtgccactc
     8161 gacatcgagg ccatgcgcga aggcgccgcc cacctcttgg gacgacatga cttcacgaca
     8221 tttcggtccg cgcaatgtca gtcgcaaagc ccgctgaaga cgctcgatca actcgatgtc
     8281 gtggtttctg gcgacgaggt ccacgtcatt gcttcggcgc ggagcttcct tcaccatcaa
     8341 gtgcgttcca tggtgggttg cctcgcgatg gtcggtcgcg gccagtgggc cgccgacgat
     8401 attcgcaagg cactcgaagc tcgagatcgc gcggcgctcg gcttcaacgc tccttcacac
     8461 gggctctatt ttgtaggagc gatctaccca tcgctctaac cgcgagcatc cgcagcttgg
     8521 ctgacgctta gctgatcatc gaaggggcaa gtctcgacag gcggataggc gggggagccc
     8581 cttgccgatc taaaccaaca gctcgcgtgc cggtggtcgg ctttcccatg cctgtggact
     8641 ggcagtgagc ccgtatgcgc ccgcgcagaa gaccgccaca agatcaccaa cgtcggcgtg
     8701 tggaagtcca atctcgtcgc cgagcacgtc gaatggcgtg cacaggcaac cggtcacgct
     8761 tacctcttca tcaacaggag cgttgaacct gttcgcaatg ccgatcggaa aactcaccgt
     8821 tccacgttcg ccgagcatac cagttgcgcg catgaaatga tgcccgccac catccgtcgc
     8881 gaggaatatt cggccaccgc tttccgatcg gtcgatgatc cttgttaaat agacgccgca
     8941 ctctccaaca agccaccgcc cgagttcgat cgtgaagcgg gtagtcgcaa gtaagggtga
     9001 cgtctcgcac agcgttcgat tgagattcct tgcgaccgcg tcgacatcga gcggttcatc
     9061 gccggcagcg caaggcacgt cgaacccgct accaaggttt atttccggga ttggccgacc
     9121 gatcgtaccg gcaatttccc ctgaacattc caagcttaat cgatatacct cagaaagcgt
     9181 ctcagcatcc aggcattgga ctccgctaaa catgtgaagc cctcgccagt cggcgccggc
     9241 ctccagcagc gcacaaacaa gtccaggcac tcgctcggcg tcaacgccga atggacttgg
     9301 tgcctgaccc gcagcaatac gtcccgcttc gatcgtgaac ggaggggtta cgcgaacgca
     9361 gattcgcggc gtgatgcgtg cgcgttccgc ggccgcaatt gcccgccgcg catcgccctc
     9421 actctcgatg ctaatcgttg cacctgttct caccgcttca tcgagttcgc tgtcgagctt
     9481 cgcgggtccg gcgaagttga ttggcaatcc agcaagcttt gcctgctcga ggagcttcaa
     9541 ctcgccgacc gagacgattc gaaatccatc gacataccgc ccgagaaact cgagcagcgg
     9601 ctggtaggga tttgcactga cggaataaaa tagcgaaatc ccgtccggca tcgctccctt
     9661 gaaccgtgcg atctgggcac cgacgatatt gttgtcgtag acgaacaggg gcgtccggcc
     9721 cgcttcggcg acaagttcat cgcaagaacg tccaccgatg agcaattgcc cacggtcatc
     9781 ggcactgaaa taaggtggga tcggtccggc tggcttcact ggcgaccccc tttttgctct
     9841 gcctactcgg cggctattgc ctcatattcc cgggctgcga gatatttctc ggcatcgagt
     9901 gctgccatgc aaccggtccc ggcagcagta actgcctgtc ggtagacctt gtccatgacg
     9961 tcaccgcagg caaatacgcc ctcgacgctc gttcgcgttg agccaggctc gaccagtatg
    10021 tacccgtctt cgtcgagcgc cagctgtcct ttgaacaact cggttgcagg ttcatggcca
    10081 attgcaacga aagcgccttc gcactcgatc cgactgattt cgccagttcg tctgttgcgg
    10141 atgtcgagcc caatcagcgc ttcgggcata ccgccgccaa cgaactcaac tacttcgctg
    10201 tcccagacga tgttgatgtt cgcgttggca aacagccgat cctggaggat tttctcggca
    10261 cgaagggagt cgcgccggtg gatcaaggtg acgtcatg
//
LOCUS       DASRBJ010000178         4172 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_18082,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000178 DASRBJ010000000
VERSION     DASRBJ010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4172
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18082"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..746
                     /locus_tag="VE968_05020"
     CDS             <1..746
                     /locus_tag="VE968_05020"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HZU51221.1"
                     /translation="TLRRIGRYDVESGRDLSTQVSDHGDVPVSNLSIEEATPLIANAV
                     RSSAARHELTILVGGNNAITRPGVLGLGLPLASIGLVTLDAHFDMRDLDEGLGNGNPV
                     RALIEDGLPGTNIAQVGLASFANSRKMHDDALAAGNLVVTIDEVRRSGISRAVDRALR
                     HVRHCEALVVDCDIDVMDRAQFPGAPGARPGGMAVHDFFVAVRRLASERRVRLIDLTE
                     WDPPLDPSDLSALTAARWFAECLAGFELR"
     gene            complement(978..1331)
                     /locus_tag="VE968_05025"
     CDS             complement(978..1331)
                     /locus_tag="VE968_05025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51222.1"
                     /translation="MNLSGRVKLVSQLLDLPIIDKDEQWCGIVDDVELEVGARMQVRV
                     KALLTGPGAYEGRMPAWIYFIVRRLAGDRIVRVPAEEIAEIGPVVKLKSRADQLKLNA
                     VEEKLRQWIPRVGAM"
     gene            complement(1328..2563)
                     /locus_tag="VE968_05030"
     CDS             complement(1328..2563)
                     /locus_tag="VE968_05030"
                     /inference="COORDINATES: protein motif:HMM:NF013715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HZU51223.1"
                     /translation="MNPLELTLGIMTAVGGFVDISQLVFSAQAGSLFGYALIAAFAIS
                     TLGIMVFGEMCGRVAAVAHQPVFSLIRHRLGLNLGLFTLGASVFSTVITCAAEVGGMG
                     LILNLLTGAPYRLMCVTSVLLLIASMWILPFKWIERSFGLLGLFMIIFLVALVALHPP
                     WEQVANGFVPQVPHGLSPKKLLTYAYFVVAIFSAVMFPYEAYFYSSGGIEERWGPKDL
                     LTNRVTSIVGMALGTLLSIAIVAIAAQIFAPVNVGPVTPGSVALQGAIPFGKTGLVLA
                     LLGMFFAVAGAAVETGMASAYSIAQFFGWEWGRRKKPWEAPRFTLTWILVMLIAVAVV
                     LSGMAVMDLVNYSIVFSIVVLPLSYFPLMLLASDKSYMGSYANKWLANGLGWTFLLIV
                     TIAAIAAVPLYLLTSGGQA"
     gene            complement(2550..2828)
                     /locus_tag="VE968_05035"
     CDS             complement(2550..2828)
                     /locus_tag="VE968_05035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51224.1"
                     /translation="MPSIGEARSLAAEWALVNEQAAKGHLTQTYVETMHDQLRQQLQS
                     AQRSLANPNSGYGREIRALMRLPDNATPAALRVHVGKIRQIEESLESA"
     gene            complement(2927..3517)
                     /locus_tag="VE968_05040"
     CDS             complement(2927..3517)
                     /locus_tag="VE968_05040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate-dependent dioxygenase AlkB"
                     /protein_id="HZU51225.1"
                     /translation="MSQTELFAAPILGGLRYLPQIITDDEQDQLIAKLSSVELEPFRF
                     HGWLGNRKTKTYGWRYDFDDASFAPAEPIPDWLADLRAKAGAFAGIEDNEFAHVLLAR
                     YDPGAGIGWHRDRPQFENVVGVSLGSLATMRFRQRTSEGFRRTKIELEPRSAYLLSGP
                     SRWEWEHSIAPGDRLRFSITFRTLSRKGREIATHHG"
     gene            complement(3514..>4172)
                     /locus_tag="VE968_05045"
     CDS             complement(3514..>4172)
                     /locus_tag="VE968_05045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014075363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HZU51226.1"
                     /translation="DGKMLTDLPQSQRRQRLERFFRANEAPRLHLSPMTRDRRAALGW
                     LQRSGGALDGVIAKRIDFEYRSGERAMVKVKQQRTADCVVGGFRYAEKKREVGSLLLG
                     LYDAEGRLDHVGFTSAIPASERRALTSKLERLIEPPGFTGSAPGGPSRWNTARSMAWE
                     PLKPVLVVEVRYDQVTGRRFRHGTGFLRWRPDKDPEQCTFAQLAPELRPSELKELFAT
                     "
BASE COUNT          858 a         1283 c         1223 g          808 t
ORIGIN      
        1 agactttgcg ccgcatcgga cgctatgacg tcgaaagtgg gcgcgaccta tcaactcaag
       61 tttccgatca cggcgacgtc ccggtcagca acctttcgat cgaggaggca acgccgctta
      121 tcgctaacgc tgtcagaagc agcgctgcgc ggcacgagct aaccattctc gtgggaggaa
      181 acaacgcgat tactcgaccc ggcgttcttg gccttgggct tccactcgca agcattggcc
      241 tcgtcacgct cgacgctcat ttcgacatgc gggatctcga cgaggggctc ggtaatggca
      301 atccggttcg cgccctcatc gaggatggat tgccggggac aaatatcgcg caggtcgggc
      361 tggcgagctt cgccaacagc cgcaaaatgc atgatgatgc gctcgctgcc ggcaatctcg
      421 ttgtaacgat cgatgaagtg cgccgctcgg gcatcagccg ggcagttgat cgagcacttc
      481 gccacgtgcg gcattgcgaa gcacttgtcg tcgattgcga catcgacgtg atggatcgag
      541 cgcagtttcc aggtgcgccc ggcgcgcggc ccggcggaat ggccgttcac gacttcttcg
      601 ttgcggttcg tcggctcgcg tccgaacggc gcgttcggct gatcgatctc accgagtggg
      661 atcctccact cgacccgagc gaccttagcg ctttgactgc tgcgcgctgg ttcgccgagt
      721 gcctcgccgg gttcgagttg cggtaactcg ttgtggcgga tcgggcgtca ccacgatttg
      781 gttgtgttcg atgcggcaga cgcattccca gggtatccgc ctccctcgcg tcttcgctgt
      841 tagcctttca atgagacttc ctgggccgca ggtgaccgcc gtcacccggc cattttccga
      901 atgaacctca tgcacgcgcc cgagcatctg cccgtcgagc gtcttcactt tggcgtcgcg
      961 gagttccgaa agcttcttca cattgccccc acccgcggga tccactggcg cagcttctcc
     1021 tctaccgcat tgagtttcag ctggtctgct cggctcttga gcttcaccac gggtccaatt
     1081 tcagcaattt cttccgccgg cactcggacg atccggtcac cggccagtcg gcggacgatg
     1141 aagtaaatcc acgccggcat gcggccctcg taggcgcctg gcccagtgag cagtgccttg
     1201 acgcgcactt gcattcgagc tccaacctcg agctcgacat cgtccactat cccgcaccac
     1261 tgctcatcct tgtcgatgat tggaaggtcc agaagctgac tcaccagctt gacgcgcccc
     1321 gaaaggttca tgcctgccct cccgacgtta gcaggtagag tggaactgcg gcgattgcag
     1381 cgatcgtcac tatcagcaag aatgtccagc caaggccgtt cgccagccac ttgtttgcgt
     1441 aacttcccat gtagctcttg tcgctagcaa gcagcatcag aggaaagtag ctgagcggca
     1501 agacgacgat cgagaacacg atcgaataat tgacgaggtc catgaccgcc atgccgctga
     1561 ggactacggc aactgcgatc agcatgacga ggatccaggt aagcgtgaac cgcggcgctt
     1621 cccagggttt cttgcgacga ccccattccc atccaaagaa ctgcgcgatt gaataagcac
     1681 tcgccatgcc tgtctctacc gcggcaccgg caacggcgaa gaacatgccg agcagtgcga
     1741 gaaccaagcc ggtcttgcca aacgggattg cgccctggag tgcgacgctt cccggggtta
     1801 ccggaccaac attcacgggc gcgaaaattt gcgcggcgat cgccacaatg gcgatcgaga
     1861 gaagagttcc caaggccatg ccgacgatgc tcgttacgcg gttcgtcagg agatccttgg
     1921 gaccccaacg ctcttcaatc ccgcccgatg agtagaaata ggcctcgtac ggaaacatca
     1981 cggcgctgaa gatcgcgaca acgaaatagg cgtaagtgag gagcttcttc ggcgaaaggc
     2041 catgtggcac ctgcggaacg aaaccgttgg caacctgctc ccacggcgga tggagtgcga
     2101 cgagtgcgac caagaagatg atcatgaaca ggccgagcaa tccaaaactt cgctcgatcc
     2161 acttgaatgg gaggatccac atcgaggcaa tcaggagcag aacactcgtg acgcacatca
     2221 gccggtacgg agctcccgtc agcaaattga ggatcaatcc catcccgccg acttctgcag
     2281 cgcatgtaat tactgtgctg aaaaccgagg ctcccagcgt gaacagtcca aggttaagcc
     2341 cgaggcggtg tcgaatgaga ctgaacacgg gttggtgggc gaccgccgcg acacgaccgc
     2401 acatctcgcc gaaaaccatg atgccaagcg tcgagattgc gaacgcggcg atgagtgcat
     2461 agccaaagag cgatccagcc tgcgccgaga atacaagttg actgatgtcg acgaagccgc
     2521 cgacggcggt catgatcccc aaggtcagct caagcggatt caagactttc ctcgatctgc
     2581 ctgatcttgc cgacgtgcac gcgcagagcc gcgggggtag cattgtccgg caaccgcatc
     2641 agcgcccgta tttcacgacc gtagccgcta ttggggttag cgagcgaacg ttgcgccgac
     2701 tgcaactgct gccgcagctg gtcgtgcatg gtttcgacat aggtctgcgt aaggtggccc
     2761 ttggccgctt gttcgttgac gagcgcccat tcggccgcca acgaccgagc ttcgccgatg
     2821 gaaggcaagt cggcgtcagg gcctttggaa cagctccaga gcagcaacgc aaacaacggt
     2881 cccaagcgca tgcgcgcaca accgtttcgg tggcggaccg ttcccgtcag ccatggtggg
     2941 tcgcaatttc gcgtcccttt cgcgacagcg tccggaaggt gatggaaaag cgcaaccggt
     3001 cgcccggtgc gatgctatgt tcccattccc accgtgacgg cccggaaagc agataggcgg
     3061 aacgaggctc aagctcgatt ttcgtacgtc gaaagccttc gcttgtgcgc tgtcggaacc
     3121 gcatggtcgc aagcgatccc aatgagacac caacgacgtt ttcaaactgt gggcgatcgc
     3181 gatgccatcc tattcctgct ccgggatcgt agcgtgcaag aagcacatga gcgaattcat
     3241 tgtcctcgat cccggcaaac gctccagctt tcgcacgcaa gtcagccagc caatcgggaa
     3301 tcggctctgc tggggcaaaa ctcgcgtcat cgaagtcgta acgccagccg taagtcttcg
     3361 tcttgcggtt gccgagccac ccgtgaaagc gaaacggttc gagttcgacc gaagagagct
     3421 tcgcaatcaa ctgatcctgc tcgtcgtcgg tgatgatttg cggcaggtag cgcaggcctc
     3481 caaggatcgg cgccgcgaac agttcggtct ggctcatgtc gcgaaaagct ctttaagctc
     3541 ggacggtcta agctcaggcg caagctgcgc aaaggtgcat tgctctgggt ccttgtctgg
     3601 tcgccaccgc aggaagccgg tcccgtggcg aaaccgccga cccgtcacct ggtcatagcg
     3661 cacctctacc acgaggacgg gcttaagcgg ctcccacgcc attgagcggg ccgtgttcca
     3721 ccggcttgga ccacctggcg cacttccggt aaagccgggc ggctcgataa gacgctcgag
     3781 cttgctggtg agcgctcgtc gctcggatgc gggtatggcg gaggtaaatc ccacatggtc
     3841 gaggcgacct tcagcatcat ataggcccaa cagcagcgac ccgacctcgc gctttttttc
     3901 cgcgtagcgg aagcctccga caacacagtc ggcggtgcgc tgctgcttca cctttaccat
     3961 tgcgcgttcg cccgagcgat attcgaagtc gatgcgcttt gcgatgactc catcgagggc
     4021 accaccgctt cgttggagcc accccaaggc tgcgcggcga tcacgggtca tcggagacag
     4081 gtgaaggcgc ggcgcttcat tggcgcggaa gaagcgttcg agccgctgtc gccgctgcga
     4141 ctgcggcaga tccgtgagca tcttaccgtc ga
//
LOCUS       DASRBJ010000179         2312 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_273090,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000179 DASRBJ010000000
VERSION     DASRBJ010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2312)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2312)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2312
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273090"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..795)
                     /locus_tag="VE968_05050"
     CDS             complement(<1..795)
                     /locus_tag="VE968_05050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006963284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl phosphate synthase large subunit"
                     /protein_id="HZU51227.1"
                     /translation="MPKRTDISSILIIGAGPIVIGQAAEFDYSGSQAVKALKAEGYRV
                     IVVNSNPATIMTDPELADATYIEPITPEVVAKILEKERPDAVLPTMGGQTALNTALAL
                     FKNGTLERLGIELIGANAEAIEKAEDRLKFREAMDRIGLESPRSAIAHSLDEALAGLD
                     RVGLPAIIRPSFTLGGTGGGIAYNRDEFVRIVTGGLEASPTTEVLIEESVLGWKEYEM
                     EVVRDRADNAIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQRMR"
     gene            complement(795..1061)
                     /locus_tag="VE968_05055"
     CDS             complement(795..1061)
                     /locus_tag="VE968_05055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51228.1"
                     /translation="MKRLASAAAMVPLAACATSAQMHSEEQLNKVALGCGLALGELIQ
                     DSSEKKLLLTVHEDASAEQRLCVLKWARRNGLKAVFVNMQFPAA"
     gene            complement(1058..2227)
                     /gene="carA"
                     /locus_tag="VE968_05060"
     CDS             complement(1058..2227)
                     /gene="carA"
                     /locus_tag="VE968_05060"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HZU51229.1"
                     /translation="MADARPLHAPAPEGATGVIMFADGRTAWGVGFGAEGEAVGELCF
                     NTAMTGYQEVMTDPSYAKQIITFTFPHIGNVGANEEDVEAGEAHAIGCLVREAVTDPS
                     NYRASQDFAEWMAKSGRIGIAGVDTRALTKLVRNEGPPTVAIAHRSDGKFDLEKLRSM
                     AAAWPGLEGMDLAKDVSRRQVEQWTGGKWRWGKGYDLAGSEKDRPHVVAVDYGNKRNI
                     FRLLVEAGARVTVVPATASFDEIMSHEPDGFFLSNGPGDPAATGAYAVPVIRAMLETK
                     KPLFGICLGHQMLALAVGGRTSKMFQGHRGANHPVKRLADGKVEITSMNHGFAVEREG
                     LPENVRETHVSLFDGSNCGIELIDRPAFSVQYHPEANPGPQDSFYLFQRFVGAMK"
BASE COUNT          428 a          703 c          677 g          504 t
ORIGIN      
        1 gcgcatccgc tgatattcct tgtcggtcag cgtaagtgct ggggcgaccg tgatgctgtc
       61 gccggtgtga acccccattg gatccacatt ttcaatcgag cagatgatga tcgcgttgtc
      121 cgcacggtcg cgaacaacct ccatctcata ttctttccac ccaagcaccg actcctcaat
      181 caggacttcg gtggtcggac tggcttcaag gccgcccgtc acaatgcgca cgaactcgtc
      241 gcggttatat gcaataccgc cgccggtgcc tcccaaggtg aagctcggac ggatgattgc
      301 cggaaggccg acacgatcaa gaccggcgag tgcctcgtcg aggctgtgag cgattgccga
      361 acgggggctt tcaaggccga tcctgtccat cgcttcgcgg aacttcagtc ggtcctcggc
      421 cttttcgatc gcttccgcgt tcgcgccgat gagttcgatt ccgagccgct cgagagttcc
      481 gttcttgaac agcgctaacg cggtgttgag tgccgtctgc cctcccatcg tcggaaggac
      541 cgcatccggc cgttccttct cgagtatctt cgcgacgact tcgggtgtga ttggctcgat
      601 ataggtcgca tcggcaagtt ccggatcggt catgatcgtc gccgggttcg aattgacgac
      661 gatgacccga tagccttcgg ccttgagtgc cttcaccgct tggcttccag aatagtcgaa
      721 ttcagccgcc tgaccgatga cgattggacc tgcgccaatg attaggatcg aggatatgtc
      781 ggttcgcttg ggcattaggc cgccgggaat tgcatgttga cgaacacggc cttgaggccg
      841 ttgcgacgcg cccatttgag aacgcagagg cgttgctcgg cgcttgcatc ctcgtggacg
      901 gtcaagagaa gctttttctc actcgagtct tggatcagtt caccaagagc aagcccgcag
      961 ccgagggcga ctttgttgag ctgctcttcg ctgtgcatct gtgcggatgt cgcgcaggcg
     1021 gcgagtggga ccatcgcggc agcgctggca agtctcttca cttcattgct ccaacgaagc
     1081 gctggaagag gtagaaactg tcctgcggcc ccgggttggc ctcggggtga tattgaacac
     1141 taaaagcggg ccgatcaatg agctcgatcc cgcaattgct gccgtcgaac agcgacacgt
     1201 gggtctcgcg cacattttcg ggaagtccct cgcgttcgac cgcaaagccg tgattcatgc
     1261 tggtaatctc gactttgcca tcagcaaggc gcttcaccgg gtggttggcg ccgcgatgcc
     1321 cttggaacat cttcgacgtg cgtccgccaa ccgcgagggc aagcatttga tgcccgagac
     1381 aaatgccgaa caacggcttt ttcgtctcaa gcatcgcgcg aatgacgggc acggcataag
     1441 cgcccgtcgc ggcaggatca ccgggaccat tcgacagaaa aaatccatcg ggttcgtggc
     1501 tcatgatttc gtcgaatgaa gccgtcgccg gaacgacggt cacgcgtgca ccagcctcga
     1561 caaggagccg gaaaatgttg cgcttgttgc cgtaatcgac ggcgacgacg tgcggccggt
     1621 ccttttcgct tccggcgaga tcatagcctt tgccccagcg ccacttgccg ccggtccact
     1681 gctctacttg gcgacggctc acgtccttcg ccagatccat tccttcaagc ccgggccaag
     1741 cggctgccat ggaccgcagc ttctcaagat cgaacttgcc gtcgcttcga tgggcaattg
     1801 cgaccgtcgg tggcccctcg ttgcgaacca gtttcgttag tgcgcgcgtg tcgacgccgg
     1861 cgattccaat ccgtcccgat ttcgccatcc attcggcaaa atcttggcta gcgcggtagt
     1921 tgctggggtc ggtcaccgct tcgcggacaa ggcagccgat cgcatgggct tcaccggcct
     1981 caacgtcttc ctcattcgcg ccaacattgc cgatgtgcgg aaaggtaaaa gtgatgatct
     2041 gcttggcgta tgagggatcg gtcatcacct cctgatagcc cgtcattgcg gtattgaagc
     2101 aaagctcgcc gacggcctcg ccttcggctc caaagccgac gccccaggcc gtccttccgt
     2161 cagcaaacat gatgactccg gtcgcgccct cgggagcggg cgcgtgcaat ggtcgtgcat
     2221 cggccatggg cggagtagcc ttccgtctaa gggttaagca gcgatgtcgc taaggtgccg
     2281 ccgctatgcg ctttaacccg cgcggtcaac gt
//
LOCUS       DASRBJ010000180         2675 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_687144,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000180 DASRBJ010000000
VERSION     DASRBJ010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2675
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_687144"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..443
                     /locus_tag="VE968_05065"
     CDS             <1..443
                     /locus_tag="VE968_05065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012817157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HZU51230.1"
                     /translation="VEYGPGVGTFTKPVLERLGPDATLVTIDTNPDFTHYLKQQIDDP
                     RLIAITGSAADVESILADRHLGKADYVLSGLPFSTLPPGVGDAIAEATAKVIRPGGAF
                     LVYQFSPKVRDFIEPYFAPIKRGFEWINVPPATLFWAYKGEGER"
     gene            complement(440..1612)
                     /locus_tag="VE968_05070"
     CDS             complement(440..1612)
                     /locus_tag="VE968_05070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine/phosphatidylglycerophosphate/
                     cardiolipin synthase family protein"
                     /protein_id="HZU51231.1"
                     /translation="MADGPAQHVNARAPIAQIAGNRLELIETGEARLQLLLDLIDSAQ
                     SSVRMLMYMFNPDPVGERVRDALVAAAKRGVDVKLMVDGFGSGAPADFFTALKDAGGD
                     RCVFNPSYGRRYLMRNHQKLVLIDDKTVLIGGANIDQSYLDDGVPGHWRDLWLRLDGP
                     QARLPGEYFDTLFRWSTHARPRLNYARRRLAEYSQWRGPLQWKFSGPLSRRNSWWRSI
                     GRDIRRGQRLDMIFAYFAPPGAMLRRIGRLARRGEARIITAAKSDNNATIAAARHSYS
                     RLLRRGVQMYEYQPAKLHTKLAIVDDIVHIGSSNFDYRSLYINMEIMLRIKDAGLASA
                     MRDYFEGELTQSTRITPALHKRRANFWRRIKWAVSHFLVNVMDYTVTRRLNFRPEG"
     gene            1714..2055
                     /gene="rpoZ"
                     /locus_tag="VE968_05075"
     CDS             1714..2055
                     /gene="rpoZ"
                     /locus_tag="VE968_05075"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HZU51232.1"
                     /translation="MARVTVEDCVDKVPNRFDLVLLAAQRARQISGGADLTIDRDRDK
                     NPVVALREIADETVRPRDLQESIVSNLQKVRIDEEDETEELASLSEAAEALRLTAAAP
                     PRPTPSGGDYE"
     gene            2176..>2675
                     /gene="pdeM"
                     /locus_tag="VE968_05080"
     CDS             2176..>2675
                     /gene="pdeM"
                     /locus_tag="VE968_05080"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017183180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response
                     endonuclease PdeM"
                     /protein_id="HZU51233.1"
                     /translation="MVPFSFAGETFFPSSDGALFWPSQQALLVADLHLEKASWFARLG
                     QFLPPYDSHATLSALAGEVERTGARRLYCLGDSFHDRFGCERLPPDAREVLEELTSRL
                     DWTWIVGNHDPGFADHCGGRIEPEVELAGIILRHEALREESRPEISGHYHPKLRLHLK
                     GRRVSRR"
BASE COUNT          529 a          818 c          794 g          534 t
ORIGIN      
        1 ttgtcgaata tggtcccggc gtggggacgt ttaccaagcc cgtgctcgag cggctcggac
       61 ctgatgcgac gttggtgaca atcgacacca accccgactt cactcactat ctcaagcaac
      121 agatcgacga tccaaggctc atcgcaatca cgggctccgc cgcagacgtc gagtcgatcc
      181 tcgccgatcg gcatcttgga aaagcggact acgttctgtc cggcctgccg ttctcgacgc
      241 tcccgccagg cgtcggggat gcaatcgcgg aagcgacggc gaaagtgata cggccgggag
      301 gtgcgttcct cgtttatcaa ttcagcccga aggttcgcga tttcatcgag ccctactttg
      361 ctccgatcaa gcgcggcttt gagtggatca atgtaccgcc ggcaaccttg ttctgggcgt
      421 ataagggcga gggcgagcgt tagccttcgg gtcggaagtt cagtctccgc gttacggtat
      481 aatccatcac gttcacgaga aagtgcgata ctgcccactt gatccggcgc cagaagttcg
      541 cccggcgctt gtgcagcgca ggagtgatcc gggtcgactg ggttagctcg ccctcgaaat
      601 aatcccgcat cgccgatgct agccccgcat ccttgatgcg cagcatgatc tccatgttga
      661 tgtacaagct acggtaatcg aaattcgatg agccgatgtg aacgatgtcg tcgacgatgg
      721 cgagtttggt gtgcagcttg gccggctgat attcgtacat ttgaacaccg cggcgcagca
      781 ggcggctgta gctgtgtcga gccgctgcaa tcgtcgcatt attgtcggac ttcgcagccg
      841 tgatgatccg tgcctctccg cgacgggcaa ggcgtccaat ccgtcgaagc atcgcaccgg
      901 ggggcgcgaa ataagcgaag atcatatcaa gccgctgccc gcggcgaatg tcgcggccaa
      961 tgcttcgcca ccagctgttg cggcgcgaca gagggccact gaatttccac tgcaatggac
     1021 cgcgccactg gctgtactct gcgagccgcc gccgcgcata gttaagtctc ggccgcgcat
     1081 gcgttgacca gcggaacagt gtatcgaaat attcgccggg aagccttgcc tgcggtccat
     1141 cgagccggag ccacaagtca cgccagtgac cggggacacc atcatcaagg tagctctgat
     1201 caatgttggc gccgccgatc agcaccgtct tatcatcgat gaggacgagc ttttgatgat
     1261 tgcgcatcag gtatcggcgc ccatagctcg gattgaacac gcagcggtcg cctccagcat
     1321 ccttgagtgc cgtgaaaaaa tcggctggcg cgcccgagcc aaacccgtcg accatgagct
     1381 tgacgtcaac cccgcgcttg gcagcggcaa ccagagcatc tcgcacccgt tcgccgaccg
     1441 gatcgggatt gaacatgtac atgagcatcc gcaccgagct ctgcgcgcta tcaatgagat
     1501 cgagcaggag ctgcaggcgc gcctcgcccg tctcaatgag ttccaacctg ttgcccgcga
     1561 tctgtgcgat tggcgcacga gcgtttacat gttgggcggg tccatcggcc atgcagcgca
     1621 gcttttgttg acttttgccc tgtccgcaag ctattggcgc ctccttcctg aaatcccata
     1681 ttccctcgcg ggataggctt tgcggagcga cgaatggcgc gcgttacggt tgaagattgt
     1741 gtcgacaagg tacccaacag gttcgatctt gtcctgcttg cggcgcagcg cgctcgccag
     1801 atttccggcg gagcggacct gacgatcgac cgcgatcgcg acaagaatcc cgtggtcgcg
     1861 ctgcgcgaga ttgccgacga gaccgtccgt ccccgtgatc tccaggaatc gatcgtcagc
     1921 aatctccaga aggtgcggat cgacgaggag gatgagacgg aggaactcgc gtccttgagc
     1981 gaggccgcag aagcgcttcg gctgacggct gccgcgccac cccggccgac gccgtcgggc
     2041 ggcgactacg aataaccaat cttccgctcg gcaacacgcc tgagagcgcg cacgcgtcct
     2101 agccaaaaag gaagtgcgtt gcgccgcgtt aaacaggcgc tggatagaat cgagccggat
     2161 gactagagcg gacggatggt tcccttttcg ttcgccggcg aaacattctt cccgagcagc
     2221 gatggcgcgc tcttctggcc atcgcagcaa gcgcttcttg tcgccgacct gcatcttgaa
     2281 aaggcaagct ggttcgcacg cctcgggcaa tttctcccgc cttatgattc gcacgcgaca
     2341 ctaagcgcac ttgcaggcga agtggaacgc actggcgcac gacgcctcta ctgccttggc
     2401 gacagttttc acgatcgctt cggttgtgaa cgccttccgc ccgatgctcg agaagttctc
     2461 gaggagctta cgtcgcggct cgattggacc tggatcgtcg gcaatcacga tccggggttc
     2521 gcggatcatt gcgggggccg catcgaaccg gaggtcgaac ttgccggcat aatccttcgc
     2581 cacgaagcct tgcgtgagga aagccgcccc gaaatctcgg gccactacca tcccaagctc
     2641 cggctccatc ttaagggacg gcgggtgtca cggcg
//
LOCUS       DASRBJ010000181         8112 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_481203,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000181 DASRBJ010000000
VERSION     DASRBJ010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8112
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481203"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1700
                     /locus_tag="VE968_05085"
     CDS             <1..1700
                     /locus_tag="VE968_05085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HZU51234.1"
                     /translation="LRRKHGSVDESWLGRRAPAVAHRIEWGRNKFNNGFERLINWYTT
                     RVSFVVDRKWLFLAIYAVVAVILYLLFQRLPTGFIPTEDQGAITVQYRLPPGATIGRT
                     RQIQLAVENYFLNGPEKKNVGQYFTVAGGGQGLSGQNTGQAFISLADYSKRKGSQNSA
                     DAIVQRATAAFRHFRDAQVFVLIPPSIRGLGQASGFTMELENTGGMPQQQFAQVRDKL
                     VAAANADPNLAQVRLSQLPDTATLQVNVDQQTLAALGISTGDVNSTLSAAWGGIYVND
                     FIDRGRVKRVYVEGDAPYRASPSDISQWAVRNNQGGMTPFDAFATTSWSVAPVSLYRF
                     NGIQAYEYQGNPAPGQSSGQAMNEITKVASRFPGVSVDWSGQSYQQRISSGQAPVLYV
                     LSLIVVFLCLAALYESWSIPVAVLLVVPLGLVGAVFAVTLRGFENDVYLQVGLITTMG
                     LTAKNAILMVEFAERAEKEGKRVIDAAIEAARIRLRPILMTSFAFIFGVLPLAVATGA
                     GANSRMEIGTAVIGGMLTATILAVFYIPLFFVLVRRSVRDGMTAIRRRLPGRKEARA"
     gene            1697..3148
                     /locus_tag="VE968_05090"
     CDS             1697..3148
                     /locus_tag="VE968_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HZU51235.1"
                     /translation="MKRAAALLALLASACSTMEPKYVRPEPAIPSSWPVGDPYLAQAE
                     VGLPVLTYQQIFQDERLRQLVATALANNRNLMTAAANIAAAREQYNIQRAQLLPTVNA
                     SAGATVSGNGHGDTSAQYNAGVNVPSFEIDLFGRIRSLTHAQLARFLATEAGARETRL
                     TLVADVATAWLNYASDSSLRLIAQQTAAAAQRSVELTRLRLEGGIAPRTDLEQAVQIL
                     STAQADLARQRTLVAQDLNALQLLVGTPVDPRLLSGSIDDAFGKIVPVPAGLDSYVLL
                     RRPDVLQAEYQLRAANAQIGAARAALFPRITLTGLLGFASSALARLFTAGAFGWSAGA
                     DASYTIFQGGAGHANVRLSEADRNAAIATYQGTIQTAFREVSDALARRGTLNDEIGAR
                     ERQVAATADTYMLTEDRYRAGIDPYLNVLSAQQSYYSAQQAMVQVKLTAAENLVTTYE
                     TIGGDALLAGTPVCTNLPGDTSSAPTSPFCKAA"
     gene            complement(3165..4136)
                     /locus_tag="VE968_05095"
     CDS             complement(3165..4136)
                     /locus_tag="VE968_05095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019051960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HZU51236.1"
                     /translation="MAQIALAHVTREYPHKLDHVLASREDARSPRELHPIFFGSFDWH
                     SCVHGWWTLLTLERLFPQFPEATEIRALADASFTRDKIAGELAYLDRPFSRGFERPYG
                     WAWLLELHLEAARHDKPWASELEPLARAFAQRLRNYLDMLTYPIRVGTHFNTSFALIL
                     SLDWAQEFDQPLAQQIRTRALHWFAADRDCQAWEPAGDEFLSSALTEALCMARTHSSE
                     FPAWFGHFLPSVSERQPASLFECAVVSDRSDGKIAHLDGLNLSRAWCWRSIAPLLPSA
                     ARAAAEQAADEHLSAALPHIAGDYMGEHWLASFALLALLADERPSAR"
     gene            complement(4166..5122)
                     /locus_tag="VE968_05100"
     CDS             complement(4166..5122)
                     /locus_tag="VE968_05100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HZU51237.1"
                     /translation="MINLHWVYALGGLVFASFAVGSARDGANRKRWGNALFWALLSLS
                     FWFGDLIGDLANGVLVLLIVAVAGTGLLGRGSGESTQINEREQLSDRYGNMLFVPALV
                     IPVTAFVGTLLFTYTPLKAFGIIDPKAVTLVLLGVGVILSLIICYGWFGPPPLTAVDE
                     GSRLANSIGWAIVLPQMLASLGVIFAAAGLGGMIGAMVGSIIPHGSIVMAVLLYALGM
                     VIFTIIMGNAFAAFPVMAAAVGVPILIHSDGGNAAVVGAVGMLAGFCGTLLTPMAANF
                     NIVPAALLELDSQYSVIRAQVATAIPLLVANILILYFAGFHR"
     gene            complement(5119..5787)
                     /locus_tag="VE968_05105"
     CDS             complement(5119..5787)
                     /locus_tag="VE968_05105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007163893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HZU51238.1"
                     /translation="MDYWPLLGIALVVAGFALRFNPLLVVAVAAIVTGLLGRMPFLKV
                     LATLGHGFNENRYVSLIYIILPVIGLLERYGLQQRARTIVANMRGATTGRLLIFYLGF
                     RQILSALGLTSVAGHAQTVRPLVAPMALAAAEKQHGELDEATANHVKSMSAATDNVGV
                     FFGEDIFLAVASILLIQSSLASFGINLTPFELSVWAIPSAVCAFIIHSTRLLHLDRKM
                     GRGR"
     gene            complement(5787..>8112)
                     /locus_tag="VE968_05110"
     CDS             complement(5787..>8112)
                     /locus_tag="VE968_05110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006833282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HZU51239.1"
                     /translation="ARRLQEVADQLGGARTCDEIAQGFLEIAVDNMAAAIRKISIARG
                     HDVTRYTLACFGGAGGQHACAVADALGIERILIHPLAGVLSAFGIGIADLKAIRETSW
                     LKPLHDDFSEALVALESRAREALREQGLSDERVQIHRRARLRTAGSDTTVEVRLLSAV
                     AMADEFAELHRARFGYWDESAEVIIDALIVEAVGTSDVPAGSVLDESTSEAFDGPHLI
                     FEPTSTIVVETGWHAERARDGTLILTRIVPLERAAAIGTHVDPVRLEIFNNLFMAIAE
                     EMGVALQSTATSINIKERLDFSCAIFDARGALIANAPHIPVHLGSMGESIAQIIDKRG
                     QGRDGRGIRRGDAYVLNDPYAGGTHLPDITVIVPIFYGDEPDPSAFVAARGHHADIGG
                     IAPGSMPPDSSTIEEEGILIDNFLLVEDERFREKEIRELLASGKWPARNPDRNISDLR
                     AQLAACVRGAEVLKNTARDYGADVVEAYMSHVLANAEESVRRLLRRLNDGEFDYEMDN
                     GAHVRVRIVIDKQNRAATFDFTGTSRQLADNFNAPFSIVRAASLYVVRTLIDDAIPMN
                     DGCLRPIRLVVPKGSMLNPEYPAAVVAGNVETSQVVTDTLFAATRKLAPSQGTMNNFT
                     FGNERYQYYETIAGGSGAGPDHDGTSAVQTHMTNSRLTDPEILETRLPVRLDQFAIRR
                     GSGGAGRYRGGDGVVRSVTFLEPMRANILANRRRVPPRGIDGGADGLAGRNWIERADG
                     TVEMLSATAYAQAQAGDRFVIETPGGGGFGRKEA"
BASE COUNT         1706 a         2472 c         2370 g         1564 t
ORIGIN      
        1 ttctacggcg caaacatggg agcgttgatg aaagctggct gggccgtcgc gcgcccgccg
       61 tcgctcaccg catcgagtgg ggtcggaaca aattcaacaa cggcttcgaa cgtctgatta
      121 actggtacac cacgcgtgta tccttcgttg tcgatcgcaa atggttgttc cttgccattt
      181 atgccgtcgt tgcggtcatt ctttatttgc tgttccagcg tttgccgact ggcttcattc
      241 caaccgaaga ccagggcgca atcaccgtcc aataccgctt gccgcctggc gccaccatcg
      301 gcaggacgcg tcaaatacaa ttggccgtcg aaaactattt cctcaatggt ccagagaaga
      361 aaaacgtcgg gcagtatttc accgttgccg gcggcggtca gggtcttagc ggtcagaaca
      421 ctggccaggc gttcatcagc cttgctgatt acagcaagcg caagggtagc cagaacagcg
      481 cggacgcgat cgtacagcgt gccactgcag catttcgcca cttccgcgat gcgcaggtct
      541 tcgttcttat accgccatca atccgtggac tgggccaagc aagtggcttc accatggaac
      601 tcgaaaacac cggtggaatg ccgcaacagc agttcgcgca ggtgcgcgac aagctcgttg
      661 ccgccgccaa tgccgatccg aacctcgcac aggtccgcct aagccagctt cccgacacgg
      721 caacgcttca agtcaatgtc gatcagcaga cgcttgccgc gcttggcatc agcaccggcg
      781 atgtcaactc gactctgtcg gccgcatggg gcggtattta cgtcaatgac ttcatcgatc
      841 gtggtcgcgt gaaacgcgtc tacgtcgagg gtgacgcacc ctatcgtgcg tcaccatcgg
      901 acatcagcca gtgggccgtt cgcaacaatc agggcggaat gacgccgttt gacgcgttcg
      961 caaccacgag ctggagcgtt gccccggtaa gtctgtaccg attcaacggc atccaggcct
     1021 atgaatatca aggcaacccc gcgcccgggc aaagctccgg acaggcgatg aacgaaatca
     1081 cgaaagtcgc atcgcgcttt ccgggcgtaa gtgtcgactg gtccggccaa tcataccagc
     1141 agcggatctc gtccggtcaa gcaccggtac tttatgtcct atcgctgatc gtcgtgttcc
     1201 tgtgccttgc ggcgctttac gagagctggt caatcccagt tgcggtgctg cttgtcgttc
     1261 cgctcggtct cgtcggcgcc gtctttgcgg tcacgcttcg cgggtttgag aatgacgtct
     1321 atcttcaggt cggcctgatc accacaatgg gcttaacggc gaagaacgca atcctgatgg
     1381 ttgaattcgc ggaacgtgcc gaaaaggagg gcaagcgcgt gatcgacgcg gcgatcgaag
     1441 cggctcgcat ccgacttcgc ccgatcctca tgaccagctt cgcattcatc ttcggtgtgc
     1501 ttccacttgc ggttgcgacg ggtgcaggag caaacagccg gatggaaatc ggtactgcgg
     1561 tcattggcgg catgttgact gcaaccattc tcgccgtgtt ctacataccc ctcttctttg
     1621 tcctcgttcg acgctcggtc cgtgacggca tgacggctat tcgccggcga cttccgggca
     1681 gaaaggaggc ccgcgcatga aacgggccgc agcgcttttg gcgcttctcg cgagcgcctg
     1741 ctcgacgatg gaacccaagt acgtccggcc cgaaccagcg atcccttcgt cgtggcccgt
     1801 cggggacccc tatctcgcgc aggccgaagt tgggctcccc gtacttacct accagcaaat
     1861 tttccaggac gagcgcctgc ggcaattggt cgccaccgcg ctcgcgaata atcgcaacct
     1921 gatgaccgcc gccgcgaaca ttgctgcggc gcgtgagcaa tataacatcc agcgcgcaca
     1981 actgctgcca accgtcaatg cctcggccgg cgcgaccgtc tccgggaatg gccacggcga
     2041 cacgtccgcg caatataatg cgggcgtcaa cgtgccgagc ttcgagatcg atctgttcgg
     2101 acggatccgc tcgctaacgc atgcacaact cgcgcgattc ctcgcgaccg aagccggcgc
     2161 tcgagagacg cgactgacgt tggttgccga cgtcgcgacc gcctggctca attatgcgtc
     2221 ggattcgagc cttcgactta ttgcccagca aacagcagcg gcggcgcaaa gaagtgtcga
     2281 actcacccgt ctgcggctcg aaggaggaat tgctcctagg acggacctcg aacaagcggt
     2341 gcagatcttg tccacggcgc aggcggacct cgcacgccag cgaacgcttg ttgctcagga
     2401 tctcaacgca cttcaattgc tggtcggaac gcccgtcgac ccgcgactgc tttcagggtc
     2461 gatcgacgat gctttcggga agatcgttcc cgttcctgcc gggctcgact cctatgttct
     2521 tttgcgccgc ccagacgttc ttcaggcaga atatcagttg cgcgcggcga acgcgcagat
     2581 cggcgcggcg cgtgccgctt tattccctcg gattacattg accgggctcc tcggctttgc
     2641 aagcagcgca ctcgcaagac tcttcaccgc cggcgcgttc ggctggagcg ccggggctga
     2701 cgcaagctac acgatttttc aggggggcgc tggacacgca aatgttcggc tcagcgaagc
     2761 cgaccgaaac gccgcgatcg ccacctacca aggaacgatc caaacggcgt tccgggaagt
     2821 ttcggatgca cttgcccgac gaggcaccct caatgatgag attggtgctc gagagcggca
     2881 ggtcgcggcc acggccgaca cgtacatgct gaccgaggac cgctaccgcg ccggtatcga
     2941 tccctatcta aacgttctta gtgcgcagca atcctactac agcgcgcagc aggcgatggt
     3001 gcaagtgaag ctcacggccg ctgagaacct ggtaacgacc tacgagacaa ttggcgggga
     3061 cgcgctcctt gccggaactc ccgtttgcac aaatctgccg ggtgacacct cgagcgcgcc
     3121 aacgtcgccc ttctgcaagg ctgcttagag cagtcccacg gcgtctatcg cgcgcttgga
     3181 cgctcgtcgg cgagaagtgc aagcagcgcg aagctcgcga gccaatgttc gcccatgtaa
     3241 tcgcccgcga tatggggcag cgctgccgaa agatgttcat cggcggcctg ttcagcggca
     3301 gcccgagcag cgctcggcag aagcggggca atgctgcgcc agcaccaggc acgactgaga
     3361 ttaagaccgt cgagatgcgc aatcttgccg tccgaacggt cgctgactac cgcacattcg
     3421 aagaggctcg cgggttggcg ttccgagacg ctcggaagga aatgcccgaa ccatgccggg
     3481 aactcgctgc tgtgtgttcg ggccatgcac aaggcttcgg tgagcgccga cgaaagaaac
     3541 tcgtcgcccg ccggctccca ggcttggcaa tcacggtcgg ccgcaaacca gtgaagggct
     3601 cgcgttcgaa tctgctgggc aagcggttgg tcaaattcct gcgcccagtc caacgacaaa
     3661 attaacgcga agctcgtgtt gaagtgcgtc ccaacgcgta tcgggtaggt cagcatgtcg
     3721 agatagttac gcaggcgctg cgcaaatgcg cgcgccaacg gctcgagctc gctcgcccaa
     3781 ggcttgtcat ggcgagcagc ttcgaggtga agctcgagca gccacgccca gccataaggc
     3841 cgttcgaagc cgcggctaaa gggccgatcg agataggcga gctcaccagc aatcttgtcg
     3901 cgcgtgaagc ttgcatccgc gagtgcgcgg atctccgttg cttcaggaaa ttgcgggaac
     3961 agtctctcaa gagtgagaag cgtccaccat ccatgaacgc agctatgcca gtcgaagctg
     4021 ccaaagaaga tcgggtgcaa ttcgcgtggc gagcgagcgt cctccctgct cgcaagaaca
     4081 tgatcaagct tgtgtggata ttccctcgtg acatgcgcca aagcaatttg cgccatgcgt
     4141 gagccgaggc cgctttcgag gatgttcacc gatgaaatcc tgcgaaatag aggatcagga
     4201 tattggcaac cagcagcggg atcgcggttg cgacctgtgc cctgatcact gaatattggc
     4261 tatcgagctc gagtagcgct gcggggacaa tgttgaagtt agctgccatt ggggtgagga
     4321 gcgtgccaca aaaacccgcg agcattccaa cggctccaac caccgcggca ttgccgccgt
     4381 ccgaatggat gagaatgggt actccaacag ctgccgccat cactggaaat gcggcgaagg
     4441 catttcccat aatgatcgtg aagatgacca tcccgagcgc gtaaagcagt actgccatca
     4501 cgatgcttcc gtgcgggatg atcgaaccga ccattgcacc aatcataccg ccaagccccg
     4561 cggcggcgaa gatgacgccg agcgaggcga gcatctgcgg aagaacaatc gcccagccaa
     4621 tcgaatttgc aaggcggctg ccttcgtcga ccgcggtgag tggcggaggc ccaaaccagc
     4681 catagcagat gattaacgag aggatcacgc cgaccccaag cagtaccagc gtcactgcct
     4741 tgggatcgat gatgccgaag gccttgagcg gcgtatacgt gaataggagt gtcccgacga
     4801 atgccgtgac tggaatgacg agagccggca cgaagagcat gttgccatag cgatctgaaa
     4861 gctgttcacg ctcattgatc tgcgtgctct cgcccgagcc ccgaccaagc agcccggtgc
     4921 cggcaacagc gacgatgaga agcacgagga cgccattggc gagatcgccg atcaaatcgc
     4981 cgaaccagaa gctcagtgaa aggagagccc agaacaaggc attgccccac cgcttccgat
     5041 tggctccgtc acgcgcgctg ccaacagcga agctcgcgaa gacgagaccg ccaagggcgt
     5101 atacccaatg gagattgatc atcggccgcg tcccattttc cggtcaaggt gtaggagtcg
     5161 cgtactgtgg ataatgaagg cgcatacagc gcttggaatt gcccagacgg agagttcgaa
     5221 gggtgtgaga ttgataccaa agcttgcgag cgaactttgg atcaagagga ttgatgcgac
     5281 cgcaaggaag atatcttcgc cgaagaatac gccgacattg tcggttgcag cagacatcga
     5341 cttcacgtga ttggcggtcg cctcatcgag ttcgccgtgc tgcttctcgg ccgccgcaag
     5401 cgccatcggc gcaacaagcg gtcgaacggt ttgcgcatga ccagcaaccg aggtcagtcc
     5461 caaggcggaa aggatctggc gaaagccgag gtagaagatg agcaggcgac ccgtcgttgc
     5521 gccgcgcatg tttgcaacga tcgtgcgtgc tcgttgctga agcccgtagc gttcgagcaa
     5581 tccgatgacc ggcaggatga tgtagataag cgagacatat cggttctcgt tgaaaccatg
     5641 ccccaaggtc gcgagcacct tgaggaacgg cattcgcccc aggaggccgg ttacgattgc
     5701 tgcaacagcg acgaccagca gcggattaaa gcggagcgcg aacccggcaa ccaccagcgc
     5761 gatcccaagc aacggccaat aatcgatcaa gcctctttcc tcccaaagcc gccgcctcca
     5821 ggcgtctcga tcacgaaccg atcgccggcc tgcgcctgcg cataagcggt tgcgctaagc
     5881 atttcgacgg taccatccgc gcgctcgatc cagttgcgcc ccgccaagcc gtcggctccg
     5941 ccgtcaattc cccgtggcgg cacgcggcgc ctgttagcga gaatattcgc gcgcattggc
     6001 tcgaggaaag taaccgaccg aaccacgccg tcaccgcccc ggtaacgccc tgcgccgccc
     6061 gagccgcgcc ggattgcaaa ctgatcgagc cgcaccggca gccgcgtttc gagaatttcc
     6121 gggtcggtca atcgactgtt cgtcatgtgg gtttgaacgg cgcttgtccc gtcatgatct
     6181 ggaccggcgc ccgaaccacc ggcaattgtc tcgtaatatt gatagcgctc gttaccgaag
     6241 gtgaaattgt tcatcgtgcc ctggctcggc gcgagttttc gtgtcgctgc aaacaacgtg
     6301 tcggtgacga cctggcttgt ctcgacattg ccggcaacga ccgccgccgg atattcggga
     6361 ttgagcatag atcccttggg cacgacgagc cggattggtc gaagacagcc gtcattcatc
     6421 ggaattgcgt cgtcgatcaa cgttcgaacg acgtaaagag aagccgcccg aacaattgag
     6481 aaaggggcgt tgaaattgtc ggcgagctgc cgacttgtac cagtgaagtc gaacgtcgcg
     6541 gcgcgatttt gcttatcgat gacaatgcgt acgcggacgt gagcgccatt gtccatttcg
     6601 tagtcgaatt caccatcatt cagccgtcgc agcagacggc gaaccgattc ctcggcattg
     6661 gcaaggacgt ggctcatata cgcctcgaca acgtcggccc catagtcgcg cgcggtgttc
     6721 ttcaacacct cggcgccccg aacacatgcc gcaagctggg ctctcaggtc cgaaatgttc
     6781 cgatcgggat ttcgcgccgg ccatttcccc gaagcgagga gttcgcgtat ttccttctca
     6841 cgaaatcgct cgtcctcgac cagcagaaaa ttatcgataa ggatgccctc ttcctcgatc
     6901 gtgctgctgt cgggcggcat cgaacccgga gcgattccgc cgatgtccgc atggtgccct
     6961 cgcgcggcga cgaaagccga cgggtcgggt tcatcgccat aaaagatggg gacaatgacc
     7021 gtgatgtcgg gaagatgcgt gccgccggca tagggatcgt tcagcacata ggcgtcaccg
     7081 cgccggatac ctcggccgtc ccttccctgc ccgcgtttgt cgatgatctg tgcaatgctc
     7141 tcgcccattg aaccaaggtg caccggaatg tgcggcgcat tggcgatgag agcgccgcgg
     7201 gcatcgaaga ttgcgcagga aaaatcgagc cgctctttga tgttgatgct ggttgcggtc
     7261 gattggagag caactcccat ctcctcggcg atcgccatga agagattgtt gaatatttcg
     7321 agccgcaccg gatcgacgtg cgtgccgatt gctgcggcgc gttcgagtgg aacgatgcgg
     7381 gtgagaatga gcgttccgtc tctcgcccgt tcggcatgcc agccagtttc aacaacaatc
     7441 gtcgaggttg gttcaaagat gaggtgtgga ccatcgaatg cttcggaagt gctctcgtca
     7501 agaaccgagc cggcaggtac gtccgacgtt ccaaccgctt ccacgatgag agcatcgatg
     7561 atcacctcgg cgctttcgtc ccaatagcca aagcgggctc ggtgaagctc cgcgaactcg
     7621 tccgccatcg ccacggcgct caagagcctg acttcgaccg ttgtgtcgct tcccgccgtt
     7681 ctaaggcgcg ctcgccgatg gatttgaacg cgctcatcgc ttagcccctg ttctctcaat
     7741 gcctcgcgcg ctcggctttc aagcgccact agcgcttcgc tgaaatcgtc atggagtggc
     7801 ttcaaccagc tcgtctcccg gatggccttc aaatcagcga tgccaatgcc aaaagccgaa
     7861 agcacccccg cgagtggatg gatgaggatc cgctcgatcc ccagggcatc cgccaccgcg
     7921 caggcatgct gtcccccagc gccgccgaag catgcgagcg tatagcgcgt cacgtcatgc
     7981 cctcgtgcga tggagatctt ccttattgcc gcagccatgt tgtcgacggc tatctcgaga
     8041 aagccttgcg caatttcatc gcaagttctg gcgcccccaa gctgatcggc aacctcctgc
     8101 aggcgacgcg ct
//
LOCUS       DASRBJ010000182         3514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_481517,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000182 DASRBJ010000000
VERSION     DASRBJ010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3514
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481517"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            95..1615
                     /locus_tag="VE968_05115"
     CDS             95..1615
                     /locus_tag="VE968_05115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HZU51240.1"
                     /translation="MNEFSFTPRLLAVGISLLLCGCAVGPAYHPPGAANLGVPPAYAP
                     PVTRVSSSSSDREPGPAPADLAIWWRQFDDPLLSDLIARATAGNLQIAQSLARLQEAR
                     EARIQARSDLLPSLNGSAGVGQNFTHGGSSSIVVGGGNGSPGTVVTTGGSSSTTQLSV
                     GLDASWQADLFGGLRRSVEAARADEAAAGFDLEGVRTSIAGEVATNYINARLAQARLL
                     IARNTLSTQDDNLQIAEWRVEAGLASALDVEQARSQRAQTAATIPTLQSSYLQAVARL
                     GTLTGQAPGALRAAMETVRPIPKGPSDIAIGIPADTLRRRPDVRSAERQLAAATARIG
                     VAKAALFPALSISGNINSDAASIGKLGSLITGGLFAGLTQTIFDAGKRASQVRSARAA
                     TDLAFANYKQVVLSGLEDVENAVQALEAAKARQRELEVAVDASNNAAIYARSQYRSGL
                     IDFLSLLQSEQALLSARDQLATAEADQALALVQLYLALGGGWQPDAPQLVENARND"
     gene            1608..2888
                     /locus_tag="VE968_05120"
     CDS             1608..2888
                     /locus_tag="VE968_05120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010185160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HZU51241.1"
                     /translation="MTEVDIDAFLGQPRQTRWRRWRKWVFIGVPVVIALLLLARCLRP
                     APPVAYATAPIERHDLDVTITATGNLAPTVQVNVGSEESGLVDKVYVQNNDHVVKGQP
                     LAQLDLSRLRDALVQSQATLQAALATVAQDRATVAQTKATLSRQEEVYRVSGGKVPSK
                     TELDTARADYARAIANVAQAQAQVAQARANVSTNRTNLAKGTIYAPVTGVVLSRQVEP
                     GQTVAASFNVATLFTIAQDLSNMKLQVKVDEADVGELRPGARATFTVDAYPSRTFPAT
                     VTRVDLGANATPIVNSAGTTPTTTTNVVAYTAELAVANADGSLKPGMTATATIVTDSL
                     KNVLLVPNAALRFTPPSDSQKKNIFGPPPDQPKNAAVSRGAHQQLWTVGVDGKPKALP
                     VTVGHTNGSFTEVSGAGLHPGLKVITGQLAATGK"
     gene            2890..>3514
                     /locus_tag="VE968_05125"
     CDS             2890..>3514
                     /locus_tag="VE968_05125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HZU51242.1"
                     /translation="MSEPLIALRAITKRFGEGVAAFDALKGINLDIAPGDFVAIMGAS
                     GSGKSTTMNILGCLDVPTSGSYLFRGVPVEGLDRDQRSLLRRRYLGFVFQGFNLLART
                     TALENVELPLLYRGESRRARARQAMTALARVGLAEWSHHKPNELSGGQQQRVAIARAL
                     VTEPDVLLADEPTGNLDSERSVEIMELLRKLNAEAGLTVLLVTHEPDM"
BASE COUNT          648 a         1111 c         1081 g          674 t
ORIGIN      
        1 ggaagccttc tgttctcctc gtttctcggg atcctctttg gctacgtgcc ggcgcagcgc
       61 gccgcgagcc tcaatccgat cgatgctcta cgccatgaat gagtttagct ttacgccgcg
      121 cctcttggcg gttgggatct cgctgcttct ttgcggctgc gcggttggtc ccgcttatca
      181 tccgccgggc gctgcaaacc tcggcgtccc gcccgcctat gcgccccctg tgacgcgggt
      241 ctcgtcatca agcagtgatc gcgagccggg accggcgcca gccgaccttg caatctggtg
      301 gcggcagttc gacgatccgt tgctgagcga tctcattgcg cgtgcaaccg ccggtaatct
      361 ccagatcgcg cagtcacttg cccggcttca agaagcgcgc gaggcgcgga tccaagcacg
      421 gagtgacttg cttccttcgt tgaacggctc ggccggcgtt ggacagaatt tcacgcacgg
      481 aggctcatct tcgatcgtgg tcggcggagg aaacggctcg cctggaacgg tcgtcacgac
      541 cggcggatcg tcttcaacga cgcaattgtc ggttggtctt gatgcctcct ggcaggcgga
      601 tcttttcggc gggctccggc gaagcgtgga agccgcgcgt gctgacgaag ccgccgcagg
      661 gttcgatctt gaaggcgttc gcacgtcaat cgccggtgag gttgcgacca attatatcaa
      721 tgctcggctc gcccaggctc gattgctaat cgcgcgcaat accttgagca cgcaggatga
      781 taatctgcaa atcgccgagt ggcgtgtcga ggcaggcctt gcgtcggcgc tcgacgttga
      841 gcaggcgcga tcgcagcgcg cacaaaccgc tgcaaccatt ccaacactcc aatcttctta
      901 cctgcaagcc gtcgctcgcc tcggaacgct taccggccag gcacccggtg ctctccgcgc
      961 cgctatggaa accgttcgac cgatccccaa aggcccttcc gacattgcaa tcgggatccc
     1021 ggctgacacg ttacggcggc gcccggacgt ccgcagcgcc gaacggcagc ttgccgctgc
     1081 gacggcccgc atcggcgtcg cgaaagcggc gctgtttcca gcattgtcga tcagcggcaa
     1141 tatcaacagt gacgcggcga gcatcggcaa gcttggcagt ctcatcacgg gcggactgtt
     1201 tgctggactg acgcagacaa tcttcgatgc aggaaagcgt gcgtcacaag tgcgctccgc
     1261 gcgcgccgcg acggatctcg cgttcgccaa ttacaagcag gtcgttctgt ccgggctcga
     1321 ggatgtcgaa aacgccgtgc aggcgctgga ggcggcaaag gcgcggcaga gagagctcga
     1381 agttgctgtc gatgcttcga acaacgccgc catctatgcg cgaagccagt atcgttcggg
     1441 gctcatcgac ttcctcagcc tgctccagag tgagcaggca ctcctctcgg cgcgcgacca
     1501 gctcgcgacg gcggaggccg atcaggcgct tgcccttgtc cagctttacc ttgcccttgg
     1561 tggcggttgg cagcctgacg cgccgcaact cgtggagaac gcccgcaatg actgaagtcg
     1621 atatcgatgc cttcctcggg cagccgcggc agaccaggtg gcggcgatgg cgcaagtggg
     1681 tgttcattgg tgtgcccgtt gtcattgcgc tgctgctcct tgcccgctgt cttcgtccag
     1741 cgcccccagt cgcttatgca acggcaccaa tcgagcggca cgacctcgac gtaaccatca
     1801 ccgccaccgg caatcttgcg ccgactgttc aggtgaatgt tggttcagaa gagtcggggc
     1861 tggtcgacaa ggtctatgtc cagaacaacg accatgtcgt gaagggacag cctcttgccc
     1921 agctcgactt gtcgcgactt cgtgacgcgc tggttcagag ccaagcgacg ctgcaggcgg
     1981 cacttgcgac cgttgcgcag gaccgtgcga ccgttgccca gaccaaggcg acgttgtcgc
     2041 gccaggaaga agtgtatcga gtttccggcg gcaaggttcc ttcaaagacg gaactcgaca
     2101 ccgctagggc agactatgct cgggcaatcg ccaatgttgc gcaggcccag gcgcaggtcg
     2161 cccaagctcg agcgaacgtg tcgaccaatc ggaccaacct tgcgaagggc accatctacg
     2221 caccagtgac gggggttgtc ctctcgcgcc aggttgagcc cgggcagacc gttgcagcct
     2281 cgttcaatgt cgcgacgctg ttcaccatcg cgcaggacct ttcgaacatg aagctccagg
     2341 tcaaggtcga cgaggccgac gtcggcgaac tgcggccggg cgcgcgtgcc accttcaccg
     2401 tcgatgctta tccgagccgg acgttccccg cgacggtgac gcgggtcgat cttggtgcga
     2461 atgctacacc aatcgtcaac agcgccggga cgacaccgac cacgacgacg aatgtcgttg
     2521 cctatactgc cgagcttgcc gtcgccaatg ccgacggatc gcttaagcct ggcatgacgg
     2581 cgactgcgac gatcgtcacg gattcgctca agaacgttct gcttgtgccc aatgcggcat
     2641 tgcgcttcac gcccccgagc gattcacaaa agaagaacat cttcggtccg ccgccggacc
     2701 agccgaagaa tgccgcagtg tcgcgcggtg cgcatcagca gctctggaca gtgggagtcg
     2761 acggcaaacc caaggcacta ccggtaaccg taggtcacac caacggcagc ttcaccgaag
     2821 tgagcggagc tggcctgcac cccggtctca aggtcattac cggccagctt gccgcaacgg
     2881 gtaaatagct tgtcggagcc gctcattgcc ctgcgcgcca taaccaagcg cttcggcgaa
     2941 ggcgttgcag cctttgacgc tctaaagggc atcaatctcg atatcgcgcc tggcgacttc
     3001 gtcgcgatca tgggcgcgtc gggatcgggc aagtcgacaa ccatgaacat cctggggtgc
     3061 ctcgatgtac cgacgtcggg ctcgtatctt ttccgcgggg tgccggttga agggctcgac
     3121 cgtgaccagc gctcgctcct gcgtcggcgg tacctcgggt tcgtgttcca gggcttcaac
     3181 ctgcttgcaa ggacgaccgc gctcgagaat gtcgaacttc ccttgcttta tcgtggtgaa
     3241 agccggcgtg cgcgggcgcg ccaggcaatg acggcgcttg caagggtcgg gttggcggaa
     3301 tggtcacatc ataaacccaa tgagctgtcc ggcggtcagc agcagagagt cgcgatcgcg
     3361 cgagcgctcg ttaccgagcc ggatgtgctg ctcgccgacg agccgaccgg caaccttgat
     3421 tcggaacgtt ctgtggaaat catggaattg ttgcgaaagc taaacgccga ggctggcctc
     3481 acggtccttc tcgtcactca cgaacccgat atgg
//
LOCUS       DASRBJ010000183         9071 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_226393,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000183 DASRBJ010000000
VERSION     DASRBJ010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 9071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9071
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226393"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1163)
                     /locus_tag="VE968_05130"
     CDS             complement(<1..1163)
                     /locus_tag="VE968_05130"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZU51243.1"
                     /translation="MNFERAIIAARASVDDEDALSTLARIALEEAREEDALPLLRRAA
                     EGGSSALLWQWTGLLERAIDEHQRALYSFARASALAPADRSIAHGRARVALEAGIPAE
                     QLFEDALRVSPGDPDVVLGYSAALFAAGKAEAAERTLAYILERSPLWIEGHTQLAQLR
                     STIGKKDRATASIEQSLQLYPRAEELWAALFRLLLQMQNFRALDEAIARARSHAQPAQ
                     TLARYEAIAAIEQDQTDRADRLLAAMSSQLRQSIALWTIRHLLRAGRLQEASSAIAAA
                     LQTELAADVWPYASIAWRLTGDHRLAWLEGNLDQLVSVIDLSSELPDLNELEMVLRKL
                     HAGKGEYLDQSVRGGSQTDGPLFPNIDPRIRALRGAIVSAVRHHLEQLPERQRG"
     gene            complement(1182..2339)
                     /locus_tag="VE968_05135"
     CDS             complement(1182..2339)
                     /locus_tag="VE968_05135"
                     /inference="COORDINATES: protein motif:HMM:NF016974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018193 - peptidyl-amino acid modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl/asparaginyl beta-hydroxylase
                     domain-containing protein"
                     /protein_id="HZU51244.1"
                     /translation="MTIGSAALIDEADKATASGNLNRAEQLLRQACEGATNDPSIFLK
                     LAALQRANGRLQQALNSVHRALAISPLDFTALLLRASLLDRMSDPSAPEAWSHAIAQK
                     PHGELPPHLEGVVATAMARVDQWTAKRDARIAVAMEKYERSANPDEHWRLQRFRSNVL
                     RRTRPYHSEPTHFHFPALEEREFYPRHLFPWMDKLEGATEIITSELKALMASDAAELV
                     PYVQYADHLPLDQWRELNKNQDWSAIHLLQNGEVVEANARFCPRTMDVLEQCNQPKIR
                     GASPNAMFSLLAPKTHIPAHVGVNNTRLVCHLPLVVPEGCWFRVGAERRSWETGKAFV
                     FDDTIEHEADNPTEQLRVVFIFDTWQPQLSSLERDAVRCLIEADGLPGDYS"
     gene            complement(2336..4342)
                     /locus_tag="VE968_05140"
     CDS             complement(2336..4342)
                     /locus_tag="VE968_05140"
                     /inference="COORDINATES: protein motif:HMM:NF012888.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HZU51245.1"
                     /translation="MLGSTALDPRTASAIREALASASNGRIADARRIGEAALAAGGDE
                     APLNAMLGTFCLRSADFEGAARHLRIAHAMRPDDVTIAINLGTALAQLELYQEALAVA
                     SEELAAADQSLRLQRLRAFAAQSLGQHASAIAAYERIVAVSPTDWESWNNLGNSRRCA
                     GDADGAVEALRRAAALAPDAPPVRLNFANALVEVGKEAEAEAEFRSMAKDFPAEWRAL
                     RELHVLLRSQAREEEALAAIEEASRRNPEDLELLLGVASQRLLLLDNPGAEAAYRKVV
                     ERDSRNPLGNLGLAVVYDLSNRTDDLARLVEDVQSRNVDEGVRNFIRAFDHRRAKRFE
                     EGLVAMTGVSNDLEPARQADLLGQLNDRAGKYDEAWRAFSALNQIQREDASRPVERGA
                     RYREAMRKNFEATTPEWAERWVDHEIGDKSANPIFLVGFPRSGTTLLDTFLMGHPATA
                     VLEEEPILNSAAALIGDYDGIPETPPQIIRAARDIYWVEAAKRLETNKLVVDKNPLFV
                     GAMPLIRRIFPQAKIILAVRHPCDVVLSCFTTNFRLNDAMSNFLGLDTTAELYDLAFS
                     YFDRMQSLLPMNTHVVKYEQFVADREGELKNLFDFLELPWSDRVLDHEKTAMNRGLIK
                     TASYAQVVEPVYARSMGRWKNYEKHLAPILPVLKPWIEKFGYDA"
     gene            complement(4452..7835)
                     /locus_tag="VE968_05145"
     CDS             complement(4452..7835)
                     /locus_tag="VE968_05145"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU51246.1"
                     /translation="MKLDFRQRLLATSILVGTSMIASPAFAADNAQPTPPDSTSVPAA
                     AAPPTGPVESQPLPSTNAQGGEVTGRQEIVITGSRIPQPNLQSTAPVSVVSSQDIKLS
                     GTSRIEDVLAQLPSAAVSQSSGFSNAASGTAEVDLRYLGAKRTLVLIDGRRMTPGDPN
                     STTQAADINLIPASLIKRVDVLTGGASSVYGADAVAGVVNFIMDTDFDGLRLDGTWSI
                     YQHDNRDADLIGGQTMRGILNAKNFPFPTGSATDGRSVDGTAAFGAGFDDGRGHVVAY
                     FGYRKINPILGANRDYSACTITENSAHNKNSCGGSATADPGNLIVFPNGGTSSTYGAL
                     GPGTINVGGAPNVFNYGPLNYFQRPDERYTAGLFAHYDVNPAIKPYLEFMFMDDHTVA
                     QIAPSGDFGNTLTINCDNPLMSAQQRTAICNPSNMITGFVGSFPAAQAASFNPTPNAP
                     PVTFYDARGNTYNEAFGQLLRRNVEGGDRQADLTHTTYRGVIGTRGDLSDVFSYDAYY
                     QYGRTDYEQVYRNEFSATRLTNALNVVNVNSAGQVVPVGTPGSVIECRSVLAGTDNNC
                     VPYDIFGAAGPSQAAINYLNVYGVITGRTSEQIADVNVTGDLGKMGWQFPWANDGVGV
                     NVGYEYRKESLQLNPDQEFQTGDLTGQGSPTLPISGSFHVNELFGEVQIPIVQHSFFD
                     ELSVNAGYRRSWYKTSTGGGYNTDSYKISADFAPIHDIRFRGAYNRAVRAPNIAELFT
                     TQHVALDGGTDPCAGHAITATEYGCLAQGMRVGQVTPLNPASQYNGFVGGNPSLLPET
                     ATTKTVGVVLQPRFFNRFAVTVDYWNITIKGAIQGFGADAILADCVDPTKTTATTTAA
                     SCALVHRDPSGSLWLTSNGYVTDIPHNVGSDKTDGIDVSAAYSHGLGRWGSFSTSFQG
                     TWVHKYEVDNGLTAPYNCVGLFGSTCGSLIPKWRHKLRVTWDTPIGLGVSGQWRHLSS
                     GTYEGYSSNPTLSGTHFDLGGHTPSFDYFDLGLTYSLFHDAVALRAGVNNVFDRLPPL
                     VASGGICPAGPCNNNVWVTTYDALGRFIYAGATVTFGHHPAPPPPPPPAPVAPPPPPP
                     PAAPATQTCPDGSVILATATCPAPPPPPPPPAPAPERGE"
     gene            complement(8060..>9071)
                     /locus_tag="VE968_05150"
     CDS             complement(8060..>9071)
                     /locus_tag="VE968_05150"
                     /inference="COORDINATES: protein motif:HMM:NF016974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018193 - peptidyl-amino acid modification
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aspartyl/asparaginyl beta-hydroxylase
                     domain-containing protein"
                     /protein_id="HZU51247.1"
                     /translation="LLSADAAERTALEAALETDQRHLMANIRLAELHERRGEIADATK
                     RWTAVVALSSAYAGPPADLRKIFEHAHSFVAERTSRLAENLGQELASMLSSAAPRDQR
                     RLTAAIDHMLGRRRIYTNQCFGVHYPFLPADEFFDREHFPWLGSIEAQTDIIRKELLE
                     LLSSNDAGLSPYVTMPAGTPPNIWSELNNNYSWSALHLWKEGVRIDEACRRAPETARI
                     VESLPLARVPGRAPTIFFSILQAGKHIPPHTGVTNTRTIVHLPLIVPPGCSFRVGGET
                     REWREGEAFAFDDTIEHEAWNRSDKDRAVLIFDCWNPHLSDDERSMIVRLFEVTDADK
                     PL"
BASE COUNT         1777 a         2653 c         2779 g         1862 t
ORIGIN      
        1 ccccgctgcc gctctggaag ttgctcgaga tggtgtctca ctgctgacac gatcgctcca
       61 cgaagtgctc ttatccgtgg gtcgatgttc gggaagagtg gtccgtcggt ttgtgagcca
      121 ccacgtacag actggtcgag atactcgccc ttaccggcgt ggagcttcct cagcaccatt
      181 tcgagctcat taaggtcggg aagctcgctc gacaggtcga ttaccgaaac cagctggtcg
      241 aggtttcctt cgagccacgc caagcgatga tcgccggtta gccgccaagc gattgaagcg
      301 tagggccaca catcagcggc aagctccgtt tgaagtgcgg cggcaatggc tgaggatgcc
      361 tcttgaaggc gccctgctcg gagcagatgg cgaattgtcc aaagcgcgat agactgccgc
      421 aattgagacg acatcgcggc caggagacgg tccgcgcgat ccgtttgatc ctgttcaatc
      481 gctgctatcg cttcgtagcg cgcgagagtc tgtgccggct gcgcgtggct ccttgctcgg
      541 gcaatggcct cgtccaatgc tcgaaagttc tgcatctgca gcagaaggcg aaagagtgct
      601 gcccataatt cttcggcacg cgggtaaagt tggagcgact gctcgatcga agcagtggcg
      661 cgatccttct tccctatcgt tgatcgcagc tgcgcaagct gtgtgtgccc ttcgatccag
      721 aggggcgagc gctcgagtat gtaagccagc gttcgttccg ccgcttctgc tttgccggct
      781 gcgaaaagcg ctgcgctgta accgagaacc acatccggat cgcctggtga cactctcaag
      841 gcgtcttcga aaagctgttc ggcgggaatg ccggcttcaa gcgctacccg cgcacgtccg
      901 tgcgcaatgc tccggtccgc aggcgcaagt gcagaagcgc gggcaaaact gtacaaggca
      961 cgttgatgtt catcgattgc gcgctcaagc aatccagtcc actgccacaa aagcgcgctc
     1021 gagccccctt cggcagcacg ccggagaagc ggtagcgcat cctcttcgcg agcttcttcc
     1081 agcgcaattc gcgcgagggt cgaaagcgcg tcttcatcat cgaccgatgc tcgggccgcg
     1141 ataatcgctc gttcgaagtt cataccttgt tgcttgcgtt cttaagaata atcgccgggg
     1201 agcccgtccg cttcaatcag gcacctgacc gcgtcgcgct cgagcgaaga aagctgcggt
     1261 tgccaggtgt cgaagatgaa cacgacccga agctgctcgg tcggattatc cgcttcatgc
     1321 tcgatcgtgt cgtcgaagac gaatgctttg ccggtttccc acgagcgccg ttcggcgccg
     1381 acgcgaaacc agcagccttc tggaacgaca aggggcagat ggcagaccag gcgcgtgttg
     1441 ttcactccga cgtgtgccgg aatatgcgtt tttggcgcca ggagcgagaa cattgcattg
     1501 ggcgatgcgc cacggatctt cggctgattg cactgctcta atacgtccat ggtccggggg
     1561 caaaaacgcg cattggcttc gacaacctcg ccgttctgaa gcaagtgaat tgcactccag
     1621 tcctggttct tgttgagttc gcgccactgg tccagcggaa ggtggtcagc atattggacg
     1681 taaggcacta gctcagccgc gtccgacgcc atcagcgctt ttagttccga cgtgatgatc
     1741 tcggtcgcgc cttcgagctt gtccatccac ggaaacaggt gcctcgggta gaattcacgc
     1801 tcctcaaggg ctgggaaatg aaagtgcgtc ggctcactgt gataagggcg cgtacgcctt
     1861 agaacattgc ttcggaaccg ctgcaggcgc caatgctcgt ccggattggc tgatcgctca
     1921 tatttctcca tggcaaccgc tattcgcgcg tcgcgtttgg cagtccattg gtcgacccgg
     1981 gccattgcgg tcgcgacgac gccctccagg tgcggcggca attcgccgtg gggcttttgg
     2041 gcaatggcat ggctccatgc ctctggcgcg ctcggatcgc tcattcggtc aagaaggctt
     2101 gcgcgaagca gaagtgccgt gaagtccaac gggctgattg caagcgctcg atgaacactg
     2161 ttaagcgcct gctgcagccg gccgttggcc cgctgcagcg ctgctagttt caagaagatt
     2221 gatggatcgt tcgttgcgcc ttcgcacgct tggcgcagca actgttcggc tcgattgaga
     2281 ttgccggatg ccgtcgcctt gtccgcctcg tcgataaggg ctgctgaacc gatcgtcacg
     2341 cgtcgtaacc gaacttttcg atccatggct taagcacagg caaaatcggc gcgagatgct
     2401 tctcgtaatt cttccaacgt cccatcgaac gtgcgtaaac gggctcgaca acctgagcat
     2461 agctggcggt tttgatcagc ccgcggttca tcgcggtttt ttcatggtca agcacgcggt
     2521 cgctccatgg aagctccagg aagtcaaaga ggttcttgag ctcgccttct cgatcggcaa
     2581 cgaactgttc gtacttgacc acgtgggtat tcatcggaag caggctctgc atccggtcga
     2641 aatagctgaa tgcgaggtca taaagctcgg cggtcgtatc gaggccaaga aagttcgaca
     2701 tggcatcatt gagcctgaaa tttgtcgtga agcagcttag gacaacatcg cagggatggc
     2761 gcaccgcaag aatgatcttc gcttgaggga atatgcgtcg gattagtggc atcgcgccca
     2821 cgaaaagcgg attcttgtca acaacaagct tgtttgtctc caagcgcttc gctgcctcaa
     2881 cccaataaat gtctcttgcc gctcttatga tttgcggcgg cgtctcggga atgccgtcgt
     2941 agtcgccgat taacgctgct gcggagttga ggatcggctc ttcttcaaga acggcagtgg
     3001 cgggatgacc catcagaaaa gtgtcgagta gtgttgttcc agaccgcggg aaaccaacca
     3061 ggaaaattgg atttgcgctc ttgtcgccaa tttcgtggtc aacccaacgc tctgcccatt
     3121 caggtgttgt tgcctcgaaa ttcttgcgca ttgcctcgcg gtagcgcgca ccgcgttcaa
     3181 ccggtcttga cgcgtcctcg cgctgaattt ggttcaacgc ggaaaaagcg cgccaagctt
     3241 catcatattt gccggcgcga tcgttcagct gccctaacag atctgcctgc cgcgctggct
     3301 caaggtcgtt ggagaccccg gtcatggcga caagcccttc ctcgaacctc ttggctcgac
     3361 gatgatcgaa cgcgcgaatg aagtttcgaa cgccctcgtc gacattgcgc gattgaacgt
     3421 cctcgaccaa gcgagcgagg tcgtccgtcc tgttcgagag atcatagacg accgcaagcc
     3481 caagattgcc aaggggattg cgtgaatcgc gttcgacgac tttgcgatac gcggcctccg
     3541 ctccgggatt atcgagcaaa agcagtcgct ggctcgcaac gccaaggagc agttcgaggt
     3601 cctcggggtt gcgcctactc gcttcctcga tggcggcgag cgcttcctct tcccgggctt
     3661 gcgatcggag cagaacgtgc agctcccgaa gtgcgcgcca ttcggccgga aagtccttcg
     3721 ccatcgacct gaattctgcc tcggcttccg cttccttccc gacttcgaca agcgcatttg
     3781 caaaattcaa gcggaccggc ggcgcatccg gcgcgagcgc ggcggcgcgc cgaagtgctt
     3841 caaccgcgcc gtcggcatcg ccagcgcagc ggcgactgtt tccgaggttg ttccagctct
     3901 cccaatccgt cggagacact gcaacaatcc gttcataggc agcaatcgcg cttgcatgtt
     3961 ggccgagtga ctgcgccgca aacgcccgca agcgttgcaa acgcaggctt tggtccgccg
     4021 ccgcaagctc ctccgaggcg acggccagtg cctcttgata gagttccaac tgcgccaagg
     4081 cggtgccgag attgatagcg attgtgacgt cgtcagggcg catcgcgtgc gcaatgcgga
     4141 gatgccgggc ggcaccttcg aagtcagcac tcctcaggca gaaagtaccc agcatcgcgt
     4201 ttaatggtgc ctcgtcgcca ccggccgcca aggccgcttc gccaatccgt cgcgcatcgg
     4261 cgatgcgccc gttgcttgcg gaagcaagcg cttcgcggat tgccgaagcc gtgcgaggat
     4321 cgagcgcagt actgccgagc atgtcagccg ttttagcgtc ctaaccacca agtgccagcc
     4381 tggcgattcg tataaaaaga aagggcggcg ggtcaccccg ccgccccaac tttttcgtca
     4441 cagactagac cttattcgcc acgctccgga gccggtgccg gcggcggcgg cggtgggggc
     4501 ggcgccgggc aagtcgctgt cgccaggatc accgatccat cggggcaagt ctgcgttgcc
     4561 ggagccgctg gcggcggcgg tggcggcggc gcaactggcg ctggcggcgg tggtggcggc
     4621 ggagccgggt ggtgaccaaa ggttacggtc gcaccggcgt agatgaagcg cccgagcgca
     4681 tcatacgtcg tcacccacac gttgttgttg cacggcccgg ccgggcagat gccaccgctc
     4741 gcaacaagcg gcgggagccg atcgaagacg ttgttgacac cagcacggag cgcaaccgca
     4801 tcatggaaca gcgaatatgt caggccgagg tcaaaatagt cgaacgaagg cgtgtggccg
     4861 ccaagatcga agtgcgtgcc gctgagcgtc gggttgctgc tgtaaccctc gtacgtgccg
     4921 ctcgacaggt ggcgccactg accggagacg ccaagcccaa tcggcgtatc ccaagttacc
     4981 cgcagcttgt gcctccactt cggaatgagc gagccgcaag tgctgccgaa cagaccgaca
     5041 cagttataag gtgcggttag gccgttatcg acttcgtact tgtgcaccca tgtgccctgg
     5101 aacgacgtcg agaagcttcc ccagcggccg agaccgtgcg aataagccgc cgaaacgtcg
     5161 ataccatcgg tcttgtcgct accaacgttg tgcggaatgt ccgtcacata accgttggac
     5221 gtaagccaca gggatcccga cggatcgcga tggacaagtg cgcacgaagc cgcagtggtc
     5281 gtcgcggttg tcttggtcgg atcgacgcag tcggcgagga tcgcatcggc accgaagccc
     5341 tggatcgcgc ccttgatcgt gatgttccag tagtcgacgg tcaccgcgaa gcgattgaag
     5401 aaccgcggct gcaagacgac gccgacggtc ttggtcgtcg ccgtttcggg cagaaggctc
     5461 gggttgcctc cgacgaagcc gttatactgc gaggccggat tgagcggcgt cacctggccg
     5521 acccgcatac cctgtgcgag acagccatat tcggttgccg tgattgcgtg gccggcgcac
     5581 ggatcggtac cgccgtcgag cgcgacgtgt tgcgtcgtga agagctcggc gatgttcgga
     5641 gcgcgtaccg cccggttgta ggcaccgcgg aaccggatgt cgtggatcgg cgcgaagtcc
     5701 gcggagatct tgtacgagtc cgtattgtag ccgccgcccg tgctggtctt gtaccaggaa
     5761 cgacgatagc ccgcattgac cgacagttcg tcgaagaacg agtgctgcac gatcgggatt
     5821 tggacttcgc cgaacagctc gttgacgtgg aagctgccac tgatcggcag tgtcggcgat
     5881 ccctggccgg tgaggtcacc ggtctggaat tcctggtccg gattgagctg cagtgattcc
     5941 ttgcgatact cgtagccgac gttcacgccg acgccgtcgt tcgcccacgg gaactgccag
     6001 cccatctttc caagatcgcc cgtcacgttg acgtcagcaa tctgctcgga cgtacggccg
     6061 gtgatgacgc catacacgtt cagatagttg atggccgctt gcgacggacc ggcggctccg
     6121 aagatgtcgt agggaacgca attgttatcc gtgccagcga gaaccgagcg gcactcgatc
     6181 accgatcccg gtgtgccgac tggaacgacc tggccagccg aatttacgtt cacgacattg
     6241 agagcattcg tcaggcgagt tgccgagaac tcgttgcgat agacctgctc atagtcggtc
     6301 cgaccatatt gatagtaggc atcgtacgag aagacgtcgc tgaggtcgcc gcgcgtacca
     6361 atgacaccac ggtaggtcgt gtgggtaagg tcggcctgcc ggtcgccacc ctcgacgttg
     6421 cgccgaagga gctgaccaaa ggcttcgttg taggtgttgc cgcgcgcgtc atagaacgtg
     6481 accggcggtg cgtttggcgt cggattgaag ctcgccgcct gcgctgcggg gaaacttccg
     6541 acaaaccccg tgatcatgtt cgacgggttg cagattgccg ttcgctgctg cgcgctcatc
     6601 agcgggttgt cgcagttgat cgtcagcgtg ttcccgaagt cacccgacgg cgcgatctgc
     6661 gcaaccgtgt gatcgtccat gaacatgaac tcgaggtacg gcttgattgc aggattgaca
     6721 tcgtagtgcg cgaagaggcc agcggtgtac cgctcgtccg gacgctggaa atagttcagc
     6781 ggaccatagt tgaagacgtt tggagcgccg ccgacattga ttgtgcccgg tccgagagcc
     6841 ccgtaggttg agctggtgcc accgttcggg aacacgatga ggttgcccgg atcagcagtt
     6901 gccgaaccac cgcagctatt cttgttgtgc gcactgttct cggtgatcgt gcaagcgctg
     6961 tagtcgcggt ttgcaccgag aatcggattg atcttgcgat agccgaaata ggcgaccaca
     7021 tggccgcggc cgtcatcaaa tccagcgccg aacgccgcgg ttccatcaac agaacgcccg
     7081 tccgtcgcgc tccccgtcgg gaacgggaaa ttcttggcat tgagaatgcc ccgcatcgtc
     7141 tgaccaccaa tgaggtcagc gtcgcggtta tcatgctggt agatcgacca ggtgccatcg
     7201 aggcggagcc cgtcgaagtc cgtatccatg atgaagttga caacaccggc aacggcgtcc
     7261 gcgccgtaca ccgacgatgc accgccggtc agcacgtcga ctcgcttgat cagcgacgcc
     7321 ggaatgaggt tgatatcagc tgcctgtgtc gtgctgttcg gatcgcccgg cgtcatgcgc
     7381 cgaccgtcga tcaggacgag cgtgcgcttt gcgccaagat agcgaagatc gacttccgcc
     7441 gtaccggatg cagcgttgga gaaaccagag ctctgcgaaa ctgccgcgga cggaagctgc
     7501 gcaagcacgt cttcaatccg gcttgtaccg gaaagcttga tgtcctggct gctgacgacg
     7561 gaaaccggcg cagtggactg aaggtttggc tgcggaatac gcgagccggt gatgacgatt
     7621 tcctggcggc ccgtaacttc tccgccctgc gcgttcgtgc tcggcagtgg ctgggattca
     7681 actgggcctg taggcggagc ggccgcggct ggaacactgg tcgagtccgg cggcgtcggc
     7741 tgggcattgt cagcagcaaa cgcgggcgaa gcaatcatgc tcgtgccgac cagaatggac
     7801 gtcgcgagca atcgctgacg gaaatcgagc ttcatgtagt ctcccctttt gggtggctgc
     7861 ggacgaaccg agccttcttc aaaacggcaa aacgagtctg ccgaactatc cttatcgata
     7921 gtagaggcgc tgagtaggtg gcaacgcttt gcggaccgtt ccggctaagt taccaaggga
     7981 atgtagcatt attgcaacag catcgatcaa ggtcagcgag gctgctgtta tcgctaacac
     8041 aggtgctttt tccttgattt cacagaggtt tatcggcgtc cgtaacttcg aacagccgaa
     8101 cgatcatcga tcgctcgtcg tcgctcaaat gagggttcca gcagtcaaag atcagcacgg
     8161 cccgatcctt gtcactgcgg ttccacgctt catgttcgat cgtatcatcg aacgcaaagg
     8221 cctcgccctc acgccattcc ctggtttcgc cgccaacgcg gaacgaacag cccggaggaa
     8281 caataagcgg caggtgaacg atcgtccgcg tgttcgtgac gccggtatgc ggagggatgt
     8341 gtttgccagc ctgcaggatg gaaaagaaga tcgtcggcgc tcgcccgggt actcgcgcga
     8401 gcggcaggct ttcaacgatt ctcgctgtct caggcgcgcg tcggcacgcc tcgtcaatcc
     8461 gcacgccctc cttccaaagg tggagcgcgc tccatgaata gttgttgtta agctcgctcc
     8521 agatgttcgg gggcgtgcca gcgggcatcg tcacgtatgg cgaaagcccg gcatcgttcg
     8581 atgagagaag ttcgagaagc tctttgcgaa tgatgtcggt ctgcgcttcg atgcttccaa
     8641 gccatgggaa atgttcccga tcgaagaact cgtcggccgg aaggaagggg tagtgaactc
     8701 caaagcactg attggtgtag atgcgccgtc gtccaagcat gtgatcgatc gccgccgtca
     8761 accgtcgttg gtccctcggc gctgcggagg aaagcatgga tgcgagttct tggccgagat
     8821 tttcggcgag acggctcgtt cgctcggcaa cgaaagaatg cgcatgctcg aagatcttgc
     8881 gaagatctgc cggagggcct gcataggcgc ttgagagagc cacaacagca gtccagcgct
     8941 tggttgcgtc ggcgatttcg ccgcggcgct cgtgcagttc tgccagccga atattcgcca
     9001 tgaggtggcg ctgatctgtc tcgagcgccg cctcgagtgc cgttcgttcg gctgcatcgg
     9061 cagaaagtag c
//
LOCUS       DASRBJ010000184         4370 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_582979,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000184 DASRBJ010000000
VERSION     DASRBJ010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4370
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_582979"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..191)
                     /locus_tag="VE968_05155"
     CDS             complement(<1..191)
                     /locus_tag="VE968_05155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51248.1"
                     /translation="MPFDLATIALAAFILQPPSTANGALSTNSAPQGTATTRYCMHVG
                     PLTGEIADRIECWTREEWA"
     gene            514..885
                     /gene="rpsL"
                     /locus_tag="VE968_05160"
     CDS             514..885
                     /gene="rpsL"
                     /locus_tag="VE968_05160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020185797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HZU51249.1"
                     /translation="MPTINQLIRKGREPQKAKSKVPAMEQNPQKRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTNQREVISYIPGEGHNLQEHSVVLIRGGRVRDLPGVRYHVLRGVL
                     DTQGVKDRKQSRSKYGAKRPK"
     gene            953..1423
                     /gene="rpsG"
                     /locus_tag="VE968_05165"
     CDS             953..1423
                     /gene="rpsG"
                     /locus_tag="VE968_05165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005862793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HZU51250.1"
                     /translation="MARRRRPEKREVLPDPRFGHLFLSKFMNSVMLDGKKSVAEGIVY
                     GALDNVEARLKRDPIGVFHDALNNVKPGIEVRSRRVGGATYQVPVEVRPERAQALAIR
                     WLISAARSRSEKTMAGRLSGELMDASQNRGNAVKKREDTHRMAEANRAFSHYRW"
     gene            1490..3583
                     /gene="fusA"
                     /locus_tag="VE968_05170"
     CDS             1490..3583
                     /gene="fusA"
                     /locus_tag="VE968_05170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HZU51251.1"
                     /translation="MARSHPLERYRNIGIMAHIDAGKTTTTERILYYTGKSYKIGEVH
                     EGTATMDWMEQEQERGITITSAATTCFWRADEGKGEEHRINIIDTPGHVDFTIEVERS
                     LRVLDGAVACFDGVAGVEPQSETVWRQAEKYRVPRMCFVNKLDRTGANFEMCVGMIKD
                     RLGARPAVLYLPIGIESGFKGLVDLVENRAIIWLEESLGAKFEYQEIPAELADAAAAA
                     RQELIEMAVEQDDAVMEAYLEGTEPDTATLKRLIRKGTLNFSFVPVLCGSAFKNKGVQ
                     PLLDAVVDYLPSPIDIPPVEGVKPGTDEPDTREASDTAPFSALAFKIMNDPFVGSLTF
                     ARIYSGKLEKGTVLNSVKDKKEKIGRMLLMHANNREDIETAYAGDIVAIAGLKETTTG
                     DTLCDPNKPIVLERMEFPDPVIEVAVEPKTKADQEKMGIALNRLAAEDPSFRVTTDHE
                     SGQTIIKGMGELHLEILVDRMKREFKVEANVGAPQVAYREYLAKPVELTYTHKKQSGG
                     SGQFGEVKVKLVPGERGSGFQFIDEIKGGNIPREYIPSVEKGMRETAETGSLIGFPIV
                     DFEVHLIDGKYHDVDSSALAFEITGRGAMREAAQRAGIKILEPMMKVEVVTPEDYLGD
                     VIGDINSRRGQIQGTDSRGNAQVVEAIVPLANMFGYVNQLRSFTQGRAQYTMQFSHYD
                     EVPQNVADEVKAKLA"
     gene            3658..>4370
                     /locus_tag="VE968_05175"
     CDS             3658..>4370
                     /locus_tag="VE968_05175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011240421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HZU51252.1"
                     /translation="MAKAKFERNKPHVNIGTIGHVDHGKTSLTAAITKVLAEKGQAEF
                     TDYANIDKAPEERERGITISTAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTKEHILLAKQVGVPTMVVFLNKVDQVDDPELLELVELEIREELSK
                     RDFDGDNIPIVAGSALAALEDSNREIGHDAILKLMDAVDDWIPTPERPLDKPFLMPIE
                     DVFSISGRGTVVTGRVETGV"
BASE COUNT          936 a         1293 c         1349 g          792 t
ORIGIN      
        1 tgcgcccatt cttcccgggt ccagcattcg atcctgtcgg caatctcccc cgtcagcggc
       61 ccgacatgca tgcaatatcg cgtcgttgct gtcccttgtg gagcggaatt ggtcgatagt
      121 gcgccgttcg ccgttgacgg cggttgcaga atgaatgccg caagagcaat tgtcgcaagg
      181 tcgaatggca tgcacgtgtc tcccgtcgac tcaagactcg gggggtgccg atggctcatc
      241 actagtttgt gctctttggt catgcgagtt tctttcgacg agcggtgcgc ccgcatctgt
      301 tggacctgac ctggtggttg accctaagag gcgccgtcgc tatgtgcccg acgtccgcgc
      361 gagaggaatg gttgttcgct ggcgccggac aagagctgaa cattgctcga agacgtgaaa
      421 gccgggcggc taaaaggctg tcgggacttc acgctttttg ctttgggcaa agtaaccgcc
      481 gggacttccg gcacagacaa ggtgaagggc ttcatgccaa cgattaacca gctgatccga
      541 aagggtcgcg aaccgcagaa ggccaagtcg aaggtccctg caatggagca gaacccgcaa
      601 aagcgtgggg tctgcacccg tgtgtacacg acgactccga agaagccgaa ttcggcgctt
      661 cgcaaggtcg ctaaggtgcg gctcaccaac cagcgcgaag tgatcagcta catcccgggc
      721 gaaggtcaca atctccagga gcacagcgtc gtgttgatcc gcggcgggcg tgtccgcgac
      781 ctccccggcg tgcgttatca cgttcttcgt ggagtgctcg acacgcaagg cgtcaaggat
      841 cgcaagcaat cgcgttccaa gtacggcgcg aagcgtccca agtaatcaag ccagagtaag
      901 ccccgggcgg taacaagtcc cggaacaggc tgaagagaga aaggatagtc caatggctcg
      961 tcgccgccgt ccggagaagc gtgaagttct cccggatcct cgtttcgggc atcttttcct
     1021 ctccaaattc atgaattcgg taatgctcga tggcaagaag tcggtcgccg aaggcatcgt
     1081 ctatggtgcg ctcgacaatg tcgaggcgcg gctgaagcgc gacccgatcg gagtgttcca
     1141 cgatgcgctc aacaacgtaa agcccggcat cgaagttcgc agccgacgcg ttggtggtgc
     1201 gacgtaccag gttccggtgg aggtccgccc cgagcgcgcg caggctctcg cgatccgttg
     1261 gctcatctca gccgctcgga gccgttcgga aaagacaatg gctgggcgtc tctcgggcga
     1321 actcatggac gcttcgcaga accgcggaaa tgccgtgaag aagcgcgagg acacccatcg
     1381 catggccgag gcaaaccgcg ccttcagcca ctaccgctgg taaaaatcgt acctatattc
     1441 ggggaagccg gatccgccgg ctccccacac tgctaaggaa ctgacgaaca tggcccgcag
     1501 ccatccgctc gagcgctacc gcaatatcgg catcatggcg catatcgacg ccggcaagac
     1561 gacgacgacg gagcgcatcc tctattacac cggcaagtcc tacaagatcg gtgaagttca
     1621 cgagggcacc gccacgatgg actggatgga gcaggaacag gagcgtggca tcacgatcac
     1681 gtccgctgcg acgacctgct tctggcgcgc ggacgaaggc aaaggcgaag agcaccggat
     1741 caatatcatc gatacgcccg ggcacgtcga cttcaccatc gaggttgagc gctcgctgcg
     1801 cgttcttgac ggcgcggtcg cctgcttcga cggggttgcc ggcgtcgagc cgcaatcaga
     1861 aaccgtttgg cggcaggccg agaagtaccg cgttccgcgc atgtgctttg tcaacaaact
     1921 cgaccgcacc ggtgcgaact tcgagatgtg cgttgggatg atcaaggatc ggctcggtgc
     1981 acgtccggcc gtgctctatc tgccgatcgg tatcgaaagt ggcttcaagg gccttgtcga
     2041 cctcgttgag aatcgcgcca tcatctggct tgaagaaagt ctcggcgcga agttcgaata
     2101 tcaggaaatc ccggctgagc ttgccgatgc cgctgctgcg gcacggcagg agctcatcga
     2161 gatggccgtc gagcaagatg atgcggtgat ggaagcctat ctcgagggca cggagcctga
     2221 cacggccacc ctcaagaggc tcatccgcaa aggaacgctc aatttctcgt tcgttccggt
     2281 gctttgtggc tccgcgttca agaacaaggg cgtgcagcca ttgcttgatg ccgttgtcga
     2341 ttatttgcca agcccgatcg acatcccacc cgtcgagggc gtgaagccag gcacggacga
     2401 gccggacacg cgcgaggcct cggacaccgc tcctttctca gcgctcgcct tcaagatcat
     2461 gaacgacccg tttgtcggct cgctcacctt tgcgcgcatc tactcgggca agctcgagaa
     2521 gggcacggtc cttaactcgg tgaaggacaa gaaggaaaag atcgggcgca tgctgctcat
     2581 gcatgcgaac aatcgcgaag acattgagac ggcctacgcc ggcgacatcg tcgcgatcgc
     2641 tgggctcaag gagaccacga ccggcgacac gctgtgcgac cccaacaagc cgatcgtgct
     2701 tgagcgcatg gagtttccgg atcccgtcat tgaagttgcc gtcgagccca agaccaaggc
     2761 cgaccaggag aagatgggca tcgcgctcaa tcgactcgct gcggaggacc cgagcttccg
     2821 agtcacgacc gaccatgagt cgggccagac gatcatcaag ggaatgggtg agcttcacct
     2881 cgagattctc gtcgatcgaa tgaagcgtga gttcaaggtc gaggcaaatg tcggcgcccc
     2941 ccaggtcgcc tatcgcgagt atctcgcaaa gcccgtcgag cttacctaca cccacaagaa
     3001 acagtcgggc ggctctggcc agttcggcga ggtgaaggtg aagctcgtcc ccggcgagcg
     3061 gggcagtggg ttccagttca tcgacgagat caagggtggc aacatcccgc gcgagtatat
     3121 cccgtcggtc gagaagggca tgcgcgagac ggcggaaacg ggttcgctca tcggcttccc
     3181 gatcgtcgat ttcgaagtgc acctcatcga cggtaagtac cacgacgtcg actcgtcggc
     3241 acttgccttc gagatcaccg gtcgcggtgc gatgcgcgag gcggcgcagc gcgctggaat
     3301 caagatcctc gagccgatga tgaaggtcga ggtcgtcact cccgaggatt atctcggcga
     3361 cgtgatcggc gacatcaaca gccggcgcgg ccagatccag ggcaccgaca gtcgcggcaa
     3421 cgcccaggtt gtcgaggcaa tcgtgccact cgccaacatg ttcggctacg tgaaccagtt
     3481 gcgttccttc acgcaggggc gcgcgcagta cacgatgcag ttctcgcact atgacgaagt
     3541 gccgcagaac gtcgccgacg aggtgaaggc gaagctagcg taactgcgaa tttgtagtta
     3601 tgggcgcgtc cgcgatgagg gcgggccgcc cgaattccag aaaagaagag gcgtaaaatg
     3661 gcgaaggcta aattcgagcg gaataagccg cacgtgaaca tcggcaccat cggtcacgtc
     3721 gaccatggca agacctcgct caccgcggcg atcacgaagg ttctggcaga gaagggccag
     3781 gccgagttca ccgactatgc gaacatcgac aaggcgccgg aagagcgcga gcgcggaatc
     3841 accatttcga ctgctcacgt cgagtacgag accgacaagc gccactatgc gcacgtcgac
     3901 tgcccggggc acgccgacta tgtgaagaac atgatcacgg gcgccgcgca gatggatggc
     3961 gcgatcctgg ttgtctcggc ggctgacggc ccgatgccgc agacgaagga gcacatcctt
     4021 ctcgccaagc aggtcggtgt tccgaccatg gtcgtcttcc tcaacaaggt tgaccaggtc
     4081 gacgacccag agcttctcga gctggtcgag cttgagatcc gcgaagagct ttcgaagcgt
     4141 gacttcgacg gcgacaatat tccgatcgtt gccggttcgg ctcttgctgc actcgaggac
     4201 agcaatcgtg aaattggcca cgacgcgatc ctcaagctga tggacgccgt tgacgactgg
     4261 attccgactc cggagcgtcc gctcgacaag ccgttcctga tgccgatcga agacgtgttc
     4321 tcgatctccg gccgcggcac cgtcgtgacc ggccgtgtcg agactggcgt
//
LOCUS       DASRBJ010000185         3905 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_18287,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000185 DASRBJ010000000
VERSION     DASRBJ010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3905)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3905)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3905
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18287"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..457)
                     /locus_tag="VE968_05180"
     CDS             complement(<1..457)
                     /locus_tag="VE968_05180"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HZU51253.1"
                     /translation="MRNDEIHAALRILRREVKQWQEPVVGVVAKESRDPFRILIACVL
                     SLRTKDRTTAEASQRLFALASTPSAMRDVPVATIEKVIFPVGFYRVKAKQIHAICEQL
                     LNAFGGRVPDSIDELLTLPGVGRKTANLVVTVGYQKPGICVDIHVHRISN"
     gene            complement(503..697)
                     /gene="rpsU"
                     /locus_tag="VE968_05185"
     CDS             complement(503..697)
                     /gene="rpsU"
                     /locus_tag="VE968_05185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HZU51254.1"
                     /translation="MEIKVFNNNVEKALKVAKKKLAGEGLFRELKRRRFYEKPSVRRK
                     AKQREAQRRRQKWLAKRRMD"
     gene            complement(750..2294)
                     /gene="ftcD"
                     /locus_tag="VE968_05190"
     CDS             complement(750..2294)
                     /gene="ftcD"
                     /locus_tag="VE968_05190"
                     /EC_number="2.1.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR02024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030409 - glutamate formimidoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0030412 - formimidoyltetrahydrofolate
                     cyclodeaminase activity [Evidence IEA];
                     GO_process: GO:0019556 - histidine catabolic process to
                     glutamate and formamide [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate formimidoyltransferase"
                     /protein_id="HZU51255.1"
                     /translation="MDRIIECVPNFSEGRKPETIDALVTTAIEVAGVYLLDREMDHDH
                     HRSVLTFAGSPEAVAEAAFRCVRVASTLIDLRSHQGAHPRVGATDVVPFVPIRGVTMD
                     DCVALARQVGARIGRELNIPVFLYERAASRPDRVNLEAIRRGGLEGLTARMTEEAWRP
                     DFGPAALHSTAGATIVGARPPLIAFNVNLQSTDLPAAKAIAKAVRFSSGGLPFVKAIG
                     VDLTSRGLVQVSMNLTNFEETPLHVAFEAVAREAERRGIAVAESEIIGLIPQRALLQV
                     AQHALKVARFDADQVLETRLDHALAGARQQSTATRSTDGIARSVTQFLSAVAQGTPAP
                     GGGSVAALAGALAASLGLMACRLGPPKRQPSGGTSDEEAAAQVRAAEPILLMHATRLQ
                     ALIEADAAAYQEVLEAYRLPKSDPSRETRVTETLLSASRIPLETAERAHEAARLLLDV
                     RRYAKASVGSDVRVGLFMAIAAMEGGLENARENMKSLKNQTLAEDIQQRIGKLEESLV
                     QLKALC"
     gene            complement(2297..3475)
                     /gene="hutI"
                     /locus_tag="VE968_05195"
     CDS             complement(2297..3475)
                     /gene="hutI"
                     /locus_tag="VE968_05195"
                     /EC_number="3.5.2.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR01224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050480 - imidazolonepropionase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazolonepropionase"
                     /protein_id="HZU51256.1"
                     /translation="MAEIGLIKNGAVYIRNGRVAAVGRRSSVRRMPGATRARTIEATD
                     AVVLPGFVDSHTHALFVGTRVDEYVARLRGATYEEIAEAGGGIQASAARLRRASPSSL
                     VEHLVRVAPLFFEYGTTTAEVKSGYGLDVRQELKMLEAIRHAARRTPFEFVPTVLCHD
                     VPAALKTDRGRYVKQVMDWLLPTVAGRRLAEFCDVFCDRGYFTVAEAKRMLKAAGGAG
                     LKLKLHAEQLAHTGAARMAAALNAVSVDHADHIGDVDMAALEKHGTIATLLPGSTFHL
                     GDHRYAPARRLIERGIPVALATNFNPGSSPTLNMQMILSLACSQMRMMPSEAIVAATF
                     NGAHAVGRADRLGSLERGKQADLVIMDVTDYREIPYFFAMNHCRMVIKNGRVVYARER
                     "
     gene            complement(3652..>3905)
                     /locus_tag="VE968_05200"
     CDS             complement(3652..>3905)
                     /locus_tag="VE968_05200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51257.1"
                     /translation="SADFVGGSGKDLAEAIRHAARESEYRYFWFDYASSAKEAHDLEH
                     SWYHRYRPSDNPAPPNSVVSSAWRCTIRGCAACALAAAR"
BASE COUNT          728 a         1237 c         1195 g          745 t
ORIGIN      
        1 gattgctgat ccgatggaca tggatatcca cacagatccc cggcttctga tagccgaccg
       61 tcacgacgag gttcgcggtc ttgcgcccta cgcccggcaa ggtcaggagt tcatcgatcg
      121 aatcggggac acggccgccg aatgcgttca agagctgctc acagatggca tgaatctgtt
      181 tggctttcac tcgataaaag ccgaccggga agatgacctt ctcaatcgtg gctaccggaa
      241 cgtcgcgcat cgcggagggt gtagaagcga gcgcgaacaa ccgctgactc gcctccgcgg
      301 tcgtccgatc cttggtcctg agactcagga cacaggcgat cagaatccgg aacgggtcgc
      361 gggactcttt ggccacgaca ccgacgaccg gctcttgcca ctgtttgact tcgcgacgaa
      421 ggatacgcag cgcggcgtgg atttcgtcat tccgcatgga ggaggagcga ggaggaagaa
      481 ccgagacgga gggagagaac gcttagtcca ttcgacgctt ggccagccac ttctgccgtc
      541 ggcgctgcgc ctcgcgttgc ttcgccttgc gccggacact cggcttttca taaaatcggc
      601 gtcgcttcag ctcacggaac aggccttcgc cggccagctt tttcttggcg accttcagtg
      661 ctttttcgac gttattattg aagactttga tttccattgc gtacgcgatc tgccttctgc
      721 ttggtgatgt ctgtcggaag gacaggagtc tagcataggg cctttagttg cacaaggctt
      781 tcttcgagtt ttccgatgcg ctgttggata tcttcggcaa gagtttgatt cttcaaggat
      841 ttcatatttt cacgggcatt ttccaacccg ccctccatcg cggcgatcgc catgaacaag
      901 ccgacgcgaa cgtccgatcc gaccgaggcc ttggcatagc gccgcacatc gagcaggagt
      961 cttgcggcct catgggcgcg ttcagcggtc tccagtggaa tgcgactcgc gctgaggagt
     1021 gtctcggtga cccgcgtctc acgacttgga tcggatttcg ggagccgata ggcttccagc
     1081 acctcctgat aggccgcagc gtcggcttcg ataagcgcct gaagtcgcgt cgcgtgcatg
     1141 aggaggatcg gctcagcggc ccgcacctga gcggccgcct cttcatcgct ggtccctccg
     1201 cttggctggc gcttcggggg gccgagtcga caggccatga gccccagcga tgcggcaagg
     1261 gcacccgcga gtgcggcgac gctgcccccg cccggggcgg gagtgccttg cgccaccgcg
     1321 gacaggaact gagtcaccga acgggcgatt ccgtcggtcg acctagtggc cgtcgattgc
     1381 tgccgagcgc ccgccagcgc gtgatcgagt ctggtctcaa gaacctgatc ggcgtcgaac
     1441 cgggcgactt tgagcgcgtg ctgcgcaacc tggagcagcg cgcgttgcgg gatcaacccg
     1501 atgatctcgc tttcggccac ggcgatccca cgccgctcgg cttcccgcgc gacagcctcg
     1561 aacgcgacgt gaagcggtgt ttcttcgaaa ttggtcaggt tcatcgagac ctggacgaga
     1621 ccgcggctgg tgagatcgac gccgatcgct ttcacgaacg gcaagccgcc gcttgaaaac
     1681 cggactgcct tcgcgatcgc ctttgccgcc ggcagatcgg ttgactgtag gttgacgttg
     1741 aaggcgatca gcgggggccg cgcgccaacg atcgtcgccc cggcggtcga atggagcgcg
     1801 gccggaccga agtccggccg ccacgcctcc tcggtcattc gagccgtcaa tccttccaat
     1861 ccaccgcgtc gaatcgcttc gagattgacg cgatccgggc gagacgctgc ccgttcgtag
     1921 agaaagaccg ggatgttgag ctcccgcccg atacgcgcgc ccacttgtcg ggccaatgca
     1981 acgcagtcgt ccatggtgac gccgcggatc ggcacgaacg gcacgacatc agtggcgccc
     2041 acgcgaggat gtgcaccttg gtggctgcgc agatcgatca acgtgctcgc gacacggaca
     2101 cagcggaacg cggcctccgc gacggcttcc ggtgagcctg cgaacgtgag gacggaccga
     2161 tgatgatcgt ggtccatctc ccgatcgagg aggtacacgc cggccacctc gatcgcagtg
     2221 gtgacgagcg catcgatcgt ttccggtttt ctcccttcgc taaagttcgg cacgcattcg
     2281 atgattcggt ccatcgttac ctttcccttg cataaacgac gcggccgttc ttgatgacca
     2341 tccggcagtg gttcatcgca aagaagtatg gaatctcccg gtaatcggtc acgtccatga
     2401 tcacaaggtc cgcctgcttg ccgcgctcca aactgccaag acgatcagcc cggccgacgg
     2461 catgcgcgcc gttgaatgtg gcggccacga tggcctcgga cggcatcatt cgcatctgcg
     2521 agcaggccag cgagaggatc atctgcatgt tgagcgtggg cgaactcccg ggattgaagt
     2581 tcgtcgccag cgcgacagga atgcctcgct cgatgaggcg acgcgcgggc gcatatcggt
     2641 ggtccccgag atgaaacgtg gagccgggca acagagtcgc aatcgtgcca tgtttttcga
     2701 gtgcggccat atcgacatcg ccgatatgat cggcgtgatc gaccgacacc gcgttcagcg
     2761 cagcggccat gcgcgcggct cccgtgtgcg caagctgctc ggcgtggagc ttgagcttga
     2821 gcccggcacc tccagcggcc ttcagcattc gtttggcctc agcaaccgta aaatatccgc
     2881 ggtcgcagaa aacgtcgcaa aattccgcta agcgccgccc agcgacagtc gggagcaacc
     2941 agtccatcac ctgcttcacg taccgcccgc gatcggtctt cagtgcagcc ggcacgtcat
     3001 gacagagcac ggttgggaca aattcaaacg gtgtccttcg cgcggcgtgc cggatggctt
     3061 ccaacatctt gagttcctgt cgcacgtcca acccatagcc gctctttact tcggccgtcg
     3121 tcgtgccgta ttcgaagaac agcggcgcaa cgcgaaccaa atgttcgacg agcgacgacg
     3181 gcgaggctct tcgcaaccga gccgcactgg cttgaatacc gccacccgct tcggcgatct
     3241 cttcatacgt ggccccccga agacgcgcca cgtattcatc gacccgtgtc ccgacgaaca
     3301 gcgcgtgcgt gtgcgagtcc acgaacccag gcaaaaccac cgcatccgtc gcctcgatag
     3361 ttctcgcgcg ggtggcgccc ggcatccggc gtacggagga ccggcgtccc acggcagcga
     3421 cccggccgtt ccgaatgtac acggcgccat tcttgatcag gccgatctcg gccatgtcgc
     3481 ggccctttct tggaccgggc ggtcccgcga gcgtcaagag ctgaccgcag ggatcgatca
     3541 acagatcggc agagcgagaa gagacagtca cggtaggatc gctacgtgag ccttgcgcta
     3601 ccgtagccag tcccccacga cgtgtcaagg cgagcggagc ggcgcgcttc cttacctggc
     3661 ggcagcgagc gcgcaggcgg cacaacctcg gatcgtgcac cgccatgcgg agcttacgac
     3721 gctgttcggc ggcgcgggat tgtcacttgg ccgatagcga tgataccaac tgtgctccag
     3781 gtcatgggct tctttcgccg atgacgcgta gtcgaaccaa aaataacggt actcgctctc
     3841 gcgggccgcg tgtcggatcg cttccgccag atccttgccg ctgccgccga cgaagtcagc
     3901 cgagc
//
LOCUS       DASRBJ010000186         3089 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_324260,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000186 DASRBJ010000000
VERSION     DASRBJ010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3089
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324260"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2548)
                     /gene="polA"
                     /locus_tag="VE968_05205"
     CDS             complement(<1..2548)
                     /gene="polA"
                     /locus_tag="VE968_05205"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HZU51258.1"
                     /translation="MSEADPSARPHLYLVDGSSYIFRAYHRLPPLTNRHGAPAGAVYG
                     YTTMLWKLADGLTRADGPTHMAVVLDASEHTHRNEMYDQYKAHRPPPPEDLVPQFPLI
                     RVATRAFSIPCIEEAGLEADDIIACYVTAAREAGWKVTIVSSDKDLMQLIDEDAGIDM
                     LDTMNDRRIGRAEVLEKFGVPPEKVGDVLALMGDSVDNVPGVPGIGPKTASQLIQQFG
                     DLETVLASTDHISKPKLKQSLIDHAQSARLSRELVRLVCDAKLPEPLDALLMKGIPPE
                     PLREFLEDQGFKSLLNRLNGTRPAQGRSSSGGGINDVMASLERKPSGPAPAEQIDVDR
                     SKYETVIDENALDRLIEEARSSGFVAIDTETDCLDCIVAKFAGVSIATAPNRAYYIPV
                     GHSGADLYSDAPSQLPLELVLSKLKPLLEDPSVLKIGHNVKYDWVMFEKAGIEVAPLD
                     DTMIMSFDLDAGRSFGHGLDELAKLHFDHECISFKQLCGSGAKQITFDKVPLDAATEY
                     AAEDADIALRLWLRLKPRISGEGAARVYERVDKPLVPVIARMERRGIKVDREYLARLS
                     ADFGRDIQALEEKIYEAACGPFTIGSPQQLGQVLYDRLGLKGGRKGKSGNYSTDVNEL
                     ERLAAEGVECARLVLEWRQLTKLKSTYTDALQAVINPETGRVHTSFSLTGAQTGRLSS
                     NDPNLQNIPIRTEVGRKIRDAFVADPGNLILSADYSQIELRLAAHMADVPQLKDAFRN
                     GADIHSLTAEELFGTVDRETRNRAKTVNFAILYGISSWGLAGRLGVSKDEGKAIIDRY
                     FERFPGINAYIHSTLAAAREEGFTRTLFGRRTHFLPNIRSSNPSIRGGAER"
     gene            complement(2793..>3089)
                     /locus_tag="VE968_05210"
     CDS             complement(2793..>3089)
                     /locus_tag="VE968_05210"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542600.1"
                     /note="catalyzes the formation of oxaloacetate from
                     L-aspartate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HZU51259.1"
                     /translation="IAQTWGEIRRFMWNYVGIVRTTKRLERAKHRIDMLRQEVTDYYG
                     HFRVTPDLIELRNLVEVADLVIRSALSRHESRGLHFTLDYPGMLSEPKDTILIP"
BASE COUNT          605 a          884 c          912 g          688 t
ORIGIN      
        1 ctcgctcggc gccgccgcgt atcgaaggat ttgatgaccg aatgttcggc aggaaatggg
       61 tccttcgacc gaacagggtt cgcgtgaagc cttcttctcg tgcagccgca agagtggaat
      121 gaatataagc gtttatgccc ggaaagcgtt cgaagtaacg gtcgatgatc gcctttcctt
      181 cgtctttcga aacgccgagc cgaccagcaa gtccccacga ggaaattccg taaaggattg
      241 cgaaattgac cgttttcgcc cggttgcgag tctcgcgatc gaccgtgccg aaaagctcct
      301 ccgcggtcag gctgtgtata tcggcgccat tccggaatgc gtccttaagc tgcgggacgt
      361 ccgccatgtg cgccgcaagc ctaagttcga tctggctata gtcggcactc agaatcaaat
      421 tgccgggatc agcaacgaac gcatcgcgaa tttttcgacc gacttccgtc cgaatcggaa
      481 tgttctgaag attgggatcg tttgatgaca gtcggccagt ttgcgcgcca gtcagcgaaa
      541 agctggtatg cacgcggccc gtttcgggat tgattacggc ctggagggcg tcggtgtagg
      601 tcgacttgag cttcgtgagc tggcgccatt cgagaaccag ccgcgcacac tcgacccctt
      661 cggcggccaa tcgctcaagc tcgtttacgt cggtggaata gttgccgctc ttgccttttc
      721 gcccgccctt cagtccgagc cggtcgtaga gcacctggcc cagttgctgt ggcgagccaa
      781 tcgtgaacgg gccgcaggca gcctcataga tcttttcttc gagcgcctgg atgtcgcgac
      841 caaagtccgc cgacagacga gcgagatact cacggtcaac cttgattccg cggcgctcca
      901 tgcgcgcgat gaccggtact aaaggcttgt caacgcgctc atagacacgc gcagctcctt
      961 ccccggaaat gcgcggcttc agcctcagcc aaagccggag agcaatgtcg gcatcttccg
     1021 ccgcatattc tgttgcggca tcaagcggca ccttgtcgaa cgtgatctgc ttggcgccgc
     1081 tgccgcacaa ctgcttgaac gagatgcact cgtgatcaaa gtgcagcttg gcgagctcgt
     1141 cgaggccgtg cccgaaggag cggcccgcat caaggtcaaa gctcatgatc atcgtgtcgt
     1201 cgagcggcgc tacctcgatt ccggcctttt cgaacattac ccagtcatat ttgacattgt
     1261 ggccgatttt cagaaccgaa gggtcttcga gcagcggctt gagcttcgag agcacgagct
     1321 cgagcggcaa ttgactggga gcatccgagt aaaggtctgc gccgctatgg ccgacaggga
     1381 tgtaatatgc cctgtttggc gctgttgcga tgctgacgcc cgcaaatttt gcaacgatgc
     1441 agtcaaggca atccgtttcc gtgtcgattg caacgaagcc gctcgagcgc gcctcttcaa
     1501 tcagacgatc gagcgcattt tcgtcgatga ccgtctcgta cttggatcgg tcaacgtcga
     1561 tttgctcggc tggcgcaggc ccgctcggct tccgctcgag cgaggccatg acgtcattga
     1621 tcccgccgcc gctactgctc cgcccttgag cgggtctcgt gccgttgagc cggttgagca
     1681 gggacttgaa gccctggtcc tcgaggaact cccgcagcgg ttccggggga atgcccttca
     1741 tcagcagcgc gtcgagcggt tctggaagct tggcatcgca gaccagccgc acaagctctc
     1801 gcgagagtcg cgccgactgc gcatgatcaa tcaatgactg tttgagctta ggcttcgaga
     1861 tatggtccgt gcttgcaaga acggtctcaa gatcgccaaa ttgttggatc agttggcttg
     1921 ccgtctttgg gccaattccc ggtacaccgg ggacattatc gacgctgtcg cccatcaggg
     1981 cgaggacgtc cccgactttt tccggcggga ccccgaattt ctccagtacc tccgcacgcc
     2041 cgattcgccg gtcattcatc gtatcgagca tgtcgatgcc ggcatcttcg tcgatcagct
     2101 gcatcagatc cttgtcggag ctgacgatcg tgactttcca gcctgcctcg cgcgcagcgg
     2161 ttacgtagca ggcgatgatg tcgtctgcct caaggcccgc ctcctcgatg catggtatcg
     2221 agaaggcgcg tgttgcgacg cggattagcg gaaactgagg aacgaggtct tcaggcggcg
     2281 gtggccgatg cgccttgtat tgatcgtaca tttcgttccg atgcgtgtgc tccgacgcat
     2341 cgaggacgac tgccatgtga gtcgggccat ctgctcgcgt cagtccgtcg gcgagcttcc
     2401 agagcatggt cgtgtagcca taaaccgcgc cagcaggcgc gccgtgtcga ttggtcaagg
     2461 gcggaagccg gtggtacgcg cgaaagatgt agctcgatcc gtcgactagg tagaggtggg
     2521 gacgagcaga tgggtcggct tcggacatga atggggacgg tttagcaggg tgacggagct
     2581 atggaagctc ttgcaaggca gcaacccata tgggttgtga tcgcgcgcca gccaagtctc
     2641 tctgttcctg tcccgctcgc cacctaaaag ttcgaacagc gcgagctcgg cagtgggtcg
     2701 cgcctcgaag tcatctatcc caacggaatt caagcagtcg cagtgctgct gtgatgctgt
     2761 tctaaaatgc ttctcgtcag gatcgaggaa ttctacggga ttaggatcgt atcctttggt
     2821 tcactgagca tccccggata atcgagtgtg aagtgaaggc cacgactttc gtgacggcta
     2881 agcgcgcttc gaattacgag gtctgcgacc tcaacgagat ttcggagctc gatcaagtcg
     2941 ggggtcaccc ggaagtgtcc gtagtaatca gtgacttcct gccgaagcat gtcgattcgg
     3001 tgcttggcgc gttccagtcg cttcgttgtt cggactatcc cgacatagtt ccacatgaag
     3061 cgacgaatct caccccaggt ttgagcaat
//
LOCUS       DASRBJ010000187         3636 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_120692,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000187 DASRBJ010000000
VERSION     DASRBJ010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3636
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120692"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..329)
                     /locus_tag="VE968_05215"
     CDS             complement(<1..329)
                     /locus_tag="VE968_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU N-terminal domain-containing protein"
                     /protein_id="HZU51260.1"
                     /translation="MLIRTEQTPNPATRKFLPGQTVLETGTRDFADSETAEASPLAKA
                     LFDCGLVEGVFYGRDFISVTALPGVSWTDLEPLVLEILLDHFVSGAPLFKAGSAAEIH
                     VTADTDF"
     gene            complement(361..1059)
                     /locus_tag="VE968_05220"
     CDS             complement(361..1059)
                     /locus_tag="VE968_05220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007680375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HZU51261.1"
                     /translation="MPRQISCGDAPLSVEGGRSQLVWDLPVRLFHWLLAALIVFSWWS
                     VHHHHTDWHIWSGCAILTLLIFRILWGFFGSSTSRFTGFVRGPRAVGAYLRGEWFGIG
                     HNPLGALSVLALLAAVAVQVALGLVAQDEDGIYMGPLARLVTSDQSDKARALHSAWFN
                     VLLGLIVLHLAAIAFYKVRGIGLTRAMISGKTDLGANLPPMRAGKWWAALICLAIAIA
                     ITRWVIAGAPHVAS"
     gene            complement(1023..1577)
                     /locus_tag="VE968_05225"
     CDS             complement(1023..1577)
                     /locus_tag="VE968_05225"
                     /inference="COORDINATES: protein motif:HMM:NF013487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HZU51262.1"
                     /translation="MRAVLFALALPLVSIAACSGSQTSQIHNGQANVSTDSRSAENAT
                     GSNLELRLSLGDATRIMHERHEGMETIGKNAKAINRELAGPSPDLAVVRGGAAQIAEL
                     STKASGWFPEGTGPEAGKTGAKPDIWQNRADFETKLHNFQGAAAAFDAAAKSGDVPRI
                     KARFAELGGACKACHDKYRAEMHH"
     gene            complement(1586..2488)
                     /gene="mmsB"
                     /locus_tag="VE968_05230"
     CDS             complement(1586..2488)
                     /gene="mmsB"
                     /locus_tag="VE968_05230"
                     /EC_number="1.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008442 - 3-hydroxyisobutyrate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006574 - valine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyisobutyrate dehydrogenase"
                     /protein_id="HZU51263.1"
                     /translation="MARIGFIGLGHMGGGMAPNLVKAGHEVVAFDLVTEAIERAAEAG
                     CKPAQSAAQAVRDADVVITMLPAAKHVRSVYHDDIAPNAKEGTLLLDCSTIDVQSTLE
                     VGEGLDELGFEFLDAPVSGGIAAAAGGSLTFMVGGSNAGFERARPILEPMGKAVIHAG
                     RLGSGQAAKICNNMILGATMASTCEAFVLAQKLGLDPKVFFEISSKASGQSWSMTSYC
                     PVPGVGPETPADRDYEGGFAAALMLKDLKLATEAAQQVGAYTPMGAEAEELYQRFVDE
                     GGGNKDFSAIIKMIDDSWKPANQQ"
     gene            complement(2491..3267)
                     /locus_tag="VE968_05235"
     CDS             complement(2491..3267)
                     /locus_tag="VE968_05235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HZU51264.1"
                     /translation="MSGYKTLLVDRHGAATLVKLNRPEALNALNSEVLSELIQLFSAY
                     DRDDSQRCLVLTGSEKAFAAGADIKEMSNQGFAEMYSADFFGGWERVTATRKPWLSAV
                     AGYALGGGCELAMMADFIIAADNAKFGQPEIKLGVTPGMGGSQRLTLAVGKAKAMEMC
                     LTGRMMSADEAERSGLVAKVVPAGQLLDEAMKTAEMIAGMPPLAAVAVKEMVNAAFEM
                     NLTQGIRFERRLFHGLFGTEDQKEGMAAFVDKRAGQWKGR"
     gene            complement(3264..>3636)
                     /locus_tag="VE968_05240"
     CDS             complement(3264..>3636)
                     /locus_tag="VE968_05240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003860 - 3-hydroxyisobutyryl-CoA
                     hydrolase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HZU51265.1"
                     /translation="FASERLEDILAALEADGSDWAQTELATLRSKSPLSCKVSLRLMA
                     QGAKRASFADEMRAEYALAGRVVRTHDFREGVRAVLIDKTGDPQWDPRTPEEVTDEML
                     DVLFAPLPETEAWTPFPETQG"
BASE COUNT          695 a         1142 c         1072 g          727 t
ORIGIN      
        1 tcgaagtcag tgtcagccgt gacatggatc tcggccgcgg aacccgcttt gaacagcggg
       61 gcgccgctga cgaaatggtc gagcaagatc tccaggacaa gcggctcgag atccgtccat
      121 gaaacacctg gcaaggccgt aaccgagatg aagtcgcggc cgtaaaatac accctcgacc
      181 aagccgcagt cgaagagcgc ctttgcaaga ggagacgcct cggctgtctc gctgtccgcg
      241 aaatccctcg tgccggtttc aagaacggtc tgccccggga ggaacttgcg cgttgcagga
      301 ttgggcgttt gctcggtacg gatcagcatc agcgggatgt ggcgctgcga gcggtcgcaa
      361 tcaagaagca acgtgcggcg cgcccgcaat gacccagcga gtaattgcga ttgcgatcgc
      421 gagacaaatc agcgccgccc accatttgcc ggcgcgcatc ggtggtaagt tggcgccaag
      481 gtccgttttc ccgctaatca tcgctcgtgt aagaccgatc ccgcgcacct tgtagaaagc
      541 gatcgctgcg aggtggagca cgatcaaacc caagaggacg ttgaaccacg ccgaatggag
      601 cgcccgagcc ttgtcggatt ggtccgacgt tacaagcctt gcgagtggcc ccatgtaaat
      661 cccgtcctcg tcctgcgcga cgagccccag tgcgacctga accgcgactg cggccaggag
      721 cgcgaggaca ctaagagcac ccagtggatt gtggccgatc ccgaaccatt cgccgcgcaa
      781 ataggcacct accgcgcggg gtcctcggac gaagcctgtg aacctagacg tcgagcttcc
      841 gaaaaatccc cagaggatcc ggaagatgag gagagtaaga atcgcgcagc ctgaccaaat
      901 atgccagtcg gtatgatggt gatggacact ccaccagctg aacacgatca gcgcggcaag
      961 tagccaatga aacaggcgaa ccgggaggtc ccagacgagc tgggatcgcc caccctcgac
     1021 gctcagtggt gcatctccgc acgatatttg tcgtggcacg ccttgcatgc cccgccaagc
     1081 tcggcaaacc gcgccttgat ccggggcaca tcgccgctct tcgccgcggc atcgaacgcg
     1141 gctgcggctc cctggaagtt gtgcaacttc gtctcgaagt cagcgcgatt ctgccagatg
     1201 tccggcttgg caccggtctt acccgcttcc ggaccggttc cttcggggaa ccatccagac
     1261 gccttcgtcg acaattcggc aatctgcgct gctccgccgc gaacgaccgc aaggtcggga
     1321 gacggacctg cgagctcgcg attgatcgcc ttcgcgttct tcccgattgt ttccatcccc
     1381 tcgtgacgct catgcatgat ccgcgtcgcg tcgccgagcg acagccgcag ctcgagattg
     1441 gatcccgtcg cattttctgc gctccgcgag tcggtgctga cattcgcttg gccgttgtgg
     1501 atctggcttg tctgggaacc actgcacgca gcgattgaaa cgaggggaag ggcaagggcg
     1561 aacagaacgg cacgcataag ctctcctatt gttggttggc cggtttccag ctgtcgtcga
     1621 tcatcttgat gattgccgag aaatccttgt ttccaccacc ctcgtcaaca aaccgttggt
     1681 aaagttcctc ggcttctgcg cccatcgggg tataggcgcc gacttgctgt gcggcctcgg
     1741 tagcgagttt caggtcctta agcatcagcg cggcagcgaa gccgccttca tagtcccggt
     1801 ctgccggggt ttcgggcccg acgcccggca ccgggcagta gctcgtcatt gaccagcttt
     1861 ggcccgaggc cttggatgag atctcaaaga agaccttggg gtcgagcccg agcttctgcg
     1921 ccaagacaaa cgcctcgcag gttgacgcca tggtcgcacc gaggatcata ttgttacaga
     1981 tcttcgctgc ttggccggag cccaggcgcc ccgcgtgtat gacggctttg cccatgggct
     2041 ctaaaattgg ccgcgcgcgt tcgaagcctg cgttgctgcc accgaccatg aacgtcaacg
     2101 agccacctgc ggccgctgca ataccacccg agaccggagc gtccaggaat tcaaatccaa
     2161 gctcgtcaag gccctcaccg acttcgaggg tgctctgtac gtcaatcgtt gaacagtcga
     2221 ggagcagcgt accttcctta gcattgggcg cgatgtcgtc gtggtacacg ctgcgcacgt
     2281 gctttgcggc aggcaacatc gtgatcacga cgtcggcgtc tcgcaccgcc tgagccgccg
     2341 attgagcggg cttgcagccc gcctcggcgg cgcgctcaat ggcttcggta acgaggtcaa
     2401 aggcaacgac ctcgtggccg gccttgacga ggttgggcgc cattccacca cccatgtgtc
     2461 cgaggccgat aaaaccgatt cgcgccatgc tcagcgtccc ttccattggc cggcgcgctt
     2521 gtcgacgaac gcggccatgc cctccttttg atcttcggtg ccaaacagcc cgtggaacag
     2581 ccgccgctcg aaacgaatgc cctgggtaag gttcatttcg aatgccgcat tgaccatttc
     2641 cttgaccgca actgcagcga ggggtggcat gcccgcgatc atctcggccg tcttcattgc
     2701 ttcatcgaga agttgcccgg ccgggacaac tttggcgacg agccctgatc gctcggcttc
     2761 atcagcactc atcatgcgcc ccgtaagaca catttccatc gcctttgcct tgcccacggc
     2821 caaggtcagt cgttgcgagc cgcccatgcc cggcgtcacc ccaagcttga tctcgggttg
     2881 gccaaatttt gcgttgtcgg ctgcaatgat gaaatcggcc atcattgcga gttcgcatcc
     2941 gccgccgagg gcataaccgg cgactgcgga gagccagggc ttgcgtgtcg cggtgactcg
     3001 ttcccagcct ccgaagaaat ccgccgaata catttcggca aatccttggt tcgacatttc
     3061 cttgatgtcc gcgcctgccg caaatgcctt ctcggatcca gtaaggacaa ggcagcgctg
     3121 gctatcgtcg cggtcatagg ctgaaaacag ctggatgagt tcgctaagca cctcgctgtt
     3181 gagggcgttc agtgcttccg gtcggttcaa tttgactagt gttgcggcgc cgtgccggtc
     3241 gaccagcaat gtcttgtatc cgctcatcct tgagtctccg ggaagggtgt ccaggcctcg
     3301 gtttccggca ggggggcaaa gagcacgtcg agcatttcgt ccgtgacttc ctccggcgtc
     3361 cttgggtccc actgaggatc gccggttttg tcgatcagca ccgcgcgcac gccctcgcga
     3421 aaatcatggg ttcggacgac acgtccggcc agcgcatact cggcgcgcat ctcgtcggcg
     3481 aagctggcgc gcttcgctcc ctgtgccatt agccgaagcg ataccttgca cgacaaggga
     3541 ctctttgacc ggagggttgc gagttcggtc tgcgcccagt cgcttccatc cgcttcgagc
     3601 gcggccagta tgtcctcgag acgttcggat gcgaag
//
LOCUS       DASRBJ010000188         2748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_77041,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000188 DASRBJ010000000
VERSION     DASRBJ010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2748
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77041"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..886)
                     /locus_tag="VE968_05245"
     CDS             complement(<1..886)
                     /locus_tag="VE968_05245"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HZU51266.1"
                     /translation="MTGSSKDRRDDEEARFVRRVLVTLAIGGGALLLWQLRPVLVLLF
                     GAILIATIFRAIAAPLQSHLRLPERLAVALSVILIVLLVGGTIALIGTQVSKQSQVLA
                     TILPHAAQIVDQRLSSMGLGNPVEQWIGKLHSGSIAGPNISSFVSTATMSVASFLIVF
                     FGGIFIATQPRLYGIGFIKLIPSAKRSVVADAMDDSGRALRLWLKGQLWAMIIIFALT
                     WLGLFLIGVPSALVLALISGVLEFIPYAGAITSSLPAILVGLAQSPHTALWVVGLYVV
                     VHHVEAYVIQPVIQQFAVE"
     gene            complement(927..1706)
                     /locus_tag="VE968_05250"
     CDS             complement(927..1706)
                     /locus_tag="VE968_05250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HZU51267.1"
                     /translation="MSSRKLAIVTGASSGIGLEIAKLAAKDGYDLIVAADTPFVEAAP
                     ALKDLGAEVREIEADLSTKQGVDQLLSAVGDRPVDVLVANAGHGLGHGFLDQAPDEWL
                     HVINTDITGTLMLIQPIVQRMVERGEGKVLITGSIAGHMAGAFQAVYNGSKAFIDSFA
                     AALNEEIKDSGVTVTCLKPGATETNFFHRAELDDTKIGQAKKDDPSDVAKAGWDAMLK
                     GEPSVIYGLKNKMQVAGAAMMTDATTAKLHRAQAEPGSGNS"
     gene            complement(1693..>2748)
                     /locus_tag="VE968_05255"
     CDS             complement(1693..>2748)
                     /locus_tag="VE968_05255"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010546231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004024 - alcohol dehydrogenase activity,
                     zinc-dependent [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase"
                     /protein_id="HZU51268.1"
                     /translation="DILGHEFMGEVVEAGPESSLDKGQRVVVPFPIACGQCFFCKKQQ
                     YSCCDNTNPPETSDATETMYGYPMAGVFGYSHLTGGYAGGQAEYVRVPFSNVGPIVVP
                     DHLSDDQVLFLSDILPTGWMAAENCEIEPGDTVAVWGCGPVGLFAIQSALVMGAHRVI
                     AIDHYKTRLDLAKKLGAEILDYREVDVREALAEMTGGIGPDAVIDAVGLEAHGISIDN
                     IADQVKSMAFLVTDRAHAFREAVLSVRKGGRVSVPGVYGGFADKFPVGAFMEKGLTMK
                     TGQTHVQRYLKPLLGLIEEGKIDTTFLISHHAPLEQAPEMYKHWHDDQDQYTKIVLKP
                     EMATPRQEQKEQQHELA"
BASE COUNT          554 a          829 c          823 g          542 t
ORIGIN      
        1 tctcgactgc aaactgctgg atcaccggct gtattacata ggcttcgacg tggtggacga
       61 cgacatagag tccaaccacc caaagcgccg tgtgcgggct ttgcgcaaga ccaacgagga
      121 tcgcgggcag cgatgacgtg attgcaccgg catagggaat gaactcaagg accccggaaa
      181 tgagcgcgag gaccagcgct gaaggaacgc cgatcaggaa aagcccgagc caggtcagcg
      241 caaagatgat gatcatcgcc cagagctgtc ccttgagcca cagcctcagt gcccgtccgc
      301 tgtcatccat cgcatccgcg acaaccgagc gcttggctga cggtatgagc ttgatgaagc
      361 cgatgccgta aaggcgaggc tgggtcgcga tgaagatccc gccgaaaaag acaatgagga
      421 agcttgcgac actcatcgtc gcggtcgaaa cgaagctcga gatgttgggc ccggcaatgc
      481 tgcccgaatg gagtttgcca atccattgtt cgacagggtt gccaagaccc atggacgaaa
      541 gccgttgatc gacgatctgc gccgcgtgcg gaagaatagt ggcaagcacc tggctctgtt
      601 ttgaaacctg cgtgccgatc agcgctatgg tgccaccgac gagcaggacg atgagaatca
      661 ccgataaagc gacagcgagc ctttcgggta agcgcagatg gctttgaagc ggcgccgcaa
      721 ttgcgcggaa aatcgtggca atgaggattg cgccaaacag cagcacgagg acggggcgca
      781 attgccacag gagcaatgcg ccgccgccga ttgctagcgt gacgagaacg cggcggacga
      841 accgcgcttc ctcatcatcc ctcctgtctt tcgatgatcc agtcacggac gcgaagcgca
      901 ccgcggccgt gaccgttcca ttctgctcag ctgttgccgc ttcccggctc cgcctgggcc
      961 cggtgaagct tcgccgtggt cgcgtccgtc atcatcgcgg cgccggcgac ctgcattttg
     1021 ttcttaaggc cgtagatcac cgacggttcg cccttcagca tggcgtccca accggccttg
     1081 gcgacatcgc tcggatcgtc cttcttcgct tgtccgatct tcgtgtcgtc gagctccgcc
     1141 cggtggaaga agttggtctc ggtcgcgcct ggcttgagac aggttaccgt aacgccgctg
     1201 tccttgattt cttcgttcag cgccgccgcg aagctgtcaa tgaacgcttt cgagccattg
     1261 tacacggcct ggaacgcgcc ggccatgtga ccggcgatcg aaccggttat cagcaccttg
     1321 ccctcgccgc gttcgaccat gcgctgcacg atcggctgga tcagcatcaa cgtgccggta
     1381 atgtcggtat tgatgacgtg cagccattca tccggcgcct gatcaagaaa gccatggccg
     1441 aggccatggc ccgcattggc aacaagtacg tcgactggtc gatcgccgac ggctgagagc
     1501 agttggtcga cgccctgctt tgttgaaaga tctgcctcta tctcgcgaac ctcggcacca
     1561 agatccttga gcgccggtgc tgcctcgacg aacggtgtat ccgccgcaac gatgaggtcg
     1621 tagccgtcct ttgcggcgag tttggcgatc tcgaggccga tcccgctcga tgcaccggtg
     1681 acaatcgcaa gtttacgcga gctcatgctg ctgctccttc tgttcctgcc tgggggtcgc
     1741 catttcgggt ttcaaaacaa tcttggtgta ctggtcctgg tcgtcgtgcc agtgcttgta
     1801 catctcgggc gcctgttcga gcggcgcatg atgcgagatg aggaaggtgg tgtcgatctt
     1861 cccttcctcg atgaggccga ggagcggctt cagatagcgc tgaacgtggg tttggcccgt
     1921 cttcatggtc aaaccctttt ccatgaaggc gccgaccggg aacttgtcgg caaagccacc
     1981 atagacgccc ggtaccgaca cccggcctcc cttgcgcacg gagagcaccg cttcacggaa
     2041 ggcgtgcgca cgatcggtca cgaggaacgc catgcttttc acctggtcgg caatattgtc
     2101 gatcgagatg ccatgcgcct cgagaccgac ggcatcgatc acggcgtcgg gaccgatgcc
     2161 accggtcatc tcggccagtg cctcgcgcac gtcgacttcg cgataatcga ggatctcggc
     2221 gccaagcttc ttcgcaagat caagccgtgt cttgtagtga tcgatcgcaa tcacccgatg
     2281 cgcgcccatc acaagcgcgg actggattgc aaacaacccg actggaccac aaccccagac
     2341 agcgaccgtg tcaccaggtt cgatctcgca attttccgct gccatccagc cggttggcag
     2401 aatgtcgctg agaaagagga cttggtcgtc gctgagatga tcgggaacaa cgatcgggcc
     2461 gacgttcgag aagggaacgc ggacatattc cgcctggccg ccggcgtagc caccagtcag
     2521 gtgcgaatag ccgaacacgc cggccatcgg gtagccgtac atggtctcgg ttgcgtccga
     2581 ggtctcgggc gggttggtat tgtcgcagca gctgtactgc tgcttcttgc agaaaaagca
     2641 ttgcccgcag gcaattggaa acgggacgac cacgcgctgg cccttgtcga gcgagctttc
     2701 gggaccggct tccacgactt cacccatgaa ctcgtggccg aggatgtc
//
LOCUS       DASRBJ010000189         7397 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_18460,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000189 DASRBJ010000000
VERSION     DASRBJ010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7397
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18460"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..1088)
                     /gene="virB11"
                     /locus_tag="VE968_05260"
     CDS             complement(66..1088)
                     /gene="virB11"
                     /locus_tag="VE968_05260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006833364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043684 - type IV secretion system
                     complex [Evidence IEA];
                     GO_process: GO:0044097 - secretion by the type IV
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-type DNA transfer ATPase VirB11"
                     /protein_id="HZU51269.1"
                     /translation="MNEPEQLAVADAVDPFLDAYLEPFRAWLSQPDVTEILVNTPGEA
                     WVEQRGHMTCHKADKIDNALLQRLAEQVARVSNQGINRERPLLAAMLPNGARVQFVAP
                     TATRGDWALAIRRHCLLDMPLDAYASGPLQPQRKTAPISPNDDPIAFLRQAVNDRKTI
                     LISGGTSSGKTTFLNALLREVPIEERVIVVEDTAEVQLHGPNDLGLIAVKGELGEALI
                     NTDDLLQAALRLRPDRILLGELRGKEAVSFLRAVNTGHPGSFSTIHANSTSGALEQLA
                     LMVMQSGLGLSRSETIDYARSVIDVVVQLGREGAQRKITAIEQLSPESTAAELTIRQI
                     LNRVAA"
     gene            complement(1085..2266)
                     /locus_tag="VE968_05265"
     CDS             complement(1085..2266)
                     /locus_tag="VE968_05265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006833363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbI/VirB10 family protein"
                     /protein_id="HZU51270.1"
                     /translation="MADKTVVIDAPSNTIRGPWEDHGRSTLPAPVPQTDPRLELSEQA
                     LVVANTNAFPIVARQKSRRDNLGLAAGGAIALMLGCATFLSLSSGRHAPAAVGSGTGT
                     TLAPQARPGMPMAAPVPGRPLAVPPAAVPGQPQPTPMAGLAHAPAMTTMPVSPPGGAP
                     VLVYDGSSAPMTTVTAGPNSPRTAEGAPAMLAGAMPGGSAIGDNNAVHATKLAEPANT
                     VVQGTLIPAVLETAIDTDIPGYARAVVSQDVRSFDGSRVLIPRSSRLIGEYKGVTQAG
                     QRRAFLMWTRLVLPDGVSIALASPSADFSGQAGIGGQVNSHFLSRFGSSILLSILGGA
                     GSLFTGGTSTVVVSGGQSAASVAAQHDGNRAPTIKVQQGQPIRVFTARDLIFSDEGAN
                     G"
     gene            complement(2256..3203)
                     /locus_tag="VE968_05270"
     CDS             complement(2256..3203)
                     /locus_tag="VE968_05270"
                     /inference="COORDINATES: protein motif:HMM:NF015487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbG/VirB9 family P-type conjugative transfer
                     protein"
                     /protein_id="HZU51271.1"
                     /translation="MIRKFSFVALALFSGTSAIAATDGRIRTLAYSPDQIVRIVGKPG
                     IQSTIEFAPDERIENVAVGDSSAWQITPNHRASLLFVKPLVARSRTNMTVVTDRRTYM
                     FDLVAEGKSVAAVYALKFSYPHDKIVEEPAPVTKQVVAAAAPVEQQPAPATLTADKLH
                     FDWKSKGTGKLVPTKVFDDGTSLYLMWGKDSPLPAILTESEDRKEGPVNYRMSGEYIV
                     INPIPSNLVLRYGSKFAMLWPTHPIEAPARATSNAFEGRIAAAPRQVPVPTEQPTAKP
                     APEAAAQGSTVGSSRSDAVRLANMTSLYNDKLTDNQNGR"
     gene            complement(3200..4402)
                     /locus_tag="VE968_05275"
     CDS             complement(3200..4402)
                     /locus_tag="VE968_05275"
                     /inference="COORDINATES: protein motif:HMM:NF016491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HZU51272.1"
                     /translation="MSQCTPFGSEGPQGVADALGKIDCLATDATSVSFGRLFGAHGSF
                     QTALSIILTLYIALLAFNLLTGRSALRISVLTPRMMTLGLVLTFATSWVAYQSVVWNL
                     ATGAPDEIASVLVGTKGSATVAFAQHLDGFFNAVTDAAAASQPNPSTVAANPAAIAAA
                     TGVTSAANILSIGALIMLLGTVGVLVVCRLALAALLIIGPVFIVLALFEGTRGLFEGW
                     LKSVVMFALIPLLTVVMGSGALVAIGPMVAGLDQGGAAVPLRTAVSILVASIIYASLM
                     LLVIKVAANLTRGWRFGRSPSFVPATAATGFSPALQERSTIVNGAHGAQVSSAVSSDR
                     VRSTVASLETVSATQRIAAPVVPRLAMPATVPQLNTAGPSDARGQLRYLHHRVSGAPT
                     NVSREMLR"
     gene            complement(4399..6798)
                     /locus_tag="VE968_05280"
     CDS             complement(4399..6798)
                     /locus_tag="VE968_05280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010414369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB4 family type IV secretion/conjugal transfer
                     ATPase"
                     /protein_id="HZU51273.1"
                     /translation="MTKWFGPAAWGKKEVKAGDRLPYACHLDSTTLRMRDGSLMRSMR
                     LAGFPFETEDDDVLNHMLAVRDVVLRSALNSKVVLYHHLIRRRVQVDLAAQTPDAFSA
                     DIDRRWSAQLNQGRLFLNEQFLTIVVRPPRGKAGIPERLSKIGSKPARSLSGAEALEL
                     DAATAALTAALQAYGVRVLGTYENETGIYSEPLELLSAIYNGEMRPVLLPRAEQDLGQ
                     HIPYSRVSFGLDAIEVRGPASRSFASILGIKEYPDASRAGLLDSLLRVPHEIVITESF
                     APIERQTARERIDLSLRRLKSADEGAATERAEMLAARDAVGAGQLSFGDHHLSLLVRS
                     GSLETLESATADAAAALADIGAVAVREDINLEPAFWGQFPGNEQYVVRRALVSSANAA
                     GFISLHGFPMGRARGNYWGEAVSVFETTSSTPYFFNFHEGDLGNFTIIGPSGSGKTVV
                     LNFLTAQAQKFSPRTILFDKDRGSEIFLRALGGRYERVARGAATGFNPLRLPDNAVNR
                     AFLRDWLSNILEANGADEEAVIAKAVDEIFEHGPELRRLRFLRDLLAGGRRPQAGDLP
                     SRLDPWILEGEHAWLFDNRDDQLDFSNRILGFDMTELLEDRKLRTPVLLYLFHRIEQR
                     LDGSPTMILIDEAWKALDDPMFAARIRNWMKTLRKRNAMIGFATQSAADALDSSISSA
                     IVEQTATAIFMPNNKAREEHYCKGFGLSAQEFEFIRSLPAHSRCFLVRQSNRSVVVRL
                     DLGGMPDVLTVLSGRESNVRRLDEIRASVGDDPAHWYPMLTRSPWPGGTGDDYWLEAA
                     E"
     gene            complement(6816..7097)
                     /locus_tag="VE968_05285"
     CDS             complement(6816..7097)
                     /locus_tag="VE968_05285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007688232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein VirB3"
                     /protein_id="HZU51274.1"
                     /translation="MPLSRSPVFRALTRPQMFAGVTYSYFIINAAVTTEAFLITHSFL
                     ALPVALAVHVIGYFACLREPRIFDLWLTKVSRCPRVRNWKHWGCNSYAP"
     gene            complement(7102..7392)
                     /locus_tag="VE968_05290"
     CDS             complement(7102..7392)
                     /locus_tag="VE968_05290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017664686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HZU51275.1"
                     /translation="MAAFSLFLASAPAAAATAVNPQGSGPIVSALMWLQGTLLGNVAT
                     AVAVIAVAMVGFMMLTGRMNWRFGATVIIGCFILFGSAAIVSGIQASAAAAG"
BASE COUNT         1528 a         2208 c         2303 g         1358 t
ORIGIN      
        1 ctgctagacc gatttatcct ggcatccgga attcgaacct gcgcgaagcg aacgccagct
       61 tcgcgttatg ccgcaacgcg attcaggatt tgccggatcg tcaactcggc tgccgttgac
      121 tcaggtgaaa gttgctcaat cgcggtaatc ttgcgctgag cgccttccct gccaagctgc
      181 acaacgacat cgatgaccga acgagcgtaa tcgatcgtct cgctgcgcga gagtcccagg
      241 cccgattgca tgaccatcag cgcgagctgc tcgagcgccc cgctcgtcga gttcgcgtgg
      301 atcgtgctga atgacccggg atggccggta ttcacagcgc gcagaaagct gacggcctct
      361 ttgccacgaa gctcacccaa aaggatgcga tcgggcctta gccgaagcgc cgcctgaagg
      421 aggtcgtcgg tgttgatcag agcctcccct agttcgcctt taacggcgat gaggccaagg
      481 tcattcggcc cgtgcaactg gacttcagcc gtatcctcaa cgacgattac tcgctcctcg
      541 attggcactt cgcgcaacaa agcgttgagg aaagtggtct tgccgctcga cgtaccgcca
      601 ctgatcagga tcgtctttcg gtcgttcacg gcctggcgaa ggaatgcaat tgggtcatcg
      661 ttgggcgaga tcggagctgt cttgcgctgc ggttgcagcg gtccgctcgc ataagcatcg
      721 agcggcatat caagcagaca atgacgccga atggctaatg cccaatcgcc gcgcgttgcg
      781 gttggagcca cgaattggac gcgcgctcca tttggcagca tcgctgcgag aagtggccgc
      841 tcgcggttga tgccctggtt gctgacacgc gctacctgct cggcaagccg ctgcaacagg
      901 gcattatcga tcttgtctgc cttgtggcag gtcatatgtc cgcgctgttc gacccacgct
      961 tcaccaggag tattcacgag gatctcggtc acgtccggct gtgacaacca cgcgcggaac
     1021 ggttcgagat aggcgtcgag aaatgggtct acggcgtccg caaccgcgag ctgttccggt
     1081 tcattcaccc gttcgcgcct tcatccgaga agatgagatc ccgtgccgtg aaaacgcgga
     1141 tcggctggcc ctgctggacc ttgatcgtcg gtgcgcggtt gccgtcatgc tgtgcagcaa
     1201 cggatgctgc gctttgaccg ccggacacga caaccgtgga ggtgccgcca gtgaacagcg
     1261 agcctgctcc accaaggatc gacagcaaga tcgacgatcc aaaccgcgaa aggaaatggc
     1321 tgttgacctg accgccgatg ccggcttgac ccgaaaaatc agccgaaggc gatgcgagtg
     1381 cgatggacac gccatcgggc agaacgagcc tcgtccacat gaggaaagcg cgacgctgtc
     1441 ccgcttgagt gacgccctta tactcgccga tcaggcgaga agaacgaggg atcagcacac
     1501 ggcttccatc aaatgagcga acgtcctggc tgacgacggc gcgggcatag cccggaatat
     1561 cggtgtcgat tgccgtctca agcaccgccg gaataagcgt cccttgtacg acggtattcg
     1621 ccggctccgc gagctttgtt gcatggaccg cattgttatc gccaatcgcg cttccccccg
     1681 gcattgcgcc agcgagcatc gcgggcgcgc cctctgcggt acgggggctg ttgggacccg
     1741 cggtgacggt cgtcatcggc gctgagctgc catcatagac caagaccggg gcaccgcccg
     1801 gggggctcac cggcatcgtc gtcatggcgg gcgcatgcgc aaggccggcc atcggcgtcg
     1861 gttgcggctg accaggaaca gccgcggggg gtactgccaa gggtcttcca ggaactggtg
     1921 cagccattgg catccccggt cgagcttggg gagcaagcgt agtgcccgtt ccgctgccga
     1981 ccgctgcagg cgcgtgtcta cccgagctta acgacaggaa cgtcgcgcag ccaagcatca
     2041 gtgcaatcgc tccgccagcc gccagaccaa gattgtcgcg ccggcttttc tgtcgggcta
     2101 cgattggaaa ggcattggtg ttcgcaacaa caagcgcctg ctcactaagt tcgagacgcg
     2161 ggtcagtctg cggaactggt gcgggaagtg tcgagcggcc gtgatcctcc cagggaccac
     2221 ggatcgtgtt cgacggcgcg tcgatgacga ctgttttatc ggccattttg gttgtccgtg
     2281 agcttgtcgt tgtaaagcga agtcatgttc gcgagtctga ccgcgtcaga gcggctcgaa
     2341 cctacggtgc tgccttgcgc cgccgcttcg ggtgcaggct ttgctgtcgg ttgctccgtt
     2401 gggaccggca cctgcctcgg agcagcggcg atccttcctt cgaaggcatt ggacgtcgcg
     2461 cgcgccggtg cttcgatcgg gtgcgttggc caaagcatgg caaatttgct cccgtagcga
     2521 aggacgagat tcgacgggat cggattgata acgatatact ccccgctcat gcggtaattg
     2581 acaggacctt ccttgcggtc ctcggattcc gtgaggatcg ccggaagcgg gctgtccttg
     2641 ccccacataa gatagagcga cgtaccgtcg tcgaagacct tcgtcggcac gagctttccg
     2701 gtgccttttg atttccaatc aaagtgaagc ttgtcggcag tgagcgtcgc cggcgccggc
     2761 tgctgctcta ccggagccgc cgcggcaaca acctgcttgg tgaccggagc tggttcctcg
     2821 acaatcttgt cgtgcggata gctgaacttg agcgcataga cggccgcgac cgatttcccc
     2881 tccgcgacca agtcgaacat gtacgtccga cggtcagtca cgacggtcat gttcgtgcga
     2941 cttcgggcaa cgagcggctt tacaaagagc aggcttgcgc gatggttcgg cgtgatctgc
     3001 caggcggaag aatcgccgac ggcgacattc tcgatgcgct catcgggagc gaattcgatc
     3061 gtcgactgga tacccggctt tccgacaatt cggacgatct ggtctggact ataggcaagc
     3121 gtccggatcc gtccgtccgt cgccgcaatc gcactcgtgc cgctaaaaag cgccagcgca
     3181 acaaaactaa acttgcgaat catcgcagca tctctcgcga aacattggtt ggagcaccgg
     3241 acacccggtg atgaagataa cggagttgcc cgcgcgcatc gctcggaccc gctgtgttga
     3301 gctggggtac cgtcgcgggc attgcaagcc gcggcacgac aggagccgct attcgctggg
     3361 ttgcggaaac cgtctcaagg cttgcaaccg tactcctcac ccgatcggaa gaaacagcgc
     3421 tcgagacttg cgccccgtgc gcgccgttga cgatcgtgga tcgctcctgg agcgctggcg
     3481 agaagccggt agcggcggtc gcgggcacga aagagggaga cctaccgaag cgccaaccgc
     3541 gcgtcagatt cgcggcgacc ttgatcacca gaagcatcag cgacgcgtag atgatcgacg
     3601 cgacgagaat tgacacagcg gtgcgcaagg gcacggcggc accaccctga tcgaggcctg
     3661 cgaccatggg gccgattgca acaagtgctc cgctacccat gacgacggtc agcaacggga
     3721 taagggcgaa cataaccacg ctcttaagcc agccttcgaa aaggccgcgc gtaccttcga
     3781 acagtgcgag cacgatgaag accgggccga taatgagaag cgcagcaagt gcgagacggc
     3841 agacgacgag aacgccgact gttcccaaga gcatgatgag agcgccgatc gagagaatgt
     3901 tcgctgctga tgtgacgccc gttgcggcgg caatggccgc cgggtttgca gcaacggtcg
     3961 aaggattggg ctgagaagcg gcagcggcat cggtcaccgc gttgaagaac ccatcgagat
     4021 gttgagcaaa agcgaccgtc gccgagcctt tggttccgac cagcacgctt gcgatctcgt
     4081 cgggagcgcc ggttgcaagg ttccagacga ccgactggta cgcgacccag gacgtagcga
     4141 aggtaagaac gagccccaag gtcatcatcc tcggcgtaag caccgatata cgaagcgcgg
     4201 accggcccgt cagaagattg aacgccagca gcgcgatgta gagagtcagg atgatcgaca
     4261 gcgcggtctg gaaactaccg tgggcgccga acagacgccc gaaagagacg ctcgtcgcgt
     4321 ccgttgcgag acagtcgatc ttccccaagg cgtcggcgac gccctgcggg ccctcagaac
     4381 cgaagggcgt gcactggctc attcggcagc ttccagccaa taatcatcgc ccgtgccgcc
     4441 cggccagggt gaacgggtaa gcatcgggta ccaatgggct ggatcgtcgc cgacggacgc
     4501 gcggatctcg tcgagacggc gcacgttgga ctcgcgtcca gagagaaccg tcagcacgtc
     4561 cggcatccca ccaaggtcca gccgcaccac aactgaccgg ttcgattgcc gaacgaggaa
     4621 gcagcggctg tgcgcgggaa ggctgcggat gaactcgaat tcctgcgcgc tgaggccaaa
     4681 gcctttgcaa taatgctctt cccgcgcctt gttgttcggc atgaagatcg ccgttgcggt
     4741 ctgctcgaca atggccgacg agatcgagct gtcgagcgca tcggctgccg actgggtggc
     4801 aaaaccgatc atcgcattgc gcttccgaag ggttttcatc cagttgcgga tgcgtgccgc
     4861 gaacatcggg tcgtcgagcg ccttccaggc ctcgtcgatc aggatcatcg tcggcgagcc
     4921 gtcgagccgc tgctcaatcc ggtgaaacag gtagagcagg acgggcgtgc ggagtttgcg
     4981 gtcttccagc agctcggtca tgtcgaagcc gagaatacga ttggagaaat caagctggtc
     5041 gtcgcgattg tcgaagagcc aagcatgttc cccttctaga atccaagggt cgaggcgcga
     5101 gggaagatcg cccgcttgcg gccgccgccc gccggcaagg agatctctaa gaaagcgaag
     5161 ccgccgaagt tccggtccgt gctcgaagat ctcatcgact gccttggcga ttacggcttc
     5221 ctcgtcggcg ccattcgctt cgagaatgtt cgagagccaa tcgcgcagga aggcgcggtt
     5281 aacggcatta tccggaagtc ggagcggatt gaacccggtc gcagcaccac gcgctactcg
     5341 ttcgtagcga ccgccgagtg ctcgaaggaa aatctcagaa ccacgatcct tgtcgaagag
     5401 gattgttcgg ggtgagaatt tctgggcctg cgcggtgagg aagttgagga cgaccgtctt
     5461 acccgacccc gacgggccga tgatcgtgaa attgccgaga tcgccctcgt gaaaattgaa
     5521 gaaataaggt gttgagctcg tcgtctcgaa cacgctcact gcctcgcccc agtaattgcc
     5581 gcgcgcacgg cccattggaa aaccgtgaag cgagatgaat cccgcggcat tcgcgctcga
     5641 tacaagcgcc cgtcgaacga catattgttc gttgccgggg aactggcccc agaaggctgg
     5701 ctcaaggttg atgtcctcgc gaacggcaac cgcgcctatg tccgcaagcg ctgccgccgc
     5761 gtcggcggtt gcgctttcga gtgtttccag tgaaccgctc cgaaccagca ggctgaggtg
     5821 atgatcgcca aagctcaact ggccggcacc cacggcatcg cgtgccgcaa gcatttcagc
     5881 gcgttcggtt gccgcacctt cgtcggcact cttgaggcgc cgtagagaaa ggtcgatcct
     5941 ttcccgcgcc gtttgacgct cgatcggagc aaagctttcc gtaatgacga tttcgtgcgg
     6001 aacgcgcagg agggagtcga gcaaaccggc gcggctcgca tcgggatatt ccttgatgcc
     6061 aagaatgctc gcgaaactgc ggcttgcggg gcccctcacc tcgatcgcat caagtccgaa
     6121 actgacgcgc gaataaggga tatgctgacc aagatcctgt tcggctcgcg gaagaagaac
     6181 cggacgcatc tcaccattgt aaattgcgga gagaagctcg agcggttccg aatagatgcc
     6241 ggtctcgttc tcgtaggtgc caaggacgcg cacgccataa gcctggagtg ccgcagtaag
     6301 cgcagcggtc gctgcatcaa gttcgagcgc ctcggcaccg ctcagcgatc gagccggctt
     6361 cgacccgatc ttgctgaggc gctccgggat tccagccttc ccgcgtggcg gacggacgac
     6421 gatcgtcagg aactgttcgt tgaggaacag tcgtccctgg ttgagctgcg ctgaccagcg
     6481 gcgatcgatg tccgcggaaa aagcgtctgg tgtctgggca gcaagatcca cctgcacgcg
     6541 tcggcggatg aggtggtggt agagaacgac cttcgagtta agcgcacttc gaagcaccac
     6601 gtcgcgaacc gcgagcatgt ggttcagaac atcgtcgtcc tcggtctcaa agggaaaacc
     6661 ggcaagacgc attgaacgca tgagcgagcc atcgcgcatc cgaagggtcg tgctgtcgag
     6721 gtggcaggca taaggaaggc gatcgccagc cttcacttct ttcttgcccc acgctgccgg
     6781 tccgaaccac ttagtcatag tcgatgcttt catgctcaag gcgcgtagct gttgcagccc
     6841 cagtgcttcc agttgcgcac ccgggggcag cggctgacct tcgtcagcca caggtcgaaa
     6901 atccgcggtt cgcgaaggca ggcaaaatag ccgatcacgt gcacggcaag ggcaacggga
     6961 agtgcaagaa agctgtgcgt gatcaagaag gcttcggtcg tcaccgcggc attgatgatg
     7021 aaataactgt acgtgacgcc cgcaaacatc tgcgggcggg taagagcgcg aaacacgggt
     7081 gacctcgaga gcggcatcag cctagcctgc cgctgccgcg cttgcctgga tgccgctgac
     7141 gatcgcggcc gacccgaaca ggataaagca accgataatc accgttgctc cgaaccgcca
     7201 gttcatccgt ccggtcaaca tcatgaaacc gaccatcgcg accgcgatga ccgcgacggc
     7261 ggtcgcgaca ttgccgagga gcgtgccttg gagccacatg agcgcactta cgattggccc
     7321 ggaaccctgc gggttcacgg ccgtggctgc agctgccggc gcactcgcga gaaatagaga
     7381 aaaagcggca attgcac
//
LOCUS       DASRBJ010000190         3823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_273710,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000190 DASRBJ010000000
VERSION     DASRBJ010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3823
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273710"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(399..560)
                     /locus_tag="VE968_05295"
     CDS             complement(399..560)
                     /locus_tag="VE968_05295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HZU51276.1"
                     /translation="MSKFLKLIKNEKGATAIEYGLIAALIAVAAIGAMQGIGNKLNTT
                     FNNVSNHLG"
     gene            complement(717..1370)
                     /gene="fsa"
                     /locus_tag="VE968_05300"
     CDS             complement(717..1370)
                     /gene="fsa"
                     /locus_tag="VE968_05300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HZU51277.1"
                     /translation="MKFFADTAEINEIRELAETGLLDGVTTNPSLIHKSGRNFLEVAK
                     EIAALVNGPVSAEVVALDYEGMMREAEVLRKLADNIAIKVPLTPAGLKACKALSSDGT
                     MVNVTLCFSAAQALLAAKAGATFISPFVGRHDDVGFDGMALIADIRLIYDNYDFATEI
                     LVASVRHPMHVVEAAKIGADVMTAPPKIIWQLFKHPLTDAGITSFLKDWQSTGQKIA"
     gene            1457..2221
                     /locus_tag="VE968_05305"
     CDS             1457..2221
                     /locus_tag="VE968_05305"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HZU51278.1"
                     /translation="MSEHVRVADNDGCLAISLARPERRNAITSEMYAALADAIEEATG
                     NHRVRVITISGDGQDFTAGNDLADFLEAAPRSSPEIPVWRFLRALARCETPIIAAVHG
                     NCVGIGTTLLLHCDLVLADDTARFSMPFVDLGLVPEAASSLLVPRLAGRRRAARYLLL
                     CESFGPDEALTIGLISHRAQPGELEAELKRLVANLLSKPAEALRQTQKLLRHGARDEV
                     LERMELEGTRFSERLASVEVQQAISAFFQKRGSAAS"
     gene            2341..3567
                     /locus_tag="VE968_05310"
     CDS             2341..3567
                     /locus_tag="VE968_05310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013039288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxic anion resistance protein"
                     /protein_id="HZU51279.1"
                     /translation="MASEPVTQTVAPASSTTKLKLDPPEVLQPVAPADAAGLVPLRSE
                     ETSELDNRVQRFVDELAGLDANSPEFGKKVDQLTAMGRKEITEAAGASNRFLDRPVKA
                     IDSDTGIGADLTELRKTVESLDPKRQGNLSPGRRLFGLIPFRGKIQNYFRQYQSSQTH
                     ISAILARLASGKDELLMDNAAIDTERANLWKTMHKLEQMIHISKSLDEKLEDKANELD
                     ATDPAKAKAIRETALFYTRQRTTDLLTQMAVTVQGYLALDLVKKNNVELVKGVDRAST
                     TTVAALRTAVTVAQAMTNQKLVLEQVTALNTTTASMIDSTGEMLRTQTGAIHEQAASS
                     TIPLETLQRAFQNIYDTMDQIDRFKVEALGNMKQTVDTLGREVEKSKGYIARAEGVNQ
                     AKLEPATSPLTPIEAK"
     gene            3564..>3823
                     /locus_tag="VE968_05315"
     CDS             3564..>3823
                     /locus_tag="VE968_05315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51280.1"
                     /translation="MTEEGDKVQRAIARFERVVRQIDARDGPAREAARRERRRLNAGL
                     SRTIKRLIIALGVIWLVTIIIGLAKPIGMVGFLAALVATVVVG"
BASE COUNT          825 a         1122 c         1114 g          762 t
ORIGIN      
        1 cgcggcaagg acagcgtcat gaatcgagga gaccgcgccc gcatgcccgc gtgcgaacgc
       61 gatgaggtcc tggttcgcct cctcggcggc accgagccgc tcacgcaagc gcgcgactgc
      121 acgttcttcg aagggaatta ccgtcgccat tgctgaagag aatacgcctg gaccggttaa
      181 tttcctacac cagacgctct taacggagtt caacagccgc ggacttcctt cctgccccag
      241 cacgccgagt tctcgatctc agctcttctt cgccggcctt gggctgcaca tgaggacgtg
      301 cccagattgg tctcggcccc gtcgccgcct gaagcacaaa gaaaagcggc ggtgcctttg
      361 ggcaccgccg cttctttttc ttcgaactga ctcgcgtctt agccgaggtg gttcgaaacg
      421 ttgttgaacg tcgtgttcaa cttgttgccg ataccctgca tcgcgccaat ggctgcgaca
      481 gcgataagag cggcaatcag gccatactcg atggcggtgg cgcccttctc gttcttaatc
      541 agcttcagaa acttgctcat ggtctttgct ccttggttcc aagtgcagcg cattcctgct
      601 ctgccccctg ctttgtcctg tcgcaggatg tctggaacct accccctgac ctcttgagaa
      661 aaagttacac cggagggttg ccgaggagtt aacgtcaatc agcgaaccgg ctgacctcag
      721 gcgatttttt gccctgtaga ctgccagtcc ttgaggaatg atgtaattcc tgcgtccgtt
      781 agcggatgct tgaaaagctg ccaaatgatc tttggtggcg cggtcatcac gtcggcaccg
      841 atctttgcag cttcgaccac gtgcattgga tggcgaacgc ttgcgacgag gatttcggtc
      901 gcgaaatcgt aattgtcata gatgagtcgg atgtcggcaa taagggccat gccgtcgaag
      961 ccaacgtcgt catggcgccc gacaaatgga gagatgaagg ttgcccccgc ctttgccgcg
     1021 aggagcgcct gcgccgcgga aaaacagagc gtcacattga ccattgttcc gtctgacgac
     1081 agcgctttgc aggccttgag ccctgctggc gtcaggggca ccttgatggc gatattgtcg
     1141 gcaagctttc tgaggacttc tgcttcgcgc atcatcccct cgtagtcgag cgcgacgacc
     1201 tcggccgaaa ccggcccatt cacgagcgct gcaatttcct tggcgacttc aagaaagttg
     1261 cgacccgact tatggatgag ggatgggtta gtcgtgaccc cgtcgagcag cccggtttcg
     1321 gcaagctctc gaatttcgtt gatctcggca gtgtcggcaa agaacttcat gggaattgca
     1381 tgcgctccag ctttatcgga tgggcagcca atagccggtg cggctgggca cgtcatccga
     1441 ttcgaaaggg acctcgatga gcgagcatgt gcgtgtggcg gataacgatg gttgtctcgc
     1501 gatcagcttg gcgcggccgg agcggcggaa tgcgatcacc agcgaaatgt acgcggcgct
     1561 tgccgatgca atcgaagagg cgacgggcaa tcaccgggtc cgggtcatta cgatcagcgg
     1621 cgatggacag gattttacag ccggcaatga tctcgccgat ttcctcgagg cggcgccccg
     1681 ctcttcaccg gaaattccgg tctggcgttt tcttcgtgcg ctagcacggt gcgagacacc
     1741 aatcattgcg gcggtccacg gcaattgcgt tggcatagga acgacattgc tgcttcactg
     1801 tgacctcgtc ctagccgacg acacggcccg attttcaatg ccctttgtcg atcttggtct
     1861 tgttcccgaa gcggcgagtt cgctgcttgt cccgcgcctc gcgggccgcc ggcgtgcagc
     1921 gcgctatcta ttgctgtgcg aatcattcgg accggatgaa gcgctaacaa tcggcctcat
     1981 cagccatcgc gcgcagcccg gagagctcga ggcggaactg aagcgcctgg tcgcgaacct
     2041 cctgtcaaag cccgccgaag cgttgcgcca aacgcaaaag ctgctccggc atggcgcacg
     2101 agacgaggtt ctcgagcgca tggagctaga aggaacaaga ttctccgagc gactggcctc
     2161 ggtagaggtg caacaagcga tcagcgcctt cttccaaaag cgcggatccg cagcgagctg
     2221 agttccctcg cgtcgcgctt gtccttgatc tgatgtgtct tacatttata atacagcaag
     2281 attgccagcg ttgaccggct acgtcagcag ccgcacaaga gtttggaaag gatgtttgag
     2341 atggcgagcg aacctgtgac tcaaacggta gcgccggcaa gcagcacaac aaagctgaag
     2401 cttgatccgc cggaagtcct gcagcccgtc gcacccgccg atgcggcagg tcttgtgccg
     2461 ctcagaagcg aggaaacgag cgaactcgac aatcgcgtcc agcgcttcgt tgacgaactt
     2521 gcaggtcttg atgcgaacag tcccgagttc ggaaagaagg tcgaccagct gaccgccatg
     2581 gggcgcaaag aaatcaccga ggccgctggc gcttcgaacc gtttcctcga ccggccggtg
     2641 aaggcgatcg acagcgacac cggcattggt gccgatctca cggaactccg caagaccgtg
     2701 gagtcccttg accccaagcg acagggcaac ttgtctcctg gccgccggtt gttcggactg
     2761 atccccttcc gtggcaagat acagaactat tttcggcagt atcagagctc gcagacccac
     2821 atttcggcga tcctggcgcg tctcgcgtcg ggcaaggacg agctgcttat ggacaatgcg
     2881 gcgatcgaca ccgaacgcgc gaacttgtgg aagacgatgc acaagctcga acagatgatc
     2941 catatttcca agagcctcga cgagaagctc gaggacaagg ccaatgagtt ggatgcaacc
     3001 gatccagcca aagcaaaggc aattcgcgaa acggctctct tctatacccg ccagcgaaca
     3061 accgacctcc tgacccagat ggccgtaact gttcagggct atctcgcact cgatctcgtc
     3121 aagaagaata acgtcgagct agtgaagggc gtcgaccggg cttcgacgac caccgttgca
     3181 gcattgcgaa cggccgtgac cgttgctcaa gcaatgacca accagaaact cgtcctggag
     3241 caggtaacgg cactcaacac gacgaccgcg agcatgatcg attcgaccgg cgaaatgctc
     3301 cgcacacaga ccggagcgat ccacgaacag gcagcaagct cgacgattcc gctcgagact
     3361 cttcagcgcg cgttccagaa catctatgac acgatggacc agattgatcg cttcaaggtc
     3421 gaagcactgg gtaacatgaa gcagacggtc gacacacttg ggcgagaggt cgagaagtca
     3481 aagggctata tcgcccgcgc cgagggagtg aaccaggcga agctcgaacc ggctacttca
     3541 ccgctcactc caatcgaggc gaagtgactg aagaaggcga caaggttcag cgcgcaatcg
     3601 cgcggttcga gcgggtcgtt cgccagatcg atgcgcgtga cggacctgcg cgcgaggcag
     3661 cacggcgcga gcgtcgccgg ctcaatgcgg gactcagccg gacaatcaaa cgactcatca
     3721 tcgctcttgg tgttatctgg ctagtcacga tcatcatcgg tttagcaaag ccaataggaa
     3781 tggtcggctt cctcgcggcg ctcgtagcga cggtcgttgt tgg
//
LOCUS       DASRBJ010000191         8500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_18539,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000191 DASRBJ010000000
VERSION     DASRBJ010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8500
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18539"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..1351
                     /locus_tag="VE968_05320"
     CDS             161..1351
                     /locus_tag="VE968_05320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HZU51281.1"
                     /translation="MGEPAILPFDWQDPFDLNQQLTDEERLVRDTAEAYAQEKLLPRV
                     TSAYLEERFDREIMNEFGELGLLGATVPLEYGGAGLGYVSYGLIARAVERVDSGYRSA
                     MSVQSSLVMYPIYAYGSEEQRSKYLPKLATGEWVGCFGLTEPDAGSDPGSMRTRAEKT
                     PAGYRLTGTKMWITNSPIADVFVVWAKSDAHNGKIRGFVLDKGLAGLSAPKIKEKLSL
                     RASITGEIVMDGVEVPDDALLPNVEGLKGPFGCLNRARYGISWGSMGAAEACYHAARQ
                     YTLDRKQFGKPLASNQLVQLKLANMATEIALGLQASLRVGRRLEQGELVPETISLIKR
                     NNCGKALEIARVARDMHGGNGISAEFQVIRHAANLETVNTYEGTHDVHALIMGRAITG
                     LSAF"
     gene            complement(1348..1878)
                     /locus_tag="VE968_05325"
     CDS             complement(1348..1878)
                     /locus_tag="VE968_05325"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HZU51282.1"
                     /translation="MYGEAPRIETERLILRPFNAGDLDELASIWSDDKVVRFIGGQKL
                     SREDTWRRSLAACGQWPYVGFGYWIAQLKADGEVVGQLGFADFKREIEPSLEGEAEFG
                     YVFSPRVHGQGIAREGCTAALEWADANLNCRSYPAIISPENGASIRLAERLGFNREPD
                     ATYRGEKIALFRRSRP"
     gene            complement(1881..2111)
                     /gene="rpmE"
                     /locus_tag="VE968_05330"
     CDS             complement(1881..2111)
                     /gene="rpmE"
                     /locus_tag="VE968_05330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011240972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HZU51283.1"
                     /translation="MKSGVHPDYHMINVEMTDGTKFQVRSTWGKEGDTLHLDIDPKVH
                     PAWTGGNTRLVNEGGQVARFNKRFGGLTLGKK"
     gene            complement(2208..2738)
                     /locus_tag="VE968_05335"
     CDS             complement(2208..2738)
                     /locus_tag="VE968_05335"
                     /inference="COORDINATES: protein motif:HMM:NF042461.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6580 family putative transport protein"
                     /protein_id="HZU51284.1"
                     /translation="MTSNRSRLIALLSAIITAAALRLVPHPPNFTPIGAIALFSGAYF
                     GRRTWAFVAPLAALFLSDLVLGFYHGMATVYATDLLIVVIGTLITRRSPLRIAMAAVV
                     SSIVFFTITNLGMWFSSGFYPRTLIGLEECFVAAVPFFQNSLAGDLFYTTLLFGGFRL
                     AEVILPQLRATEAQPA"
     gene            complement(2850..3326)
                     /gene="fabZ"
                     /locus_tag="VE968_05340"
     CDS             complement(2850..3326)
                     /gene="fabZ"
                     /locus_tag="VE968_05340"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020486454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019171 -
                     (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HZU51285.1"
                     /translation="MSEQMESVAMGPLDIRRVMAALPHRYPMLLVDRVESLDPDNGIV
                     AIKAVTINEPFFQGHFPARPIMPGVLIVEALAQAAGVLAVEALGLAGTGKLVYFMAIE
                     GAKFRQPVEPGVILKLHVEFVQKRSSVCKFAGRATIDGKTVAEANFTAMIADPPTG"
     gene            complement(3333..3923)
                     /locus_tag="VE968_05345"
     CDS             complement(3333..3923)
                     /locus_tag="VE968_05345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HZU51286.1"
                     /translation="MKNLLIATSIAASVALPSAASAQAIPPAVVAVVDLEKVTTNCNA
                     CRTASAALRSQVSGLQSRQQTLAAPLETEQRSIQTAVDALNGKEPDAALKSRVQAWQT
                     RRQQAQDEVTRQEQQIQANSEYVKRQIAEKLGPIYSQVMQRHGANIMVEIGTTLASGA
                     NLDVTNDVLTALNAALPTIQTTAPVAPTNRAQPQGR"
     gene            complement(3923..6403)
                     /gene="bamA"
                     /locus_tag="VE968_05350"
     CDS             complement(3923..6403)
                     /gene="bamA"
                     /locus_tag="VE968_05350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HZU51287.1"
                     /translation="MPATPAPAEQTIRSIAVRGNQRLEAETIRAYANLSPGQTYTAAT
                     LDQALKDLYATQLFADARIEGAQTGNLVIVVRENPVINRVILEGNKRLKDDKITPEIK
                     LAPRQIFTRSAVRADVDRILELYRRQGRFAARVDPKIVQLDQNRVDVVFEIYEGDLAK
                     IRAINILGNAHFSTDRLRKEMYSRQAGGFLGFLKSNDTYDPDRLAADQQKLRAFYLTE
                     GYADFRVVQALAELTPDRHNFIITYVVEEGPRYHLGTVEADSAVRDFPNAKVLQIAKL
                     TPGSWFNAKQVEDAITNLNEAAGNLGYAFADISPAYNRDAEKRVMNLTIKVAPTPRVY
                     VERIDITGNTNTRDKVIRREFRLNEGDAFSALKVKRSQDRIQSLGFFQDKLEIKQTEG
                     TTPDRVVLGVNVEEKPTGQLSVSGGYSSLERFVVQLAVSQNNFMGKGQSLDASVNWSL
                     YGKSIELGFVDPYFMDKSILLGANLFRRDYRAFDLIGTQRNTTYATLSTGGAIRMGFP
                     ITEYWSFGGRYQLSQDKVSLDQATFFTDGVCDPIKAGRYLCDELGSRLTSLVGISTIY
                     DDTDGIHPTRGQRLSFSEDFAGLGGDVRYLRTSVNATKYHNLGGSWILSLHGEGGYVA
                     PLQKATSSDADAVRLNDRFFDPGLRGFDIRGLGPRVVRIPYNSDGTLQALDINNDVTD
                     AIGGRAYYMGRLELEFPVSSGMKSLGLRPSAFIDVGSLWKVKQPQLLDVPFLCTANDL
                     TSTFASPKSNCSVDMSGAAHDPTAFTSSPGFKEVFLGNSPKPRLTIGVGVNWVSPFGP
                     LRIDLAKALLKQKGDDTKLFNFNVGTQF"
     gene            complement(6642..7757)
                     /locus_tag="VE968_05355"
     CDS             complement(6642..7757)
                     /locus_tag="VE968_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M50 family metallopeptidase"
                     /protein_id="HZU51288.1"
                     /translation="MPHPPIWLVLVAFVCALGPLVFFHELGHFLVARLFKIPAETFSI
                     GFGREILGWTDRRGTRWKVAWLPLGGYVKFVGDMSPASNPGAIESVPEHLRDVAFQTR
                     PTWQRFLVVLAGPAANFILAVLIFTALFAFVGAPTSSIVGATSPNSPAARAGIKPGDR
                     IVSLAGRPTPTFADLFSATAIRPNETVVVEVQRGSSIKKLRLTLASDSIKAANGEVVK
                     RGVLGIAASQTALEPMPIFRAVAEAVKETARATGSILDTIAQMVRGYVSPRQLGGPIS
                     IANVAGGVATLGPIEFIGLLALLSINLGFINLLPVPMLDGGHLFFYIIEAVRRRPVSV
                     AALDWAFRGGLALILALLLFATGNDLGLWSELERLIG"
     gene            complement(7763..>8500)
                     /gene="dxr"
                     /locus_tag="VE968_05360"
     CDS             complement(7763..>8500)
                     /gene="dxr"
                     /locus_tag="VE968_05360"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: protein motif:HMM:TIGR00243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HZU51289.1"
                     /translation="ARLLPVDSEHNAIFQCLATSRVEDVSKIVLTASGGPFRTASNLA
                     IANATPAEAVAHPNWSMGAKISVDSATLMNKGLELIEAHYLFGLPSRQLDVVIHPQSV
                     IHSMVEFIDGSVLAQLGSPDMRIPIAYALAWPERMATPAQKLDLAAIARLDFEVPDLG
                     RFPALRLAREALEAAGAAPVVLNAANEVAVSGFLGGEIGFCEIAILVQEALNGASYDA
                     PHSVGDVLEIDRLTRDRTRAMMKANCT"
BASE COUNT         1790 a         2469 c         2565 g         1676 t
ORIGIN      
        1 tcgacacccg agctttggga taacggtcaa gcagagcttt ggtcagactt caggtgttac
       61 gcgaacattg gcaaaaagtc gctagtctcg ctgccggggt ggcgccgaga acgggcgagc
      121 tgtaatagcg cggcgacttc atcaaagcgg ggattctaaa gtgggcgagc cagccatcct
      181 gccgttcgat tggcaggatc cgttcgatct caaccagcag ctcaccgacg aggagcggct
      241 cgtccgggac acagcggaag cttatgcaca ggagaaactg cttccacgag taacttccgc
      301 ctatctcgag gaacggttcg accgcgagat catgaacgag tttggcgagc taggattgct
      361 cggcgcgacc gttccgctgg aatatggagg cgccggactc ggctatgtaa gctatgggct
      421 catcgcccgc gccgtagagc gtgtcgacag cggctaccgg tcggcgatgt cggtgcagtc
      481 gagcctcgtc atgtacccaa tctacgctta cggttcggag gaacagcgat caaagtacct
      541 gccgaagctt gcgactggtg aatgggtagg ctgttttggc ctgaccgaac ctgatgcggg
      601 ctccgatccc ggaagcatgc gcacgcgggc tgagaagact cccgctggct accgtctaac
      661 cggtacgaag atgtggatta cgaactcgcc gatcgccgac gtgttcgttg tctgggcaaa
      721 atcggatgcc cacaacggca agatacgcgg gttcgttctc gacaagggcc tcgctgggct
      781 gtccgcgccc aagatcaagg agaaactgag cttacgcgcc tcgatcacgg gcgagattgt
      841 gatggacgga gtcgaagttc cggacgacgc acttcttccg aacgtcgaag ggcttaaggg
      901 tccgttcggt tgtctcaacc gagcgcggta cggcatcagc tggggatcga tgggtgcggc
      961 ggaggcctgc taccacgctg ctcgccaata cacgctcgac cgaaagcagt tcggcaagcc
     1021 gcttgcctcg aaccagctcg tgcaactgaa gctcgcaaac atggcgaccg agattgcgtt
     1081 gggactgcag gcgtcgttgc gtgtgggccg acgtctcgaa cagggcgagc ttgttcctga
     1141 gacaatcagc ctcatcaagc gcaacaactg tggcaaggcg ctcgagatcg ctcgcgtcgc
     1201 gcgggacatg cacggtggaa acggcatttc cgcggagttc caggtgatcc gacacgcggc
     1261 gaacctcgag accgtcaaca cctatgaagg gacgcacgac gtccatgccc tcataatggg
     1321 acgagcgatt acgggactga gcgcctttta agggcggctg cgccggaaaa gcgcgatttt
     1381 ctcgccgcgg tacgtggcgt ccggctcacg attgaatcca agccgctcgg ccaggcgaat
     1441 ggacgcgcca ttctccggtg aaatgatcgc cggatacgag cgacaattga gatttgcgtc
     1501 cgcccactcg agcgctgccg tgcacccttc gcgagcgatc ccctgcccgt gcacccgcgg
     1561 cgagaaaaca tagccaaact cggcctcgcc ttcgagacta ggttcaatct ctcgcttgaa
     1621 gtcggcaaaa ccgagctggc cgacgacttc gccatcagct ttcaactgag cgatccaata
     1681 accaaacccg acgtacggcc attgaccaca ggcggcgagc gagcgccgcc acgtgtcctc
     1741 gcggctcagt ttttgcccgc cgatgaagcg cacgaccttg tcgtcgctcc agatggaggc
     1801 aagttcgtcc aagtcgccgg cgttgaacgg ccgaaggatg agacgctcag tctcgatccg
     1861 cggagcctcg ccgtacaagc ttattttttg ccgagagtaa gaccgccaaa gcgcttgttg
     1921 aagcgcgcga cctggccacc ttcgttgacg agacgggtgt tgccgccggt ccaggccggg
     1981 tgcaccttgg gatcaatatc gaggtgaagc gtgtcacctt ctttgcccca ggtcgaacga
     2041 acctggaact tggtaccgtc ggtcatttca acattgatca tgtggtagtc ggggtgaacg
     2101 ccggacttca tgtgatattt ccttgagtta gcagctggtt tccgaccagc cgcagcaagc
     2161 tgaatggcgc ctctacagtt ctgatggcga tcttgcaacc aagctggcta ggcgggttgg
     2221 gcctccgtgg cccgcaattg cggaagaatg acttcggcaa gccggaagcc gccgaagagc
     2281 agcgtcgtgt agaagaggtc gcccgcaagg ctgttctgga aaaacggaac agccgccacg
     2341 aaacattctt cgagaccgat cagcgttcgt ggataaaagc cgctcgagaa ccacattcca
     2401 agattggtga tcgtgaaaaa cacaatcgag cttacgactg cggccattgc gatcctcagc
     2461 ggagagcggc gcgtgatcag tgtaccaata acaacgatca gcaagtctgt tgcgtaaact
     2521 gttgccattc cgtgataaaa gccgagcacg agatcgctta ggaacaatgc tgccaagggc
     2581 gcaacaaagg cccacgtccg acgcccgaaa taggcgccac tgaatagcgc gatcgctccg
     2641 atcggtgtaa agttaggcgg atgcggcacc agccgcagcg cagccgcggt tatgatggcg
     2701 gacagaagtg cgatgaggcg gctgcggttc gacgtcatgt tcgttccaat aatgcgctcg
     2761 aagtcgattt aacagcccac atcgggatca agcattagca actaccggca tggacgagcc
     2821 gacgcctaca tgatcgcgat aaaagggttt cagcccgtcg gcgggtctgc aatcatcgcc
     2881 gtgaagttcg cctcggcaac ggtttttccg tcgatggtcg cgcgacctgc aaacttgcac
     2941 acgctcgacc gcttttgcac gaattcgacg tggagcttca ggataacccc cggttcgact
     3001 ggctggcgaa actttgcgcc ttcgatcgcc atgaaataga caagcttgcc cgtaccggcg
     3061 agaccaaggg cttccacggc aagaacgcca gctgcctgcg cgagcgcctc gacgatcaac
     3121 actccaggca tgatcgggcg tgccggaaag tgcccctgga agaaaggttc gttgatcgtg
     3181 accgccttga tcgcaacaat gccattgtcc gggtcgaggc tctcaacccg gtcaacgagc
     3241 agcattggat agcggtgcgg aagcgccgcc atgacccgcc ggatgtccag aggtcccatg
     3301 gcgacgcttt ccatttgctc gctcatctga gcttaacgac cctgcggctg agcccggttg
     3361 gtgggggcta ccggcgcggt cgtctggatc gttggaagtg ccgcattcaa tgccgtcaga
     3421 acgtcattgg tgacgtcaag atttgcaccg ctcgcgagcg ttgttccaat ctcgaccatg
     3481 atgttggcgc cgtgacgctg cataacctgg ctataaatcg gcccaagctt ttcggcgatc
     3541 tggcgcttca catactcgct gttggcctga atctgctgct cctggcgagt gacctcatcc
     3601 tgggcttgct gccgtcttgt ctgccaagcc tgcaccctgc tcttgagtgc tgcgtcgggc
     3661 tccttgccgt tcagcgcgtc aaccgcggtt tggattgagc gctgctcggt ctccagcgga
     3721 gcggcgagcg tctgctggcg agactggagg ccgctcacct gcgaacgaag cgcagcactt
     3781 gccgtcctgc aggcgttgca atttgttgtc accttctcga gatcaacgac ggcaaccacc
     3841 gcgggaggga tcgcttgcgc gctcgctgcg ctgggcagcg caacggaagc ggcgattgat
     3901 gtagcaataa gcagattttt catcagaatt gagttcctac gttgaaattg aacaacttgg
     3961 tgtcgtcacc cttttgcttg agcagcgcct tggcgagatc gatgcgcaat ggcccgaaag
     4021 gcgataccca attcacgccg acgccgatcg taagtcgcgg cttcggtgaa ttgccgagga
     4081 aaacttcctt gaaccctggt gaagatgtga acgccgtcgg gtcatgcgcg gcaccgctca
     4141 tgtccacgct gcagttcgac ttcgggctcg cgaaggtcga tgtgagatcg ttggctgtgc
     4201 aaaggaacgg aacgtcgagc agctggggct gcttcacttt ccacaaagag ccaacatcga
     4261 tgaaagccga gggccgcaac ccgagactct tcatcccgga gctgaccggg aattcaagct
     4321 ccagccgccc catataatag gcacggccgc cgatggcgtc agtgacgtca ttgttgatat
     4381 cgagcgcctg cagggtcccg tccgagttgt acggaatacg cacgacgcgc gggccaaggc
     4441 cgcggatatc aaaaccccga aggcccgggt cgaaaaagcg gtcgttcaac cgaacagcat
     4501 cggcgtccga tgacgtagct ttctggagcg gcgcgacgta gccgccctcg ccgtgcagag
     4561 acaggatcca gctgccgccg agattgtgat acttcgtcgc gttaacgctc gttcgaagat
     4621 agcgcacgtc gccgccaagg ccggcgaaat cctccgagaa ggacaagcgt tgtccccggg
     4681 taggatggat tccatcggta tcgtcgtaaa tcgtcgaaat cccgaccaat gacgttagac
     4741 gactgccaag ttcgtcgcac aaatagcgcc ccgccttgat ggggtcgcaa acgccgtccg
     4801 tgaagaaggt cgcctggtcg agcgaaacct tgtcctggct aagctgatag cgaccaccaa
     4861 agctccaata ttcggtgatt gggaagccca tgcggattgc gccaccggtg ctcagcgtcg
     4921 cgtaagtagt gttgcgctgc gttccgatga gatcgaacgc gcgatagtcg cgcctgaaga
     4981 gattggcacc gagaagaatc gacttgtcca tgaaatacgg atcgacaaaa ccaagttcga
     5041 tggacttgcc gtagagcgac cagttgacgg aggcgtcgag cgactgcccc ttccccatga
     5101 aattattctg gctgacggcg agctggacaa cgaaccgctc caggctcgaa tagccgccgg
     5161 agacggaaag ctgtcccgtt ggcttttcct cgacattgac gccaagaacg acgcggtcgg
     5221 gcgttgttcc ctcggtctgc ttgatctcga gcttgtcctg gaagaatccc aagctctgaa
     5281 ttcgatcctg gctgcgcttc accttgaggg cgctgaaggc gtcgccttca ttgagacgga
     5341 attcgcgcct gattaccttg tcgcgggtgt tggtgttgcc cgtgatgtcg atcctctcga
     5401 catagacgcg tggtgtcggc gcgaccttga tcgtgaggtt catcacgcgc ttttcggcgt
     5461 cgcgattata ggctgggctg atgtcagcga acgcatagcc aaggttgccc gcggcctcgt
     5521 tgaggttcgt gatcgcgtct tcgacctgct ttgcgttgaa ccagcttcca ggcgtcagct
     5581 ttgcgatctg caacactttg gcattgggga agtcccgcac cgcactgtcg gcttcgaccg
     5641 tgccgaggtg gtaacgcggt ccctcttcga cgacgtaggt gatgatgaag ttgtggcggt
     5701 caggcgtaag ttcggcaagc gcctggacta ctcggaagtc ggcgtagccc tcggtaagat
     5761 aaaaggcgcg gagtttctgc tggtccgccg cgagccggtc cggatcgtac gtatcgttcg
     5821 acttgaggaa gcccaggaat ccgccagcct gccgcgagta catttccttg cgaaggcggt
     5881 ccgtcgagaa gtgcgcattg ccgaggatgt tgatcgcccg gatctttgcg aggtcgccct
     5941 cgtatatctc gaagacgaca tcgaccctgt tctgatcgag ttgcacgatc ttgggatcga
     6001 cccgcgctgc aaatcgccct tgccggcgat agagctcgag tatccgatca acgtctgcgc
     6061 gaaccgccga gcgcgtgaag atctgccgcg gagcaagctt gatctcgggc gttatcttgt
     6121 cgtccttgag gcgcttgttt ccctcgagga tgacccggtt gatgaccggg ttttcgcgaa
     6181 cgacgatcac caggttcccc gtctgggcac cttcgatgcg agcatccgcg aagagttgcg
     6241 ttgcgtagag gtccttcagg gcctggtcga gcgttgccgc cgtataggtc tggcccggtg
     6301 aaagattcgc gtacgcacgg atcgtctcag cttcgaggcg ctgattgccc ctgaccgcga
     6361 tcgagcgaat cgtctgctcc gcgggtgcgg gcgtggccgg caagacgttt tgcgattgat
     6421 tctgtgaagc gccggcggca gccggcgttt gttgtgctgc tggcgcgggt tgcgcaagca
     6481 acggcgctgc ggagctacta agcaccgttc cgaccagaaa cagagtgcca gcgcgccggc
     6541 taaagcaatt cgaccttgaa atcacgcgtc cccgccttgt gtgcaaatgg agagcggcgc
     6601 gcttcgccgc aaagccccgt tactgccctg ccccaaccct cctagccaat caagcgttca
     6661 agctcactcc agaggccgag atcgtttccc gttgcgaaaa gaagcagagc gagaatgagt
     6721 gcaaggccgc cacggaacgc ccaatcgagt gccgcgacac tgacagggcg gcgccggacc
     6781 gcctcgataa tgtagaaaaa gaggtgtcct ccatcgagca tggggactgg caacaagttg
     6841 atgaatccga gattaattga cagtagtgcg agcaagccaa tgaactcaat cggtcccaaa
     6901 gttgcgacgc cacctgcgac attcgcgatg gatatcggtc cgccaagctg ccgcggcgag
     6961 acatagcccc gaaccatctg ggcgatcgtg tcgagaatcg aaccggtggc acgggcggtc
     7021 tctttcactg cttccgccac cgccctgaaa atcggcatcg gttcgagtgc cgtctggctt
     7081 gcggctattc caagcacacc gcgcttcacg acttcgccat tggctgcctt gatcgaatca
     7141 gacgcaagcg tcagccgcag cttcttgatc gacgacccgc gttgcacctc aacgacaacc
     7201 gtctcgttgg gccggattgc cgtggcactg aaaagatcgg caaaagttgg agtgggacgt
     7261 ccagcgagcg agacaattcg gtcgccgggc ttgattccgg cgcgcgcggc tggcgaattg
     7321 gggcttgtcg caccaacaat gctcgatgtc ggcgctccga caaaagcaaa cagggctgtg
     7381 aagatcagca cggcgaggat gaagtttgcc gcgggtcccg caagaacaac cagaaaccgc
     7441 tgccacgttg gtcgggtttg aaacgcgaca tcccgcaggt gctccgggac gctctcgatc
     7501 gcacctggat tgcttgcggg gctcatgtcg ccgacaaact ttacataacc accgagcggc
     7561 aaccaggcga ctttccatcg cgtgcctctc cggtcggtcc acccaaggat ttcacggccg
     7621 aacccgatcg agaatgtctc ggcgggaatc ttgaaaaggc gggcgacaag gaagtggccg
     7681 agttcatgga agaagacgag cggaccaagc gcacagacga aggcgacgag aacgagccaa
     7741 atcggcggat gaggcatgga tatcaagtgc agttcgcctt catcattgcc cgggtgcgat
     7801 cgcgcgttag ccggtctatt tccaacacgt cgccgacgga atgcggtgca tcgtagctcg
     7861 cgccgttaag cgcttcctga acgagaatcg caatttcgca aaagccgatc tcgccgccaa
     7921 gaaagcccga cacggcgact tcatttgccg cattgaggac aaccggtgca gcaccggccg
     7981 cctcgagcgc ttctcgagca agcctcagcg ccggaaaacg tcccagatcg ggcacttcaa
     8041 aatcaagccg ggcaattgcc gcgagatcga gcttttgggc cggtgtcgcc atccgttcgg
     8101 gccaggcaag cgcgtacgcg atagggatgc gcatgtccgg actgccaagc tgggcaagca
     8161 ccgatccgtc gatgaactca accatagagt ggatcaccga ctgagggtgg atgacaacgt
     8221 cgagctggcg cgagggcaat ccgaacagat aatgcgcctc aataagttcg aggcccttgt
     8281 tcatgagcgt tgccgagtcg acggagatct ttgctcccat cgaccagttt ggatgcgcga
     8341 ccgcctcggc gggagtcgca ttggctattg caaggttcga agccgtgcgg aacggaccgc
     8401 cgctcgccgt gagaacgatt ttcgagacat cctctactct actcgtggca aggcactgaa
     8461 aaatagcatt atgttcgcta tcgaccggca atagccgagc
//
LOCUS       DASRBJ010000192         2847 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_77559,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000192 DASRBJ010000000
VERSION     DASRBJ010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2847
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77559"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2140)
                     /locus_tag="VE968_05365"
     CDS             complement(<1..2140)
                     /locus_tag="VE968_05365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008066979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HZU51290.1"
                     /translation="MMAGVAAYFMLPVAPLPQIDFPTIQVSANLAGASPATMASSVAA
                     PLERHLGTIAGVSEMTSRSGVGSSQITLQFDLSRDIDGAARDVEAAINASRADLPATL
                     RSNPTYRKVNPAEAPVLILALTSRTRTPSDIYDTVSTVVQQRLLQVQGVGNVELGGAA
                     LPAVRVEVNPRALAQYGIALEDVRTALQSESANRPRGTLDANGYSWQIYSNKPGRYAA
                     DYRDTIVAWRNGSAVRLRDIATVEDGPEDIRTMGLFNGERAVPIIISRQPGANIVQVV
                     DALKAQIPALQNLVPSDVHLSVASDRTLTIRASLREVEITLLIATLLVVLVVSLFLRS
                     WRATLIPAVAVIASLLGTFVLMYLAGFSLDNLSLMALTVATGFVVDDAIVVVENISRH
                     VEAGMPPLQAALTGAREVGFTVLSISLSLIAVFVPLIFMGGVVGRLFREFALTISVAV
                     MISLLVSLTTTPMLAARLLRREEREGRVMATARKSFDWAQARYARVLDWALDHRGAVL
                     ILLAGTVALNVYLIAIAPKGFFPQQDTGGLMGGIRADQSISFSDMQEKLTRITNIVRH
                     DPSVATVVAFTGGSRAGGGFMFITLKPRSERPPAPVIIARLRPKLARVSGVSLFLNPV
                     QDLQVGGRQTNSTYQYVLQADDPDVLKSAGEKLVNALKRYPGILTDVDIDQQEAGADA
                     FVDVDRDTAARLGVPMQAIDATLYDAFGQRQ"
     gene            complement(2200..>2847)
                     /locus_tag="VE968_05370"
     CDS             complement(2200..>2847)
                     /locus_tag="VE968_05370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008066980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HZU51291.1"
                     /translation="SVSLGSAVNSIEQIERQIGLPAALTTSFSGAASAFKASLANEFW
                     LVLAAIVVVYIVLGVLYESFVHPVTILSTLPSAGIGALVCLWITGSGLGVIGIIGIVL
                     LIGIVKKNAIMMIDFALDAMREEGADSRLAIRQAALLRFRPIMMTTFAALFAALPLIF
                     GGGMGHELRQPLGVAIAGGLIFSQVLTLFTTPVIFLSLENWRERSWGRASGPLPA"
BASE COUNT          621 a          857 c          865 g          504 t
ORIGIN      
        1 cctggcgctg gccgaaggca tcgtatagcg tcgcatcaat cgcctgcatt ggaacgccga
       61 gccttgccgc agtatcacga tcaacgtcga caaaagcatc ggccccagct tcctgctggt
      121 cgatatcgac atcggtcaaa atgccgggat agcgcttgag cgcattcacc agtttctcgc
      181 cggccgattt gaggacgtcc gggtcgtccg cctgcagaac atattgatac gtgctgttgg
      241 tctgccttcc gccgacctgc agatcctgca caggatttag gaacaggctg acgccgctca
      301 cgcgtgcgag cttgggccga agccgcgcaa tgattaccgg tgccggtggt cgttccgaac
      361 gtggctttaa ggtgatgaac atgaatccac cgcccgcgcg cgatccaccg gtaaaggcga
      421 caacggttgc gacggaggga tcatggcgaa cgatgttcgt gatcctggtc agtttctcct
      481 gcatgtcgct gaaggaaatg ctctggtccg cccggatccc acccatcagg ccacccgtgt
      541 cctgctgcgg gaaaaagccc ttgggggcga tcgcgatgag atagacgttg agagccacgg
      601 tcccggctag gaggatcaat accgcgcctc gatgatcaag tgcccagtca aggacccttg
      661 cgtaacgcgc ttgagcccag tcgaagcttt tgcgtgctgt tgccatcact cggccttcac
      721 gttcctcacg gcgaaggagg cgcgccgcga gcatcggcgt cgtcgtgagt gagacgagaa
      781 ggctgatcat caccgctacc gaaatcgtca gcgcgaactc gcgaaagagc cgtccaacaa
      841 ctccgcccat gaaaatcagc ggcacgaaca cggcaatgag gctgagcgag atcgagagga
      901 cggtaaatcc cacctcgcgc gcgcctgtaa gcgctgcctg caggggaggc atgcccgcct
      961 cgacgtgccg actgatattc tcgaccacca caatcgcatc atcgacaacg aagccggtcg
     1021 caacggtcaa tgccatcaac gaaagattgt cgagcgagaa gcccgcaagg tacatcaaca
     1081 cgaacgttcc aaggagcgac gcgataaccg cgacggccgg gatcagcgtt gcccgccagc
     1141 tgcgcaaaaa gaggctgacg acaaggacca cgagcaaggt cgcgatgagg agcgtgatct
     1201 caacttcgcg caaggacgcg cggatagtca acgtccggtc ggaggccacc gacaggtgga
     1261 catccgatgg gacgagattt tgaagcgctg gtatctgcgc ttttaaggcg tcgaccacct
     1321 ggacaatgtt cgcgcccggt tgccggctga tgatgatcgg gactgcgcgc tcgccattga
     1381 acagccccat ggtgcgaatg tcttcagggc catcctccac ggtcgcgata tcccggagcc
     1441 gaacggccga gccattacgc cacgcaacga tcgtatcgcg gtagtccgcc gcatagcggc
     1501 cgggcttgtt cgaatagatc tgccagctgt agccgttcgc gtcgagcgtg ccgcgcggcc
     1561 gattggcgct ttcggactgg agcgccgtgc gcacgtcctc gagcgcaatg ccatattgcg
     1621 cgagcgctcg tgggttcact tcgacgcgca ccgccggtag cgcagcgccg ccaagctcga
     1681 cgttgccgac gccctgcacc tgcagaagac gctgctgcac gacggtcgag accgtatcgt
     1741 aaatgtccga gggcgtccgc gtgcgcgaag tcagcgcgag gatgagcact ggtgcttcgg
     1801 ccgggttgac cttgcggtag gtgggattgc ttcgcaatgt tgccggaaga tcagcgcgcg
     1861 aagcattgat tgccgcctcg acgtcccgcg ccgcgccgtc gatgtcgcgc gatagatcga
     1921 attgaagcgt gatctggctc gatccaaccc ccgaccggga ggtcatctcg ctcacgccag
     1981 cgatcgttcc aaggtggcgc tcaagcggtg cggcaacgct cgaagccatg gttgccgggc
     2041 ttgcaccggc aagatttgcc gaaacctgga ttgttggaaa atcgatctgc ggcagtggtg
     2101 ccaccggaag catgaaataa gccgcgacgc cagccatcat taagccgatc gtcagcagca
     2161 acgtgccgat cgggcgccga atgaatggcg cggagatatt catgcgggaa gtggaccgga
     2221 cgctcgtccc cagcttcgtt cgcgccagtt ctcgagcgag aggaagatga ccggggttgt
     2281 gaacaaggtc aggacctgac tgaaaatcag tccgccggct atggcaacac caagaggctg
     2341 cctaagctca tggcccattc cgccgccgaa gatcagcggg agcgccgcga aaagagcggc
     2401 gaaggtcgtc atcatgatcg gacgaaatcg aagcaatgcc gcctgccgga tcgccaatcg
     2461 gctgtcagcg ccttcctcgc gcatcgcgtc gagcgcgaaa tcgatcatca tgatcgcgtt
     2521 cttcttcacg atcccaatca ggagaacgat gccaatgatg ccgatgaccc caaggccaga
     2581 tcccgtgatc cacaggcaaa cgagtgcccc aatgccagcc gagggaagag tcgacaggat
     2641 cgtcaccgga tggacaaaac tttcgtaaag cactccaagc acgatgtaga caacgactat
     2701 agccgcgagg accagccaga actcgttggc aagcgaagcc ttgaatgcgc ttgcggcacc
     2761 tgagaaactg gtcgtgagcg cggcaggaag gccgatctgg cgctctattt gctcgatgct
     2821 gtttaccgcg cttccaagtg aaacgct
//
LOCUS       DASRBJ010000193         3658 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_77597,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000193 DASRBJ010000000
VERSION     DASRBJ010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3658
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77597"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            32..3145
                     /locus_tag="VE968_05375"
     CDS             32..3145
                     /locus_tag="VE968_05375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51292.1"
                     /translation="MSYSGLLADSAKTLERITAALDLPFRLTKADRAKVETFLSNDLR
                     HHRAPEDEVSPQLSRVPGLEDAYAVLSHWADGNPDRDADYRRLDQARHRVDQTGELLA
                     EILESNRLERKRRASATSQADAALAELNRAQVSLQNLGELERKLDDQKASLDALASDI
                     RDQRAIERLRTVVETLSSELRDRSASDRALASLAGQTDALNSQVAQLKQELEDARSQA
                     HQLASKLRTRENEIEEIQTELSTVRDQLKSVKRKYRSTQDILDREREHLKVLRRNLAA
                     AESSLAEYHRSLPWRLYTVLANVLRKTKRIMHRALGVSSHRRRHDRVSALCNSQLFDA
                     SWYLETYPDVAASGIDPAVHYLEFGWREGRDPGPHFSTTAYLKANADVAARGANPLLH
                     YVEYGHFEGRSAPEHKAPLSSTSPREEFGPAAPSAIFSIEPEHPLSWTPSGQIEGDDP
                     RSFVVDGRGVAYVPNPAQRRALEATLSRLAKICISGAIGEQATDVDMAQAELLDAWHA
                     GRGVLRSRWRIAGQDAPIAVRVLEIDSNGEAHLAGETLVESELEAVDAKPANPLFPLL
                     FVFTQADGILLGWRALVFPSLARGGLHYGEFIALSNTLTGNGEAGKDVCAISDILTEG
                     LVALRDGATPLVASIAVDIRGQDGTHPLFQREFQSWLSGIARIGAKPLGTQDDQPESA
                     YLARTVTVEADDARQSGQAVLQLTGDMIPTISVLVAPFSPTRNGDCPAPAMIVLGKEP
                     SQPATLIRMPTESASLANELGCGFPRLVKTDGSLADVSTSQAIALRLPAERTLTDAEL
                     LMPIATPGLTIELGSEELTWFISPSSWAEADLLQALQSLNGQVTAAPFNIAFVSSPTP
                     DSLRLAQQLFPDRVRVFSDAQEAIERVEGPLLAYLGPGVILHDVRSSALLTSLLREPG
                     TATSSAVLLSVESRGKGWSVAAVDAGQVHSPVNRGGTPAGHGAAHATALWRSCWPVML
                     PPRDLWVARLETVRQWRRNGQLTGRHLCTSLVTASYCAKRSPLDPIFAPPEAAADRAL
                     STEVLVG"
     gene            3142..>3658
                     /locus_tag="VE968_05380"
     CDS             3142..>3658
                     /locus_tag="VE968_05380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51293.1"
                     /translation="MKLTVLIPSEEYRNNAGARIRYGRIAPELERHGVRLTFEDISKF
                     DARTVNCDLLLVSKCYDARSLVAAEILSRRGLRVGVDLFDDYFSQIGDSRMVRFRGWL
                     RQMLARSDFALCSTLAMQKVIERYAPSVAVHVLNDPAPPIDEARLAAILREKRDEARA
                     SGRLKLAWFGVG"
BASE COUNT          711 a         1136 c         1086 g          725 t
ORIGIN      
        1 ggtgcagact cgatctcacc cgagatgctt cgtgtcttat tctggcctgc tcgcggattc
       61 ggcaaagact ctcgagcgga tcacggctgc gctcgacctg ccattccgtc tgacaaaagc
      121 cgatcgcgca aaggtggaaa ctttcctttc gaacgatctt aggcatcatc gggcgcccga
      181 ggacgaggtc tcccctcagt tgtcgcgagt acccggtctt gaagacgcct atgcggtctt
      241 gagccattgg gctgacggga accccgatcg ggacgcggat tatcggcggc tcgaccaagc
      301 tcgccatcgc gtagatcaga cgggcgaact gttggccgaa atccttgaga gcaatcggct
      361 cgagcgaaag aggagggcat cggcaacgag ccaggccgat gccgcgcttg ccgagctcaa
      421 tcgcgcccag gtctcgcttc aaaatctcgg cgagctcgaa cggaagctag atgatcagaa
      481 ggcgtcgctc gacgccctcg cctccgacat acgcgatcag cgagcgatag agcggctcag
      541 aacggtagtt gagacgctct cgtcggaact tcgcgaccgc agcgccagtg atcgggctct
      601 tgcctcccta gccggccaaa ccgatgccct gaattcgcaa gtcgctcaac ttaagcagga
      661 gctcgaagac gcgcggagcc aagcgcacca gcttgcctcg aagctgcgta cccgagagaa
      721 cgaaattgag gagattcaga ccgagctaag cacggtccga gaccagctca agagtgtcaa
      781 acggaagtat cggtccacac aggatatcct cgatcgcgaa cgggaacatc tcaaggttct
      841 ccgccggaat cttgccgccg ccgaaagctc actggctgag taccaccggt cgctgccctg
      901 gcgtctctat accgttctgg ccaatgttct ccgcaagacg aagcggatca tgcaccgagc
      961 gctcggcgtt tccagtcacc ggcgccggca cgacagggtg agcgccctct gcaactccca
     1021 gttgtttgat gcatcttggt acttggaaac ctaccccgac gtcgcggcca gtggcatcga
     1081 tccggccgtt cactatctgg aatttggctg gcgggagggg cgtgaccccg gacctcactt
     1141 ttcgacgacc gcgtatctga aggccaatgc cgacgtcgcc gctcgtggag caaatccgtt
     1201 gctgcactac gtcgagtatg gccattttga gggacgaagc gctcccgagc ataaagcccc
     1261 actctcgagc acctcgcctc gagaagaatt cggaccggcg gctccttccg cgattttctc
     1321 gatcgagccg gaacatcccc ttagttggac gccgagcggc caaatcgagg gcgatgatcc
     1381 gcgcagcttc gtcgtggacg gccggggcgt tgcttacgtc cccaatccgg cccaacgacg
     1441 tgcgctcgaa gcaactctct cccgcttggc aaagatctgc atttccgggg ctattggcga
     1501 gcaagcgacg gacgttgaca tggctcaagc ggagctgctg gatgcctggc acgcgggccg
     1561 cggcgtgttg cgcagccgtt ggcgcatcgc tgggcaggac gcaccgatcg cagtccgcgt
     1621 cctcgagata gatagtaatg gagaagctca cctcgccggt gaaacgctgg tcgagagcga
     1681 gcttgaggcc gtcgacgcaa agccggcaaa cccgctcttt ccgctcctct tcgtcttcac
     1741 gcaggccgat ggaatcttgc tcggctggcg agctctcgtt tttccctcgc tcgctcgtgg
     1801 aggtctccat tatggggaat tcatcgcgct ttccaacact ttgacgggca acggcgaggc
     1861 cggaaaggat gtatgcgcga tcagcgacat tcttaccgaa ggcttggtcg cgctgcgtga
     1921 tggcgcgaca ccgcttgtcg cgagcattgc cgtagatatt cgtggtcagg acggaacaca
     1981 cccgctgttc cagcgggaat ttcagtcgtg gctgtccggg attgcacgaa taggcgcgaa
     2041 gccgctcgga actcaggatg accagcccga aagcgcgtac ctggcccgca cggtaacagt
     2101 ggaagccgat gatgcgcgac agtccggaca agcggtgctc cagctcacgg gcgacatgat
     2161 cccgacgatt tcggtattgg tcgccccatt ctcgccaacg cggaatggcg attgtcccgc
     2221 gccggctatg atcgtccttg gaaaggagcc ctcgcaaccc gcaaccctca ttcggatgcc
     2281 cactgaaagc gcttcattgg cgaacgaact tggctgcggc tttcctcgcc ttgtgaagac
     2341 agacggatca ctggcggacg tctcgacctc tcaggccatt gcccttcgat tgccggccga
     2401 gcgaacgttg acggatgccg aactgttgat gcccatagct acgccaggac tcacaatcga
     2461 gcttggctcg gaagagctca cgtggtttat ctcgccctca tcgtgggcag aagccgacct
     2521 cctgcaggcg cttcaaagcc tcaatggaca ggtaaccgca gcgccgttca acatcgcatt
     2581 tgtatcgtcc ccgacgccgg actcacttcg cctcgcgcaa caattgtttc ccgatcgcgt
     2641 ccgagtcttc agtgacgccc aagaagccat cgagcgggtg gaaggcccgc ttttagccta
     2701 tctcggcccc ggcgtgatct tgcatgatgt ccggtcctcc gctctgctga ctagcctgct
     2761 tcgcgagccc ggaaccgcca cctcctctgc agtgctcctg tcagtcgaaa gccgcggcaa
     2821 agggtggtca gtggcagctg tcgacgccgg ccaagtccat agcccggtca accgtggtgg
     2881 cacacctgca ggtcacggag ctgcacacgc taccgcatta tggcggagct gctggcccgt
     2941 catgcttcca ccgcgagact tgtgggttgc acggctggaa accgttcgcc aatggcgccg
     3001 taatggtcag ctgaccggtc gtcacctgtg tacctcgctc gttacggcta gttattgcgc
     3061 gaagcgaagc ccactcgacc caattttcgc tcccccggaa gcagcggccg accgagcact
     3121 atcgaccgag gttctggttg gatgaagctc acagtcctca tcccttccga ggaatacagg
     3181 aacaacgccg gagcgcgcat tcgttacggg cgcattgcgc cggagcttga gcggcacggg
     3241 gtcaggctta cgttcgaaga catttcgaag tttgatgccc gaactgtgaa ttgcgacctg
     3301 ctcttggtca gcaagtgcta tgatgcgcga tcgctcgtcg ccgccgagat cctctctcgg
     3361 cggggactgc gggtcggtgt cgatctgttc gatgattatt tcagccagat tggcgatagc
     3421 aggatggtcc ggttccgggg ctggctgcgg caaatgctgg cgagatcaga cttcgcgctc
     3481 tgctcaacac tcgccatgca aaaggtgatc gaacgctatg caccgtcggt cgctgtgcac
     3541 gtcttgaatg accccgcgcc tcccattgac gaagcgcgcc tcgccgccat tcttcgtgaa
     3601 aagcgtgatg aagcgcgggc cagtgggcgt cttaagctgg cctggttcgg cgtgggcg
//
LOCUS       DASRBJ010000194         2420 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_733603,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000194 DASRBJ010000000
VERSION     DASRBJ010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2420
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_733603"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            453..1244
                     /locus_tag="VE968_05385"
     CDS             453..1244
                     /locus_tag="VE968_05385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51294.1"
                     /translation="MNTKANEGFGATEPKDDGKRERSTIEFPYMGLEDAVVIAKGIHE
                     TTGAGVCQHDQLAAAIGMSMNSSGYRMRLSAARLFGFIETDRAAGGVRLTDLGQMVVD
                     STRERAAKAKAFLNVPLFKRLFETKRGQLLPPPAALEREMASMGVSQKQTERARQVFQ
                     RSAEVAGFFEMDRSRLIMPPGVSDNGPAPTDEKPEQKNEGPSGGGGGGGSLPPGVDPI
                     IQGLLARLPKSGDVWAETDRKLWLQLLEGSFKIIYKDKAESAPVS"
     gene            1422..>2420
                     /gene="recA"
                     /locus_tag="VE968_05390"
     CDS             1422..>2420
                     /gene="recA"
                     /locus_tag="VE968_05390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010234893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HZU51295.1"
                     /translation="MSQPALRLVEGSSMDKSKALSAALTQIERQFGKGSVMRLGKNDK
                     AMDIEAISSGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICA
                     FIDAEHALDVVYARKLGVNTDDLLISQPDAGEQALEIADTLVRSGAIDVLVVDSVAAL
                     VPRAELEGEMGDAQPGSQARLMSQALRKLTASINKSRTMVIFINQIRMKIGVMYGSPE
                     TTSGGNALKFYASVRLDIRRIGAIKERDEVIGNQTRVKVVKNKLAPPFKQVEFDIMYG
                     EGVSKTGELIDLGVKAGVIEKSGAWFSYDSQRIGQGRENAKAFLKENPDIAAKIEAA"
BASE COUNT          499 a          710 c          766 g          445 t
ORIGIN      
        1 tatatagtcg agagtggtca ctgcttcggg gtccagtccc ggggctttga tccggaccgg
       61 cgttgcttcc aacagcgtcg gtccactggt ttgatcctgg cagccccgcc gggattcgga
      121 cccggacctc tccgcgtgta acagcgagcg tcctaccgtt agaccacggg gcacctagag
      181 ccgattaagg gccgctacgt cctgtcacgg gattcgcgta gcggcccttc ctgtatgttc
      241 tcgccccgcg cgccggtcgg aaaacgccgg ggctttcgcc ctcctagtca tgattagtct
      301 ccttatcgtg tccaaagcgt aatcgggatt ctgcgacttg tcaacgattg tctacggaat
      361 ttcgtagaca ttcgcactat ggcgttgaca gaggtctacg gattgactat gttccagcca
      421 atcgggatcc ttccgcacgg aggcgaatag ccatgaacac gaaagcgaac gagggctttg
      481 gggcgaccga gcccaaagat gatgggaagc gcgagcgttc gactatcgag tttccctaca
      541 tggggcttga agatgcggtg gtgatcgcga agggaatcca cgaaacgacc ggcgcggggg
      601 tgtgccagca cgaccagctc gccgctgcca ttggcatgag catgaacagc agcggctatc
      661 gcatgcggct ttccgctgcg cggctgtttg gcttcattga aacggaccga gccgcaggcg
      721 gcgtgcgtct gaccgatctg gggcaaatgg tcgttgacag cacgcgcgag cgcgctgcca
      781 aagccaaggc cttcttgaac gtcccgctct ttaagcggct attcgagacg aagcgcggcc
      841 agttactccc gccacctgcg gctctagagc gcgaaatggc cagcatgggt gtctcgcaaa
      901 agcagacgga gcgtgctcgg caggtgtttc agcggtctgc ggaggtcgcc ggcttcttcg
      961 aaatggatcg gtcgcgtctg atcatgccgc cgggcgtgag tgacaatggt ccggcgccaa
     1021 ccgacgaaaa acccgaacag aagaatgaag gcccttcggg cggcggtggg ggtggcggtt
     1081 ctctgccgcc gggagtcgat ccaatcatcc aagggcttct ggcgcgcctc cctaagtcgg
     1141 gcgacgtatg ggccgagact gatcgaaagc tatggctcca gcttctcgaa ggtagcttta
     1201 agatcatcta caaagacaag gccgagagcg ccccagtgtc ttaggacact gcggctactc
     1261 acttaggaca ctccgcatgg actccggaca gtgcctggcc tacaaaaaag aacatattgc
     1321 gaactgagaa caaatagggt acattggctc atcgtcgatt gcgggcggct agaagccctc
     1381 tcgttgtcga tgccccgaat ccccgccata aggagcgtga tatgagccag cctgccctgc
     1441 gtctcgtcga aggatcctcc atggataagt caaaggccct ctctgccgcg ctcacgcaaa
     1501 tcgagcgcca gttcgggaag ggctcggtca tgcggctggg caagaacgac aaggcgatgg
     1561 acatcgaggc catctcctcg ggctcgctcg ggctcgacat tgcgctcggc attggcggct
     1621 tgccgcgcgg gcggatcgtc gaaatctacg ggccggaatc gtcgggcaag accacacttg
     1681 cgctgcacac cgttgcggaa gcgcagaaga agggcggcat ctgcgccttc atcgatgccg
     1741 agcacgcgct cgatgtggtg tatgcgcgca agctgggcgt caacaccgac gatctcctga
     1801 tctcgcaacc ggacgcgggc gagcaggcgc tggaaatcgc cgataccctc gtgcgctcgg
     1861 gcgcaatcga tgtgctggtc gtcgattcgg tcgcggcgct cgtgccgcgc gccgagctcg
     1921 aaggcgagat gggcgacgca cagcccggca gccaagcgcg gctgatgagc caggctctgc
     1981 gcaagctcac cgcctcgatc aacaagtccc gcaccatggt gatcttcatc aaccagatcc
     2041 gcatgaagat cggcgtgatg tacggctcgc cggaaacgac aagcggcggc aacgcgctca
     2101 agttctatgc ttcggttcgc ctcgacatcc gccgcatcgg cgcgatcaag gagcgcgacg
     2161 aggtgatcgg caaccagacg cgcgtaaagg tcgtgaagaa caagctcgca ccgccgttca
     2221 agcaggtcga gttcgacatc atgtatggcg agggggtgtc gaaaaccggc gaattgatcg
     2281 acctcggcgt gaaagccggg gtgatcgaga aatcgggcgc gtggttctct tatgacagcc
     2341 agcgtatcgg gcaggggcgc gagaacgcca aagccttcct gaaggagaat ccggacattg
     2401 ccgccaagat cgaagcggcg
//
LOCUS       DASRBJ010000195         5029 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_226977,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000195 DASRBJ010000000
VERSION     DASRBJ010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5029
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226977"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..268
                     /locus_tag="VE968_05395"
     CDS             <1..268
                     /locus_tag="VE968_05395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008829531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51296.1"
                     /translation="LYDHTVFVTYSLCFMMLLLAASSAIGLASDAVASLAWFVPPVHM
                     YRQLRGTYGLGKASAVWRTAVLTIFAFIAISLFASLLVMVGAFE"
     gene            complement(271..2226)
                     /gene="ftsH"
                     /locus_tag="VE968_05400"
     CDS             complement(271..2226)
                     /gene="ftsH"
                     /locus_tag="VE968_05400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020817846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HZU51297.1"
                     /translation="MNDKDKKPGNPWTRNLLIWAGVLFALVLFVQMIDGGSRAQAGQS
                     MAYSDFVHQVDDGNVRAVTIATGSSGNNAIAGKLASGEEFHTIAPSDANVSDKLIQKG
                     VAVQVKAEEQSSIWLYMLYNSLPFLLILGISFFVMRQMQKNAGSGAMGFGKSRARMLT
                     EKQGRVTFADVAGIDEAREELQEIVEYLKDPGKFARLGGKIPKGALLVGPPGTGKTLL
                     ARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKSAPCIVFIDEIDAVGRH
                     RGAGLGNGNDEREQTLNQLLVEMDGFEANEGIIIIAATNRPDVLDPALLRPGRFDRQV
                     VVPRPDIDGREQILTVHMKKVPLAPDVDARVIARGTPGFSGADLANLVNEAALLAARK
                     GKRLVAMQEFEEAKDKVLMGTERKSMVMTEDEKRMTAYHEAGHAIVALHEPASDPIHK
                     ATIIPRGRALGMVMRLPERDSYSYHRDKMYANLAVSMGGRVAEEVIFGYDKVSSGASS
                     DIQYATQLARDMVTRWGMSDALGPLQYAEPEEEVFLGYSVNRQRQMSNETAQQIDKEI
                     RRIVDEGYARAKHLLDDHRDQLETLAQALLEYETLSGDEIKKVIAGEPVDRGGSKGPS
                     IPAAGSSIPKAKRPKPGAIGGPAAAGA"
     gene            complement(2441..4270)
                     /locus_tag="VE968_05405"
     CDS             complement(2441..4270)
                     /locus_tag="VE968_05405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 domain-containing protein"
                     /protein_id="HZU51298.1"
                     /translation="MRHSRWLVFAAAVVVVPQAAGLAAQPTPAASTASNAEDSRLTAF
                     LDAEFAQDLKLGPQLATRLGIKEGEDKLDDISDAAQLQRLEARRASVARMRAQFDRNK
                     LSPRGQTNYDIWETELQRMELQYKYRRCQPPFYSFLYSVHSQLPDFMINTHTVQDAAD
                     MRAYNARLRAIPAVLDTAIAQTRLSDAAGIRAPRFEVERVIDGSKVIISGEPFEPGKD
                     SPLWADAKTKVGRLQSAGKLSAPEAAALLADTKAALLALKPAYGRVIASEQAELASAP
                     SGRVGAISLPGGAEWYAAALKLNTTLDLTAAQIHQIGLDEVKRIEAEQDALARRAGFK
                     DHNAYYADRARRFPPQPWTDALRAEYLRKANETVAHNRALLPARFYNLPEYRAEVVRE
                     PSFSEVAGGAAHASGPSPDGTRPGRVYVHLLGKTEDPALLTDLMCHEGIPGHVMAGDI
                     QVRQTNTPKFRRAGGYVAFNEGWALYAEQLCKEMGAYPDIASDFMHLDQEHFRAARLV
                     VDTGIHALGWTEQQAVDYMINTGRVSPDEARSEVRRYITLPGQATGYKIGMLKIMELR
                     HRAESALGAKFDVKAFDDLIISDGSQPLPVLERRVEDWIASRK"
     gene            complement(4337..4750)
                     /locus_tag="VE968_05410"
     CDS             complement(4337..4750)
                     /locus_tag="VE968_05410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013836384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HZU51299.1"
                     /translation="MEAQDEKGASAAGLIDEKIANLADWRGVTLGALRRLIKEADPEV
                     LETVKWRKPSNPGGVPIWEHSGILCTGEIYKDKVKLTFARGASLKDAMGLFNASLDGG
                     TRRAIDIHENDQIDASAFKALIREAVAANMAAKRG"
     gene            complement(4760..>5029)
                     /locus_tag="VE968_05415"
     CDS             complement(4760..>5029)
                     /locus_tag="VE968_05415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51300.1"
                     /translation="TQQEWKSAVHERSNEIVYMPSDAPREIVRRLIAKAVRRLATEGE
                     PELRGRELDQLVEALRKGEVSTVRGVRCDGSRGWRFTQARRRSDR"
BASE COUNT          924 a         1609 c         1439 g         1057 t
ORIGIN      
        1 cctctacgac cacaccgtgt tcgttaccta ttcactttgc ttcatgatgc tgctcctcgc
       61 agcctcctcg gcgatcggac tggcttcgga tgccgttgcg agcttggcct ggttcgtgcc
      121 ccccgttcac atgtatcgac agcttcgcgg cacttatggc ctcggcaagg cgagcgccgt
      181 gtggcgcacg gcagtactca cgattttcgc gttcatcgcg atctcgctgt tcgcaagcct
      241 actcgtgatg gtgggcgcct tcgagtagga tcaagcccct gcggccgctg gaccaccaat
      301 cgcgccgggc ttcggccgct tggccttcgg aatggacgag cccgcagcgg gaatggacgg
      361 gcccttcgat ccgccacggt cgacgggttc accagcaatg actttcttga tctcgtcgcc
      421 cgatagcgtc tcatattcga gtagagcctg ggcgagcgtc tcgagctggt cacgatgatc
      481 gtcgagtagg tgcttggccc gcgcatagcc ttcatcaacg atccggcgaa tttccttgtc
      541 gatctgttgt gcggtctcgt ttgacatctg ccgctgtcgg ttcaccgaat atccgagaaa
      601 aacttcctcc tcgggctcgg catattgaag cggcccgaga gcgtcggaca taccccaacg
      661 cgtcaccatg tcgcgcgcga gctgggtcgc atattggatg tcgctcgacg cacccgaaga
      721 aaccttgtcg tagccgaaga taacttcctc ggcgacgcgc ccacccatgg aaacagcgag
      781 gttggcgtac atcttgtcac ggtgatagct gtagctgtct cgctccggga gacgcatcac
      841 catgccaagc gcgcgaccac ggggaatgat cgttgcctta tggatgggat ccgacgcagg
      901 ctcgtgaagc gcgacaattg cgtgtccggc ttcatgatag gcagtcatgc gcttctcatc
      961 ctcggtcatg accatggact tgcgctcggt gcccatcagc accttgtcct tcgcctcttc
     1021 gaactcctgc attgcgacca gccgcttgcc tttgcgcgcg gcaaggagcg cagcctcgtt
     1081 cacgagattg gcaaggtccg cacctgaaaa gccgggcgta ccccgcgcaa tgacccgagc
     1141 atcgacgtca ggcgcaagcg gcactttctt catgtggaca gtgaggatct gttcgcgacc
     1201 atcgatatcg gggcgcggaa ccacgacctg ccggtcgaag cgacccggtc ggagaagagc
     1261 cggatcgagg acgtccggcc ggttcgtcgc ggcgatgatg atgatgcctt cattcgcctc
     1321 gaacccatcc atttcgacga gaagctggtt aagcgtctgc tcgcgctcgt cgttgccgtt
     1381 tccaaggcca gcaccacgat gacgtccaac cgcatcgatc tcgtcgatga agacgatgca
     1441 tggtgccgat ttctttgcct ggtcgaacat gtcgcgtacc cggcttgcac cgacgccaac
     1501 gaacatttcg acgaagtccg aacctgaaat tgtgaagaag ggaactcctg cctcgccggc
     1561 gatcgcccgt gcaagcagtg tcttgccggt ccctggcggt ccgacgagaa gggcaccctt
     1621 cgggatcttg ccgccaagtc gcgcaaactt cccagggtcc ttcagatatt caacgatctc
     1681 ctggagctcc tcgcgcgctt cgtcgatacc agcaacgtcc gcgaaggtga cacggccctg
     1741 tttttccgta agcattcgag cgcggctctt gccgaacccc atcgctccag acccggcatt
     1801 cttctgcatc tgccgcatga cgaagaaact gattccaagg atcagcagga acggcagcga
     1861 attgtacagc atatagagcc aaatgctcga ttgctcctcg gccttcacct ggacggcaac
     1921 gcccttttga atgagcttgt ccgagacgtt cgcatcgctt ggcgcaatcg tgtgaaattc
     1981 ttcgccgctc gcaagctttc cggcaatggc attattgccg ctcgaacccg tggcaatcgt
     2041 taccgcgcgg acattcccat cgtcgacctg gtgcacgaaa tcggaatagg ccatcgactg
     2101 gccggcttga gcgcggcttc caccatcgat catctgcacg aacaggacga gcgcgaacag
     2161 cactcctgcc cagatgagca ggttccttgt ccatgggttg cccggcttct tgtctttgtc
     2221 gttcatcgct cgtctttcgc gggcaaagag cccttcgctc ctaaaatagg cgaattggct
     2281 tcaataacaa tgcgagcctt agaacagggt gaacgtgcca gccccaaatc ggggcgtttg
     2341 gggggtagaa tgaccgctcg acttcaagaa cccgttcttg atcagagaaa gcggcccggc
     2401 accgtcgccg agccgccttt cctgccttgc gaaccctcac ctacttgcga gaggcgatcc
     2461 aatcctcgac gcggcgctca agcacgggca gtggctgaga gccatcgctg ataatgaggt
     2521 cgtcgaaagc cttcacgtcg aacttggccc ccagcgcact ttcggccctg tgtcgaagtt
     2581 ccatgatctt gagcatgccg attttgtagc cggtcgcctg acccggaagc gtaatgtaac
     2641 gccgcacttc cgagcgtgcc tcgtccggcg acactcgacc ggtgttgatc atgtagtcga
     2701 ccgcctgctg ctcggtccag ccaagggcgt ggattcccgt gtccaccacc aggcgggctg
     2761 cgcgaaaatg ctcctggtca agatgcatga agtccgaagc gatgtccggg taagcgccca
     2821 tttccttgca caattgctcg gcgtagagcg cccatccttc gttaaaggcg acatagccgc
     2881 ccgcccggcg gaacttcggc gtattcgtct gccgaacttg aatgtcccca gccatcacat
     2941 gtccgggaat tccctcgtgg cacatgaggt cggtaagcag cgccgggtct tccgtctttc
     3001 caagcaggtg aacgtagaca cgcccgggcc gagtgccgtc gggacttgga ccagaggcgt
     3061 gcgccgcacc cccggcgacc tcgctgaagg atggctcacg aacgacctcc gcccggtatt
     3121 ctggaaggtt gtagaagcgt gccggcagaa gtgcccggtt atgcgcaacc gtttcattgg
     3181 ccttccgaag atattccgcg cgcagcgcat cggtccaggg ttggggagga aagcggcgcg
     3241 cccggtcggc gtaataggca ttgtgatcct tgaagcccgc ccgacgcgcg agcgcatcct
     3301 gttccgcttc gatgcgcttt acctcgtcaa gcccaatttg gtgaatttgc gcggcggtta
     3361 gatccagcgt cgtgttgagc ttcaaggcag cggcatacca ttcagcaccg cctggaaggg
     3421 agatcgcacc gacgcggccg ctcggcgcag acgcaagctc agcctgctcc gatgcaatca
     3481 ctcggccgta ggcaggcttc aatgcgagca gcgccgcctt ggtgtcggca agaagggcgg
     3541 ccgcttccgg tgcgctcagc ttcccagccg actggagcct tccaaccttt gtctttgcat
     3601 ctgcccacag cggcgagtcc ttaccgggct cgaacggctc accgctgatg atcaccttgc
     3661 tgccatcgat cacccgctca acttcgaacc gaggcgcgcg aatgcctgca gcatcagaga
     3721 gcctcgtctg tgcaatcgcc gtatcgagca cggcgggaat ggcgcgcaga cgtgcattgt
     3781 aggcgcgcat gtcggctgca tcctgcaccg tgtgcgtgtt gatcatgaaa tccggtagct
     3841 gcgagtgcac cgagtagagg aatgagtaga atggcggctg gcatcggcgg tacttgtact
     3901 gaagctccat ccgctgaagc tcggtttccc aaatatcgta atttgtctgg ccgcgcggcg
     3961 agagcttgtt gcggtcgaac tgtgccctca tgcgggcgac gctcgcgcga cgagcttcga
     4021 gacgctgaag ctgcgcggca tcgctgatat catcgagctt gtcctcgcct tccttgatcc
     4081 caagtcttgt ggcgagctgt ggcccaagct taaggtcctg cgcaaattca gcgtcgagaa
     4141 atgcggtcag gcgcgaatcc tccgcattac tcgcagtgga agccgccggt gtcggctgcg
     4201 ccgcgagccc ggccgcctgc ggaaccacga cgacagccgc agcgaaaact aaccaacgtg
     4261 aatgacgcat tctgaccctc ccttggacgc gggcacccta gtcagcactg acgcgaaggt
     4321 gaagggttgc gcgaacctag cctcgttttg cggccatgtt ggccgcgact gcttcgcgga
     4381 tcagtgcctt gaaggcactc gcgtcgatct gatcattctc gtgaatgtcg atcgcgcgcc
     4441 gcgttccgcc gtcgaggctg gcgttgaaca accccatcgc gtccttcagt gaagcgcccc
     4501 tcgcgaacgt cagcttcacc ttgtccttgt agatctcacc cgtgcacaga atgcccgaat
     4561 gctcccagat cggaactccg ccgggattgg agggcttgcg ccatttgacc gtttccaaga
     4621 cctccggatc ggcttctttg atcaggcgcc gcagcgcccc gagcgtgacg ccccgccagt
     4681 cagccaagtt cgcaatcttc tcgtcgatga gccctgcagc actcgcgccc ttctcgtctt
     4741 gagcctccac gtgcatctcc tacctgtcgc tccggcggcg cgcttgagtg aagcgccatc
     4801 cccggcttcc gtcacaacga actcctcgca ccgtcgagac ctcccccttt cttagcgcct
     4861 cgaccagctg gtcgagttcg cgtccgcgaa gttcgggctc accctccgtc gcgagccggc
     4921 gaacggcctt cgcgataagt cgccgcacga tttcgcgcgg agcatcgctc ggcatgtaca
     4981 cgatctcgtt gctcctctcg tgaaccgcgc ttttccattc ctgctgggt
//
LOCUS       DASRBJ010000196         7593 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_374725,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000196 DASRBJ010000000
VERSION     DASRBJ010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7593
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374725"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1721)
                     /gene="glmS"
                     /locus_tag="VE968_05420"
     CDS             complement(<1..1721)
                     /gene="glmS"
                     /locus_tag="VE968_05420"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007709913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HZU51301.1"
                     /translation="MCGIVGIVGKSDVAQRLFDGLKRLEYRGYDSAGICTIEDGELVR
                     RRAEGKLDNLARELAAHPLHGCTGIAHTRWATHGAPTVGNAHPHIVGPVALVHNGIIE
                     NFKPLRDELIAEGRTFESETDTEVVGHLVARAIERGASPKEAVAAVLPRLVGAFALAI
                     LFRDHPDLVIAARRGAPLTVGYGEGENYLGSDALAVAPWTQRIAYLDDCDWAVVRRES
                     IEIFDKDNRPVERPVVESGASSAPVDKGNYQHYMQKEIFEQPIVVAQTLQSYVRPFEG
                     EIALPVADAELGDVKRLTIVACGTSYYAGLVAKYWIEQFARVPVDIDVASEFRYREPV
                     LEPGGLALFISQSGETADTLAALRHARSQGQRIAVVVNVPTSSMAREADLLLPTHAGP
                     EIGVASTKAFTCQLAVLAALSANLARAKGRLTHEEEREIVGHLQEAPAALNAALGHDD
                     EIAGMAHLIAPARDVLYLGRGPDYPMALEGALKLKEISYIHAEGYAAGEMKHGPIALI
                     DAQTPVIVLAPSGPLFEKTVSNMQEVRARGGKIVLISDGKGIAEAGEGCMATIEMPNV
                     HPLIAPLV"
     gene            complement(1828..3183)
                     /gene="glmU"
                     /locus_tag="VE968_05425"
     CDS             complement(1828..3183)
                     /gene="glmU"
                     /locus_tag="VE968_05425"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0006048 - UDP-N-acetylglucosamine
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HZU51302.1"
                     /translation="MKDNPRFAVIILAAGQGTRMRSATHKVLHAIAGRSLLLHLLDRV
                     DALGAERKVIVLGKGREQVEAALAGKEVTVALQAEQNGTGHAVAQAREALAGYNGPVI
                     ILYGDTPFVEAATLRRMLERLNAPDLPGIVVLASVPEDPLNYGRIILGEGDRIAKMVE
                     FKDATDDERAVRLCNSGMMAVQSADLFRWLGKVGNDNAAGEYYLPDIVNIAAREGRAA
                     VVIECDPYEASGVNSRAELAQLELEWQRRRRQRALDEGATLIDPQSVWFAYDTELGRD
                     VMIEPNVVFGPGVQIEDEVVVHAFSHIEGGRIGRKASIGPFARIRPGTELGAATKVGN
                     FVEIKKSKVDQGAKINHLSYVGDASIGAKANIGAGTITCNYDGYRKYGTMVGTGAFIG
                     SNTALVAPVSIGDGAIVGAGSVITRDVEADSLAIERNEQKGVAGWAKRFRERMTRKAA
                     E"
     gene            complement(3466..3897)
                     /locus_tag="VE968_05430"
     CDS             complement(3466..3897)
                     /locus_tag="VE968_05430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013934682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HZU51303.1"
                     /translation="MAMQTTGDNAEGEPMMDINTTPLIDVMLVLLIMFIITIPVQTHA
                     VKLDLPANNQNNPPPINTVKNILSVNARDQVLWNGQPVTMTQLRQYLDTTQQMNPIPE
                     LHLQPDATARYEVVDEVLAVTKQAHVQKMGFVGNEYYMNTF"
     gene            complement(3910..4398)
                     /locus_tag="VE968_05435"
     CDS             complement(3910..4398)
                     /locus_tag="VE968_05435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007705979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HZU51304.1"
                     /translation="MAMSVGQDSGDEDVPMSDINTTPLVDVMLVLLIIFLITVPVVIQ
                     TVPVKLPKVRYEPTTTKPENVSLSVKNGPGGTCEVYWNLTKVTQQDLLKRAVQKLEDQ
                     IKKVGGVQNINEDNMPEAHIRGDINTQYKCIGAAIITMQEAGFQRVGFISEPPPNTGV
                     RE"
     gene            complement(4467..5294)
                     /locus_tag="VE968_05440"
     CDS             complement(4467..5294)
                     /locus_tag="VE968_05440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HZU51305.1"
                     /translation="MQAAPAAAGSNPYGLIPALQQGGVIAISVFSILVLMSIFSFYIL
                     FTKLMQQQKIISQGRKVRSSFWNSPNLREASTKLEGRSAYRSIVDDALLAQDQHGKLT
                     DPIDQHDWMANSLARSQGAIGARLGEGLAFLATVGSTAPFIGLFGTVVGIYRALIKIG
                     AAGQASIDAVAGPVGEALIMTALGLVTAVPAVLAYNWLIRRNKSIMEDLAAFTNDLHG
                     YLMSDGAVKPRLGGTTGPAVKSTAQTKSGTAPTQPGSEPLRTGRTPTGAQASPTTAK"
     gene            complement(5339..6010)
                     /locus_tag="VE968_05445"
     CDS             complement(5339..6010)
                     /locus_tag="VE968_05445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HZU51306.1"
                     /translation="MSYAQRKEISGNRTLAIILVALIQFGLGYAIVTGLAYNVIKKAS
                     ENLKTFDVEEKPPPPEPPPPPPKDMPKVPPPPVQPPPLVRVNTPPPPTIQTVVSPAPP
                     PPYIPPVVAAPPAPPPPPPPRKVQSAQSAKGDLRTLFSADDYPAAAQAAGAEGTAQAE
                     LTIGPDGRVIGCNLTRSTGNSSLDSATCNILRRRAKFTPARDSSGNATTDTVTTPPIV
                     WRLEG"
     gene            complement(6212..6637)
                     /locus_tag="VE968_05450"
     CDS             complement(6212..6637)
                     /locus_tag="VE968_05450"
                     /EC_number="4.1.2.25"
                     /EC_number="5.1.99.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011950967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004150 - dihydroneopterin aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006760 - folic acid-containing compound
                     metabolic process [Evidence IEA];
                     GO_process: GO:0046656 - folic acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HZU51307.1"
                     /translation="MSDSEARLVGLIPDHLQIRSTRILLESLEVRADIGFHEFEIGAP
                     QRLLVTVEVWLEDEAVPTVDDPFRAWNYDFLRTEVVTVAASRRWNLQETLAQAIFEKV
                     AAFRGIRALRLRLSKPDVYPEAHGVGVEIASFRGLWPER"
     gene            complement(6634..7362)
                     /locus_tag="VE968_05455"
     CDS             complement(6634..7362)
                     /locus_tag="VE968_05455"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZU51308.1"
                     /translation="MADRTAIVTGTGRRVGAEIARALLKDGWAVVAHVRRETDEVPPG
                     AVKVVADLAEVGCREAIFRGAAALPPVRLLVNNAARFAFDAFGDFNVEEFDRHMAVNV
                     RAPIMLIEELAARHEAGDVLAINILDSKLEAPNPDFLSYTLSKEGLAALTKLAAQALA
                     SRGIRVNGIAPALMLRSNGQTDENYRAMHANNPLRRGVTPNDVIAAIRYLVAAEAVTG
                     EVITIDSGQRFMRLARDVQFLEGE"
     gene            7451..>7593
                     /locus_tag="VE968_05460"
     CDS             7451..>7593
                     /locus_tag="VE968_05460"
                     /inference="COORDINATES: protein motif:HMM:NF018624.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1285 domain-containing protein"
                     /protein_id="HZU51309.1"
                     /translation="MSLAELQKLIAARRLPPVDQWNPQHCGHSGMRIARDGTWYHEGE
                     PIRR"
BASE COUNT         1495 a         2301 c         2284 g         1513 t
ORIGIN      
        1 acgagaggtg cgatcagggg gtggacgttt ggcatctcga tggttgccat gcatccctcg
       61 cccgcttcgg caattccttt gccatcactg atgagaacga tcttgccgcc acgcgcccgg
      121 acttcctgca tgttgctgac cgtcttctca aagagcggcc cggacggagc aagaacgatc
      181 acgggcgttt gtgcgtcgat cagcgcgatg ggaccatgct tcatctcacc ggcagcgtag
      241 ccctcggcat ggatgtagct gatttccttc agcttcagcg ctccttcgag agccatcggg
      301 taatcaggtc cgcggccaag atacaagacg tcacgtgccg gagcgatgag gtgcgccatg
      361 ccggctatct cgtcgtcatg accaagtgcc gcgttcaacg ccgcaggcgc ttcctggagg
      421 tggccaacga tctcccgctc ttcctcgtgc gtcagtcgcc ctttcgcacg agcaagattg
      481 gccgagagcg cggctagaac cgccagctga caagtgaatg ccttcgtcga cgcaacgcca
      541 atctccggtc cggcatgagt cggcaacagg agatcggcct cgcgcgccat tgagctcgtg
      601 ggaacattga cgacgacagc tattcgctga ccttgtgagc gagcgtggcg cagtgccgcg
      661 agcgtgtcgg ccgtttcacc agactggctt atgaacagtg ccagaccgcc tggttcgagg
      721 accggctcgc gatagcggaa ctcgcttgca acatcgatgt cgacgggaac gcgggcgaac
      781 tgctctatcc aatatttggc gacgaggccg gcgtaatagc tcgtcccaca cgcaacgatg
      841 gtgaggcgct tgacatcgcc gagttcagca tcggccactg gaagcgcgat ctcaccctcg
      901 aatggccgaa cgtaggactg gagagtttgg gcaacgacga tcggttgctc gaagatctcc
      961 ttttgcatgt aatgctggta attgccctta tcgaccggag cagacgatgc acccgattca
     1021 acgacaggac gctcgaccgg ccgattatcc ttatcgaaaa tctcgatgct ttcgcggcgc
     1081 acgactgccc agtcgcaatc gtccagatag gcgatccgct gcgtccaggg cgcaaccgcg
     1141 agcgcgtccg acccaagata attctcgcct tcgccatatc cgacggtgag cggcgcgccg
     1201 cgacgtgcag caatgacgag atcgggatgg tcacgaaaga ggatcgcaag cgcaaaggcg
     1261 ccgacaagcc gtggcagaac cgccgcaacc gcctccttgg gcgatgcgcc acgctcgatc
     1321 gcgcgcgcta caagatgtcc gacgacctcg gtgtccgtct cgctttcgaa cgtccgccct
     1381 tcggcgatga gctcgtcgcg aagaggcttg aagttttcaa tgatcccatt gtgcacgagc
     1441 gcgacgggtc caacgatgtg cgggtgcgca tttccgaccg ttggtgcccc gtgcgtcgcc
     1501 cagcgggtgt gggcaatgcc cgtgcagcca tggagcgggt gtgcagcaag ctcacgcgcg
     1561 agattgtcca acttgccttc cgcacggcga cgaacgagct cgccgtcctc gatcgtgcag
     1621 atcccggcag aatcatagcc gcggtactca agacgcttca ggccatcgaa cagccgctgc
     1681 gcaacatcgc tcttgccgac aattccaaca attccgcaca tcgatcgact gtcctcgaga
     1741 aaggccgtca gataagcggc cgatcgccct ttttttagag aaacgcgctg aataaaggat
     1801 gcatcacgtc gagcaagtcg accgggtcta ttccgcagcc ttacgcgtca ttcgttcacg
     1861 gaagcgctta gcccagccgg cgactccctt ctgctcattg cgctcgatcg cgaggctgtc
     1921 cgcctcgaca tcacgcgtaa tgacggatcc agcacccaca atcgccccgt caccaatgct
     1981 gacgggtgca accagcgcag tgttcgaccc gatgaacgca ccagtcccga ccattgtccc
     2041 atatttgcga tacccgtcgt aattgcacgt gatggtgccc gccccgatat tcgccttcgc
     2101 tccaatcgac gcatcgccga cataggacag atgattgatc ttggcgccct gatcgacttt
     2161 ggacttcttg atctcgacga aattcccaac cttcgttgca gcgccgagct ccgtgccggg
     2221 ccttattctt gcgaacggcc cgatactcgc ctttcgccca atgcggccac cttcgatgtg
     2281 gctaaaggcg tgaaccacca cttcgtcttc aatttggacg cccggcccga acaccacatt
     2341 gggctctatc atgacgtccc ggccaagctc ggtatcgtag gcgaaccaga cactttgagg
     2401 gtcgatcaga gtggcgccct cgtcgagcgc gcgttgacgt cggcgcctct gccattcgag
     2461 ctcaagctgc gctagctcgg cacggctgtt cactcctgat gcctcataag ggtcgcactc
     2521 gatcaccacc gcggcgcggc cttcgcgtgc cgcaatgttg acgatatcgg ggaggtaata
     2581 ttctcctgca gcattgtcgt tgccgacttt gccaagccag cgaaaaagat cagcggattg
     2641 aacggccatc attcccgaat tgcacaagcg cacggcgcgc tcgtcgtcag tcgcatcctt
     2701 gaactcgacc atcttcgcaa ttcgatcgcc ctcgccgagg atgatgcgtc catagttcaa
     2761 cggatcttca ggaacggacg caaggacgac aatccctggc agatcgggag cgttcaggcg
     2821 ctcgagcatg cgccgcaatg tggctgcttc gacgaagggc gtatcgccat agaggataat
     2881 gactggtcca ttgtagccgg cgagcgcctc tcgggcctgc gcgacggcgt gcccagttcc
     2941 gttctgctcc gcctggagcg ctaccgtcac ctctttgccc gcaagagctg cctcgacctg
     3001 ctcacggcct ttgccaagaa cgatcacctt gcgctccgct ccgagcgcat cgacacgatc
     3061 aagcaggtga agcagcagcg aacgccccgc gatcgcgtgg agcaccttgt gcgttgcgga
     3121 ccgcatgcgc gttccctggc cagccgcaag aatgattacc gcgaaacgag gattgtcttt
     3181 catgggggtt gcattggcat ggcacagcag cgagcgccag agagccgata acgcgaatga
     3241 aacggggcgg cccatcgcgc cggaccgccc ctggaacgca ccgcgaaggg ggataagcgg
     3301 tgaccaggag cgaaccgctc attgcgcaat tagttccatc gaccgcaagg ccagtgcggt
     3361 gctttgcttg gaacagatcc gctcatccgc ggaacaggac ggaagacaca aaaagggcgg
     3421 cacctcgtcg aggggccgcc cggaccttct ttgagcggga tgcccttaga aggtgttcat
     3481 ataatattcg ttgccgacaa agcccatctt ctggacatgc gcctgcttcg taacggcaag
     3541 cacctcgtcg accacttcgt accgtgccgt ggcatcgggc tgcaggtgaa gctccgggat
     3601 cgggttcatc tgctgcgtgg tgtcgagata ttggcgcagc tgagtcatgg tgacgggctg
     3661 cccattccaa agcacctggt cgcgcgcgtt cacggacagg atgttcttga cggtgttaat
     3721 cggcggcggg ttgttctggt tgttcgccgg aagatcaagc ttaacggcgt gagtctggac
     3781 cgggatggtg atgatgaaca tgatgaggag aaccaacatg acgtcgatga gcggcgtcgt
     3841 gttgatgtcc atcatcggtt cgccttcggc attgtcgccg gtggtctgca ttgccatcgg
     3901 tcgtaactcc tactcgcgaa cgccagtgtt cggcggcggt tcggaaatga acccgacccg
     3961 ctggaacccg gcctcctgca tggtgatgat cgcagcgcca atgcacttgt actgagtgtt
     4021 gatgtcgccg cggatatgcg cttctggcat attgtcttcg ttgatgttct ggacgccacc
     4081 aaccttcttg atctggtcct caagcttctg gactgctcgc ttgagcaggt cctgctgggt
     4141 gaccttcgtc aggttccagt aaacctcgca cgttccgccc ggcccattct tgacgctgag
     4201 ggagacgttc tctggtttgg tggtggtcgg ctcgtagcgc accttcggca gcttcacggg
     4261 gacagtctgg atgacgaccg gcaccgtgat gaggaagatg atcaagagca ccagcatcac
     4321 gtcgacgagc ggcgtggtgt tgatgtcgga catcgggacg tcttcgtcgc ccgaatcttg
     4381 tcctacgctc atggccatgg gttaaacatt ctccttgccc gcgtgggcgg gcgtcgcggg
     4441 ccggcatgaa gccggcccgc tggtcattac ttggcagtcg tcgggcttgc ctgggcgccg
     4501 gtcggggtac gaccggtgcg caggggctcg ctgcccggct gcgtcggagc ggtgccgctc
     4561 ttcgtctgcg cggtgctctt gacggccgga cccgtcgtgc cgccgaggcg tggcttcacc
     4621 gcgccgtcgg acatgaggta gccgtgaaga tcgttcgtga aggccgcaag gtcctccatg
     4681 atcgacttgt tgcgacggat cagccagttg taggcaagca ctgccggaac ggcggtgacg
     4741 agaccaagag cggtcatgat gagcgcttca ccgaccgggc ccgcaacggc gtcgatcgag
     4801 gcttgtccgg cggcgccgat cttgatcaac gctcgataga taccgacgac cgtaccgaac
     4861 agaccgatga acggcgcggt tgaaccaacg gtcgcgagga aggcgaggcc ttcaccgagg
     4921 cgggcaccga tcgcgccctg gcttcgcgca aggctgttcg ccatccaatc atgctgatcg
     4981 atgggatcgg tcagcttgcc gtgctgatcc tgcgcgagaa gtgcatcgtc aacgatcgaa
     5041 cgataggcgc tacgcccttc gagcttcgtc gaagcctcac gaaggttggg cgaattccag
     5101 aagcttgaac ggaccttgcg gccctggctg atgatcttct gctgctgcat cagcttcgtg
     5161 aagaggatgt agaatgagaa gatcgacatc aaaacgagga tcgagaacac cgagatggcg
     5221 atgacgccac cctgctgaag ggcggggatc aggccgtatg ggtttgatcc ggctgcggcg
     5281 ggtgctgctt gcatgctgtg cgttcctttt gaaaaccgag ttcaaaaaat tgaggtgttt
     5341 agccttccaa ccgccagacg attgggggcg ttgtaactgt gtccgttgtc gcattgccgc
     5401 tactgtcacg cgcgggcgtg aacttcgctc ggcgacgaag aatgttgcac gttgccgaat
     5461 cgagcgaact gttgccggtc gagcgggtca ggttgcaccc gatcactcgt ccgtcaggtc
     5521 cgatcgtcag ctcggcctgc gccgttcctt cagcgcctgc agcctgagcg gcagcaggat
     5581 aatcgtcagc actgaagagc gtacgaaggt cgcccttcgc gctttgagca gactgcacct
     5641 tgcgcggagg aggcggcggc ggcggcgctg gcggagcagc aacaaccggc ggaatataag
     5701 ggggtggcgg cgccggcgag acgacggtct ggatggtcgg cggcggcggc gtgtttacac
     5761 gcaccagcgg tggtggctgg accggcggcg gtggcacctt cggcatatcc ttaggtggcg
     5821 gtggcggtgg ctcgggtggc ggtggcttct cctcgacgtc gaacgtcttt agattttcgc
     5881 tcgccttctt gatgacattg tacgctagac ccgtgacaat ggcgtaaccg agcccgaact
     5941 ggattagcgc gaccaggatg atcgctagcg ttcggttacc gctgatctct ttgcgttggg
     6001 cgtaagacat taacccgcag ttctcctcga cacgccgtgg gaaacccacg gtctaaccgg
     6061 gcactaggcg cccacccgcc ttggttaatc cgcccatgta ctaagattac accgtcggca
     6121 ggcgcgcctc cttataactg cgtcaaaggc cgtgcaacgg atttgttcca caaccggaaa
     6181 gcacgaaact tttacgcctg tttcgaacga tctagcgctc gggccagagt ccgcgaaacg
     6241 acgcaatctc gacgccgacg ccatgggcct ccggatagac gtcgggcttg gagagccgca
     6301 gacgaagagc ccgaattccg cggaaagccg ccactttctc aaaaatcgcc tgcgcaagtg
     6361 tctcttgcaa gttccaccgg cgtgatgcgg caaccgtcac aacttcggtc cggaggaagt
     6421 cgtagttcca ggcccgaaat gggtcatcga cagttggaac agcctcgtct tcgagccata
     6481 cttcaaccgt caccagcagg cgctgcggtg cgccaatctc aaattcatgg aagccaatgt
     6541 cggcacgcac ttcaagtgat tcgaggagga ttcgtgtcga acgaatctgg aggtggtcgg
     6601 gtatcaaccc aacgagacga gcttcactgt cactcattcg ccctccagga actggacgtc
     6661 tcgggcaaga cgcatgaagc gctggcctga atcaatggta atcacttcgc cggtgactgc
     6721 ctcggccgcg acgagatagc ggatcgcggc gatgacatca ttcggggtga cgccccttcg
     6781 cagcggatta ttcgcgtgca tcgcgcgata gttctcgtca gtctgcccgt tggagcgaag
     6841 cataagcgcc ggcgcgatcc cattcaccct gatgcctcgt gaagccagtg cttgcgcggc
     6901 aagcttggtc aacgccgcca gtccttcttt ggacaaggta tagctgagaa aatcggggtt
     6961 cggcgcctca agctttgaat caaggatgtt gatcgcgagg acatcgccgg cttcatgccg
     7021 cgccgcaagt tcctcgatca gcatgatggg cgcacgaaca ttgaccgcca tgtgccgatc
     7081 aaattcttca acgttgaaat cgccgaaggc atcaaacgcg aatcgcgcgg cattgttgac
     7141 gagcaagcga acaggcggaa gcgctgcggc ccccctgaaa atcgcctcgc ggcaaccaac
     7201 ctcggcgagg tcggccacga ccttgactgc acccggaggt acctcgtccg tttcgcggcg
     7261 aacgtgcgcg actacagccc agccgtcctt gagcaatgcc cgggcaatct cggcgccgac
     7321 gcgcctgccg gtgcccgtca cgatagcggt acgatcagcc atgcagcgaa ctcctgcctt
     7381 gagcagcgcc gcgaagcaat ccaatgacga aagggtgccg gaaagccata agccaatcga
     7441 tattcgcgcg atgagcctcg cggagcttca gaaactcatc gcggcccgcc gcctgccacc
     7501 cgtcgatcag tggaatccgc agcattgtgg ccattcagga atgcgtattg cacgcgacgg
     7561 tacttggtac cacgagggcg agcccattcg ccg
//
LOCUS       DASRBJ010000197         2841 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_628930,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000197 DASRBJ010000000
VERSION     DASRBJ010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2841
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_628930"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VE968_05465"
     CDS             <1..255
                     /locus_tag="VE968_05465"
                     /inference="COORDINATES: protein motif:HMM:NF012774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HZU51310.1"
                     /translation="RIAGMDAPETHPPRCMREAQLGLAATAKLEQLLESGTVTMGPAT
                     RDKYGRELRQVFVNGVDVAQTMIAAGLASSYEGKKRQSWC"
     gene            complement(265..972)
                     /locus_tag="VE968_05470"
     CDS             complement(265..972)
                     /locus_tag="VE968_05470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51311.1"
                     /translation="MMRAIDRMALSIGAGALGILFAAPAQAAGPSYPSRAPIAEYMMA
                     SPAAEIALARSAAPPSISGNAEVLVLGPNGYTTAVKGTNGFVCLVERAWDAELGNPIF
                     WNPHVRGPDCLNPAAARSVLPHFLERTRWALAGLSIAEMHERTKAELAAKTYVMPEPG
                     AMAFMLSKEQFLSDDGTHHWMPHLMFFVAGSSDADAGANLPGSPVLHAYPSAPDPIST
                     FLVPVGTWSDGTPAEMN"
     gene            complement(1176..1913)
                     /locus_tag="VE968_05475"
     CDS             complement(1176..1913)
                     /locus_tag="VE968_05475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010408784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009036 - type II site-specific
                     deoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BglII/BstYI family type II restriction
                     endonuclease"
                     /protein_id="HZU51312.1"
                     /translation="MFDRLIAAGFQVEFASHAKAILGVDFPDVVNDLEAALLQVRLPI
                     TEILGSGGGEAQLTQRLRRGFYDLQWRKRNVEIKKVIDHVERESISHEIDHFHPTDEG
                     TFALEIEWNNKDPFFDRDLENFKRLHAEGVISVGSIVTRGSELQSQLKSMIREWAERE
                     QILSFDDLRRRGFKRPTERQEAIVAARVDRQESFAEAWSAMFFADKYEMATTHWSKLQ
                     DRLARGVGNPCPLLLIGLPPSIVDMNG"
     gene            complement(1913..2548)
                     /locus_tag="VE968_05480"
     CDS             complement(1913..2548)
                     /locus_tag="VE968_05480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017664803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MT-A70 family methyltransferase"
                     /protein_id="HZU51313.1"
                     /translation="MFSPGDDLLITARGQRFGTILADPPWQFQNRTGKVAPEHKRLNR
                     YGTMTIDEICALPVQEIAADPSHLYLWVPNALLPWGLQVMDAWGFKYVSNIVWEKVRK
                     DGEPDGRGVGFYFRNVTELLLFGTRGKNARTLDPGRSQVNVMRTRKREHSRKPDEQYK
                     IIESCSWGPRLEMFSRGKRPGWTVWGNQADESYKPDWPTYNYNSGLAIAAE"
     gene            complement(2622..>2841)
                     /locus_tag="VE968_05485"
     CDS             complement(2622..>2841)
                     /locus_tag="VE968_05485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51314.1"
                     /translation="PAGALLLKNGELFLFCSKLGDQLHYDPHPVSLRKGYMPGAADEA
                     CGFRKWSIAILENGRPKVLRSFEAHSEK"
BASE COUNT          550 a          862 c          877 g          552 t
ORIGIN      
        1 cggatcgccg gcatggatgc gcccgagacc cacccgccgc gctgcatgcg ggaagcgcag
       61 ctcggcctcg ccgcgacggc caagctcgag cagctgctgg aaagcggcac ggtgaccatg
      121 ggccccgcca cccgcgacaa atacggccgc gagctcaggc aggtgttcgt caatggcgtc
      181 gacgtcgcgc agaccatgat cgctgccggc ctggcgagca gctatgaagg gaagaagcgc
      241 cagagttggt gctagctccc ctccctaatt catctccgcc ggtgtcccgt ccgaccaggt
      301 cccgacgggt accaggaaag tcgagatcgg gtccggagcg ctcgggtaag cgtgcagcac
      361 cggggagccc gggaggttgg cgcccgcgtc ggcatcggat gagccggcga cgaagaacat
      421 caggtgcggc atccagtgat gcgttccgtc gtcggacagg aactgctcct tcgacagcat
      481 gaatgccatc gcgcccggct cgggcatcac ataggtcttt gcagcgagct cggccttcgt
      541 gcgctcgtgc atctcggcga tcgacaggcc cgccagcgcc cacctggtcc gctcgagaaa
      601 atgcggcagc acgcttcgcg ccgcggccgg attgaggcag tcgggcccgc ggacgtgcgg
      661 gttccagaag atcggattgc cgagctccgc gtcccacgcc cgttcgacca ggcagacgaa
      721 cccgttcgtg cccttgacgg cggtggtgta gccgttcggg ccgaggacga ggacctcggc
      781 attgccggaa atcgagggcg gcgcggcgct cctcgccagc gcgatctccg ccgccgggct
      841 cgccatcatg tactcagcaa tgggagctcg gctgggatag gacggacccg ccgcttgtgc
      901 aggcgccgcg aacagaatgc cgagagcgcc agcaccgatg cttaatgcca tccggtcgat
      961 cgcgcgcatc atcgtccctc ccgaagaggt cttgaggcaa gggtccgtca gggtgggtgt
     1021 ggagtcaagg tgctggcccg agtgatcccc gacgcgaagg cacgaaggcc caaaggcatg
     1081 atacgaaaaa gccgccccgg agggcggcct atccgatggg gcgagccccg ccggttggaa
     1141 agtcctcata acgcgaatag ggaatgaaac cagctttatc cattcatgtc gactatcgag
     1201 ggcggcaagc cgatcagcag tagcgggcaa ggattgccaa ccccgcgagc caagcggtcc
     1261 tgcaacttcg accagtgcgt tgttgccatc tcatacttgt ctgcaaagaa catggccgac
     1321 catgcttctg cgaagctttc ttgccggtct acgcgggcag ctacgatagc ttcttgcctc
     1381 tcggtaggtc gtttgaatcc acgtcggcgc agatcatcga atgaaaggat ctgttctcgt
     1441 tccgcccatt cgcggatcat tgatttgagt tgcgactgca gctcggaccc gcgagtcaca
     1501 attgagccca cactgattac gccttcggca tgcagtcgtt tgaagttctc aaggtcgcga
     1561 tcaaagaacg ggtccttgtt gttccactcg atctcgagag cgaatgtccc ctcgtcagta
     1621 gggtggaagt gatcaatctc gtggctgatc gactcccttt cgacatggtc gataaccttt
     1681 ttgatttcga cgtttcgctt gcgccactgc agatcgtaga agccgcgtcg cagtcgttgc
     1741 gtgagttggg cctcaccgcc gccgcttcct aaaatttcgg taatcggcag gcgcacttgt
     1801 aagagcgctg cttcgagatc gttcacaaca tcagggaaat cgacgccgag gatcgccttt
     1861 gcgtgcgagg cgaattcaac ctgaaaaccg gcggcgatta ggcggtcgaa cattattcgg
     1921 ccgcgatagc caatccactg ttgtaattgt aggtcggcca atcgggcttg tagctttcgt
     1981 cggcctggtt gccccagaca gtccagccgg ggcgcttgcc gcggctgaac atttcgaggc
     2041 gcgggcccca gctgcaggat tcgatgatct tgtactgctc gtcgggcttg cggctgtgct
     2101 cgcgcttgcg ggtgcgcatg acgttcacct ggcttcggcc gggatcgagc gtgcgcgcgt
     2161 tcttgccgcg cgtgccgaac agcaggagct cggtgacgtt gcggaagtaa aagccgacgc
     2221 cgcgcccgtc cggctcgccg tccttgcgca ccttctccca cacgatgttg gagacatatt
     2281 tgaagcccca ggcgtccatc acctgaagac cccacggcag cagcgcgttg ggcacccaca
     2341 ggtagaggtg cgacgggtcg gcggcgatct cttgcaccgg cagcgcgcaa atctcgtcaa
     2401 tcgtcatcgt gccgtagcgg ttgagccgct tatgctccgg cgcgaccttt ccggttcggt
     2461 tctgaaactg ccacggcgga tcggcgagaa tcgtgccaaa tctctgcccg cgagcggtga
     2521 tcaggaggtc gtcgccaggg gagaacataa cgagatctta tcgtcagaat ttgaaatatc
     2581 gcaacagcaa agttggtcta atcgccagaa cattgacgat gtcatttctc ggaatgcgct
     2641 tcaaacgacc gcagcacttt tggtctgcca ttttcgagta tggctatgct ccacttcctg
     2701 aacccgcaag cttcgtctgc ggcgcctggc atatagccct tgcggagtga cacaggatgc
     2761 ggatcgtaat gcagctgatc accgagcttg ctgcaaaaaa gaaagagctc accattcttg
     2821 agtagcaacg caccagcggg a
//
LOCUS       DASRBJ010000198         2391 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_483048,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000198 DASRBJ010000000
VERSION     DASRBJ010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2391
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_483048"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..835)
                     /locus_tag="VE968_05490"
     CDS             complement(<1..835)
                     /locus_tag="VE968_05490"
                     /inference="COORDINATES: protein motif:HMM:NF018210.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:1904680 - peptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SbmA/BacA-like family transporter"
                     /protein_id="HZU51315.1"
                     /translation="MSHNTITGAAKTPAFRQEFSALLRALRAFLSTLWSTEGRYVLTV
                     LTIMIVLVICATVVAQVALNAWNKPFYNAIQARDLSEFAYQSLVFLVIAGSLLVLNVA
                     QAWLREMIKVKSREWLTRDLFAQWLEPGRALRLAYAGEIGVNPDQRIQQDTSQLTELA
                     AELGIGLLQSLLLLVAFLGVLWELSGAITLPLGSLSLTIPGYMVWCAILFAAVGSWLA
                     WRVGGPLVGLNARRFQRESGLRFALVQINQQAENIARHQREPSEKRRLGIELDNVLAV
                     MR"
     gene            complement(986..1927)
                     /locus_tag="VE968_05495"
     CDS             complement(986..1927)
                     /locus_tag="VE968_05495"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: protein motif:HMM:NF009201.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HZU51316.1"
                     /translation="MTQVQRRLAGTSRAREMSRRRMLLGLIGANIMGSLSPALFAEGF
                     AAARIDGFYHLMDVDCLRERRLPNLLDAVKALGFAGVNITYPFKQDVLALLDSVDPEA
                     AQIGAVNTVAIAADGRTTGYNFDRPGWRRGFEETLGADSARGATVVQVGAGGAGRAVA
                     FALMDLGIALLVLHDRDIERARALCSDIATYFGPSRCRLADNLESEIAVAHGVVNATQ
                     TGMRGFPGNPVPASALKASHWAADVIYTPVETEFIKCAAAKGARVLGGGGMCVHQAVE
                     AFRLFTGMTPDVARLHEAFAAAYEAREAAYGQAAEAR"
     gene            complement(1961..>2391)
                     /locus_tag="VE968_05500"
     CDS             complement(1961..>2391)
                     /locus_tag="VE968_05500"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HZU51317.1"
                     /translation="QNSMWSLVLVYPTFTIPFCSWLLMGFFKAMPVEIEEAAIVDGCS
                     LFGAFLKMTVPLSLPAILTVVIFTFTLTLQEFVYALTFISSSAQKPITLGVATDLIRG
                     DVFFWGEIMAGALLASVPVAIAYNVFLDRFISGITGGAVK"
BASE COUNT          518 a          769 c          706 g          398 t
ORIGIN      
        1 cgcgcatgac cgccaggacg ttatcgagtt caatgccgag gcgccgcttt tcgctcggct
       61 cgcgctgatg acgggcaatg ttctcggcct gctgattgat ctgaacgagc gcgaagcgca
      121 gacccgattc tcgctgaaac cggcgcgcat tcaatccgac gagcggaccg ccaacccgcc
      181 aggcgagcca cgaacctacg gcggcgaaca gaatagcgca ccacaccatg taaccgggga
      241 tggtcaggct gaggctgccc aacggaagcg taatggcgcc cgacagctcc caaagcacac
      301 cgaggaaagc gacgaggagc agcaaggact gaagcagccc gatgccgagc tcggctgcaa
      361 gctccgtcag ctgactcgtg tcttgttgga tgcgctggtc gggattgacg ccgatctccc
      421 ccgcataggc gagtcgcaga gcgcgtcccg gctccaacca ttgagcgaac aagtcccgtg
      481 tcaaccactc gcgcgatttg accttgatca tctcgcgcaa ccacgcttgc gcgacgttca
      541 gcaccaaaag gcttcccgca attacgagaa agacgaggct ttgatacgcg aattcggaaa
      601 ggtcccgagc ctggatggca ttgtagaaag gcttattcca ggcattgagc gccacctgtg
      661 cgacgaccgt cgcgcaaatg acgagcacga tcatgatggt gagcaccgtg agcacgtaac
      721 gcccttctgt cgaccaaagc gtggacagaa aagcgcgcaa cgcacggaga agcgcagaaa
      781 attcctgcct gaaagccggc gtcttcgcag cgccggtgat cgtattgtga ctcatcgcga
      841 gaccctgtcg aacaaggcgg gcgttacgtc atctcgacct atatgggcgt cggaggctcg
      901 gccggcatcg gagcggagcc ggacgcctgt ggcctcctcg gtcagtagct cagcttggta
      961 agcgctatca gccggcgtgc ttttctcatc gggcttcagc ggcctgacca taggctgcct
     1021 cacgcgcttc gtacgcggcc gcgaaagctt catgcaggcg cgcgacatca ggagtcatac
     1081 cggtgaacag ccggaacgct tcaaccgcct gatgcacgca cattccgccc ccaccgagca
     1141 cgcgtgcccc tttggcggcg gcgcatttga tgaactcggt ctcgaccggt gtgtagatca
     1201 cgtcggccgc ccagtgcgag gccttgaggg ccgaggccgg gacgggattg ccgggaaagc
     1261 cgcgcatacc cgtttgcgtc gcattgacga cgccgtgggc aaccgcaatc tcgctttcga
     1321 gattgtccgc gagccggcac cgcgacggac caaaatacgt cgcgatatcg ctgcaaagcg
     1381 cacgtgcgcg ctcgatatcg cggtcgtgca ggaccaatag cgcaataccg agatccatca
     1441 aggcgaatgc caccgcgcgg ccggcgcccc cagccccgac ctgcacgacc gtggccccgc
     1501 gtgcgctgtc tgctccgagc gtctcctcga agccccggcg ccagcctggc cggtcgaaat
     1561 tatagccggt cgtccggccg tccgcggcga tcgcaaccgt attgacggcg ccgatctgcg
     1621 cggcctccgg atccacagag tcgagcagcg ccagcacgtc ctgcttgaat ggatatgtga
     1681 tgttgacgcc ggcgaacccg agcgccttga ccgcatcgag aagattgggc agccgccgct
     1741 ctctcaggca atcgacgtcc atcagatgat agaagccgtc gatccgcgcc gccgcgaaac
     1801 cttcggcgaa cagcgccggc gacagcgaac ccatgatgtt ggccccaatc aaaccgagta
     1861 acatccggcg tctgctcatc tctcgcgctc tgctcgtgcc tgcgaggcgc cgctgaacct
     1921 gtgtcataga ccggcgtgtg caattgctcc cgagactgcg ttatttgact gcgccgcccg
     1981 tgatgccgga gatgaaacga tcgagaaaca cgttataagc gatcgccacc ggaacgctgg
     2041 cgagcaatgc gccggccatg atctcgcccc agaagaacac gtcgccgcga atgagatcag
     2101 tcgccacccc aagcgtaatc ggtttctgcg ccgacgagga tatgaaggtc agcgcgtaaa
     2161 cgaattcctg caacgtcagc gtaaatgtaa aaatgacgac cgtgagaatt gccggcaatg
     2221 acagcggcac tgtcatcttg agaaacgccc cgaacaagct gcagccgtcg acgatcgccg
     2281 cctcctcgat ctccaccggc atagccttga agaaccccat caacagccag gagcagaacg
     2341 ggatcgtgaa ggtcggatag accagcacga gcgaccacat cgaattctgc a
//
LOCUS       DASRBJ010000199         3047 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_325361,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000199 DASRBJ010000000
VERSION     DASRBJ010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325361"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(419..634)
                     /locus_tag="VE968_05505"
     CDS             complement(419..634)
                     /locus_tag="VE968_05505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51318.1"
                     /translation="MTILGGTHFSWHGQQMPSSSRAGGCFLTIFILLGFFFGLSIRNP
                     LRGTLIGLGIGIVLAIITWLVDRNRSR"
     gene            693..902
                     /locus_tag="VE968_05510"
     CDS             693..902
                     /locus_tag="VE968_05510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51319.1"
                     /translation="MQSLFIHGRVALADASDLMDRYGDDAGFEAAIRAERSRDAGNVT
                     GFCHWRQIERVIATLSSEEIQGTVH"
     gene            1033..>3047
                     /locus_tag="VE968_05515"
     CDS             1033..>3047
                     /locus_tag="VE968_05515"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HZU51320.1"
                     /translation="MAKSPRLMSGRVSSASAARLLCAAALLVLAPDELLAQDSPQTPS
                     PQQPSQRAANDQTEPDPNAPLAPLPDIGVAWPTIDATQTGTGAEGPQPTLATPGGKRT
                     AQSIIAGVGNIRYEVVVEGLTNISGSEDLLRAFRNQSSLEAERKHPANAAQIGRRATA
                     DADLLVQLLRSQGYYDAEVDPRTEKAGDELQVILSAAPGPQYRFASVELPGLQKAGRD
                     EAKLRAAFGVNDGDPVIASDVIAGVLALSQALGEEGFASAKLGEQVIEVNHQSHLASL
                     VLPVDPGPVARFGAIHVSGRPRFSAHHVATIARFRSGDPFQRSKLDDLRRALIQTTLI
                     ANADIKVVPVDKGRVVDIDVRLEPAPEHTIAGQLGYGTGQGASAEVDWTDRNFVNPEG
                     ALTLRAIGGTMEQLLGAQLRFSNFLQRDQTLNTQLTISHQVFAAYKAKTVDLAANIER
                     LSNFIWQKKWTWSYGGEWLATDERGVFTSAGLKDTKTFLIAAVPLQLGYDGSDNLLDP
                     TRGFRLSARVSPEISFHGGHRTYVRAQFDASAYQPASESVVLAGRVRFGTIVGATLFD
                     LAPSRRFYSGGGGSVRGYGYQQLGPKDQDGDPIGGRGLAEFGLETRIRLKSLGGNLGL
                     VPFFDGGSLSSKATPSLSNWRYAAGLGVRYYSSFGPIRVDLGVPLNR"
BASE COUNT          583 a          946 c          915 g          603 t
ORIGIN      
        1 gcattccgaa gctccggctt tggacgggga ggatggctcc gccgatcttt tggagccgct
       61 ggaactcgac gatgttcttg ccgagatcag tcccgattct cgcgtggtcc gacttttcga
      121 ccgcactgcc atgccgacgc ccggtcagct tcagtctcga atcgatgatc atctcggcca
      181 gcgccgatcg acatctccgc acgatgcgtc tcacgcgctt tctgaagcgc tcaccgaact
      241 tcgccgatca cttcgctaat catcccgcag tcggtttccg ctcctgcgca actactgatc
      301 gcgatcccgg tcttgcgggt acaccttagg gggcatgcga tttcgtggca gaaccgtcaa
      361 cgcctcctca ttggcgcgac cttgctagat caaccgccat ggcgcgccat cgcaaaaact
      421 agcgagagcg gttcctgtcg actagccacg tgatgatcgc cagaacgatg ccgataccaa
      481 ggccgatcag cgtgcctctc aatggatttc tgatcgacag cccgaagaag aatccgagca
      541 ggatgaagat ggtgaggaaa cagccgccgg cgcgggaaga gcttggcatt tgctgcccat
      601 gccaactgaa atgcgttccg ccaaggatgg tcaacgactt gttgacgatg atcgtccgca
      661 gtcaggcaac cgacttcgga taagaggctc gcatgcaaag ccttttcatt cacggccgcg
      721 ttgcgcttgc cgatgcgtct gacctcatgg atcgttatgg agacgatgct ggcttcgaag
      781 cagcaatccg cgcggagcgc agccgtgatg ccggcaatgt caccggtttc tgtcactggc
      841 gccagatcga acgcgtgata gcaacgctga gcagcgaaga aatccagggc accgttcact
      901 gagcatttgc tcggcagccc gaggggggga gctgccgagg tccgctagag ccggtcgtct
      961 tttccttgca cttgaaaatc actcgttcga ccggcttgca aatatcggac gtactggcgc
     1021 cattcaggag cggtggctaa gtctccccgc ttgatgagtg ggcgggtttc aagcgcgagc
     1081 gccgcgcggc tgctgtgcgc ggccgcttta ctcgtgctcg cccccgacga actactggcg
     1141 caggattcgc cgcagacgcc gtcaccgcaa cagccatcgc aacgcgccgc gaatgatcag
     1201 actgagcctg atcccaacgc gccactcgcc cctttgccgg acatcggcgt cgcttggccg
     1261 acaatcgatg cgacgcaaac cggtacaggc gctgaggggc cgcaaccgac acttgcgacg
     1321 ccggggggga agcgcaccgc gcagtcgatc atcgcgggtg tcggaaacat ccggtacgag
     1381 gtcgttgtcg agggtctcac gaatatctcc ggctcggagg atttgcttcg tgcgttccgc
     1441 aaccagtctt cgctcgaagc cgagcgaaag catcctgcga atgccgccca aataggtagg
     1501 cgggcaacgg ccgacgcgga cctcctggtg cagttgctgc gaagccaagg ctattatgac
     1561 gccgaggttg atcctcggac cgagaaagcg ggtgatgagc tacaggtcat cctaagcgcg
     1621 gctccgggcc cacaataccg ctttgcatcg gtcgaattgc cggggcttca gaaggcggga
     1681 cgcgacgaag cgaaacttcg cgccgccttc ggggtgaacg atggcgatcc cgtcatcgcg
     1741 tcggacgtga tcgctggtgt cctcgctttg tcacaggcgc tcggtgaaga aggatttgcg
     1801 agcgccaagc taggcgaaca ggtgatcgag gttaaccacc agtcgcacct tgccagcctc
     1861 gtcctgccgg ttgatcccgg accggtcgcc cggttcgggg ccattcatgt gagcgggcgc
     1921 cctcgattca gcgcgcacca tgtggcaacc attgcgcgtt tccggagcgg cgacccgttc
     1981 cagcgctcca agctcgatga cctccggcgg gccctcatcc aaacgaccct gattgccaat
     2041 gcggacatca aggtcgttcc cgtggacaaa ggccgcgtgg tcgatatcga cgttcgcctc
     2101 gagcctgctc ccgaacatac gattgctgga cagcttggct atgggaccgg gcaaggagcg
     2161 agtgcggagg tcgattggac cgaccggaac ttcgtaaatc ccgaaggtgc cctgaccctg
     2221 cgcgcgatcg gcggcacgat ggaacagctg ctcggcgcgc agctgaggtt ctcgaatttc
     2281 cttcagcgtg accagaccct caacacgcag ctcacgattt cccaccaggt tttcgccgcc
     2341 tacaaggcaa agacggtgga cctcgcggcc aatatcgagc ggctaagcaa ctttatctgg
     2401 cagaagaagt ggacctggtc ctacggtggc gaatggctcg cgaccgatga gcgcggcgta
     2461 tttacgagcg ccgggctcaa ggacaccaag acctttctca tcgccgccgt cccccttcaa
     2521 ctgggctacg atggaagcga caatctcctc gatccgacgc gtggctttcg cctgagtgca
     2581 cgagtcagcc ctgaaatctc gttccatggc ggtcatcgta cctatgttcg cgcccaattc
     2641 gacgcgagcg cctatcagcc cgcgtccgaa agcgtcgtcc tcgccggtcg agtgcggttt
     2701 ggaacgatcg tcggcgctac cctgttcgat ctcgctccgt ctcgtcgatt ctattcgggt
     2761 gggggtggtt ccgttcgcgg ctatggttac cagcagcttg gacccaagga ccaggacggg
     2821 gacccgattg gaggtcgagg actagccgag ttcggcctcg aaacgcgcat caggctcaag
     2881 tctctcggcg gcaatctggg tctggtgccc ttctttgatg gcggctcact tagcagcaag
     2941 gcaacgccct ctctgagcaa ctggcgctat gcggctggcc tcggcgttcg ctactactcg
     3001 agcttcggac ctattcgtgt cgatttggga gtgccgctca atcgcca
//
LOCUS       DASRBJ010000200         5394 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_532854,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000200 DASRBJ010000000
VERSION     DASRBJ010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5394
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_532854"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..994)
                     /locus_tag="VE968_05520"
     CDS             complement(<1..994)
                     /locus_tag="VE968_05520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003047399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HZU51321.1"
                     /translation="MFHLALPLLIGLIIVALAFDFLNGLHDSANSIATVVGTRLISPV
                     GAVGFAAFFNFAAYFLALKWPQLHNVADTIGKGLIDKDVVTPAVVFGALVGAMFWNVV
                     TWIKGIPSSSSHALVGGIIGAGVAHAGFPSIQWVGLNKTLIAIVLSPVLGLLVTMAIM
                     LLTSWLGVRASARGAERTFRGLHLVSSGTLSLSHGLNDAQKTMGLISVLLYSTGYLHG
                     HFAVPNWVALSCYVAMGLGTLTGGWRIIETMGTRITKLSQHQAFSASAGGSVMLFAAS
                     LLGVPVSTTHTMTGCVIGAGAARRASAVRWGVAGDVAIAWVITIPASAIVAALFY"
     gene            complement(1007..1648)
                     /locus_tag="VE968_05525"
     CDS             complement(1007..1648)
                     /locus_tag="VE968_05525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HZU51322.1"
                     /translation="MFNWFQRLLPKTSDFYAMFEAHAATLVAAANAMNRLVDGRAPAE
                     DQIEEIDRREHEADEVIRQVLRSVRQTFLTPFDRGAITSLIGAMDDAIDEMQSTARAI
                     DLYEIEAFEFEMKQMAGMILEQANLTAQAIPMLRNISDNGARIHSITEKVVRLEGNAD
                     DAHARGLKRAFQRLSDEPMKFMIAREMYKHLERITDAFEDVANEIDGIVVDHA"
     gene            2046..3917
                     /locus_tag="VE968_05530"
     CDS             2046..3917
                     /locus_tag="VE968_05530"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HZU51323.1"
                     /translation="MDFSTGSQVQSDDVGTVSTGSKAVHAPRFDVRTDSKRDDRLTEF
                     GKETLKDRYLLPGESYQDLFARVAAAYADDAAHAQRVYDYISQLWFMPATPVLSNGGT
                     GRGLPISCYLNSVSDSLEGIVGTWNENVWLASRGGGIGTYWGCVRGIGEPVGLNGKTS
                     GIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEIRKPSGDFNRKALNLH
                     HGVLVTDEFMEAVRDGSEFALKSPKDGSVRGKVDARSLFQKLVETRLQTGEPYIIFID
                     AVNKTMPKHHRDLGLKVSTSNLCSEITLPTGRDHLGADRTAVCCLSSLNLETWDEWNK
                     DKQFIEDVMRFLDNVLSDYIARAPDEMARAKYSAERERSVGLGVMGFHSFLQARGLPF
                     EGAMAKSWNLKIFKHIRAQVDQASMMLAKERGPCPDAADMGVMERFSCKMAIAPTASI
                     SIIAGGTSACIEPIPANIYTHKTLSGSFSIKNPYLERMLKEKSKDSHSVWSSILENGG
                     SVQQLDFLTQEEKDVFKTSFEIDQRWLLELAADRTPFIDQAQSLNLFIPADVDKWDLM
                     MLHFRAWELGIKSLYYLRSKSVQRAGFAGGVEADNTPELKEIQLAPSTDYDECLACQ"
     gene            3892..4122
                     /locus_tag="VE968_05535"
     CDS             3892..4122
                     /locus_tag="VE968_05535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51324.1"
                     /translation="MTSAWHVNDDTHLAPVRTGDHHLRFVLLEEARPPMKRALTLKNV
                     AKSAGTIVLCLLALDLVATLITLVIGAEFLKR"
     gene            4119..>5394
                     /locus_tag="VE968_05540"
     CDS             4119..>5394
                     /locus_tag="VE968_05540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010165268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HZU51325.1"
                     /translation="MIKHSAISLVALAFASIASAGYAQNPGAQALEKNFDALINPAEQ
                     TTWLQQMSSAPNQVGSPHDKANADMELALFKQWGWDAHIERFDVLYPTPISTTLELVS
                     PQHVTLGGQEPPVPGDPTSAETAGALPPYVAYQGDGDVTAPVVYVNYGMPEDYDALAQ
                     RGIDVRGKIVLARYGGGWRGLKPKLAQEHGAVGCLIYSDPADDSYAEADVYPRGGGRP
                     EAGVQRGSVADMPIYPGDPLTPGVGATPSAKRLTRAEAITILKIPALPISYGDASKII
                     ASLQGPLVTGKQRGALGLAYHWGGTDAVKVHLAVKSDWSLKPVYDVIATLRGSTYPDQ
                     WIIRGNHHDGWVFGASDPLTGQVALMNEAKALGALYRQGWRPARTIVYASWDGEEPGL
                     LGSTEWAEAHAAELKQKALLYINTDSNGRGFLR"
BASE COUNT         1103 a         1598 c         1650 g         1043 t
ORIGIN      
        1 agtagaaaag cgccgcgacg atcgccgacg cggggatggt gatgacccat gcaatggcaa
       61 catcaccggc aacgccccag cgaacggcgg acgcacgcct tgcggcacca gcgccgataa
      121 cgcagcccgt catcgtgtgc gtcgtcgaaa ccggaactcc aaggagcgac gccgcgaata
      181 gcattacgga tccgccggcc gacgcgctga acgcctggtg ctgcgagagc ttcgttatgc
      241 gcgttcccat cgtctcgatg atccgccagc cgccggtaag agtgccaagc cccattgcga
      301 catagcagct gagcgcaacc cagttgggaa cggcgaaatg cccgtggagg taaccggtcg
      361 aataaagaag gacgctgatc agccccattg tcttctgcgc atcgttgagg ccgtggctga
      421 gcgacagcgt tcctgacgac acgaggtgaa ggccacggaa ggttcgttcg gcgccgcggg
      481 cgcttgctct tactccaagc cagctcgtca gaagcatgat tgccatcgtc actagcagcc
      541 caagaactgg tgaaagcacg attgcgatca gcgttttgtt caagcctacc cactggatgc
      601 tcggaaagcc cgcgtgagca acgccggcgc cgatgatccc gccgacgagc gcgtggctcg
      661 aagaagaagg aattccctta atccaggtaa cgacgttcca gaacattgcg ccgacgagcg
      721 cgccgaagac gacggcgggg gtcacgacgt ccttgtcaat caggcccttg ccgatggtgt
      781 cggcgacatt gtgaagctgc ggccatttga gcgcgaggaa ataggccgca aagttgaaga
      841 atgcggcgaa ccccaccgct ccaacgggac tgatgagccg cgttccgacg accgtcgcaa
      901 tcgagttcgc cgaatcatga agcccgttca gaaagtcgaa cgccagcgcg acgataatga
      961 gcccgatgag caggggaagg gcgaggtgga acacgcgctc gatcgctcag gcgtggtcga
     1021 ccacgatgcc gtcgatctcg ttcgcgacat cttcgaaggc atcggtgatc cgttcgagat
     1081 gcttgtacat ctcgcgcgcg atcatgaact tcatcggttc gtccgagagg cgctggaaag
     1141 cgcgtttcaa gccacgggcg tgcgcatcgt cggcattgcc ttcgagccgg acgaccttct
     1201 cggtaatgct gtggatgcgc gctccattgt cgctgatgtt cctcagcatc gggatcgcct
     1261 gggcggtgag gttcgcctgt tcaaggatca tgccggccat ctgcttcatc tcgaattcga
     1321 acgcctcgat ctcgtaaagg tcgatcgcac gcgccgtcga ttgcatttca tcgatcgcgt
     1381 cgtccattgc accaatcagc gacgtgatgg cgccacggtc gaagggtgtc aggaacgttt
     1441 ggcggacgga ccgcagcacc tggcgaatga cctcgtcggc ctcatgttcg cgccgatcga
     1501 tctcttcgat ttggtcttcg gccggagcgc ggccatcaac cagccggttc atggcgtttg
     1561 ctgcggcgac gagtgtcgct gcatgcgcct cgaacattgc ataaaagtcg ctcgtctttg
     1621 gaagcaagcg ctggaaccag ttgaacatgg cgtcccctgt ttgtgcgggc gccgcgttag
     1681 tggagcaagg gcgtgacgac aactattgca cgggcaaaga gcgaccttgt ttgcgacccg
     1741 tcctgctgca ctgccgcaaa tccacaacat tttttggtta cgcaatgttt accccccttg
     1801 cgtccggcga cggttaaggc actatacgta gtagcagtcg agggggagca ctcaataact
     1861 ggtgttctgg tgcaggaatg attatattcc ggcagcggca aggctcgtcc ccgctttcca
     1921 cagggagcgg gggtgaaaaa gccccgtcga gcgcagaaga aggctaggat gtcggcatgg
     1981 ctccgagtcg aacaagtcag gaacaaacgg tcctcgacag gaccgatgag ggacggggaa
     2041 gcgcgatgga tttctcaacc ggcagtcaag ttcagagtga tgatgtcggc accgtttcga
     2101 cgggatcgaa ggcggtgcat gcgccgcggt tcgatgtcag gaccgattcc aagcgtgacg
     2161 atcgcctgac ggagtttggc aaggagactc tgaaggaccg gtaccttctt cccggcgaaa
     2221 gctaccagga cctcttcgcg cgcgttgccg ccgcctatgc cgacgatgcc gcccatgcgc
     2281 agcgtgtcta tgactatatc tcgcagctgt ggttcatgcc cgcaacgccg gtgctgtcga
     2341 atggcggtac gggtcgtggg cttccgatca gctgctatct caacagcgtt tcggacagcc
     2401 tcgaaggcat tgtcgggaca tggaacgaga atgtctggct cgcttcgcgc ggtggcggca
     2461 ttggcaccta ttggggctgc gtgcggggca ttggcgaacc ggtcgggctt aacggcaaaa
     2521 cgagcggcat cattcccttc gtccgcgtga tggacagctt gacgctggcg atcagccagg
     2581 gctcgcttcg acgcggatcg gcagcctgct accttgatat ttcccatcca gagatcgagg
     2641 agttcctcga aatccgcaaa ccttccggcg acttcaaccg caaagccctc aatctccacc
     2701 atggcgtgct ggtgacggac gaattcatgg aagcggtgcg cgacggtagc gagttcgcgc
     2761 tgaagtcgcc caaggacgga agcgttcgcg gcaaggtcga cgcgcgttcg ctgttccaga
     2821 agctggtcga aacccgcctc cagacgggcg agccgtacat catcttcatc gacgcggtga
     2881 acaagacgat gcccaagcat caccgcgatc tcggtcttaa ggtttcaaca tcgaacctct
     2941 gctcggaaat cactcttccg accggacggg atcatctcgg cgccgaccga acggcggtct
     3001 gctgcctgtc gtcgcttaac cttgagacct gggacgagtg gaacaaggac aagcagttca
     3061 tcgaggacgt catgcggttc ctcgacaatg tccttagcga ttatatcgcg cgtgcaccgg
     3121 acgagatggc gcgcgccaag tatagcgcgg agcgcgagcg ctcggttggt cttggagtga
     3181 tgggattcca ctcgtttctc caggcacgcg gcctgccatt tgaaggagca atggcgaaga
     3241 gctggaacct caagatcttc aagcacatcc gagcgcaggt tgatcaggcc tcgatgatgc
     3301 ttgcgaagga gcgaggaccg tgcccggatg cggcggacat gggcgtcatg gaacggttca
     3361 gctgcaagat ggcgattgct ccgacggcgt ccatctcgat tatcgcgggg ggtacgagtg
     3421 cgtgcatcga gccaattccg gcaaacatct acacccacaa gaccctgtcc ggcagcttct
     3481 cgatcaagaa cccttatctc gagcggatgc tcaaggaaaa gtcgaaggac agccactcgg
     3541 tgtggagctc gatcctcgag aatggcggaa gcgtccagca gctcgatttc ctcacccagg
     3601 aagagaagga cgtgttcaag acgagcttcg agatcgatca gcggtggctt ctggaactcg
     3661 ccgccgaccg aacaccattc attgaccagg cgcagtcgct caacctgttt atccctgccg
     3721 atgtcgacaa gtgggacctc atgatgcttc acttccgcgc gtgggagctt ggcatcaagt
     3781 cactttatta cctgcgttcc aagtccgttc agcgcgccgg cttcgcgggt ggcgtcgaag
     3841 ccgacaacac gcctgagctc aaggaaatcc agcttgcgcc aagcaccgac tatgacgagt
     3901 gcctggcatg tcaatgacga tactcatctt gctcctgtgc gcactggtga tcatcatctc
     3961 cggttcgtcc tacttgaaga agcgaggccg ccgatgaagc gcgcactgac tttgaagaat
     4021 gttgcaaaga gcgccgggac gattgtcctg tgtcttctcg cgctcgatct cgtcgctact
     4081 ctaatcaccc tcgtcattgg agcggagttc ctcaaaagat gatcaagcat tcggccatca
     4141 gccttgttgc actagcgttc gcctcgattg cttcagccgg ctacgcccag aacccgggtg
     4201 cgcaggcgct cgagaagaat ttcgatgcct tgatcaaccc tgctgaacag acgacctggc
     4261 ttcagcaaat gtcgtcggcg cccaaccagg ttggctcacc gcacgacaag gcaaatgccg
     4321 acatggaact ggcgctgttc aagcaatggg gctgggacgc gcatatcgaa cgtttcgatg
     4381 tcctttatcc aacgccgatt tcgacgacgc tcgagctcgt cagtccgcag cacgtcacgc
     4441 tcggcggcca ggagccgccg gttcctggcg acccgacatc ggccgagacc gctggagcac
     4501 ttccgcctta tgttgcctac cagggcgacg gcgacgtcac cgcgcccgtc gtctacgtca
     4561 attacggaat gcccgaggac tatgatgcgc tggcgcagcg cgggatcgat gttcgtggca
     4621 agatcgtgct cgcgcgctac ggtggaggat ggcgcggtct aaagccaaag cttgcccagg
     4681 agcatggcgc ggtcggctgc cttatctact cggatccggc cgatgacagc tatgctgaag
     4741 ccgatgtcta cccacggggc ggcggccgtc ccgaagcggg cgtgcagcgc ggctcggttg
     4801 cagacatgcc gatctatccg ggcgatccgc tgacgcccgg cgttggcgca acgccaagcg
     4861 ccaagcgcct gacgcgagcc gaggcgatca cgatcctcaa gatcccggcg cttccgatct
     4921 cttatggcga cgcgagcaag atcatcgctt cgctccaggg cccgttggtg acgggcaagc
     4981 agcgcggtgc gcttggcctt gcctaccact ggggaggtac tgacgcggtc aaggtccatc
     5041 tcgcggtcaa gtccgactgg tcgctcaagc ccgtttatga cgtgatcgca acacttcggg
     5101 gatcgaccta tcccgatcag tggatcattc gcggcaacca ccacgacggg tgggtgtttg
     5161 gcgcatccga cccgttgacc ggccaggttg cgctgatgaa cgaggcaaag gcgcttgggg
     5221 ctctctaccg ccagggctgg cgtccggcgc ggaccattgt ctatgcaagc tgggacggcg
     5281 aagagcccgg gctcctgggc tcgaccgaat gggcggaagc gcatgctgcc gaactgaagc
     5341 agaaggccct tctgtatata aacaccgatt ccaacggtcg ggggttcctg cgcg
//
LOCUS       DASRBJ010000201         2333 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_274703,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000201 DASRBJ010000000
VERSION     DASRBJ010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2333
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274703"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..519
                     /locus_tag="VE968_05545"
     CDS             <1..519
                     /locus_tag="VE968_05545"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZU51326.1"
                     /translation="LPSFLVKSRGFSITQMTIVATIGYAVQAVCALAYGRFSDWWTVS
                     GRSEAACRRWMMVASQGAATIAILGLSIAHSSLAIGLLLCLAGAASGSLSLNLYAVGQ
                     MFSGSRAAGTWMGFQNAIGNASGIFGPILTGFIVQRAGYDSAFLVTAAIAAAGALMWI
                     VAVPKIEPIDIG"
     gene            complement(532..1590)
                     /locus_tag="VE968_05550"
     CDS             complement(532..1590)
                     /locus_tag="VE968_05550"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HZU51327.1"
                     /translation="MFRTILWLSLVCTTAQLHAQGIGTITREDRAFSKLVPEGAAIHV
                     VAHDFTWAEGPAWISKDNVLLLSDPPKNRMYRWAPGESSASIFLEPSGGSESKGFREA
                     GSNGLKPAGKSLLLVADEGDRAIAVLDLRTKTKRLIATQYRGKRLNSPNDIAVASDGA
                     IWFTDPPYGLDGIDQSPAKQQTANRVYRIGRNGALIAEVSELRYPNGIAFSPDGRTLY
                     VSNSDPKNAVIIAWHLSGRGTLSARRVFADMNSLVAKGLPGLPDGMTVDERGDVWASG
                     PGGIHVFTPQGHELGLISTGTAISNCTFGGADRRTLYMTSTHLLVALRTNVRGAANIV
                     PTIPVPPYHVQSAGERRE"
     gene            1801..1944
                     /locus_tag="VE968_05555"
     CDS             1801..1944
                     /locus_tag="VE968_05555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51328.1"
                     /translation="MATTVAAPGQRRQSTRRAARARLLLPVLTTLLRVLPLLVMATNG
                     RVS"
BASE COUNT          446 a          664 c          726 g          497 t
ORIGIN      
        1 ttgccatcat tcctcgtcaa gtcgcgcgga ttctcgatta cgcaaatgac aatcgtagcg
       61 accattggtt atgccgtgca ggcggtctgt gctctcgcct atggtcgctt ctcggattgg
      121 tggaccgttt ccggtcgctc ggaagctgca tgccgccgct ggatgatggt cgcgagccag
      181 ggagcggcaa cgatcgcgat tctcggcctg tcgatcgcgc acagttcgct tgcgatcggt
      241 cttctgcttt gccttgctgg ggcggcgtca ggatctttgt cgctcaatct ctacgcggtc
      301 gggcaaatgt tcagcgggtc tcgcgctgca ggaacgtgga tgggtttcca aaacgcgatt
      361 ggcaatgcgt cgggtatctt cggaccgata ctcaccggct tcattgtcca gcgagcaggc
      421 tatgattccg ccttcctagt cactgcggct attgcagcag ctggcgcgct catgtggatc
      481 gtcgcggtgc cgaagattga accgatcgac atcggctgat ggaactaatc gttactctcg
      541 acgctcgccg gccgattgca catgatacgg gggaacaggg atagtcggaa cgatgttcgc
      601 tgcgccgcga acattcgttc gaagcgcaac gagcaggtgt gtcgatgtca tgtagagagt
      661 ccgcctatcg gcgccgccga acgtgcagtt cgagattgca gttccagtag aaatgaggcc
      721 aagttcatgc ccttgaggcg taaagacgtg tatgcctcct ggaccgcttg cccacacatc
      781 gccacgttcg tccacggtca ttccatcagg aagacccggc aagcccttcg cgacgaggga
      841 attcatatcc gcgaacacgc gccgggcaga aagcgtgccg cggcccgata ggtgccacgc
      901 aatgatgacc gcgttcttcg gatccgaatt ggagacgtac agggttcggc cgtcgggcga
      961 gaacgcaatg ccgttcggat atcgaagttc tgacacttcg gcgatcaacg cgccatttct
     1021 tccaatacga taaacgcgat tggccgtctg ctgctttgcc ggtgactgat cgatgccatc
     1081 gagaccataa ggcggatccg tgaaccagat tgcgccatca ctggcgacgg caatgtcgtt
     1141 gggcgagttg agccgcttgc ctcggtattg cgtcgcgatg aggcgcttgg tctttgtgcg
     1201 aagatcaaga acggcgatcg cgcggtcacc ttcgtcggca acgaggagaa gtgattttcc
     1261 ggccggtttc aacccattgg aacccgcttc ccgaaaaccc ttactctcac tgccgcccga
     1321 tggctccagg aagatgctcg ccgagctctc accgggagcc cagcgataca tgcggttctt
     1381 cggcggatcg ctcagcaaca ggacattgtc tttgctgatc cacgcaggac cctcggccca
     1441 tgtgaaatcg tgcgcaacca cgtggatggc cgccccttcg gggacaagct tcgaaaaagc
     1501 gcggtcttct ctggtgattg tgccgatacc ttgcgcgtgc agctgcgctg tcgtgcaaac
     1561 tagcgagagc caaaggatag tccggaacat ccaggaaatg tgccgcaaat cggcgctgcc
     1621 gaaaaggcaa tgaattgagc gacccggcca tttacgcggc cgggccgctc ggggctaacg
     1681 agctcgtcga tcaggagtgg ggagagggga cgacgagcac ggacttgcta agagctccaa
     1741 tctgtcggct acatgaacct tcttcccaaa tgctgccgaa ctaatgttgc gagctgttcc
     1801 atggccacca cggtcgcggc gccgggccag cgccgccaat caacgagacg tgcggcccgt
     1861 gctcgtcttc tgcttccggt gctgacgacg cttcttcgcg tgctgccgct tcttgtgatg
     1921 gcgacgaacg gccgcgtgtc gtgagcgttg cggacggctt gcggccgttc gcggcggacg
     1981 agacggattg gttgttgctc gcggggatcc aagttcagtc gaaggcgtcg atgcgtccgg
     2041 ctgtgcagtg gtcgactgga cagaaggatt gctgctgtcc gttgcggacg actgaggggt
     2101 tgcctgaggt tccgtcgtcg agacggattg cggcgttgtg ctttgacccg gtgcaccggg
     2161 ctcgcgagtc atggtggtct gagcaatggc gccacttgca atcaacgcga cgagagcgat
     2221 gacgactttc attggtttcc tccaggatcc gaaaggccgg ctccacagcg cgcgaggacg
     2281 cgagcgcgtt cctaatgctg atgacgacat cggcggccga agagactaat gaa
//
LOCUS       DASRBJ010000202         2697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_584872,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000202 DASRBJ010000000
VERSION     DASRBJ010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2697
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_584872"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            850..1011
                     /locus_tag="VE968_05560"
     CDS             850..1011
                     /locus_tag="VE968_05560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51329.1"
                     /translation="MIFDAQPFAALGLVRESGPGSFGPAAALAHMVERCRFRLNPRLF
                     SAGEEELQV"
     gene            complement(1125..1331)
                     /locus_tag="VE968_05565"
                     /pseudo
     CDS             complement(1125..1331)
                     /locus_tag="VE968_05565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207726.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
     gene            1620..1781
                     /locus_tag="VE968_05570"
     CDS             1620..1781
                     /locus_tag="VE968_05570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51330.1"
                     /translation="MDLNYLYQRHQISLFMAENGSTDQVRRVHGEFADLYAARIVDAR
                     QWRAPLRAA"
     gene            1781..1954
                     /locus_tag="VE968_05575"
     CDS             1781..1954
                     /locus_tag="VE968_05575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51331.1"
                     /translation="MQQPSRAEAADELREQAASCRRLARRARTNGGSSALKTVAEQFD
                     DDARRIDPFSERR"
     gene            1951..2109
                     /locus_tag="VE968_05580"
     CDS             1951..2109
                     /locus_tag="VE968_05580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51332.1"
                     /translation="MSIMSGTNKDAVPQSELDRYRIERVPADIFLWGGYRYSNARDAI
                     AAAKRNAK"
     gene            2459..2686
                     /locus_tag="VE968_05585"
     CDS             2459..2686
                     /locus_tag="VE968_05585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51333.1"
                     /translation="MKIEGSIRSNLISAITSVRRWEGRPVHKDTLTYWHAVLDHGRRS
                     IGEPVGELVAELESELVRAGKHRPTPSRSAD"
BASE COUNT          529 a          788 c          836 g          544 t
ORIGIN      
        1 cttcagcttg ggccaggcgc cgagggtttc gatccattgc tgctcgacga gctgatcgcg
       61 gaggcgacgg atttgatgcg cgcaagtctc agtccgatta attcgatacg gattgttccc
      121 gcagaacgat aagaggggtg agcagaagtg gcatcctaca cactcgaagc gactagcggc
      181 ggcggcttgt ccagatgaag tcgccactga cgacggcgca ggcgcacgcc gccgcttggt
      241 aagcgctcga tcgccgatac gccgacgttc tctggcatgc agcggatcac gaccacgcct
      301 tcatcgagtt gaggtgcacg acgcggctca cttcgttgga ctctgcgaag cggctgggtc
      361 gtcggtggcg ccagacccac tgacatcagc cctccgcgcc tgttcgtcga aatgatccgc
      421 gagcgcgttc atggagctgg ttccggcgcg ggtccgcgcc cgggcggcga ggcgacgaca
      481 cgccgccgcc tgattgcgca ggccctcggc accatcggaa gtatccggag aatttcagtc
      541 ggtggttggg cgtccaagcg cttggctcca tcgtcgaaag cgggagcgcg cgcgtgtctc
      601 tcagccccgc aaatgcctac aatcggattg ccgcgcgata tgttcttgta acagcttcct
      661 gggagatacg cgaaccaact ttagcccatt atttcgagca ccgcggcata tgccaccttg
      721 tcgaacggtc gaaaggactc ttcagattcg cggcgttcgg cgctcgcacg tagggaagcc
      781 cgtttgggct ggttctcctt gaatatcatc ttcatttgaa atcgatgcgg cttcagccgc
      841 tttcctcttt tgatcttcga tgcgcagccg ttcgccgcgc tgggccttgt ccgcgagagc
      901 ggaccaggca gcttcggacc ggcggcagcg ctcgcgcaca tggtcgagcg ttgccgcttc
      961 cgcctcaacc cgcgcttgtt cagcgcgggc gaggaagaat tgcaggtttg agctgcggac
     1021 gatcggccct gccaagtcta ttcgccctgt cggtcattcg cgggctcgga ctggagctcg
     1081 tcggtcgcgg gctgagcttc gctcgcttcc ggctgtgtcg actcttcggc gttcttgaga
     1141 ttgacggcgc tcatcttgcc gcgattgtct tgctcaatgt cgtagctaat gcgctggttc
     1201 tcgcgaaggc tgcgcattcc agcccgctcg acggcggtaa cgtggacgaa ggcgtcattg
     1261 ccgccgccat cgggtgcgat gaagccgtag cctttggatt cattgaagaa ctttacggtt
     1321 ccggtagtca tttggatttc cttctaaggc gaggccgcaa atcggctcgc ttcctgctag
     1381 gagcgaaaag agaaggaaaa ggagccgcaa agcgcccgaa taccgtcagt ttgcgactag
     1441 tagcagcggt atgcgtaggc gcattcccaa ataattgtaa gtcgtcatgg aaaataatct
     1501 tggcgctagg taaaatcatc tccgtgtggt aagcttcgtc atcgcgtgga ttttcttgcc
     1561 gtaggcccgc gcgactgaga gaccgaccgc gctcccgctt acgaggacgg gagcattcca
     1621 tggatctcaa ttatctctat cagcgacatc agatttcgct gttcatggcg gaaaacgggt
     1681 ccacggacca ggttcgccgg gtccacggcg agttcgccga tctctatgct gcgcgcatcg
     1741 tcgacgcgag gcagtggcgt gcgccgctgc gagcagcctg atgcaacagc cctcacgcgc
     1801 tgaagcggcg gatgagcttc gcgagcaggc cgcgtcgtgc cgaaggcttg cgcgacgagc
     1861 gcggaccaat ggcggttcgt cggcactcaa gactgtcgcc gagcaattcg atgacgatgc
     1921 acggcgcatc gacccgttca gcgaaaggcg atgagcatca tgtcaggaac caacaaggac
     1981 gcggtgccgc agtcggagct cgatcgatac cggattgagc gcgtgccggc cgacattttc
     2041 ctttggggtg gttaccgcta ctccaacgct cgcgatgcga tcgcagccgc aaagcggaac
     2101 gccaaatgag ttcgccccgg cgcaagccag aggattcagc cgacggatgc cgagcttttg
     2161 cggcctcgga ccgcgagcgc gcatcggggg ccgccaacgg ccatgtccgt gacaggttcg
     2221 aacggagcgc gcacgcgtgg atcgccaggg cgatcttgct cgaacatttg gaagccgatt
     2281 ttgatgcgca cgcgttgagt ttggcacgcc agacgaggaa acaccgcgcg attgaagttg
     2341 ggcaaaatgg ctaaggggca gaagcgctcg aacaaagaga cgcgaaagcc gaaggcgaaa
     2401 gcggcgaaga aattaaacgc ctctcaacca tccagaaatt gctcgggatt cgcggctcat
     2461 gaagatcgaa ggaagcatcc gctccaacct catttcagcc atcaccagcg ttcggcgctg
     2521 ggagggccgt ccggtgcaca aggatacgct cacctactgg catgccgttc tcgatcacgg
     2581 gcggcgttct attggcgaac ccgtgggtga attggtcgcg gaactcgaaa gcgaattggt
     2641 acgcgctggc aaacatcgac cgaccccatc gcgttccgct gattaggata ttctttc
//
LOCUS       DASRBJ010000203         2128 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_227833,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000203 DASRBJ010000000
VERSION     DASRBJ010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227833"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..477)
                     /locus_tag="VE968_05590"
     CDS             complement(<1..477)
                     /locus_tag="VE968_05590"
                     /inference="COORDINATES: protein motif:HMM:NF020857.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH pyrophosphatase zinc ribbon
                     domain-containing protein"
                     /protein_id="HZU51334.1"
                     /translation="MTRTLSEPFFSGQGLDRADALRADEPAIHSLATKPFARQLQWLD
                     GLPRVDGAGRVVWQAPVKPELFLGLDGEIPCFSAIEEVAPDARSAFHVLALLADVDAP
                     VVAAALSLSRWHSRHRFCANCGCLTNSVRGGWSRRCPTCGAEHFPRVDPVVIMIIER"
     gene            complement(470..1456)
                     /locus_tag="VE968_05595"
     CDS             complement(470..1456)
                     /locus_tag="VE968_05595"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007164710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000701 - purine-specific mismatch base
                     pair DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HZU51335.1"
                     /translation="MTANAADRLIQHYVDNFRQLPWRTPPGELASDPYPVWLSEVMLQ
                     QTTVATARPRFERFLARWPTIEALAAARDEEILHEWAGLGYYARARNLIVCARRVVER
                     GGFPRSAAELRQLPGIGAYTSAAIAAIAFGERAAAIDTNVERVLSRLCGLRNPKRSEL
                     ELILLDMLPADFPGDLVQAMMDLGATICRSANPSCAECPLRQDCVAFANKNPGDYPSR
                     QARAARPHKHGVAFWIERSSSIWLVRRPTRGLLGGMAALPGGTWDEPGRPSMDLIGTV
                     RHVFSHFSLDLHLVRRCEPSQDGWWQPLDRLDEAALPTLYRKAIGKALSSDD"
     gene            1607..2032
                     /locus_tag="VE968_05600"
     CDS             1607..2032
                     /locus_tag="VE968_05600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DciA family protein"
                     /protein_id="HZU51336.1"
                     /translation="MSRWSEIVGERYAKVSSPESIKFPTGKKAGGVLTLMVDGAHAPL
                     IQHLTPMIVERVNRFFGYTAINRIVFRQGKPPAQPARPLRPQLRPVPRELGEGLREIA
                     DPELRLCLESLAAQIVATSGPPSLSPEGEEPIPIINRSE"
BASE COUNT          429 a          659 c          660 g          380 t
ORIGIN      
        1 acgttcaatg atcatgataa cgaccggatc aacacgcgga aaatgttcgg ctccacaggt
       61 tgggcatcga cgcgaccaac cgcctcgaac gctattggta aggcatccgc agttggcgca
      121 gaatcgatgc cgcgagtgcc accgcgagag acttagcgcg gccgccacaa ccggcgcgtc
      181 tacgtcggca agaagcgcga gcacgtggaa cgctgaccgt gcgtcgggtg cgacttcttc
      241 aatcgccgag aagcagggaa tttcgccatc gaggccgagg aagagctcgg gcttcacggg
      301 agcttgccaa acaactcgcc ccgctccgtc gacccgcggc aagccgtcga gccactgcag
      361 ctgccgtgca aagggctttg tcgcaagcga gtggatcgcc ggttcatccg ctcgcaaagc
      421 gtcagcgcgg tccaggccct ggccgctgaa gaacggctca gataaggtcc tagtcatcgc
      481 tcgaaagcgc cttcccgatg gctttccgat aaagcgttgg aagtgccgcc tcgtcgagcc
      541 gatcgagcgg ctgccaccag ccgtcctgcg agggctcgca acgccggacc agatggagat
      601 caagcgagaa gtgactgaag acgtggcgca cggttccaat cagatccatg ctcgggcggc
      661 caggttcgtc ccacgtgccg cctggaagag cggccatccc gccgagcaag ccgcgtgtcg
      721 gccggcgcac tagccaaatc gacgaagagc gttcgatcca aaaggccact ccgtgcttgt
      781 gcggccgtgc ggctcgcgct tgccgcgaag gataatcacc ggggtttttg ttcgcaaaag
      841 caacgcaatc ctgacgtagt gggcattcgg cacaagaggg attggccgac cgacaaatcg
      901 ttgcgccaag gtccatcatc gcctgcacaa gatcgcccgg gaaatcagca ggcagcatgt
      961 cgaggaggat cagctcaagc tccgagcgct ttggatttcg caggccgcaa aggcgcgaca
     1021 agacccgctc tacgtttgta tcgattgccg cggcgcgctc gccaaacgca atcgccgcta
     1081 ttgctgccga agtataggct cctatcccag gcagctgtcg caactcggcc gctgagcgcg
     1141 ggaagccgcc gcgttcgacg actctccgcg cacagacgat gaggtttcga gcgcgcgcat
     1201 aatatccaag gcccgcccat tcgtggagga tctcctcgtc gcgtgctgca gcaagcgctt
     1261 cgatggtcgg ccaacgcgcg aggaagcgtt cgaaacgcgg gcgcgcggtc gctactgtcg
     1321 tctgctggag catcacttcg ctaagccaca ccggatatgg gtcactcgca agctcgcctg
     1381 gaggcgtgcg ccatggaagc tgccggaagt tatccacata atgttggatc aggcggtcgg
     1441 cggcattggc ggtcaccaag ccgctatggc atgctctttg gctatgtcga agggaaagca
     1501 ccacgaagat tcgccgcgaa gctgccgggc tcgcgccgca ggcgagcttg tcggcgacgt
     1561 cggcgggcgt tccttccggc gtttcggctt tgtgcagcac tcgatcgtga gtcgctggtc
     1621 ggaaattgtc ggtgagcgat acgccaaggt ctcctcaccg gaatcgatca agtttccaac
     1681 ggggaagaag gcgggcggcg tcctgacctt gatggtcgat ggagcgcatg cgccgcttat
     1741 ccagcatctg acgccgatga tcgtcgagcg ggtgaaccgg ttctttggct acacagcgat
     1801 caaccgtatc gtttttcgcc agggcaagcc gcctgctcaa ccggcgagac ccctccgtcc
     1861 ccagcttcga cccgtcccga gggaacttgg cgagggattg cgcgaaattg ccgatccgga
     1921 gcttcgtctt tgcctggagt cgcttgcggc gcaaattgtc gctaccagcg gccctccatc
     1981 gctctcgccc gagggcgagg aacctatacc catcatcaac cggagcgaat gatttgatga
     2041 aggttcgaac tctgatggcc ggtgccgtgg ccgtcctcgc gcttggcgcg tgcaacaaga
     2101 acaagaccga aggtccgacg tccacaac
//
LOCUS       DASRBJ010000204         2450 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_533630,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000204 DASRBJ010000000
VERSION     DASRBJ010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2450
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_533630"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..124
                     /gene="rplD"
                     /locus_tag="VE968_05605"
     CDS             <1..124
                     /gene="rplD"
                     /locus_tag="VE968_05605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HZU51337.1"
                     /translation="NLESVNLLPAVGANVYDIMRHETLVLTRAAVEKLEARFNG"
     gene            117..431
                     /locus_tag="VE968_05610"
     CDS             117..431
                     /locus_tag="VE968_05610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011414560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HZU51338.1"
                     /translation="MAKKPTQAPDARHYDVVLAPHITEKSTMLSENNSVVFKVASKAT
                     KPEIKAAVEALFNVKVMNVNTIVTKGKSKRWQGRPYQRSDMKKAIVTLAEGQTIDVTS
                     GI"
     gene            435..1271
                     /gene="rplB"
                     /locus_tag="VE968_05615"
     CDS             435..1271
                     /gene="rplB"
                     /locus_tag="VE968_05615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HZU51339.1"
                     /translation="MALKQYNPTSSARRSLILVDKSALWKGKPVKALTEGKRKTGGRN
                     NKGHVTSRGIAGGHKQKYRYIDFKRRTWDIAATVERLEYDPNRSAFIALVTYEGGEQA
                     YILAPQRLAPGDKVIAGKKVDVKPGNAMEIGQMPVGTIVHNVELKPGKGGQIARAAGT
                     YVQVVGRDRGMVIVRLNSGEQRYVRSDCMATVGAVSNPDNANTNLAKAGRNRWLGKRP
                     LTRGVAKNPVDHPHGGGEGRTSGGRHPVTPWGKPTKGARTRHNKATDKFIIRSRHAKK
                     KG"
     gene            1275..1550
                     /gene="rpsS"
                     /locus_tag="VE968_05620"
     CDS             1275..1550
                     /gene="rpsS"
                     /locus_tag="VE968_05620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HZU51340.1"
                     /translation="MARSVWKGPFVELSLLKKAESAQEKGGRAPIKTWSRRSTILPQF
                     VGLTFNVYNGRKFVPVSVNEEMVGMKLGEFAPTRTFHGHAADRKGKR"
     gene            1550..1927
                     /gene="rplV"
                     /locus_tag="VE968_05625"
     CDS             1550..1927
                     /gene="rplV"
                     /locus_tag="VE968_05625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HZU51341.1"
                     /translation="MGKPAAPRKVGEKEALAVGTTIRGSARKLNLVAEMIRGKKVEQA
                     LSMLQFSPKAMAEDVRKVLASAVANAENNHNLDVDALVVAEASVGKSISMKRFATRAR
                     GRSSRIVKPFSRLRVVVREQEEA"
     gene            1930..>2450
                     /gene="rpsC"
                     /locus_tag="VE968_05630"
     CDS             1930..>2450
                     /gene="rpsC"
                     /locus_tag="VE968_05630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HZU51342.1"
                     /translation="MGQKTSPVGLRLQINRTWDSRWFAEGQDYGRLLLEDLKIRKFIL
                     SKVPQAAISKVVIERPAKICRISIYAARPGVIIGKKGADIEKLKRELQKMTSSEVSLN
                     IVEIRKPEIDAKLVAQGVADQLERRIAFRRAMKRAVQSALRLGAEGIRITCSGRLGGA
                     EIARTEWYREGRVP"
BASE COUNT          527 a          702 c          795 g          426 t
ORIGIN      
        1 aaaccttgaa agcgtcaacc tgctgcccgc agtcggcgcc aacgtctacg acattatgcg
       61 gcatgaaacg ctggtcctga cccgcgctgc cgttgagaag ctggaggccc ggttcaatgg
      121 ctaagaagcc gacccaagcg cccgatgcgc gtcactatga cgtggtgctc gcgccgcaca
      181 tcaccgaaaa gtcgacaatg ctttcggaga acaactcggt cgtgttcaag gtagcctcga
      241 aggcaaccaa gcccgagatc aaggcagcag tcgaggcctt gttcaacgtc aaggtgatga
      301 acgtgaacac gatcgtcacc aaggggaaat cgaagcggtg gcagggccgg ccctaccagc
      361 gttcagacat gaagaaggcg atcgtgactc tggctgaggg ccagaccatc gacgtcacga
      421 gcgggatcta agcgatggct ctgaagcaat ataatccgac ctcgtcggcg cgccgcagcc
      481 tgatcctggt cgacaagtcg gccctgtgga agggcaagcc cgtgaaggcg ctgaccgagg
      541 gcaagcgcaa gaccggcggc cgcaacaaca agggtcatgt gacatcccgg ggaatcgccg
      601 gcggtcacaa gcagaagtat cgctacatcg acttcaagcg ccggacgtgg gacatcgcgg
      661 cgacggttga gcggctcgaa tatgatccca accggtcggc gttcattgcg cttgtgacct
      721 atgagggtgg cgagcaggcc tatattcttg cgccgcagcg cttggcgcca ggcgacaagg
      781 tgatcgccgg aaagaaggtc gacgttaagc ccggaaacgc gatggagatt ggccagatgc
      841 cggtcggcac catcgttcac aacgtcgagc tgaagccggg caagggtggt cagattgcgc
      901 gtgcggcggg gacctatgtt caggttgtcg ggcgcgatcg cggcatggtc attgtcaggt
      961 tgaattcagg cgagcaacgc tacgttcgct cggactgcat ggcgaccgtt ggcgcggtat
     1021 cgaaccccga caatgcgaac acgaacctcg ccaaggccgg gcgcaaccgc tggcttggca
     1081 agcgcccgct aacgcgtggt gtcgcaaaga atccggtcga ccacccgcat ggcggcggcg
     1141 aaggccgcac ctcgggcggc cgtcatccgg ttactccgtg gggcaagccc acaaagggtg
     1201 ctcgcacccg tcacaacaag gcgaccgata agttcatcat tcggtcccgt cacgcgaaga
     1261 agaagggtta atccatggcc cgttccgtct ggaaaggtcc gttcgtcgag ctttcgcttc
     1321 tgaagaaagc ggaatcggcc caggagaagg gtggccgtgc gccaatcaag acctggtcac
     1381 gtcgttcgac gatcctgccg cagttcgtcg gcctgacgtt caatgtctac aacggccgca
     1441 agttcgtgcc ggtgtcggtc aatgaagaga tggtcggaat gaagcttggc gagttcgcgc
     1501 cgacgcggac gtttcacggc catgctgctg acaggaaggg caagcgctaa tgggcaagcc
     1561 agctgcaccc cgcaaggtcg gcgagaagga agcgcttgcc gtgggcacca cgatccgtgg
     1621 ctcggcgcgc aagcttaacc tcgttgcgga gatgatccgg ggcaagaagg tcgagcaggc
     1681 gctcagcatg ctccagtttt cgcccaaggc aatggccgag gacgttcgca aggtcctcgc
     1741 gagcgccgtc gccaatgcgg agaataatca caacctcgat gtcgacgctt tggtcgttgc
     1801 cgaggcgagt gttggtaagt cgatttcgat gaagcgcttc gcgacgcggg cgcggggccg
     1861 atcgagccgc atcgtcaagc cgttcagccg cctccgagtc gtcgttcgcg agcaggaaga
     1921 agcgtaaata tgggtcagaa aacctcaccg gtcgggcttc gcctgcagat caacaggacc
     1981 tgggacagcc gctggttcgc cgaggggcag gattatggac gcctgcttct cgaggatctg
     2041 aagatccgga aattcatcct ttcgaaggtg ccgcaggcgg caatttcgaa ggtcgtcatc
     2101 gagcgtcccg cgaagatttg ccggatcagc atctatgctg cccgtcccgg cgtgatcatt
     2161 ggcaagaagg gcgcagacat cgagaagctg aagcgcgaac ttcagaagat gacgagctcc
     2221 gaagtgagcc tcaacatcgt cgagatccgt aagcccgaaa tcgatgccaa gctcgttgcg
     2281 cagggcgtcg ccgatcagct cgagcgacgc attgcctttc gtcgtgcgat gaagcgcgcg
     2341 gtccagtcgg cgcttcgtct cggtgcggag ggaattcgca taacctgctc gggtcgtctc
     2401 ggcggcgcgg agattgctcg aacggaatgg taccgcgagg ggcgcgttcc
//
LOCUS       DASRBJ010000205         2894 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_228243,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000205 DASRBJ010000000
VERSION     DASRBJ010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2894
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228243"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..320
                     /locus_tag="VE968_05635"
     CDS             <1..320
                     /locus_tag="VE968_05635"
                     /inference="COORDINATES: protein motif:HMM:NF024639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
                     /protein_id="HZU51343.1"
                     /translation="IDLETATIVTRDMVRYAKPDPDLFVEAARRLGTTTQGSYVIGDS
                     IWDMIAAARCGALGIGLLSGGYGREELERAGALRVYDDPADMLEHLDEIAPRAELAIA
                     GVE"
     gene            425..1744
                     /locus_tag="VE968_05640"
     CDS             425..1744
                     /locus_tag="VE968_05640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013836722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZU51344.1"
                     /translation="MEVAPFEKNDPRGETPVLPPNSLVIAGFSTIVEWYDFTLYLYFA
                     TVLARVFYGSSLGSRLVTLGGFAIAYLMRPLGAIFFSHIGDRRGRRNMLLISVALMTA
                     AMLTTALLPTRAQVGPLAGWLLFAVRCVMGFSVGGEYTGVVAYLLEGSADRRRGLITS
                     SASAASELGGLLAVAISAATVTLTSESDLASWGWRIPFLIGAALAGSVWIARSKMQES
                     PQFRISEKRRSIRKLPVADAVADHRPAIVRAFSISALGSITYYVGITYVPMFLTSAGG
                     MSERSSLWLSTAAAIAVILVTPLTGGLSDRFGRKPILIGLSVASAALPMTLFSLMAGN
                     GPIAAFEGAIILALLAGAVSAVGAVATAEQFPSEVRVSGLALGATMATALFGGLTPFV
                     AQLLVQEMHWSSAPGIMIAIVAIAVFPLLLLMKETAPLQHRSPVQSG"
     gene            complement(2075..>2894)
                     /locus_tag="VE968_05645"
     CDS             complement(2075..>2894)
                     /locus_tag="VE968_05645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004212408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HZU51345.1"
                     /translation="VGAEDERAQDALREIYRPLFLNRAPILITGRRTAELTKYAANAF
                     LAVKISFINEIADLCEAVDADVQDVARGIGLDNRIGPKFLHAGPGYGGSCFPKDTLAL
                     LQTAETAGVDQRIVRTTVEVNDDRKTQMATRIADALGGELRGKRIAILGLAFKPNTDD
                     MREAPSIPIVTALVKGGADVVAFDPVAREQAEKILNGIEFVNDAYSAAHDADVLVIVT
                     EWDEFRALDLRRIAATLRGKILIDLRNVYDRTEAEEAGLTYHGVGRGRSRLNAS"
BASE COUNT          531 a          866 c          836 g          661 t
ORIGIN      
        1 gaattgacct tgagacggcg acaatcgtca cgcgtgacat ggtccggtat gccaagcccg
       61 accccgacct gttcgtcgag gccgcccggc gcctcggaac gacaactcag ggttcctatg
      121 tcatcgggga cagtatctgg gacatgatcg ctgcggctcg ttgcggagcg ctcggcatcg
      181 gccttctttc gggagggtac ggccgtgaag agctcgagcg cgcgggcgct cttcgagtct
      241 atgatgatcc tgccgacatg ctcgagcatc tcgacgaaat tgcgcccaga gccgagcttg
      301 cgattgctgg cgttgaatga tcaatgacgt tcaagcactt ttcgtggcct tgtctgctgc
      361 tccctgagga ttgatcgtgc cctagcatgg cgacagcgcg gctggcctct gccaaggtgc
      421 accgatggaa gttgcgccat tcgagaaaaa tgatccgcgc ggtgaaacac cagtcctgcc
      481 accaaactcg ctggtgattg ccggtttctc gacgatcgtc gaatggtacg acttcacgct
      541 ctatctgtac ttcgcgaccg tgcttgcacg ggtattctat ggttcctcgc tcgggtcccg
      601 cctcgtgacg ctcggcggat ttgcgatcgc gtacctgatg aggccgcttg gcgcgatttt
      661 cttcagccac attggcgacc gtcgtggacg acgcaacatg cttctcattt cagtcgcact
      721 gatgactgcc gccatgttga cgacggcgct gttgccgacg cgagcgcagg tgggtccatt
      781 ggcgggctgg ctattgttcg ccgttcgctg cgtcatgggc ttttctgttg gcggggaata
      841 taccggagtc gtcgcctatt tgctcgaggg ctcagccgat cgacggcgcg ggctgataac
      901 ctcgtctgct tcggcggcga gtgagcttgg tggtctcctc gcggttgcga tctcggccgc
      961 gacggttact cttacaagtg aatcggatct cgcgtcctgg gggtggcgca ttcctttctt
     1021 gatcggcgct gcacttgctg gctccgtttg gattgcacga tccaaaatgc aggaatcccc
     1081 gcagttcaga atcagcgaaa aacgacgttc tattcgaaag cttccggtcg ctgatgccgt
     1141 cgcggatcac cgaccggcta ttgttcgagc cttctcgata tctgctcttg gttcgatcac
     1201 ttactatgtc ggcatcacct acgtcccaat gttcctgacg tcagctggcg gcatgtcgga
     1261 acgcagttcg ctctggcttt caacggctgc ggcgatcgcg gtgatcctcg tgacgccttt
     1321 aactggaggc ctcagcgatc gttttgggcg caaaccgatc cttattggcc tcagcgtcgc
     1381 aagcgcggct ctcccgatga ccttattctc actcatggcc ggcaatgggc cgatcgccgc
     1441 cttcgaaggt gcgatcatcc tcgccttgtt ggcaggcgcc gtaagtgccg tcggggccgt
     1501 tgcgaccgca gaacagtttc ctagtgaagt acgcgtgtcc gggctggcgc tcggtgcgac
     1561 gatggcaaca gcattgttcg gcggcctgac gccatttgtg gcacagctcc ttgttcaaga
     1621 aatgcactgg tcaagcgcgc caggaatcat gattgcaatc gtcgcgatcg ccgtcttccc
     1681 attgctgctc ttgatgaagg aaacggcgcc attgcagcac cgttcgccgg ttcaatcggg
     1741 ctgaaacgcg cttttgggtt catccactca tcagccgtta acctggtccg agcgtatcga
     1801 gcctccagca cggtcggaga attcgcgatg gacctaaact acatgtttct tcgccagcag
     1861 gttgagcgga gccttgcgcg ttcggcgcgc agcgaggcgg cacgacgcgc gcacgaggaa
     1921 ctcgctcgaa attacgagtt agaaatcgaa cgaaagaccg gtggccgcat tctctttcaa
     1981 cgaaaccggc gagacttgtt aagcaaagcc tgagatcgca ctcggcagcc gactaaggac
     2041 gcacgccgcg caaaggaacg ctcctggttt ttacctagct cgcgtttaag cgcgaacgcc
     2101 cccttcccac accgtggtag gttagcccag cttcctccgc ttcagtccga tcatagacgt
     2161 tcctaagatc gatcagaatc ttcccgcgta aggttgctgc gatgcgcctc agatcgagcg
     2221 ctcgaaactc gtcccactca gtaacaatca ccaatacgtc ggcatcatgt gccgccgaat
     2281 aggcatcgtt cacgaattca attccattga ggatcttctc agcctgctcg cgcgcaaccg
     2341 ggtcaaaggc gaccacatca gctccccctt tcacaagcgc cgtcacgatc gggatcgagg
     2401 gcgcttcgcg catgtcgtcg gtgttgggct tgaaggctag tccaagaata gcaatccgct
     2461 tgccgcgcag ctcaccgcca agtgcgtccg ctatgcgcgt cgccatctgc gtcttgcggt
     2521 catcgtttac ctcgactgtc gtacgcacga tgcgctggtc gacaccggct gtctccgccg
     2581 tctgcaatag ggcaagcgtg tctttgggaa agcagcttcc gccataaccc ggccctgcgt
     2641 gcaggaattt gggtccgatg cggttgtcga gcccaattcc ccgagcgacg tcctgaacgt
     2701 cagcatcaac tgcttcgcac aagtcggcaa tctcgttgat gaagctaatc ttcaccgcaa
     2761 ggaacgcgtt ggccgcgtat ttggtaagtt ctgcggtgcg tcggccagtg atgaggatcg
     2821 gcgctcgatt gaggaacaag ggccggtaga tctcgcgtag agcgtcctgg gcgcgttcgt
     2881 cctccgcacc gaca
//
LOCUS       DASRBJ010000206         6921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_534475,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000206 DASRBJ010000000
VERSION     DASRBJ010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6921
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_534475"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1009)
                     /gene="secY"
                     /locus_tag="VE968_05650"
     CDS             complement(<1..1009)
                     /gene="secY"
                     /locus_tag="VE968_05650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HZU51346.1"
                     /translation="MASAAEQLASSISLANFQKATELKKRLWFTIGALVLFRLLSFVP
                     VPGIDPVAMNALYQTQSGGILDVFNTFSGGALSRFSIVALGVMPYITASIVIQLGATL
                     YGPWQALRKEGETGRKKLNQYTRYLTVAITLVQGYLAVRGLEAQTLRQGIQAVVQPGL
                     LFELAGTVSLVGGTLFLMWIGEQITSRGIGNGVSLIIMAGIVARLPQAIGQLLEGGRT
                     GSLNGVVVVGIIALTVILILFICFMERAQRRVLIQYPKRQTARGMQQERSHLPIKLNT
                     AGVIPPIFASSLLLMPLTVLQWAGNRASAGGNTSDWLITISTFLQHGSVPYELLYVAG
                     II"
     gene            complement(1106..1630)
                     /gene="rplO"
                     /locus_tag="VE968_05655"
     CDS             complement(1106..1630)
                     /gene="rplO"
                     /locus_tag="VE968_05655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HZU51347.1"
                     /translation="MKLNDIRDNKGARQSRVRVGRGIGSGLGKTAGRGQKGLKSRSGS
                     TVNGFEGGQMPLHMRLPKRGFNNIFARDYAEVNIGAIQKAVDAGKLDVRETLDHETLK
                     GAGLARGGKDGVRLLGKGELNAKLALRVAGASKGAREAVEKAGGSIELIERKNPAELA
                     AAKKGSRKAAATKA"
     gene            complement(1787..1969)
                     /gene="rpmD"
                     /locus_tag="VE968_05660"
     CDS             complement(1787..1969)
                     /gene="rpmD"
                     /locus_tag="VE968_05660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017666977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HZU51348.1"
                     /translation="MAKIRITQTGSPIRRDKTQRATLVGLGLNKLHRSVEVEGTPEVM
                     GQVRKVQHLLKVEEAA"
     gene            complement(1975..2709)
                     /gene="rpsE"
                     /locus_tag="VE968_05665"
     CDS             complement(1975..2709)
                     /gene="rpsE"
                     /locus_tag="VE968_05665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013832936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HZU51349.1"
                     /translation="MADENQTNEVNTDPQEVAQTAEATPAQAEEQRAPRGRRGRGGDR
                     EGGRGGRGRRDDRRNRGGDEDAGEELIEKLVHINRVSKTVKGGKRFGFAALVVVGDGK
                     GRAGFGHGKAREVPEAISKATASAKKAMIRVPLRDGRTLHHDGNGHFGAGRVTIRSAP
                     SGTGIIAGGPMRAIFESLGVADVVTKSVGTSNPYNMIRATFEALKDQSSPRAVSQRRG
                     KKVADLLGRGGASAAEAEAQAEAIAE"
     gene            complement(2710..3063)
                     /gene="rplR"
                     /locus_tag="VE968_05670"
     CDS             complement(2710..3063)
                     /gene="rplR"
                     /locus_tag="VE968_05670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HZU51350.1"
                     /translation="MAKLSLFDRRRRRVRSALRLRSAGKPRLSVHRSGRHIYAQVIDD
                     SAGTTVAAASTLDKGLKGKTGATKDSAAAVGKTIAERAKAAGVSKVVFDRGGFLFHGR
                     VKALADAAREGGLEF"
     gene            complement(3066..3602)
                     /gene="rplF"
                     /locus_tag="VE968_05675"
     CDS             complement(3066..3602)
                     /gene="rplF"
                     /locus_tag="VE968_05675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HZU51351.1"
                     /translation="MSRIGKKPIAMPSGVTASVEGQTLTVKGPKGTLSMQLLDDLVKY
                     EVAEGEIRVTPLTDAQRNRAAWGMTRTNVQNLVTGVTEGFTKVLEITGVGYRAQAQGK
                     NLRLQLGYSHDVNYPVPEGIDVKTPDQNTVEISGIDKQKVGQVAAEIRRWRKPEPYKG
                     KGIKYRGEYIFRKEGKKK"
     gene            complement(3602..3997)
                     /gene="rpsH"
                     /locus_tag="VE968_05680"
     CDS             complement(3602..3997)
                     /gene="rpsH"
                     /locus_tag="VE968_05680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011240437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HZU51352.1"
                     /translation="MAMTDPLGDMLTRIRNGQQARKDSILTPASKLRTRVLDVLQREG
                     YIRGYSEEELAGQKGIRIELKYFEGQPAIQHLARVSKPGRRVYSAARELPRIRNGLGT
                     IIVSTPRGVLSDAEAREQNVGGEVLAEVF"
     gene            complement(4012..4317)
                     /gene="rpsN"
                     /locus_tag="VE968_05685"
     CDS             complement(4012..4317)
                     /gene="rpsN"
                     /locus_tag="VE968_05685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014077866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HZU51353.1"
                     /translation="MAKLSSINKNERRKKLVQQNAAKYARLKAIADDQSKDETERLIA
                     RLKMAELPRNGNPTRVRNRCELTGRSRAYYRKFRLSRIMLRELANKGLIPGVIKSSW"
     gene            complement(4351..4929)
                     /gene="rplE"
                     /locus_tag="VE968_05690"
     CDS             complement(4351..4929)
                     /gene="rplE"
                     /locus_tag="VE968_05690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HZU51354.1"
                     /translation="MADEKYIPRLRRDYDERIVAAMTERFGYKNRMEVPKIEKIVINM
                     GVGDATQDKKRVDTAAAEMQAISGQKPVITKAKKSIAQFKLREGMPIGCKVTLRRERM
                     YEFLDRLVTIALPRVRDFRGLNPRSFDGRGNYALGLKEQIIFPEINYDQIDRVRGMDI
                     IITTTAKTDEEARELLRLFNFPFPVEEQRQAA"
     gene            complement(4922..5239)
                     /gene="rplX"
                     /locus_tag="VE968_05695"
     CDS             complement(4922..5239)
                     /gene="rplX"
                     /locus_tag="VE968_05695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HZU51355.1"
                     /translation="MGAAKIRKGDTVVVLSGKDKGKTGEVIRSMPKESKVVVSGVNVH
                     ARHRKPTQVNPQGGIERKEAPLHISKVAIATADGKPSRVRFEERDGKKVRIAAKTGEL
                     ING"
     gene            complement(5242..5610)
                     /gene="rplN"
                     /locus_tag="VE968_05700"
     CDS             complement(5242..5610)
                     /gene="rplN"
                     /locus_tag="VE968_05700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011567679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HZU51356.1"
                     /translation="MIQMQSNLDVADNSGAKRVQCIKVLGGSKRRTAGVGDIIVVSVK
                     EAAPRGRVKKGDVHRAVIVRTAKDIRRPDGSVIRFDSNAAVLVNKNEEPIGTRIFGPV
                     VRELRAKKHMKIISLAPEVL"
     gene            complement(5793..6029)
                     /gene="rpsQ"
                     /locus_tag="VE968_05705"
                     /pseudo
     CDS             complement(5793..6029)
                     /gene="rpsQ"
                     /locus_tag="VE968_05705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952187.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
     gene            complement(6043..6249)
                     /gene="rpmC"
                     /locus_tag="VE968_05710"
     CDS             complement(6043..6249)
                     /gene="rpmC"
                     /locus_tag="VE968_05710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008603047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HZU51357.1"
                     /translation="MAVIHDLKQKTDDQLQQQLGELKREQFNLRFQSATNQLEKPSRV
                     REVRRTIARIKTLQNERARAQAKG"
     gene            complement(6252..6683)
                     /gene="rplP"
                     /locus_tag="VE968_05715"
     CDS             complement(6252..6683)
                     /gene="rplP"
                     /locus_tag="VE968_05715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HZU51358.1"
                     /translation="MLQPKRTKFRKAFKGRIHGNAKGGTELNFGAFGLKAMEPERITA
                     RQIEAARRAITRHIKRTGRLWIRVFPDVPVSSKPAEVRMGSGKGSPEFWVARVKPGRI
                     LFELDGVPGALAKTAFERAAEKLPIKTKVVARLGENLAAEE"
     gene            complement(6703..>6921)
                     /locus_tag="VE968_05720"
     CDS             complement(6703..>6921)
                     /locus_tag="VE968_05720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HZU51359.1"
                     /translation="EWYREGRVPLHTLRGNVDYAEAEAHTAYGVCGVKVWVFKGEILG
                     HDPLAQDRLMMEAQTSGVRPAREERGNR"
BASE COUNT         1172 a         2231 c         2030 g         1488 t
ORIGIN      
        1 agatgatgcc ggcgacgtag agcagttcgt agggaaccga cccgtgctgg agaaaagtgc
       61 tgatggtgat cagccagtca ctcgtgttcc cgccggcact tgcgcggttg ccggcccatt
      121 gcagcacggt gagcggcatc agcagtagcg atgaggcgaa aatcggcgga atcacgcccg
      181 cggtgttgag cttgatcggc aggtgcgagc gctcctgctg cattccacgt gccgtctggc
      241 gcttggggta ctggataagc acccgtcgct gcgcccgctc catgaagcag atgaagagaa
      301 tgaggatcac cgtaagggcg ataatgccga cgacgacaac gccgttcagt gacccggtgc
      361 ggccgccctc gagaagctgc ccaattgctt gtggaaggcg tgcgacaata cccgccatga
      421 tgataagcga cacgccattg ccgatacctc gactggtgat ctgctcaccg atccacatga
      481 ggaagagcgt cccgccgacg aggctgacgg tcccggcgag ttcaaacagc agtcctggct
      541 gaacaacagc ctggatgcct tgtcgaagag tttgagcctc gagaccgcgc acggcgagat
      601 atccctgcac cagcgtgatc gcgaccgtga gatagcgcgt gtactggttc agcttcttgc
      661 gtccggtttc gccctctttg cgcaacgcct gccacgggcc ataaagcgtg gcgccgagct
      721 ggataacgat cgacgccgtg atgtagggca tgacaccaag cgcaacgatc gagaaacgcg
      781 agagagcgcc acccgagaaa gtattgaaaa cgtcgaggat gcccccgctc tgcgtctggt
      841 aaagcgcgtt catcgcaacc ggatcgatgc ccggcacggg aacgaacgaa agcaagcgaa
      901 acaggaccag cgccccgatc gtgaaccaca gccttttctt aagctcggtc gccttttgga
      961 aattcgcgag cgagatgctg gaggcgagtt gttcggctgc ggatgccatc gatcagaaat
     1021 tccccggaaa aacaaacggc ggcgataagg ccaaaagcct ccccgccgcc gatatagtgg
     1081 ctcttggccg cttgtctaag accccttagg ccttggtggc agcggccttg cgcgaaccct
     1141 tcttggcagc ggcaagttca gctggattct tgcgctcgat gagctcgatt gagccgcctg
     1201 ccttttccac cgcttcgcga gcacccttcg aggcgccggc aacgcgcagt gcaagcttgg
     1261 cgttcagctc tcccttgccg agcaggcgaa cgccgtcctt gccgccgcga gcaagaccag
     1321 cgcccttcag tgtttcatgg tcgagagttt cccggacgtc gagcttgccg gcatcgaccg
     1381 ccttctgaat cgcgccaatg ttcacctcgg catagtcacg cgcgaagata ttgttgaagc
     1441 cgcgcttggg aagccgcatg tggaggggca tctgcccgcc ctcgaagccg ttaaccgtcg
     1501 agccggatcg cgacttgagg cccttctggc cacgccccgc agtctttcca aggcccgagc
     1561 cgattccacg gccgacgcgg acgcggctct gccgcgcgcc tttgttgtca cgaatgtcat
     1621 tcagtttcat gttcttgcac tcgctttcgc ttttgtcgcg cacggatggg cggaagatcc
     1681 tccatccatt acttccccca aaaatgggag aattgcttct tctgcttatt ttgcccgccg
     1741 agaagaaaag agcggatgtt ggctatttgc ccgttagaaa tcgtgcctag gcggcttcct
     1801 cgaccttcag caggtgctga accttgcgaa cttgacccat gacttcgggc gtcccctcga
     1861 cttcgacgct gcggtgcagc ttgttgagtc caaggccaac gagtgtcgcc cgctgcgtct
     1921 tgtcgcggcg gatcggcgat cccgtctggg taatcctgat cttcgccatt ctaattactc
     1981 cgcaattgct tcggcctggg cttcggcttc agcggcgctc gcgccgccac gaccgagcag
     2041 gtcagcaacc ttcttgccgc gacgctgcga gacagcgcgc ggactcgact gatccttcag
     2101 cgcctcgaag gtcgcgcgga tcatgttgta aggattggac gtgccaaccg acttggtcac
     2161 gacgtcagca acgccaaggc tttcgaaaat cgcgcgcatc ggtccacccg caatgatccc
     2221 ggttcccgat ggcgccgaac ggatcgtcac tcggccggca ccaaaatgcc cgtttccgtc
     2281 gtggtgaagc gttcggccat cgcgaagcgg gacgcggatc atggccttct ttgccgaagc
     2341 cgttgccttg ctgatcgctt ctggcacttc gcgcgccttt ccatggccga agcccgcacg
     2401 gcccttgccg tcgccgacga caacgagtgc tgcaaagccg aagcgcttgc cgcccttcac
     2461 cgtcttcgac acacgattga tgtggacgag cttctcgatg agttcctcgc cggcatcctc
     2521 gtcgccaccg cgattgcggc gatcgtctcg tcgcccgcgg ccgcctcggc cgccctcgcg
     2581 atcaccaccg cggccgcgac ggccacgggg agcgcgctgc tcctcggctt gcgccggagt
     2641 cgcttcagca gtctgagcga cctcctgcgg atcggtattg acttcgttgg tctggttttc
     2701 gtcagccatt taaaactcca gtccgccttc gcgggcagcg tcggcgaggg ccttcacccg
     2761 gccatggaac aggaacccgc ctcggtcgaa cacgaccttg gacaccccgg cagccttggc
     2821 gcgctcggcg atggtcttgc cgaccgcagc cgcgctgtcc tttgtcgcgc cggttttgcc
     2881 cttgaggccc ttgtccagcg tcgatgccgc ggcaacggtc gtcccagcgc tgtcgtcgat
     2941 gacctgcgcg tagatgtgcc gacccgagcg atgaaccgaa aggcgcggct ttccagccga
     3001 gcgtaaacga agagcgctgc gcacacggcg gcggcggcga tcgaacaggg aaagtttcgc
     3061 catggctact tcttcttgcc ttctttgcgg aagatatact caccgcgata cttgataccc
     3121 ttgcccttgt agggctccgg cttgcgccag cgacggatct cggcagcgac ctgcccgact
     3181 ttctgcttgt cgatgccgct gatctcaacc gtgttctggt cgggagtctt gacgtcgatg
     3241 ccttcgggca cgggataatt gacatcgtgg ctgtagccga gctgaaggcg caggttcttt
     3301 ccctgtgcct gggcacgata gccgacacca gtgatctcga ggaccttggt gaagccttcc
     3361 gtgactccgg tcacgaggtt ctgcacgttg gtccgggtca tcccccatgc ggcgcggttg
     3421 cgctgcgcgt cggtcagcgg cgtaacccgg atttcacctt cggcaacctc gtacttcacg
     3481 aggtcgtcca gcaactgcat cgagagcgtt cccttcgggc ccttcacggt caaggtctgg
     3541 ccttctacgc tcgccgtcac gcccgacggc attgcaattg gctttttgcc tatgcgcgac
     3601 attagaaaac ctccgccagc acttcgccgc cgacattctg ctcgcgcgct tcagcgtcgg
     3661 acagcacgcc gcggggggtc gacacgatga tcgttccgag gccattgcgg atgcgcggaa
     3721 gctcgcgggc ggctgaatac acgcgtcgcc caggcttcga cactcgcgcg aggtgctgga
     3781 tcgccggctg gccctcgaaa tacttaagct caatgcgaat gcccttctgg cccgcgagct
     3841 cttcttcgga atagccacgg atatagcctt cgcgctgaag cacatcgagt acgcgcgtgc
     3901 gcagcttcga cgcaggcgtg aggatcgagt ccttgcgcgc ctgctgcccg ttgcggatgc
     3961 gggtgagcat gtcacccaga ggatcggtca tcgccatctt ccagatcctc cttaccagct
     4021 cgacttgatg acgcctggga tcaggccctt gttggccagc tcccgaagca tgatccgtga
     4081 cagacggaac ttgcgataat aggcgcgcga acggcccgtc agctcgcaac ggttgcgcac
     4141 gcgcgtcgga ttcccgttcc gcggcagctc cgccatttta agacgcgcga tcagccgctc
     4201 cgtttcgtcc tttgactggt cgtccgcgat cgccttcagc cgtgcgtact tcgccgcatt
     4261 ctgctggacg agcttcttgc gtcgctcgtt cttgttgatc gaactcagtt tcgccatgac
     4321 ttaagttctt ctcctatccg gcaagaccgc tcaggcggcc tgccgctgct cctcaaccgg
     4381 gaaggggaaa ttgaacaggc gcagcagttc gcgtgcctct tcgtccgtct tcgcagtcgt
     4441 tgtgatgatg atgtccatgc ccctgacccg atcgatctga tcgtagttga tctccgggaa
     4501 aatgatctgc tccttgagac cgagcgcata attgccgcgg ccatcgaatg aacgcgggtt
     4561 gaggccgcgg aagtcgcgaa cgcgcggaag cgcaatcgtg accagccggt ccaggaactc
     4621 gtacatgcgc tcgcggcgca gcgtgacctt gcagccgatc ggcatgcctt cacgaagctt
     4681 gaactgagcg atcgacttct tggccttggt gatcaccggc ttctggccgg agattgcctg
     4741 catttccgct gcggcggtgt cgacgcgctt cttgtcctgc gtcgcatcgc caacgcccat
     4801 gttgatgacg atcttttcaa tcttcggaac ttccatgcgg tttttgtacc caaaccgctc
     4861 ggtcatcgct gcgacgatgc gctcgtcata gtcccgccga aggcgcggga tgtatttctc
     4921 gtcagccatt gatcaactct ccggtcttgg cagcaatgcg aaccttcttg ccgtcacgct
     4981 cttcgaagcg gacccggctc ggcttgccgt cggcagtcgc aatcgcgact ttcgatatat
     5041 ggagcggcgc ttccttgcgc tcgatgccgc cctgcgggtt gacttgcgtc ggcttgcggt
     5101 ggcgcgcgtg aacattcact ccggacacga ccacctttga ttccttcggc atcgagcgga
     5161 tgacttcacc cgtcttgccc ttgtccttgc cggacagcac gacgaccgtg tcgcccttgc
     5221 ggatctttgc agcgcccatg gttagagcac ctccggcgca aggctgatga tcttcatgtg
     5281 cttcttggca cgaagctcac ggacaaccgg gccgaatata cgcgtcccga tgggttcctc
     5341 gttcttgttg acgaggactg cagcgttgct gtcgaagcga atgaccgatc cgtccgggcg
     5401 gcggatgtcc tttgccgttc ggacgatcac cgcacggtgc acgtcaccct tcttcacgcg
     5461 gccgcgcggt gcggcttcct tgacgctaac gacgatgatg tcgccaacgc cagcagtacg
     5521 gcgctttgag ccgcccagta ccttgatgca ctggacgcgc ttcgcgccgc tattatccgc
     5581 aacgtccagg ttggactgca tctggatcat tgttcgaccc tactctctct ctcaatctcg
     5641 tcttacgcat ccgcttcggc gacgtcttcg gccttggcct tcttgccctt cttcgcgggc
     5701 ttttcggcct tttccgaagc cggcttggtc ggctcggctg ccggagccgc aatcgcttcc
     5761 ggctcggcaa tgtcgaccgt gccaaccctg gccgtgccga tgcggtcgac caccgtccaa
     5821 gtcttgagct tggagatggg cgcacattcc tcgatgcgca cgatctcgcc ggcgcggaac
     5881 tcgttcgccg cgtcgtgcgc gtgatacttc ttcgacagct tgatgatctt gccgtagagc
     5941 gggtgcttca cccgccgctc gacgcggacc acgaccgtct tgtcaccctt gtcggacacc
     6001 acggtgccgg tgaggacgcg ctttggcatc tcgatagtct cctcagccct tggcctgcgc
     6061 ccgggcgcgt tcgttttgca gcgtcttgat ccgggcaatc gtgcggcgaa cttcgcgcac
     6121 tcggctcggc ttctcgagct ggttcgttgc cgactggaag cgcaggttga actgctctcg
     6181 cttcagctca ccgagctgct gctgcagctg gtcgtcggtc ttctgcttga gatcgtggat
     6241 gaccgccatc tctattcctc cgccgcgagg ttctcgccca gtcgggcaac aaccttggtc
     6301 ttgatcggca gcttctcagc cgcacgttcg aatgccgtct ttgcaagggc gccgggaacg
     6361 ccgtcgagct cgaacaggat acgtccaggc ttcacgcgcg cgacccagaa ctcgggtgaa
     6421 ccctttcccg agcccatgcg gacttcggcg ggcttggagc ttaccggaac gtccgggaac
     6481 acgcggatcc agagacggcc cgtacgcttg atgtgacgcg taatggcacg acgagccgcc
     6541 tcgatctggc gggccgtgat cctctcaggc tccattgcct taagaccaaa ggcgccgaag
     6601 tttagctcgg tgccaccctt ggcattgcca tggattcggc ctttgaaggc cttgcggaac
     6661 ttggtgcgct tgggttgcag catttcttac tttccttcgc gcttagcggt tgccgcgctc
     6721 ttcgcgcgcg ggacggacgc cggaggtctg tgcctccatc atcaagcgat cctgcgcgag
     6781 cgggtcgtgg ccgagaatct cgcccttgaa gacccacacc ttgaccccgc agacaccata
     6841 agcggtatgt gcctcggcct cggcataatc gacgtttccg cgaagcgtgt gcagcggaac
     6901 gcgcccctcg cggtaccatt c
//
LOCUS       DASRBJ010000207         9850 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_123067,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000207 DASRBJ010000000
VERSION     DASRBJ010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 9850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9850
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123067"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..732)
                     /locus_tag="VE968_05725"
     CDS             complement(<1..732)
                     /locus_tag="VE968_05725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HZU51360.1"
                     /translation="MFKKILIANRGEIACRVIRTARRMGIKTVAVYSDADVRAPHVLM
                     ADESVRLGPPPASESYLKAELIIDACRVTGAEAVHPGYGFLSERESFARALEDAGIAF
                     IGPPPSAIAAMGDKIESKKLAKAAGVNVVPGYLGDIATTDEAVEIAGDIGFPVMMKAS
                     AGGGGKGMRLAWNETDVREGFDSVKREGLNSFGDDRVFIEKFIEQPRHIEIQLLGDKH
                     GNIVYLNERECSIQRRHQKVVEEAPS"
     gene            complement(851..2989)
                     /gene="scpA"
                     /locus_tag="VE968_05730"
     CDS             complement(851..2989)
                     /gene="scpA"
                     /locus_tag="VE968_05730"
                     /EC_number="5.4.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004494 - methylmalonyl-CoA mutase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase"
                     /protein_id="HZU51361.1"
                     /translation="MSKKLSKTDWDVLRAKESRGKDLTRETVEGIRINTVYGAEDAAG
                     IDSGYPGIAPFTRGPYATMYAGRPWTIRQYAGFSTAEESNAFYRRNLAAGQKGLSVAF
                     DLATHRGYDSDNPRVSGDVGMAGVAIDTVEDMKLLFDGIPLDQMSVSMTMNGAVLPVM
                     AFFIVAAEEQGVAHAKLTGTIQNDILKEFAVRNTYIYPPEPSMRIVSDVIAYCAREMP
                     KFNSISISGYHMHEAGATAVQELAYTLADGMEYVRAACSRGLQIDEFAGRLSFFFGIG
                     MNLFMEVAKLRAARTLWHRIMSELGAEKEESKRLRTHCQTSGVSLTEQDPYNNVIRTT
                     IEALAAVLGGTQSLHTNSFDEAIALPTDFSARIARNTQLILAEESGVTAVADPLGGSF
                     YVEKLTRELEEKAWALIEEVEAHGGMTKAVAEGLPKHRIEEAAAARAAKVDTGETVIV
                     GVNRYRLEDEPEVDILEVDNARVRASQIARMEKVRAGRDELKVRAALDALEAGARGKE
                     NLLTLSIEAARARCTLGEISDALERAFGRYGTKPEPVRGIYGAARDDSRWSAAVEGTA
                     AVGRRLGRKPRLMVAKMGQDGHDRGANLVASAFADLGFDVVAGPLFQTPAETAKMAID
                     HGVDVVGASSLAAGHRTLIPEMIEVLKDMGRSDIKVVVGGVIPAKDYPMLRAAGVQAI
                     FGPGTNLADAADEILRLLGHNRPPLDEAAE"
     gene            complement(3147..4739)
                     /gene="purH"
                     /locus_tag="VE968_05735"
     CDS             complement(3147..4739)
                     /gene="purH"
                     /locus_tag="VE968_05735"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006952329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HZU51362.1"
                     /translation="MIDFVPVRRALISLSDKGGLQQLAAGLAKHQVEMVSTGGTAAKL
                     RDYGAQVRDISDLTGFPEMMDGRVKTLHPLVHGGLLGVRDNPEHAKAMEQHGIEPIDL
                     VVVNLYPFLNTVMSGATRETIVENIDIGGPSMVRSAAKNHAHVAIITDPADYATLLDE
                     LDATGGSTSLELRKKLAAKAFALTAAYDSTISQWFAFADQGERFPETWARASSLKMPL
                     RYGENPHQQAALYVPIGPAARGIAQADQVQGKELSYNNLNDANAALELAAEFRDEAPT
                     IVIVKHANPCGVATRDSLLEAWTDALACDSVSAFGGIVAANHSLDRATAEAITDIFTE
                     VVVAPDADDAAREVFARKKNLRLLLTGHLPDPSRGGQSIAVIAGGILVQDRDNGVVHR
                     EQLKCVTKRQPSERELRDCLFAWTVAKHVKSNAIVYAKDGATAGIGAGQMNRRDSARI
                     AAAKAVEAAAMNGWPEPRTVGSAVASDAFFPFADGLLAAADAGATAVIQPGGSIRDEE
                     VIAAADEAGLAMLFTGMRHFRH"
     gene            complement(4760..5485)
                     /locus_tag="VE968_05740"
     CDS             complement(4760..5485)
                     /locus_tag="VE968_05740"
                     /inference="COORDINATES: protein motif:HMM:NF019552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heparinase II/III-family protein"
                     /protein_id="HZU51363.1"
                     /translation="MGLSALVGTWHDCLIDAAPPPPQKIAERGSASTLAFELSDGSQR
                     LVVNCGGPGPVPSDLPQELLQALRTTAAQSTLVLSDTNSTNILADGSLGKGVEDVAID
                     RSEDNDASRIEASHDGYVRAFGLVHKRSLMLGNDGKELRGADQLTARGRKKIRESAPY
                     AVRFHLAPGVEATITADGMGAILRSKGAPAWNFRCRGGNLISEESLWIDGRGRPHRTS
                     QLVIVGEVSALGGEIGWTFRRAS"
     gene            complement(5443..6411)
                     /locus_tag="VE968_05745"
     CDS             complement(5443..6411)
                     /locus_tag="VE968_05745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51364.1"
                     /translation="MNRDGSAAERAIVGKLARGSLFSRLRRSKQPLKLVAVPRDHVHG
                     ERSNGEALLAGRFTVGAETLTLKDLDFGEVGTKSPLAAQLQSFSWLRDLAAAASREKG
                     ARLAEAVVGRWLLAHGAKVDDAWAPHLWGERILFWAAYAPYILSSRDSGYRSALLNTL
                     ARGARHLDSNADKAPPGLDRVTAWCGVVAAGLLVQGGVPRVARGEAGLAPALAGAQFD
                     DGGLVSRSPYEQIRLVDRLGLLRACYVAAKQTIPDGIEAAAQASLAALHGIMMGDGAL
                     SSWQGCGPSDSARIADLIDGCGMRARPLRHAGGWGYQRLSALGTIV"
     gene            complement(6408..7064)
                     /gene="rpe"
                     /locus_tag="VE968_05750"
     CDS             complement(6408..7064)
                     /gene="rpe"
                     /locus_tag="VE968_05750"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008995278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HZU51365.1"
                     /translation="MPVIAPSILSADFARLGDEVRAIDEAGADWIHIDVMDGHFVPNL
                     TIGPSVVKALRSHTKKPFDVHLMIAPVDPFIDAFADAGADIITVHPEAGAHLHRTVQR
                     IRALGRRAGVALNPATPEIALDYVLEDVDLILVMSVNPGFGGQKFISSQLRKIESIGE
                     RIVQLGLEIELEVDGGIDPETARQAVGAGATALVAGTAAFRGGPSAYRSNIDALRGPS
                     "
     gene            complement(7083..8333)
                     /locus_tag="VE968_05755"
     CDS             complement(7083..8333)
                     /locus_tag="VE968_05755"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HZU51366.1"
                     /translation="MPSVEGVAARRVALQILDQVLRRGRTIDAASANGRNLAPNDLAL
                     AIAIAGEALRRLRDIDELIDSTTRTRLPSDSKARAVLRLALAQKVGLGTPDHAVVSTA
                     LPLLDGGPRRLAHGILGTLLRRGVPVANSSKLPNPVEERWGEWWGKEAVLAARRQIVR
                     RPDLDLTFASPLLAQRYAEQNGGCSLASGHVRLQSRSVEDLPDFEEGSWWIQDLAASL
                     PARLVPSNAVNVLDLCAAPGGKTMQLSAAGHSVTAVDSSTSRLRRLEENLNRTHLAAK
                     LVEADAVDWTPPIEFDAILLDAPCSATGTFRRHPEVLYRARSDVIARSAEQQAVLLDR
                     ASRWLKVGGTIIYSVCSLEIREGEEVIRGFLRHSSDFAIDGPSNLPHFVPISSEGWVR
                     ILPGLIEEEGGLDGFFIARLVRVR"
     gene            8362..8541
                     /locus_tag="VE968_05760"
     CDS             8362..8541
                     /locus_tag="VE968_05760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1674 domain-containing protein"
                     /protein_id="HZU51367.1"
                     /translation="MQDEEKRPLHLEPPPYLSPTPPIPTPAEGQTSGPPSGETERLDP
                     TRYGDWEKNGIAVDF"
     gene            complement(8538..9518)
                     /locus_tag="VE968_05765"
     CDS             complement(8538..9518)
                     /locus_tag="VE968_05765"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HZU51368.1"
                     /translation="MKIGVIGGGAWGTALAQVASEAGQETLLWALEPEVVAAINDRHV
                     NPIYLSGVALNPWIRATSELGDLYECDAWLLVTPAQHMRTVLAQASDCEKPLVLCSKG
                     IEEVSGKFLHEVASKVCPRAPVAVLSGPTFAHEVAKRLPTAVTLATENRSIADKLRAR
                     LAQPTFRIYLSEDVTGAEIGGAVKNVLAIACGVVDGKQLGENARAALIARGFAEMTRF
                     GVAFGARRETLAGLCGLGDLVLTCSSTNSRNFSLGKGIGEGRSAAELLIDRRTIAEGA
                     FTAPVLARLARERRIDMPIVEAVDALVSGRANVDQVLDALLSRPLRAEGI"
     gene            complement(9515..>9850)
                     /locus_tag="VE968_05770"
     CDS             complement(9515..>9850)
                     /locus_tag="VE968_05770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HZU51369.1"
                     /translation="IAASFQQAVVDCLVDRTRAALEKTNVPTLVVAGGVAANRSVRVA
                     LENLADAYDRRFSVPPIALCTDNAAMIAWAGVERFASGRQDPLDVPARARWPLDQSAE
                     KVRGAGVKA"
BASE COUNT         1970 a         3086 c         2808 g         1986 t
ORIGIN      
        1 cgacggcgct tcctcgacga ccttttggtg ccggcgctgg atcgagcatt cgcgctcgtt
       61 caggtaaaca atgtttccat gcttgtcgcc aagtagctgg atctcgatgt ggcgtggctg
      121 ttcgatgaac ttttcgataa acacgcggtc gtcgccgaaa ctgttcagcc cttcgcgctt
      181 gacgctatca aatccttccc ggacatccgt ttcgttccag gctaggcgca ttcccttgcc
      241 gccgccgcca gccgatgctt tcatcattac tggaaagccg atgtctccgg cgatttccac
      301 cgcttcgtcg gtcgtcgcaa tatcgccgag gtagcccggc acgacattga cccccgcggc
      361 ctttgcgagt ttttttgatt caatcttgtc gcccattgcc gcaattgcgc tcggcggcgg
      421 tccaatgaat gcaattccgg catcctcgag cgctcgagca aagctttctc tctcggacaa
      481 aaagccgtag ccgggatgca cagcctctgc accggttact cggcaggcat cgatgatcag
      541 ttcggccttg aggtaagact cactcgccgg cggcgggcca aggcgcaccg actcatccgc
      601 cattagcacg tgcggagcgc gcacatccgc atcggaatag acagcaacgg tctttatgcc
      661 catgcgccgc gccgtgcgga tcactcggca ggcgatctcg ccgcggtttg caatcaggat
      721 tttcttgaac atcggcgtga ccgtttaacg acgctgatca agccaacaag atctattcgc
      781 cgaagatagc ggcaacgaca tcgcggcgcg ctctcgacca acaccatgcg ccaacctctt
      841 ctcgcatttg tcactccgcc gcttcatcga gcggcggcct gttgtgtccg agcaagcgaa
      901 gaatctcatc cgcggcgtcg gcaaggtttg taccgggacc aaagatcgcc tgaacgccag
      961 cggcgcggag cattggatag tccttcgccg ggatcactcc gcctacgacc actttgatgt
     1021 cgctgcgtcc catgtccttc agaacttcga tcatctctgg gatcagcgtt cggtgaccag
     1081 cggccagcga gcttgcgcca actacgtcga cgccgtgatc gattgccatc ttcgccgtct
     1141 ccgcgggagt ctggaacaat ggtccggcaa cgacatcgaa gccgaggtcg gcgaaggccg
     1201 aggccacgag gttcgctcca cgatcgtggc catcctgccc catctttgca accatcagtc
     1261 tgggcttgcg gccaaggcgg cgaccgacgg cggccgtccc ttcaacggcg gcgctccacc
     1321 gggagtcgtc ccgggcggca ccgtaaattc ctcgaactgg ctcgggtttc gtgccgtagc
     1381 ggccaaaggc acgctccagc gcatcagata tttcgccaag tgtgcatcgg gctcttgccg
     1441 cttcaatgct gagagtaagg aggttctctt tgcctcgagc acccgcttca agcgcatcaa
     1501 gcgctgcacg aactttcaac tcgtcacggc ccgcgcgcac cttttccatc cgagcgattt
     1561 gcgatgctct gacgcgcgca ttgtcaactt cgaggatgtc cacttccggt tcgtcttcga
     1621 gtcgatatcg gttgacgcca acgatgaccg tctcgcccgt gtcgaccttg gccgcgcggg
     1681 cggcggcggc ttcctctatg cgatgctttg ggagaccttc cgcgacggcc ttcgtcatgc
     1741 cgccatgcgc ctcgacttct tcaatcagcg cccaggcctt ctcttcaagc tcgcgcgtca
     1801 gcttctcgac gtagaagctt cctccgagag gatccgcgac cgcggtgacg ccgctttcct
     1861 ccgcaagaat aagctgagtg ttgcgcgcta ttcgcgcgga gaaatccgtc ggtagcgcga
     1921 tcgcttcgtc aaaactgttg gtgtggagtg actgagtgcc accgagcacc gctgctaaag
     1981 cttcaatcgt tgttcggatg acattattgt acgggtcctg ctcggtgaga ctgacgccgg
     2041 atgtctgaca atgggtgcgc agcctcttcg actcttcttt ctcggcgccg agctcactca
     2101 tgatccggtg ccacagcgtg cgcgctgcgc gaagcttcgc aacctccatg aacaggttca
     2161 tgccaatgcc gaaaaagaaa cttagccttc cggcgaactc gtcgatctga agcccgcggc
     2221 tacaggcagc gcgcacatat tccatcccgt cggcaagcgt gtaggcaagc tcctgtacgg
     2281 cagtcgcccc ggcttcgtgc atgtgataac cgctgatcga gatcgaattg aacttcggca
     2341 tttcgcgcgc gcaataggca atcacgtccg aaacgatccg catgcttggc tcaggcggat
     2401 agatgtaggt gttgcgaacc gcgaactcct tgagaatgtc gttctggatt gttccagtaa
     2461 gcttggcgtg ggcgacgccc tgctcctccg cggcaacgat gaagaacgcc atgaccggaa
     2521 gcaccgcgcc attcatcgtc atgctgacgg acatctgatc gagcggaatt ccgtcgaaca
     2581 agagtttcat gtcctcgacg gtatcgatcg caacacccgc catcccgaca tcgcccgaca
     2641 cccgcggatt gtcgctgtcg tatccccggt gcgtcgcaag gtcgaaggcg acggaaaggc
     2701 ccttctgacc cgccgcgaga ttgcgtcggt agaatgcatt cgattcttcc gccgtcgaaa
     2761 acccagcata ttgcctgatg gtccacggcc gccccgcata catcgtggca tacggaccgc
     2821 gcgtgaaagg cgcgataccc ggatagccgc tatcgatgcc cgcagcatcc tctgctccgt
     2881 agacagtgtt gatccgtatg ccttcgacgg tttctcgcgt gagatctttt ccgcgtgatt
     2941 cctttgcgcg gagaacgtcc caatcggttt tcgacagctt tttactcaca ggagcgcact
     3001 agcgcggctg caaacgaacc tccagcgccc gggtggccag gcggccgacg gtcgattgca
     3061 cgatgattcg aaccctcccg cgagcgcgcc cgtcactgaa cggtgtcggt gacgttggca
     3121 gctctcgaga acaaagcggt ggaccgctag tgacggaaat ggcgcatgcc ggtgaaaagc
     3181 atcgcgagac cggcctcgtc ggcagcagct ataacctctt cgtcgcgaat ggaaccaccg
     3241 ggttggatga cggccgttgc gcccgcatcc gcagctgcga gaagtccgtc tgcaaacggg
     3301 aagaatgcgt cagatgcgac cgcggaaccg actgtccgtg gctccggcca gccattcatc
     3361 gctgccgctt caaccgcctt tgcggcggcg atccgcgcgc tgtcgcgcct gttcatttgt
     3421 ccggcaccga ttcccgccgt tgctccatct ttggcataga cgatggcgtt cgattttacg
     3481 tgcttcgcaa cggtccaggc gaaaaggcag tcccgcaact cccgttcgct tggctgacgc
     3541 ttcgtcacac attttagctg ctcgcggtga accacgccat tgtctcggtc ctgcaccaga
     3601 attccgccgg caatgaccgc gatcgattga ccgccacgcg agggatcggg caagtgacca
     3661 gttaaaagaa ggcgtaagtt cttcttgcgc gcgaacactt cccgtgccgc atcatcggcg
     3721 tcgggtgcga cgaccacctc ggtgaaaata tcggtgatcg cctcggcggt agcgcggtca
     3781 agtgagtgat tggcggcaac tatcccgcca aatgccgaga cgctgtcgca ggcaagagca
     3841 tcggtccatg cctcaaggag gctatcgcgt gttgcaacgc cgcacgggtt cgcatgcttc
     3901 acgatcacga ttgtcggcgc ctcgtccctg aactctgcgg cgagttcaag cgctgcattg
     3961 gcgtcattca gattattgta gcttagctcc ttgccctgga cctggtcggc ctgggcaata
     4021 ccgcgcgccg ctgggccaat cggtacgtaa agcgcagcct gctggtgcgg gttttcaccg
     4081 tatcgaagtg gcatcttaag gctgctcgcg cgcgcccaag tctcagggaa acgctcgccc
     4141 tggtcggcaa aagcaaacca ctgggagatc gttgaatcgt acgctgcagt gagggcaaat
     4201 gccttggctg caagcttttt acgcagctca agagaagtgc taccgccggt tgcgtcaagc
     4261 tcatccagca gcgtcgcata gtcggcgggg tcggtgatga tcgcgacgtg cgcgtggttc
     4321 ttcgccgccg agcggaccat cgaggggccg ccgatgtcga tattctcaac gatggtttcg
     4381 cgcgtcgcgc cgctcataac cgtgttgagg aaaggataca gattaacgac aacgagatcg
     4441 atcggctcga tgccgtgctg ctccattgcc tttgcatgtt cagggttgtc acgaacgccg
     4501 agaagaccgc cgtggaccaa ggggtgcagt gtctttacac ggccatccat catttccgga
     4561 aatccggtga ggtcgctgat gtcgcgcacc tgcgcgccat agtcgcgaag cttcgcagcg
     4621 gttccgcccg tcgacaccat ctcgacctgg tgtttagcga gacctgccgc gagttgctga
     4681 agtccgccct tatccgaaag agaaatcagt gccctacgaa cagggacgaa gtcgatcatt
     4741 ggaggtcctt tgcgaaaggt cagctggcgc gccggaacgt ccagccaatt tcgccaccca
     4801 atgccgatac ttctcctacg atgacaagct gacttgtgcg atgaggccgg ccgcggccat
     4861 cgatccacaa gctctcctcg ctgatgagat tgccgccccg acagcggaag ttccatgctg
     4921 gagcgccttt tgagcgaagg attgccccca tcccgtcagc cgtgatcgtc gcctcgacac
     4981 ccggagcaag gtgaaatcgc acagcgtaag gagcggattc gcgaatcttc ttccggccgc
     5041 gtgccgtcag ctggtcagcg ccgcgcaact ccttgccatc attaccaagc atcaaactgc
     5101 gcttgtgaac cagtccaaac gcgcggacat agccgtcgtg acttgcctca atgcgactgg
     5161 catcattgtc ctcgctgcgg tcgattgcga catcctctac gcctttgccg agtgagccgt
     5221 ccgcgagaat atttgttgag ttggtgtcgg agagcacaag cgtgctctgt gccgcagttg
     5281 tcctcaaggc ctgcagtagc tcctgcggaa gatcgcttgg aactgggccg ggacccccgc
     5341 agttgaccac gagccgctgc gagccgtcgg agagctcgaa tgccaaagtc gaggcggagc
     5401 cgcgttccgc aatcttttgt ggcggcggcg gcgcagcatc gatcagacaa tcgtgccaag
     5461 tgccgacaag cgctgatagc cccatccgcc agcgtggcgc agaggacgtg cacgcatccc
     5521 gcagccgtcg atgaggtcgg cgatccgagc actatccgat ggcccgcagc cctgccagct
     5581 cgagagtgct ccatcgccca tcatgatccc gtggagcgcg gctaatgatg cctgtgcggc
     5641 agcctctata ccgtcgggaa ttgtctgttt ggccgcgaca tagcaggcgc gaaggagacc
     5701 aagacgatca acgaggcgga tctgctcata gggagagcgg ctcacgagcc caccgtcatc
     5761 gaactgagct ccggccaagg cgggcgcaag ccccgcttcg ccgcgtgcga cacggggcac
     5821 ccctccctgg acgagcagac cagcagcaac gacaccacac caggccgtta cgcgatcaag
     5881 gcccggcggc gccttgtcgg cgtttgaatc aagatgcctt gccccgcgcg cgagcgtgtt
     5941 caggagtgcc gaccggtagc cgctatctcg gctggacaag atgtagggcg cataagctgc
     6001 ccagaagagg atgcgttcgc cccacaggtg cggcgcccag gcatcatcga ccttcgcacc
     6061 atgtgcaaga agccaccgac caacgaccgc ttcggcaaga cgcgcgcctt tttcccgtga
     6121 tgcagctgcg gctaggtctc ggagccacga aaagctctga agctgcgcgg caagtgggct
     6181 ctttgtgccg acttcgccga aatcgagatc cttgagcgtc agcgtttcgg caccaaccgt
     6241 gaaacggccg gcaagcaacg cttctccatt cgatcgttcg ccatggacat gatcccgtgg
     6301 gaccgccaca agcttcagcg gctgcttgga tcggcgtaat cgcgaaaata gggaaccacg
     6361 agcaagcttg cccacgatgg cgcgttcggc ggccgatccg tcgcggttca acttggacct
     6421 ctcagggcat cgatgttcga cctgtatgcg gaaggtccac ctcggaacgc agctgttcca
     6481 gcaacaagtg ctgttgctcc tgctccgacc gcctgccgtg ccgtttcggg atctattccg
     6541 ccatctacct cgagctcgat ttcaagacca agttgaacga tccgctctcc aatcgattca
     6601 atctttctca actggcttga gatgaacttc tgacctccaa atccaggatt gacgctcatc
     6661 accaggataa ggtcaacatc ctcaaggaca taatcgagtg ctatctcggg tgttgcggga
     6721 ttaagtgcga cgccagccct ccggccaagg gccctgatgc gctggacggt ccgatggaga
     6781 tgagcgccgg cctcgggatg gactgtaatg atatccgctc ccgcatcggc gaaagcatcg
     6841 atgaatggat caacgggagc aatcataagg tgaacgtcga aaggcttctt cgtatgcgaa
     6901 cgaagggcct tcacgactga tgggccgatc gtcaggttcg gaacgaagtg cccgtccatg
     6961 acgtcgatat ggatccaatc ggcgcccgcc tcgtcgattg cacgcacctc gtcgcccaat
     7021 cgggcaaaat cggccgatag aatggagggg gcaatgacgg gcatagtcct gattaaacgc
     7081 gattaacgga ctcggacaag gcgcgcgatg aagaagccgt cgaggcctcc ttcttcttcg
     7141 atcagcccgg gcaagatccg gacccatccc tcgcttgaga tcggaacgaa gtgtggcagg
     7201 ttggaagggc catcaatggc gaagtccgag gaatgacgaa ggaagcccct aatcacctct
     7261 tcgccttccc taatctcgag cgagcacacc gaatagatga ttgtcccgcc cactttcagc
     7321 catcgcgacg cacgatcgag caagactgct tgctgctcgg cggaccgagc aatcacatcg
     7381 gagcgcgctc ggtagagaac ctcaggatgg cgtcgaaacg tcccggtcgc tgagcagggc
     7441 gcatcaagaa gaattgcatc gaactcaatc ggtggagtcc agtcaactgc atcagcttca
     7501 acgagctttg cggcgaggtg cgtccgattg agattttctt ctagtcgtct gagacgacta
     7561 gtcgatgaat cgacagccgt gaccgaatga ccagcagccg agagttgcat cgtcttcccg
     7621 ccgggagcag cgcacaggtc cagcacgttg acagcattgc tcgggacaag tcgcgccggc
     7681 aatgaggcgg caagatcctg gatccaccaa cttccttctt cgaagtcggg aaggtcttca
     7741 acggaacggc tttgcagacg gacatggcct gatgcgagcg agcaccctcc attctgttcg
     7801 gcatagcgct gagcgagcag tgggcttgca aaagtgagat cgagatccgg tcgccggaca
     7861 atctggcgtc gggcagcaag caccgcttct tttccccacc actcacccca gcgctcctcg
     7921 accggattcg gcagtttcga agaatttgct acgggaactc cgcgccgaag taatgttccc
     7981 aatattccat gcgcgagacg tcggggtccg ccatcgagta gtggcagagc cgttgaaacg
     8041 acggcgtggt ccggcgttcc gagtccaacc ttctgcgcaa gagcaagtcg aagaaccgcg
     8101 cgtgccttgc tgtcggacgg cagccgtgtt cgcgtcgtgc tgtcgataag ctcgtcgata
     8161 tcacgcaggc ggcgtaatgc ttcgccggcg atcgcaatgg ctagtgccaa gtcgttggga
     8221 gcaagattgc gcccatttgc gcttgcggca tcaatggttc gtccgcgtcg gagtacttga
     8281 tcgagtatct gaagcgcaac tcggcgcgcg gcgacgcctt caacgcttgg catcggtgca
     8341 tccaatcatc atcttgatcg catgcaagac gaagagaagc gacccctcca cttggaaccg
     8401 ccgccctatc tctctccaac gccgcctatt ccaactcctg cggagggaca gacgtccggt
     8461 ccgccttcgg gcgaaacgga acggctcgat ccgacacgtt acggcgactg ggaaaagaac
     8521 ggcatcgcgg tcgatttcta aataccttcc gctctgagtg gccgcgatag caacgcatca
     8581 agtacctggt ccacgtttgc gcggccactt accagcgcat cgacggcttc cacgatcggc
     8641 atgtcgatgc gcctttcccg cgcgagcctc gcgagcaccg gtgccgtaaa ggcgccctcg
     8701 gcgattgttc gtcgatcgat cagcagctct gctgcacttc ttccttcccc aatccccttc
     8761 cccaacgaga aattgcgtga gttcgtagaa gagcaggtga gaacgagatc accgagcccg
     8821 cacagcccgg cgagggtttc acggcgagcg ccaaatgcca ctccgaaccg cgtcatttct
     8881 gcaaaaccgc gcgcaatcag cgctgcccga gcattttcgc caagctgttt tccgtcaaca
     8941 acgccacacg cgattgcaag cacgttcttg acagcacctc caatctccgc gccggtgaca
     9001 tcttccgaaa ggtaaatccg gaacgtcggc tgcgcgagac gcgcgcgaag cttgtcggca
     9061 atagaccggt tctccgtcgc aagggtaacc gccgtcggca acctcttcgc gacttcatgc
     9121 gcaaatgtcg gtccggacag gaccgcaact ggggctcttg gacagacctt gctcgccact
     9181 tcatgcagga actttccgct aacctcctct atgcccttgg agcataggac aagcggtttc
     9241 tcgcagtcgc ttgcctgcgc gagaactgtt cgcatgtgct gtgccggcgt aaccaggagc
     9301 catgcatcgc actcgtacag atctcccagt tctgacgttg cacggatcca aggattgagt
     9361 gctacgccgc tgaggtaaat gggattcaca tgccggtcat tgatcgcagc gacgacctcc
     9421 ggctcaagcg cccacagcaa ggtttcttgt cccgcttctg aagcgacttg cgcaagcgcg
     9481 gttccccatg caccgccgcc aatcactccg atcttcatgc cttgacgccc gcgccgcgca
     9541 ccttctcggc actttgatcg agcggccacc gggctcgtgc gggaacatcg agaggatctt
     9601 gtcgcccact cgcgaatcgc tcaacgccag cccaggcgat catcgctgca ttatccgtgc
     9661 acagagcgat cggcgggacg ctgaaccggc gatcataggc gtcagcaaga ttttcaaggg
     9721 caaccctcac cgatcgattg gcggcaacac ccccggcgac aaccaacgtt gggacgttcg
     9781 tcttctcgag cgcggcacga gtccgatcaa cgaggcagtc aacaaccgcc tgctgaaagc
     9841 tcgcggctat
//
LOCUS       DASRBJ010000208         3172 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_630626,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000208 DASRBJ010000000
VERSION     DASRBJ010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_630626"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            14..166
                     /locus_tag="VE968_05775"
     CDS             14..166
                     /locus_tag="VE968_05775"
                     /inference="COORDINATES: protein motif:HMM:NF015436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51370.1"
                     /translation="MVFLLAGHIPQKGECVTHPSGWKLEAVDSDPGRIIRVRLHAPEE
                     SGGEAD"
     gene            complement(163..585)
                     /locus_tag="VE968_05780"
     CDS             complement(163..585)
                     /locus_tag="VE968_05780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010234750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HZU51371.1"
                     /translation="MASTVFHLAFPVDDLGAARHFYGGILGCPEGRSADEWIDFDLFG
                     HQIVAHLAPDQVHRRSTNEVDGEHVPVPHFGLVMAMDEWKRLADKLKAAEVAFVIEPT
                     IRFRGQPGEQATMFLLDPAGNALEFKAMANPANLFAKN"
     gene            663..2174
                     /gene="lnt"
                     /locus_tag="VE968_05785"
     CDS             663..2174
                     /gene="lnt"
                     /locus_tag="VE968_05785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006497 - protein lipidation [Evidence
                     IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HZU51372.1"
                     /translation="MLYLFYALLAGAASAFAFEPTSLWPVLPVAFAFLCEFAWRSKTI
                     LRAFLVGWTFGLGQFVVGLNWIATAFTYQSAMPAWLGWIAVVLLSFYLAIYPAVATGI
                     AWRLGRNDRVALVTVLGGAWAITEWLRGTMFTGFPWNPAAAVLASTPLIRITALIGTY
                     GLSGVVVLLGGAIWLEYYRKWLPLLVIVGATAFLWVLPASSVPSDPLAVLNVRIVQPN
                     IGQENKWRPGFEDESARRLAALSGPPSNEPRLLLWPEAAVTEPLQDGRTDEHQALAQF
                     ERRSAASLLGPSDRLLTGGIAINSSDGVNVSGAENSIFVIAPGGRILARYDKAHLVPY
                     GEYLPMRPLLSAIGLSRLAPGDLDFTPGPGPRTIDLGGQWGKVGLDLCYEIIFSGHVV
                     DEKNRPGFIFNPSNDAWFGRWGPPQHLAQARLRAAEEGLPVLRSTPTGISAVIDARGN
                     IVKLLPWRTPGVIDAVLPPAAAPPPFARFGNIIPLILGFVLVIGGIVLGRSRR"
     gene            2228..>3172
                     /gene="metK"
                     /locus_tag="VE968_05790"
     CDS             2228..>3172
                     /gene="metK"
                     /locus_tag="VE968_05790"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007684819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HZU51373.1"
                     /translation="MRSSYLFTSESVSEGHPDKVADQISDAIVDLFLSKDPEARVACE
                     TMTTTNRVVLAGEIRGQGIMDQEGNWAPGIREEIENAVRGVVKRIGYEQQGFHWDQFD
                     FANHLHPQSAHIAQGVDAGENKDEGAGDQGIMFGFACDETPDLMPATLDYSHKILMEM
                     AKDRHSGAAPFLEPDAKSQVTLRFEEGKPAKATAIVVSTQHKPGYDKGEKQAQLHAYV
                     KDVVARVMPAQLLGNETVYHINPTGSFEIGGPDGDAGVTGRKIIVDTYGGAAPHGGGA
                     FSGKDPTKVDRSAAYAARYLAKNIVAAGLARRCTIQLAY"
BASE COUNT          593 a          985 c          947 g          647 t
ORIGIN      
        1 cacgcttggc gggctggtat ttctgctagc cgggcacatc ccgcaaaaag gcgaatgcgt
       61 aacgcatccg tccggatgga agctcgaagc agtggactcc gaccctggcc ggatcattcg
      121 agtgaggctg catgcgcccg aagaatccgg cggtgaagcc gactagtttt ttgcaaacag
      181 gttcgccggg ttcgccatcg ccttgaattc gagcgcattg cctgcaggat cgagcaggaa
      241 catggttgcc tgctcgccgg gctggccgcg gaagcggatc gtcggctcga tcacgaacgc
      301 gacttcagcc gccttcagct tgtccgcgag ccttttccat tcgtccattg ccatgaccag
      361 cccaaaatga ggcacgggaa cgtgctcgcc gtcgacctca ttggtcgacc gacgatgcac
      421 ctgatcagga gcaaggtgag cgacgatctg gtgaccaaag aggtcaaagt cgatccattc
      481 atccgcgctt cgcccttcgg gacacccgag aatgccgcca taaaaatgcc gagccgcgcc
      541 gagatcgtcg acgggaaatg ccaagtggaa aacggtcgaa gccatggaat gatcactgct
      601 cgggaagaag gcggttgtcg aggctttcgt taagtcatcc cagcagctag ccagcgagcc
      661 agatgcttta tcttttctat gccctgcttg ccggtgcggc atcggccttt gccttcgagc
      721 cgaccagtct gtggcccgtg ctcccggtcg cctttgcatt cctttgcgag ttcgcctggc
      781 gctccaagac gatcttgcga gcgttcctcg ttggctggac gttcggtctc ggtcagttcg
      841 tcgtcgggct caactggatt gcgaccgcct ttacctacca gtctgcgatg cccgcttggc
      901 tcggctggat cgcggtcgtt ctcctctcat tttaccttgc gatctatcct gcggttgcaa
      961 cgggaatagc gtggcgcctc gggcggaatg atcgggttgc gcttgtgacg gtgcttggcg
     1021 gcgcctgggc gattaccgag tggcttcgtg gcacaatgtt caccggcttc ccctggaacc
     1081 cagcggcagc cgtccttgct tcaacaccat tgatcaggat cacggcgctg attggcacct
     1141 acgggctgtc cggagtcgtt gtcctgcttg gcggcgcaat ctggcttgaa tattaccgca
     1201 agtggctgcc gcttctcgtc atcgtcggcg cgaccgcgtt cttgtgggtt cttcccgcct
     1261 cgtcggttcc aagcgatccc ctggcggtct tgaacgttcg aatagtccag ccgaacatcg
     1321 gccaggagaa caagtggcga ccgggtttcg aagatgaatc ggcgcggcgt ctcgccgcgc
     1381 tttctggtcc cccgtcgaac gagccccgcc tgctcctttg gcctgaagcg gccgtcaccg
     1441 aaccgctcca ggacggtcgc accgacgaac accaggcgct cgcgcaattc gagcgacgca
     1501 gcgccgcttc cctgcttgga cccagtgatc gcctgctgac tggtggaatc gccattaact
     1561 cgtcggacgg cgtcaacgtc agcggggcgg agaacagcat tttcgtcatt gcaccgggcg
     1621 ggcgaatcct cgcccgatac gataaggctc acctcgtccc ctatggggag tatcttccaa
     1681 tgcgcccgct cctctcggcg atcggtctgt cgcgtcttgc tcctggcgac ctcgacttca
     1741 caccgggtcc tggaccacga accattgacc ttggcggaca atgggggaaa gtgggcctcg
     1801 acctctgcta cgagatcatc ttctccgggc acgtggtcga cgagaagaat cggccgggct
     1861 tcatcttcaa tccgtcgaac gatgcctggt tcggacggtg gggaccccca caacacctgg
     1921 cacaagcccg gcttcgcgcg gcggaggaag gtctaccagt actgcgctcg acaccgaccg
     1981 gaatcagtgc cgtcattgat gcaaggggaa atatcgtcaa attgctgccg tggcgcacac
     2041 cgggcgtcat cgacgcggtg cttccgcccg ctgctgctcc tccgccattt gcccgctttg
     2101 gcaatatcat cccgctgatc cttggcttcg ttctcgtgat cggcggcatt gtgctggggc
     2161 gcagtcgccg ctaggaagca catataaagc tttccttata tccttgaatc ggggacctcc
     2221 tactctcatg cgcagctctt atctgtttac gtccgagtcc gtttccgaag gccaccccga
     2281 caaggttgcc gaccagattt ccgatgcaat tgtcgatctc ttcctctcaa aggatccgga
     2341 agcacgcgtt gcatgcgaga cgatgacgac gacgaaccgg gtcgtcctcg ccggggagat
     2401 ccgcggccag ggcatcatgg accaggaggg taattgggca cccggaattc gcgaggaaat
     2461 cgagaatgcg gttcgcggcg tggtcaagcg cattggctac gaacagcagg gcttccactg
     2521 ggaccagttc gactttgcaa atcacctgca cccccagtcc gcgcacatcg cgcaaggcgt
     2581 cgacgcgggc gagaacaagg acgagggcgc cggcgaccag gggatcatgt ttggttttgc
     2641 ctgcgacgag acacccgacc tcatgccggc gacgctcgac tatagtcaca agatcctgat
     2701 ggagatggcc aaggatcgcc attcgggcgc cgctccgttt ctcgaacccg acgccaagag
     2761 ccaggtgacg ttgcgctttg aagaagggaa gcccgcaaag gcgacggcga tcgtggtctc
     2821 gacgcagcac aagccgggct atgacaaggg cgaaaagcag gctcaacttc acgcgtacgt
     2881 caaggacgtc gttgcgcgcg tgatgccggc gcaactgctt ggcaacgaga ccgtgtacca
     2941 catcaaccca acgggaagtt tcgagatcgg cggtcccgac ggcgatgccg gagtgactgg
     3001 acgaaaaatc atcgttgata cttatggcgg cgcggcgccg cacggcggcg gcgctttctc
     3061 aggcaaggat ccgaccaagg tcgaccgctc cgctgcctat gcggctcgct accttgccaa
     3121 gaacattgtc gccgccggcc ttgcaaggcg ctgcacgatc cagctcgcct at
//
LOCUS       DASRBJ010000209         3769 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_326913,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000209 DASRBJ010000000
VERSION     DASRBJ010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3769)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3769
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326913"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            268..669
                     /locus_tag="VE968_05795"
     CDS             268..669
                     /locus_tag="VE968_05795"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HZU51374.1"
                     /translation="MTFGRAVDVYGQFTVVYPRNVRIGANCGINHDVFILGRCGIDIG
                     DDVVLSARVMLIDAGLDPATFEVPAERKYIDGPIRVGRGVWIGAGAIILPGVRIGERS
                     IVGAGSIVTRDVPARSIVAGNPARLIRKIDD"
     gene            complement(691..1383)
                     /locus_tag="VE968_05800"
     CDS             complement(691..1383)
                     /locus_tag="VE968_05800"
                     /inference="COORDINATES: protein motif:HMM:NF015527.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase family 2 domain-containing
                     protein"
                     /protein_id="HZU51375.1"
                     /translation="MSGIRQYIRNLEYSLPVPLQRPLIRAVRESPYVLDYDASHSIFI
                     HIPKTAGTSIGEAIYGHWVGHVPLSRFAAFDDRKFKSFFKFSFVRNPWDRLLSAFAHL
                     KGGGEPLARREALWSERYLGNIESFEQFVLALRDGEFRSVIVGDVHFRPQLDWITLPG
                     SERIAVDYLGRFESLEEDYSQVTHRLGIAGNLPMRKQTKRPRYRDAYSAEMSKIVEEI
                     FRNDIERLGYDF"
     gene            1624..2406
                     /locus_tag="VE968_05805"
     CDS             1624..2406
                     /locus_tag="VE968_05805"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HZU51376.1"
                     /translation="MRELLNRLVRRRALQPFWQALHGISLVSMNFWANRLRSTGEHEA
                     VRYAARKLPRAPRPIIFDVGANVGEFSELCCATFHEPDVYAFEPSLATFDILNNNLAR
                     ANANVSTHRLGFSDEPRDAQLYSSEPGSTIASVHQLERPIRPFHDRFTEIIKLATIDD
                     FCRERGIDRIDYLKLDIEGHEYHALVGAHGLLSAGAIRFIQFEFGENNVSSRTYLNDF
                     IKLLGDRYDFYRIVPGGLVPWRYRGGRSEIFATMNYLCERRD"
     gene            2475..>3769
                     /gene="asnB"
                     /locus_tag="VE968_05810"
     CDS             2475..>3769
                     /gene="asnB"
                     /locus_tag="VE968_05810"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HZU51377.1"
                     /translation="MCGIVGVFGGPRIDPAILERMTRALAHRGPDHEALWFDHEATIG
                     FGHRRLAIVDLSPAGEQPMLSPSGRFVISFNGELYNHLDLRRELADAGHEVAWRGHSD
                     VETLLAGFDFWGIKPTLIRTRGMFAFGLWDRQDRTLTLARDRLGEKPLYYGRQKGPKS
                     PFLFASELKALRQHDGFDADVDREALGLFVRYLDVPAPKSIYRGISKLRPGTILTLAE
                     RSAEPKIEEYWSGAAVARNGTTNPVDLAPEQAVDELERILERAVRRQMMSDVPLGAFL
                     SGGIDSSTVVAMMQKVSSRPVRTFTIGFHEEGFNEAEHAQAVARHLGTEHTELYVTAG
                     EAMDVIPSLPTMYDEPFADSSQIPTHLVAALARRHVTVSLSGDGGDELFGGYNRYLLT
                     ANFWKRIAGIPAPLRATAARILTLVSASTWTSLGDAAAGL"
BASE COUNT          752 a         1082 c         1140 g          795 t
ORIGIN      
        1 aaggacgacc ccaagcagga aggtgctgcc gagaccagcg atccgcagaa gcaagctgtt
       61 gaagctcgac atgagcatag cttgctgttc gacaatgaaa ctgcgggccg gccctataga
      121 gggaaatctc attgcctgtc gttcgtagcg cgcatacctg ttcccccggc cgagctgaca
      181 agcacaaggc ggactaattc accccatgat cgggagcgtg gtttgtttgc aaggctaaag
      241 cgtcgctggc tagccttaaa ggggcggatg acgtttggtc gcgccgtaga cgtctacggc
      301 cagttcacgg tcgtctatcc gcggaatgtc aggatcggcg cgaattgcgg catcaatcat
      361 gatgtcttca tcctcggccg atgcgggatc gacatcggcg acgatgtcgt tctgtcggcg
      421 cgagtcatgc tgatcgacgc cggtctggac ccggccactt tcgaagtccc tgcggaacga
      481 aaatatatcg acggccctat ccgcgtcggc cggggcgtct ggatcggcgc tggcgcgatc
      541 atactgccgg gcgttaggat cggtgagcgg agcatcgtcg gggccggatc gatcgtcact
      601 cgagatgttc ccgcccgctc tatcgttgcc ggcaacccag cgcgcctgat tcgcaagatt
      661 gatgattgaa gctcatccat tcgctcgcag tcagaaatcg tagccgagcc gctcgatatc
      721 attgcgaaaa atttcttcca cgatcttgct catctcagcg ctgtacgcgt cccggtaccg
      781 gggccgtttg gtttgcttcc gcattggtag gttgccggcg atgccgagtc ggtgcgtcac
      841 ttgcgaatag tcctcctcga gcgattcgaa cctgccgaga taatcgaccg caatccgttc
      901 gcttccgggc agggtgatcc agtccaactg tggcctgaaa tgaacgtcgc caacgataac
      961 cgagcgaaac tcaccatcgc ggagagccag gacaaactgt tcgaagcttt cgatgttgcc
     1021 cagatatcgt tctgaccaaa gtgcttcgcg ccgcgcgagg ggctccccac cgccctttag
     1081 atgagcgaag gcagacaaga gccgatccca cggattgcgc acgaacgaga atttgaagaa
     1141 gctcttgaat tttcgatcgt cgaaggcagc gaagcggctg agcgggacat ggccgaccca
     1201 gtgaccgtaa atggcttctc cgatgctcgt tccggcggtc ttcggaatgt gaatgaaaat
     1261 ggaatggctc gcgtcatagt cgagtacata cgggctctcg cgaacggcac ggattaaagg
     1321 ccgctgcaag ggtaccggca gcgagtattc aagattacga atgtattggc ggatcccgct
     1381 cattcttctg cgaaattgtg atgagatacc ctaacgaaag tttgtacagt aatgagcgag
     1441 gctggcaatc cttgcgctcc atttagtttt tgttggaaat agggcggcgt catccctgtc
     1501 gattaattca gggcctatcc acgttcgggt gacgtggggc ggcccaatgt gaacaatgac
     1561 attccgtccg acctgtccaa tcggagcatt gaacggcaag ggcgcatcgg aggttcgaat
     1621 tgaatgcgcg agttgcttaa caggctggtg cggcgtcgcg cattgcaacc attctggcag
     1681 gcgcttcacg gaatcagcct ggtcagcatg aatttttggg caaaccggtt gaggtcgacc
     1741 ggagagcatg aagcggtgcg ctatgccgct cgaaagttgc cgcgcgcgcc ccggccgatc
     1801 attttcgatg tcggagcgaa cgtcggcgag ttctccgaac tttgctgcgc gacctttcac
     1861 gaaccggatg tgtatgcgtt cgaaccgtcg ctcgcgacct tcgacattct caacaacaat
     1921 ctggcgcgcg cgaatgccaa tgtgagcacg catcgcctcg gatttagcga cgaaccgcgc
     1981 gatgcccagc tgtattcgtc ggagccgggg tcgacgatcg catcggttca ccagctcgaa
     2041 cggccgatcc ggccgttcca tgaccggttt acggaaatca tcaagctggc gacaatcgac
     2101 gacttctgca gggagcgggg catcgacagg atcgactatt tgaagctcga catcgagggt
     2161 catgaatatc atgcgctcgt tggcgcgcac ggactgctga gcgccggcgc aatccggttc
     2221 attcaattcg agttcggcga aaacaatgta agttcgagaa cttatctcaa tgattttatt
     2281 aagctccttg gcgatcgcta tgatttctac aggatcgttc cgggcgggct tgttccctgg
     2341 cgttaccgcg gcggacggtc cgaaattttc gcgacgatga actatctttg tgaacgccgc
     2401 gattgagctt cgcgccggag atttccccca acgttcgatt gtgcggatga ccgcctcgcc
     2461 gttatgggag aggcatgtgc ggcatagtcg gagtctttgg cgggcccagg atcgatccgg
     2521 cgattcttga gcggatgaca cgggcactcg cgcatcgcgg gcccgatcat gaggcactct
     2581 ggttcgacca cgaggccacg atcggcttcg ggcatcgccg cctcgcgatc gtcgacctct
     2641 cgccggcggg cgagcagccg atgctcagcc caagcgggcg cttcgtgatc agcttcaatg
     2701 gtgagctcta caaccatctc gatcttcgcc gcgagctcgc cgatgccgga catgaagttg
     2761 cctggcgcgg ccattcggac gtcgagacgc tgctcgcagg gttcgatttc tggggaataa
     2821 agccgacgct gatccgaacc cgaggtatgt tcgccttcgg actttgggac aggcaggacc
     2881 gaacgctcac gctcgctcgc gaccgtcttg gcgagaagcc tctctattat ggccgccaga
     2941 agggcccgaa gagtccattc ctgttcgcct ccgagctcaa ggcgcttcgc cagcacgacg
     3001 gcttcgatgc tgatgtggac cgcgaggcgc tcggcctgtt cgttcgttat ctggacgtcc
     3061 ccgctccgaa atccatctat cggggcatat ccaagctccg gccgggaacg attctgaccc
     3121 tggcggaaag gtctgccgaa cctaaaattg aggaatattg gtcgggcgcg gcagttgccc
     3181 gcaacggtac gaccaatccg gtcgatctcg cgcctgagca ggcggtcgac gaactcgagc
     3241 ggatcctcga acgagccgtc cgccggcaga tgatgtctga cgtgccgctc ggagcctttc
     3301 tgtccggagg aattgattcc tcgacagtcg tcgcaatgat gcaaaaggtc tcttcgcggc
     3361 cggtcaggac gttcacgatc ggatttcacg aggaaggatt caacgaggcc gagcacgccc
     3421 aggcggtggc ccggcacctt gggaccgagc acacggaact ctatgtcacc gcgggtgagg
     3481 cgatggacgt cattccctcg cttccgacaa tgtacgatga gccgttcgcg gattcgtccc
     3541 agattccgac ccacctcgtc gcggcgctcg cccgtcgcca tgttactgtg tcgttgtcgg
     3601 gggacggcgg cgacgagctg ttcggcggat ataatcgcta tctgctgacc gcgaacttct
     3661 ggaagcggat cgccggcatc ccggcgccgc tgagagcaac cgcggcgcga atcctgacgt
     3721 tggtctcggc gtcgacatgg acgagccttg gggatgcggc agctggcct
//
LOCUS       DASRBJ010000210         4096 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_735523,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000210 DASRBJ010000000
VERSION     DASRBJ010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4096
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_735523"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..647
                     /locus_tag="VE968_05815"
     CDS             <1..647
                     /locus_tag="VE968_05815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51378.1"
                     /translation="GTRNLYSAGEEEAALKEKPLSPFKSPSGFLMVFRSDLRRFDDLW
                     DLTIDQNEGNVIFAHDQWYFFLARALGEVRFVDEPLAIYRQHGGNTYGVPVSYSIGQR
                     LARRLIHYGTADEWAALSAKSRATILRLIAERDGLARLGQLAQSYDDLAERRARRAKT
                     YCRDSVAKRAAALLRSISAADYRGGAWAFEPASIARDAWSGVVQGKCKDPTRGC"
     gene            754..1881
                     /locus_tag="VE968_05820"
     CDS             754..1881
                     /locus_tag="VE968_05820"
                     /inference="COORDINATES: protein motif:HMM:NF026257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HZU51379.1"
                     /translation="MSDLAAARLIAQLTSREFSSGVKEHPEIDAELATKIVRIARVNK
                     LLKPVLKQFQAIGVPLPEEVKPDVAVYLRRSGKKNAKALATLREVTRKFSEAGILHAA
                     FKGPVRQILLGQDVFERPAADVDILVKYDDFARATALLKEMGYWIPLFCDSPWWRHYL
                     GEHALLPDDPNRLGVDLHHRTQQPSCPRPRHEEAMLNDLAWTEIGGERIPGFGPTSIF
                     LNTVMSIVKGLTNHEPVGQHVLDLARQLHAADGERLAAFDQAARYQALERSYAFARRA
                     VIALTGVSRVPTEQWVVPDDTLVAMLITPWDPSIQWPRHRQLLWDLVDGDSWFSRAMR
                     FTREIAWWTAAELTRRTHDVSRLPARMDEMDEKTAPAPAAL"
     gene            complement(1878..2291)
                     /locus_tag="VE968_05825"
     CDS             complement(1878..2291)
                     /locus_tag="VE968_05825"
                     /inference="COORDINATES: protein motif:HMM:NF033537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lasso peptide biosynthesis B2 protein"
                     /protein_id="HZU51380.1"
                     /translation="MLTFEAAVFLAIARAWLLIVPFRKIAETLGRSYSAAAPKNIIEP
                     ASQEQDEIATRVSEAVKRAAKNIPLHAVCIQQAIAAKMMLQRRGIRSVMHFGVARGLP
                     DSGDALRAHAWLQTANVEITGFPLDDDLKEIAYFV"
     gene            complement(2369..>4096)
                     /locus_tag="VE968_05830"
     CDS             complement(2369..>4096)
                     /locus_tag="VE968_05830"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HZU51381.1"
                     /translation="REVLGLARDFIEFGGRRAAAAILLMILAGLLESASLALLAPLFA
                     IFTNPGRDSAATKLFNFLLPPDATMSTKLALVLMLFVIVMAIRSVVMMARDRTNGLLQ
                     LEFGERLQVRLMEALGAARWQDIENLKHARIQQALGGSMGRVMSGTQLMLQGAVQFTM
                     LLAQWFMVLLLAPAVAVIFLVIAAIGAFPLVRALKGSSALGREMSSGGLTLVHTTSQL
                     LGGLKLSFAQNMQPAFVKEYARVARELKDRRFAYQRGQSSMRAALTVGAAIAGAILLW
                     VGYALGVSIARLLASFAIFARMNTAAVLLIQCSHQLANNAPAHGEIMGLLDDLESGRL
                     VLSKGPQPSLGRMKTLEFDSVTVGKGPDKRLDQVSVVLRRGETIGIAGPSGAGKTTFL
                     DTVAGLVVPDDGVVRINQLPMDRPVANLWRDRISYVTQECFLFNESIRRNLVWGRKEI
                     SDDLLWEALSIVRMDGVIGRTGEGLDVEVSERGIRFSGGERQRIALARAILRDPQILI
                     LDEATNAIDIETEAAIFARLTSVRPELTIIVVAHRPSTLAMCDRIIRLEDGRLVEDLR
                     IEAPEAVAR"
BASE COUNT          822 a         1307 c         1234 g          733 t
ORIGIN      
        1 gggggacgcg aaatctctac tccgctgggg aggaggaagc ggctctcaaa gagaagccgc
       61 tctcgccgtt caagtcaccg agcgggtttc tcatggtgtt tcgctccgat cttcgccgct
      121 tcgatgatct gtgggacctg accatcgacc agaacgaagg caacgtcatc ttcgcacacg
      181 atcaatggta tttcttcctg gcccgagcgc ttggcgaggt ccggttcgtc gatgaaccgc
      241 ttgccatcta ccgtcagcac ggcgggaata cgtacggggt gcccgtcagc tacagcattg
      301 gtcagcggtt ggcgaggcgc cttattcact acgggacggc cgacgaatgg gcggcgctaa
      361 gcgcgaagtc acgcgcaaca atcctccgac tgattgccga acgcgacggg ctcgcccgcc
      421 tcggacagct cgctcaatcg tacgacgacc tcgctgaaag gcgggcacgg cgcgcaaaga
      481 catattgtcg ggacagtgtt gcaaagaggg ccgccgcact tctccgctcg atttctgcgg
      541 ccgattatcg cggcggagca tgggccttcg aacccgcgtc catcgcccga gacgcgtgga
      601 gcggcgtggt ccaagggaag tgcaaagatc cgaccagggg atgctagcaa ggctcctgcc
      661 agtcgattga cattcccgca caacggtcct gaaactctgc tccggtcgcc ggggggcaga
      721 gagtagatgt caggctcagt cgaaagcgag cgcgtgagcg atctggccgc ggcgaggctt
      781 atcgcccagc taaccagccg cgaattcagc tcgggggtga aggagcatcc cgaaatcgac
      841 gcagagctcg cgaccaaaat tgtacggatc gctcgcgtca acaagttgct caagcccgtc
      901 ctcaagcagt ttcaggcgat cggcgttccg ctccccgagg aggtgaagcc ggacgttgcg
      961 gtgtatcttc gcaggtccgg gaagaagaat gccaaggcat tggctacgct tcgcgaagtg
     1021 accaggaagt tctccgaagc cgggatcctc cacgctgcct tcaagggccc cgtgcggcaa
     1081 atcctgttgg ggcaggacgt gttcgaacgg cccgccgccg acgtcgacat tctcgtcaaa
     1141 tacgatgatt ttgcgcgagc cacggccttg ctcaaggaga tgggatactg gattccgctg
     1201 ttctgcgatt ccccttggtg gcggcactat cttggagaac atgcccttct tccggacgat
     1261 ccgaaccggc taggcgtcga ccttcatcat cggacgcagc aaccgagctg cccccgccca
     1321 cgccatgagg aagccatgct gaacgacctc gcatggacgg agatcggcgg tgaaagaatt
     1381 cccgggttcg gccccacgtc gatctttctc aataccgtca tgagcatcgt caagggtctg
     1441 accaatcatg aacctgtggg ccaacacgtc cttgaccttg cccggcaact ccatgcggcg
     1501 gacggcgagc ggctcgccgc cttcgaccaa gccgcgcgct atcaagcttt ggaaagatcc
     1561 tacgctttcg cgcgacgcgc ggtcatcgcg ctgacgggag tcagccgcgt gccgaccgag
     1621 cagtgggtcg tcccggacga cacgctggtc gcaatgctga tcaccccatg ggaccccagc
     1681 atccagtggc ccaggcaccg ccaattgctg tgggacctcg tggacgggga cagctggttc
     1741 agccgcgcca tgaggttcac gagggagatc gcctggtgga cggccgcgga gctcacccgg
     1801 cggacgcatg atgtcagccg tcttcccgcg cgaatggacg agatggacga gaagactgcg
     1861 ccggcgcccg cggcgctcta gacgaagtag gcgatctcct tgagatcgtc atcgagcgga
     1921 aacccggtaa tctcaacgtt tgcagtctgg agccaggcat gcgctcgcag cgcgtctcct
     1981 gaatcgggca gtccgcgggc gaccccgaaa tgcatcacgg agcggattcc tcgcctctgc
     2041 agcatcatct tcgcggcgat cgcctgctgg atgcaaaccg cgtgcagcgg aatgttcttc
     2101 gcggcacgtt tgaccgcttc cgacactctc gtcgcgatct cgtcctgctc ttgagatgcg
     2161 ggttcgatga tgttcttcgg agccgcagcg gaataacttc ttccaagcgt ctccgctatc
     2221 ttgcgaaagg gaacgatcag cagccacgcc cgcgcaatcg cgagaaagac cgccgcttca
     2281 aaagtgagca cgcggtcctt gagaggcaag cgggagaagc gctgcagctt tctatatttc
     2341 ctacgcacac gcacacgaac cggaacagtc atcgggcaac ggcctccgga gcttcgatcc
     2401 tcaggtcttc caccagtcgg ccatcctcaa gccgaatgat gcggtcgcac attgcaagcg
     2461 tgctcgggcg atgagccacc acgataatcg tcagttcagg cctgaccgag gtgagccgcg
     2521 caaatatggc ggcttcggtt tcgatatcga tcgcattggt ggcctcatcc aggatcagga
     2581 tctgagggtc acgcaggatt gcgcgtgcga gcgcgatccg ctgacgctct cccccggaga
     2641 aacgaattcc gcgctcgctc acttcaacgt cgagaccttc gccggtcctt ccgatcaccc
     2701 cgtccattcg gacgatggac aaggcctccc ataggagatc gtcggaaatt tcttttcgtc
     2761 cccacacgag gttgcgacga atgctctcgt taaacagaaa gcattcctgc gtgacgtaag
     2821 atatccggtc gcgccacagg ttggccactg gacgatccat cggcaattga ttgatgcgca
     2881 ccacgccgtc gtccgggaca accaggccgg cgaccgtgtc gaggaacgtc gtcttgccag
     2941 cgccggaggg cccggcaatc ccgatcgtct ctccgcgccg caggacgaca cttacctggt
     3001 cgaggcgctt gtccggtcct ttcccgaccg tgacgctgtc gaactcgagt gtcttcatcc
     3061 gtccgagcga cggctgcggt cccttcgaga ggaccagccg gcccgactcc agatcgtcga
     3121 gcagccccat gatttcgcca tgcgccggag cgttgttggc gagctggtgc gaacactgga
     3181 tcagcaacac cgcggcagtg ttcatgcgcg cgaagatcgc gaacgacgcg agcagccgcg
     3241 cgatcgatac tccgagcgcg tagccgaccc agaggagaat cgcgccggcg attgccgcgc
     3301 ccacggtcaa cgccgcgcgc atcgagctct ggccgcgctg ataagcaaag cgacgatcct
     3361 tcagctcgcg cgcgactcgc gcatattcct tgacgaacgc cggctgcatg ttctgcgcga
     3421 acgataattt gaggccgccg agcagctgac ttgtggtgtg caccagagtg aggccgccgc
     3481 tgctcatttc ccggccaagg gccgaagagc ccttaagcgc gcgcaccagc ggaaatgccc
     3541 cgatcgcagc aatcaccagg aaaatcaccg cgactgccgg ggcgagcagc aggaccatga
     3601 accactgagc gagcagcatg gtgaattgga cggctccctg aagcatcagt tgtgtgccgc
     3661 tcatcacccg gcccatgctc ccgccaagcg cctgctgaat gcgcgcgtgc ttcagattct
     3721 cgatgtcctg ccaacgtgcc gcgccgagcg cctccatcag ccgcacctgc agccgctcgc
     3781 caaattcgag ctgaagcaac ccgttcgtcc gatcgcgagc catcatcacc acacttcgaa
     3841 ttgccatcac gatgacaaac agcatcagga ccagcgcgag cttcgtggac atggtcgcgt
     3901 ccggcggaag caggaagttg aacaacttcg ttgccgcgct gtctcggccg gggttggtga
     3961 agatggcgaa caatggcgcg agcagcgcca gcgaggcgct ctcgagaagc ccggcgagaa
     4021 tcatgagcag aatagccgcc gcggcccggc ggccgccgaa ctctataaag tcccgggcta
     4081 acccaaggac ctcccg
//
LOCUS       DASRBJ010000211         2527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_171318,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000211 DASRBJ010000000
VERSION     DASRBJ010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171318"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(79..1422)
                     /locus_tag="VE968_05835"
     CDS             complement(79..1422)
                     /locus_tag="VE968_05835"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding protein"
                     /protein_id="HZU51382.1"
                     /translation="MPATRRIGLITKSNRRTAVAIVGGGASGTILAAQLAKRGIKSVI
                     IDGSGRAGRGVAYSTRDEVHLLNVRAEAMSAWAGEPDHFAKRVAAQGREPRSFAERQL
                     FGEYLGEILDEAIEKDATQVMHAMAVRAVKEGRNWRVGADDSSVVEANALVLATGNHE
                     PDTIAAFDGMGSRFIGNPWGDAARAAVDDLASRDAAALLVGTGLTMVDLALSLDAAGH
                     RGPAVALSRRGLVPRSHADFTAAPVERGEVPRGLRAILRWLRRRGAEVGWRAAVDSLR
                     PHTHSIWQGLTGDEQRQFLRHARPWWDVHRHRIAPEVAAMVSRMIAEGRLQIVAGRIV
                     SASATPAGIEVSYRRRGMKPLQSKTFAYVFNCTGPLHSIARSKDRLLRSLLDAHEVKP
                     DELGIGLHVDEACRAGDHLWAMGALTKGRFWETIAVPDIREQAAAVAADIERELA"
     gene            complement(1382..1663)
                     /locus_tag="VE968_05840"
     CDS             complement(1382..1663)
                     /locus_tag="VE968_05840"
                     /inference="COORDINATES: protein motif:HMM:NF040386.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6356 family protein"
                     /protein_id="HZU51383.1"
                     /translation="MATQHKAKDDPGLMDRLFMQHPRSLGMSWAAHGAGAVAIGLRLV
                     GAGFACLVHAVVPGIFTQTAGRTVTHMYDHMARRKAGASNPENWPDYEI"
     gene            complement(1684..1760)
                     /locus_tag="VE968_05845"
     tRNA            complement(1684..1760)
                     /locus_tag="VE968_05845"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1724..1726),aa:Arg,seq:cct)
     gene            complement(1795..2196)
                     /locus_tag="VE968_05850"
     CDS             complement(1795..2196)
                     /locus_tag="VE968_05850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010164358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1178 family protein"
                     /protein_id="HZU51384.1"
                     /translation="MIVFDLQCRDGGETFEGWFRSGAEFEEQRAAGLVQCPICQSANI
                     EKAPMAPRLTRTGSDSALERLAAAQAEILKGSRWVGDKFADTARAMHAGEIEREQVHG
                     SATLEQAKSLVDEGVPVAPLPLPVRPPSQIN"
     gene            complement(2193..>2527)
                     /locus_tag="VE968_05855"
     CDS             complement(2193..>2527)
                     /locus_tag="VE968_05855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HZU51385.1"
                     /translation="RLAENDADVIAVPAAFTVPTGQAHWHVLLRARAIEAGLFIVAAA
                     QVGRHEDGRQTFGHSLVVDPWGEIILDMRDEPGIGFAEIDLKRISDVRSRIPALNHRR
                     AIPDAVTL"
BASE COUNT          491 a          824 c          729 g          483 t
ORIGIN      
        1 cctcatcggg gactgcatag gagggcggtg cctcgacgag atcgccgttg accgggtcat
       61 gttcatccga agaggtcatc acgctagttc ccgctcaata tcggcagcga ccgctgccgc
      121 ttgctcgcga atgtccggca cggcgattgt ctcccaaaaa cgacccttcg taagcgcgcc
      181 cattgcccat agatggtccc ctgcgcggca cgcttcgtca acatgaaggc caatccccag
      241 ctcatccggt tttacctcat gagcatcgag caggcttcgc aacaaccggt ccttcgagcg
      301 ggcgatcgaa tggagcggac cagtgcagtt gaacacgtag gcgaatgttt tggactgcag
      361 aggtttcatg ccgcgtcggc gatagctaac ttcgataccc gcgggagttg ccgaagcact
      421 cacgatccgg cccgcaacaa tctgaagccg tccctcggcg atcattcggc tgaccatggc
      481 ggctacttca ggcgcgatac gatgtcgatg aacatcccac caagggcgcg cgtgacgcag
      541 gaattgccgc tgctcgtcac cggtaagacc ctgccagatt gaatgcgtgt gtggacgcaa
      601 gctgtcgact gccgcgcgcc agccgacctc agcaccgcgg cgtctcagcc atcttaggat
      661 cgcgcgcagc ccgcgcggga cttcccctcg ttcaacgggc gccgcggtaa agtctgcgtg
      721 cgagcgcggg acgagcccgc gtcgcgaaag cgcaacggcc ggtcctctgt gccctgccgc
      781 gtcgagcgag agtgcgaggt ccaccatcgt cagtccggtg ccaacaagga gtgcagctgc
      841 atcccgcgac gcaagatcat cgacggcggc tcgagcggcg tcaccccacg gattgccaat
      901 gaacctcgaa cccatgccat cgaatgcggc gatcgtgtcg ggctcatgat tgccagtggc
      961 caatacgaga gcattggcct cgaccactga actatcgtcc gcgccgacgc gccagttccg
     1021 cccctccttc acagcgcgaa cggccattgc gtgcatcact tgcgttgcgt ccttttcaat
     1081 cgcctcatca aggatttcgc cgagatattc gccgaataac tgcctctcgg cgaaacttct
     1141 cggctcgcgc ccttgcgcgg cgacacgctt tgcaaaatgg tcaggctcgc ccgcccaggc
     1201 gctcatcgct tcggcgcgca cattgagaag atggacctcg tcacgagtcg agtatgcaac
     1261 accccggcct gctcgtccgc tgccgtcgat gatcaccgat ttaatgccgc gttttgcgag
     1321 ttgcgccgca aggatagtcc ccgatgcgcc gccgccgaca atcgcaaccg ccgtacggcg
     1381 gttagatttc gtaatcaggc caattctccg ggttgctggc acctgccttc cggcgcgcca
     1441 tatggtcgta catgtgcgtg acggttcgcc ccgccgtctg cgtaaagatt ccaggcacga
     1501 ctgcgtgaac aagacaagca aagccggcgc cgacaagccg caggccgatc gcgactgccc
     1561 cggcaccgtg ggccgcccac gacattccaa gcgatcttgg gtgctgcatg aacaaacggt
     1621 ccatcagtcc gggatcatct ttcgccttgt gctgcgtcgc catttgttac gccctcgcaa
     1681 gtatggcgac cccgacagga ttcgaacctg tggccctcag attaggaatc tgatgctcta
     1741 tcctgctgag ctacggggtc gtccagccac gaataggggc acccgcgaca gcaatcaatt
     1801 gatctggctc ggcggcctta ccggaagtgg cagcggcgct acgggaactc cctcgtcgac
     1861 gagtgacttg gcttgctcga gagttgcact gccgtgaacc tgctcgcgct cgatttcgcc
     1921 cgcgtgcatg gcgcgtgccg tgtcggcgaa tttatcgccc acccagcgcg accctttaag
     1981 aatctcggcc tgcgccgctg ccagccgctc gagagcacta tcggatcctg ttcgagtcaa
     2041 gcgcggtgcc attggtgctt tttcgatatt cgccgactgg cagatggggc attgcacgag
     2101 cccggccgct cgctgctcct caaactcggc gcccgagcga aaccagcctt caaatgtctc
     2161 accgccatcc cggcactgga gatcgaacac aatcataatg ttaccgcgtc cggaatagca
     2221 cgcctgtggt taagcgcggg tatgcgcgaa cggacgtctg aaatccgttt gagatcgatt
     2281 tccgcaaagc caatccccgg ctcatcacgc atgtcgagga tgatctcgcc ccacggatcg
     2341 acgacaagac tgtgcccgaa ggtttggcga ccatcctcgt gacggccaac ttgcgctgcc
     2401 gcgacgatga aaagaccagc ctcgattgcg cgggcgcgaa ggagaacgtg ccaatgcgct
     2461 tgaccagtcg ggacggtaaa tgcggccggt acggcaatga catcagcatc gttttcggcg
     2521 aggcgcg
//
LOCUS       DASRBJ010000212         5341 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_124069,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000212 DASRBJ010000000
VERSION     DASRBJ010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5341
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124069"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..942
                     /locus_tag="VE968_05860"
     CDS             <1..942
                     /locus_tag="VE968_05860"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HZU51386.1"
                     /translation="HLTDAGKAMKLEGLDAVIVATPTASHEPIVREAIERGLHVFCEK
                     PMTLSAEVSRELTQLAEERGLVTQVGYHNRFVACFGELKRLVEAGAVGRISHVLGEAY
                     GPVVTRPAKASWRGKAELGGGALMDYAAHPLNLLNWYLGECTACDSATLGRIFSKGVE
                     DEVYASLRFGDVSAQLSVNWSDASHRKMTTQISIWGDKGKLYADRQELRAYFRDPRNL
                     PEGYGEGWNVRYTTDLTQPVEFYIRGEEYSAQLETFRDRITGKSDQAANSFAEAAATD
                     SAIHMIRTAASGAPTRYETVAANTNRGNFLSRMLGRA"
     gene            939..1769
                     /locus_tag="VE968_05865"
     CDS             939..1769
                     /locus_tag="VE968_05865"
                     /inference="COORDINATES: protein motif:HMM:TIGR00696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WecB/TagA/CpsF family glycosyltransferase"
                     /protein_id="HZU51387.1"
                     /translation="MSSIRSVARAGFPPWKKCRILNAWVDDLTVEQVVDRLDEGILWT
                     LNPDHLFHLQRNAAFLDAYRQAAIVSSDSKYVYWGLKFLGRRIQSKASGSDIVPAYWR
                     RHASNPDVRIFLLGARPGIAEQARRRINAAAGREIVVGAHGPSMNFVNDEAESADAIE
                     MINQSGATCLIVGLGAPKQEVWIVKHRHMMPNVKVYMGVGATIDYEADAVKRAPRWMT
                     QNGLEWIYRMATEPRRYWRRYARQMEFLWLILLDRLGLYRPPPQLGETIVATKEIKAA
                     "
     gene            1774..2643
                     /locus_tag="VE968_05870"
     CDS             1774..2643
                     /locus_tag="VE968_05870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51388.1"
                     /translation="MDKILFGDNQFFGVNHMSEEKARQQAMRFQDLDEIMRVLEAARD
                     LGAGGFMCTTHDRIADVCERIRAEPRKWQGFNLYPGMPYAHKYANAVTELGYFDALRK
                     FLPKDGFVDTLLRGSKAIATQDMKAIIGLLVDAEMKMFDGLPTPVIFLQNVVTDLVIG
                     LGSVDAFAAFSEHVRKKYAAEPGFITMNVPKLLPLLDAAGIESPIVCANVNKIGFRMS
                     GGIEGYRRAAERYSPRVIAMSIFASGALAPREAIEWVLDEPYVQSIVFGASSRRNIET
                     TINLIREKLGEFA"
     gene            complement(2650..4140)
                     /locus_tag="VE968_05875"
     CDS             complement(2650..4140)
                     /locus_tag="VE968_05875"
                     /inference="COORDINATES: protein motif:HMM:TIGR03025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exopolysaccharide biosynthesis polyprenyl
                     glycosylphosphotransferase"
                     /protein_id="HZU51389.1"
                     /translation="MNATGESLAVPREQTVQESQALGRIRARRHRFTSNIAGPIFFVA
                     DLLCILFSVPFVLVGYRMVFGDRSILPVHIFALCGAAGTYLLIRTSRHAYHRTLVNLF
                     DAEADTLIDAVASVLIASALVWQFGMIANLSRGMAILYLMVFCTMLLISRPVVRAVIR
                     QLAARGAIEQRIAFYGADPDSLAIIRKVLEGTNLPHLRFVGVADDRPKVKRVEGLKLI
                     GGLDELLALARSGELDQVLFCVPNLPRERLHDIMEQLSNVSVDVAVIPAEAIQLAPDY
                     RVQLLGQLPVLTVWQRPFRDMNALVKRAEDLLIAGTAVVLLSPVLLLTALAVRLSSPG
                     PIFFIQPRIGFNNELIRVLKFRTMYADQTDLLAERTTTADDPRITPVGRTLRKLSLDE
                     LPQLFNVIRGDMSLVGPRPHATHMKVGDRYYQDAVRGYAGRHRVRPGITGLAQVKGVR
                     GEIRTIERAKLRVELDTQYIENWSLLLDLWILLLTVRAVIWDRDAY"
     gene            complement(4140..>5341)
                     /locus_tag="VE968_05880"
     CDS             complement(4140..>5341)
                     /locus_tag="VE968_05880"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZU51390.1"
                     /translation="LGAYQQAYNAFAHAHELDRTNVPVLAAMVQLALMSDNFDLADDQ
                     AKSLALLAPDNPVVTLVGGYDAYRSGDNDKAEAAADSILANSPDDSFAKVLKAKVLVG
                     RGRFDEAASLLEAQHQITPDDQGALRGLTAIYQFRDDWRNLARIQTDAHRLKPRDFTV
                     AVAAIDAWLRAGNVAAASQLSRPYLVRSSNPRAVESVLESWATHAPPGAILPDAVKLA
                     SALSGDARVSFGNYFNRVRRPDLTAALLGGSRLPVTQANARLNAVVAQSIALRGNSAA
                     AKRLFDLVLEREPDQAEALRGRCALEASNGMTKQAIIDAERLVTISPDSAEDRLLLAH
                     ANRVSGNNAEALRTLWQAFQDLPGDEQVFSSLRSALASTGDLDGQRRVDDEFADRRKA
                     KLTKDLV"
BASE COUNT         1082 a         1579 c         1675 g         1005 t
ORIGIN      
        1 cacctgaccg acgcgggcaa ggcgatgaag ctcgaggggt tggatgcggt gatcgtcgca
       61 acgccgacgg cttcgcatga accaattgtg cgcgaggcga tcgaaagagg gcttcacgta
      121 ttttgtgaaa agccgatgac cctgagtgcc gaagtaagcc gagagcttac ccagctggcg
      181 gaggagcggg gactggttac gcaggtcggc tatcataatc ggttcgtggc atgtttcggt
      241 gagctcaagc ggctcgtgga ggcgggtgcg gtcggccgga tcagtcacgt gctcggtgag
      301 gcctacggcc cggtcgttac acgacccgcg aaagcgagct ggcgcggcaa ggcggagctc
      361 gggggcgggg cgctgatgga ttacgctgcg catccgttga atctgctcaa ctggtacctc
      421 ggcgaatgca cggcgtgcga cagcgctacc ctcggacgga tcttttcaaa gggcgtcgag
      481 gacgaggtct atgcctcgct tcgcttcgga gatgtttccg cccagctctc ggtcaactgg
      541 tcggatgcct cgcatcgcaa gatgacgacg caaatcagca tttggggcga caaggggaag
      601 ctctacgcgg atcgccagga gctccgtgct tacttccggg atccccgcaa cctccctgaa
      661 ggctacggtg aggggtggaa cgtgcgctat acgacggacc tgacgcagcc cgtcgagttc
      721 tacatccgcg gcgaagaata ttccgcccag ctcgagacgt tccgggaccg gatcaccggc
      781 aagtccgacc aggccgccaa cagctttgcc gaagcggcgg ccaccgattc cgcgatccat
      841 atgatccgca ccgcagcatc cggcgcgcca actcgatacg agacggtcgc tgcgaatacg
      901 aaccgtggca attttctctc acgaatgttg gggcgggcgt gagcagcatc cggtcagtcg
      961 ctcgcgcggg ctttccgccg tggaaaaagt gccgaattct caacgcgtgg gtagatgacc
     1021 ttaccgtgga gcaagtcgtg gaccggctgg acgagggcat cctttggaca ctgaaccccg
     1081 accacctttt ccatcttcag cgtaacgcgg ccttcctcga cgcctatcgc caagcggcaa
     1141 ttgtctcgtc agacagcaag tatgtttatt ggggcctcaa attcctcgga cgaagaatac
     1201 aatcgaaagc ttcgggctct gacatcgttc cggcctattg gaggcggcac gccagcaatc
     1261 ccgatgttcg cattttcttg ctgggcgcgc gccctggcat agccgagcag gcgcgtcgcc
     1321 ggatcaacgc tgctgccggc cgggaaatcg tcgtgggggc gcatggtccc tcaatgaact
     1381 tcgtcaacga cgaagccgaa agcgcggacg ctattgagat gatcaatcaa tcaggcgcca
     1441 catgtctgat cgtcggtctc ggcgcgccca agcaggaagt ttggatcgtg aagcaccggc
     1501 acatgatgcc gaacgtcaag gtctacatgg gcgtcggagc gaccatcgat tatgaagcgg
     1561 atgcggtaaa gcgcgctccg cggtggatga ctcaaaacgg gctcgaatgg atctatcgca
     1621 tggcgaccga gccgcggcgt tactggcgcc gctatgcgag acagatggag ttcctatggt
     1681 tgatcttgct ggaccgtttg ggcctctatc ggcctcctcc gcagctgggt gaaaccatcg
     1741 tcgcaaccaa ggaaatcaag gcagcctgac ctcgtggaca agatcctgtt cggcgataat
     1801 cagttcttcg gcgtaaacca catgtccgag gagaaggcgc ggcagcaggc catgcgcttc
     1861 caggacctgg acgagatcat gcgcgtgctc gaggcggcac gtgaccttgg ggccggcggc
     1921 ttcatgtgca cgacgcacga tcggatcgcg gatgtgtgcg agcgcattcg tgccgagccc
     1981 cgcaagtggc agggtttcaa cctgtaccct ggcatgccct acgcgcacaa atatgcgaac
     2041 gcggtgactg agctcggcta tttcgacgcg cttcggaagt tcctcccgaa ggacggattc
     2101 gtcgacacgc tgctgcgcgg gtcgaaggcc atcgccaccc aggacatgaa ggcgatcatc
     2161 ggcctcttgg tggacgccga gatgaagatg ttcgacggcc tgcccacgcc cgtcatcttc
     2221 ctgcagaacg ttgttacgga cctcgtgata ggtttgggct cagtcgatgc tttcgccgct
     2281 ttctccgaac atgtccggaa gaaatatgcg gcggaaccgg gcttcatcac gatgaatgtg
     2341 cccaagctgc tgccgctgct ggacgcggcc gggatcgaga gtccgatcgt ctgcgcgaat
     2401 gtaaacaaga tcggattccg catgagcggg ggcatcgaag gctatcgccg cgcggccgag
     2461 cgctattctc cgcgcgtaat tgcgatgtcg atcttcgcct ccggtgccct ggcgccccgt
     2521 gaagccatcg agtgggttct ggatgaaccc tacgtccagt caatcgtctt cggagcttcg
     2581 tcgcgccgga acatcgaaac gacgatcaat ctgatcaggg aaaagctcgg cgagttcgcc
     2641 tgacggcttt cagtaagcgt cgcgatccca aatcacggcg cgtaccgtca gtagcaggat
     2701 ccagaggtcg agcagcagcg accagttttc aatatattgc gtgtccagct cgacgcgaag
     2761 cttcgcgcgt tcgatggtcc ggatctcgcc acgcacgcct ttgacctgcg cgaggccggt
     2821 aatacccggc ctcacccggt gccgacccgc gtagccgcgt acggcgtcct gatagtaacg
     2881 gtccccgacc ttcatgtggg ttgcgtgggg tcgcggaccg acaagcgaca tgtcgcctcg
     2941 aatgacgttg aacaattgcg gaagctcgtc gagactgagc ttgcggagcg ttcgtccaac
     3001 aggcgtgatc cgcggatcgt cagcggtcgt cgttcgctcc gcgagcaggt cggtctgatc
     3061 cgcgtacatg gtacgaaact tgagcacgcg aatgagctca ttgttgaagc cgatccgcgg
     3121 ctggatgaag aagatcggcc cagggctcga cagcctcaca gcgagcgctg tcagcaacag
     3181 cacgggcgac agcaatacga cagcggtgcc cgcgatgagc aagtcctcgg ctcgctttac
     3241 caatgcattc atatcgcgga acggccgttg ccaaacggtc agcaccggaa gctgcccgag
     3301 caactggaca cggtagtcgg gcgcgagctg gattgcctcg gcagggatca ctgccacgtc
     3361 caccgaaacg ttgctcagct gttccatgat gtcgtggaga cgctcgcggg gcaggttcgg
     3421 gacgcaaaac aagacctgat cgagctctcc gctacgggcc agcgcaagca gctcgtcgag
     3481 gcctccaatc aatttcaggc cttcgactcg cttcaccttc ggccggtcat ccgcaactcc
     3541 gacgaaccgc aagtgaggca ggttcgtccc ttctaggact ttgcggatga ttgcgagaga
     3601 gtccggatct gcgccataga aggcgatcct ctgctctatt gcgccacgcg cggcgagctg
     3661 acggatcacg gcacgcacca ccggccgaga gatcagcaac atggtgcaga agaccatcag
     3721 gtagaggatc gccatgcctc gggaaaggtt cgcaatcatg ccgaactgcc aaacgagggc
     3781 ggaggcgatc agcacgctcg ctacagcatc gattaaagtg tcggcttccg cgtcgaacag
     3841 gttcaccagc gttcgatgat aagcgtgcct cgatgtccgg atcagcaggt aagttccggc
     3901 ggcaccgcac agcgcaaaga tgtgcaccgg caggatggag cgatccccga agaccatccg
     3961 gtagcccacg agcacgaagg ggacgctgaa caggatgcac agcaggtccg cgacgaagaa
     4021 gatcggtccc gcgatgttcg aagtgaacct gtgccgacgc gcccggatac gtccaagagc
     4081 ttgggactct tggaccgttt gctcgcgtgg gacggcaagg gactcgccag tcgcgttcat
     4141 caaaccagat ctttcgtcag ctttgccttg cgccggtcgg cgaattcgtc atccacgcgc
     4201 cgctgcccgt ccaaatcgcc ggtcgaagcg agggcgcttc ggagggagga gaaaacctgc
     4261 tcgtccccgg gcaagtcctg aaaagcctgc cacagcgttc gcaatgcttc ggcgttgttg
     4321 ccgctcacac ggttcgcatg agcgagaagc aggcgatctt ctgccgaatc cgggctgatg
     4381 gtcaccagtc gctctgcatc gatgatcgcc tgcttggtca ttccgttgct tgcttctaat
     4441 gcgcagcgcc cgcgaagggc ttcggcctga tcgggctcgc gctccagaac caagtcgaaa
     4501 agacgcttcg ccgcggcgga atttccgcga agggcaatcg actgcgcgac aacggcgttc
     4561 aatcgagcat tcgcctgcgt aacagggagc cggctgccgc cgaggagtgc tgctgtaagg
     4621 tcaggcctcc gcacgcgatt gaagtaattg ccgaaggaga cgcgcgcgtc gccggatagt
     4681 gcgctggcca gcttgactgc gtcgggcagg atcgcgccag gaggtgcatg cgtggcccac
     4741 gactccaaca cggattcaac ggcgcgggga ttcgacgagc gaacaaggta cggccttgaa
     4801 agctggctgg cggcggccac gttgccggct cgaagccacg catcgattgc cgcgacggcg
     4861 acggtgaaat cgcgaggctt cagtcggtgg gcatcggttt ggattcgcgc caggttccgc
     4921 caatcatccc gaaactggta gatcgccgtc aaaccgcgga gcgcgccctg atcgtccggc
     4981 gttatttgat gttgagcttc cagcagggat gcggcctcgt cgaaacgtcc ccttccgacc
     5041 aagaccttag ccttgagcac tttcgcaaaa gagtcgtcgg gtgagtttgc gagaatagaa
     5101 tccgcagcgg cctccgcctt gtcattgtcg ccggatcgat atgcgtcgta acctccgacg
     5161 agcgtcacga ccggattgtc aggagcgagg agggcaagcg actttgcctg atcgtcagcc
     5221 agatcgaagt tgtcgctcat gagagcgagc tgaaccatgg ccgccagcac cgggacgttg
     5281 gttcggtcga gctcatgggc gtgggcaaat gcgttatacg cttgctgata agcgcccaat
     5341 t
//
LOCUS       DASRBJ010000213         4832 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_427216,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000213 DASRBJ010000000
VERSION     DASRBJ010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4832
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427216"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..552)
                     /locus_tag="VE968_05885"
     CDS             complement(<1..552)
                     /locus_tag="VE968_05885"
                     /inference="COORDINATES: protein motif:HMM:NF021141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2459 domain-containing protein"
                     /protein_id="HZU51391.1"
                     /translation="MSRRVQKRKLAKWVGRAVTLLLLAPASYLIAALLGSVIPVNTIW
                     TEPVKGTTIYIADNGLHADLIMPIKAQGLDWSKRLREPTLVPSDEAWVAFGSGERQVY
                     LDTPSWWDLRPRTIARSLVGGERLIHVERVANPYYAARAIRLRPEEYRRLWAAIASDF
                     ALDAAGHPERINHRGYSSDDAFYE"
     gene            612..688
                     /locus_tag="VE968_05890"
     tRNA            612..688
                     /locus_tag="VE968_05890"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:646..648,aa:Pro,seq:ggg)
     gene            781..1107
                     /gene="yajC"
                     /locus_tag="VE968_05895"
     CDS             781..1107
                     /gene="yajC"
                     /locus_tag="VE968_05895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HZU51392.1"
                     /translation="MSMVQAAPAGSSGGISQLLLGIAPWLLIFAIFYILMIRPQQRSA
                     KEHQARIAAVKKGDEIITGGGIRGRVTKVSDDEAEVEIAQGVRIHVVKSTISNVLTKN
                     AKPAND"
     gene            1107..2699
                     /gene="secD"
                     /locus_tag="VE968_05900"
     CDS             1107..2699
                     /gene="secD"
                     /locus_tag="VE968_05900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017181749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HZU51393.1"
                     /translation="MLEFPKWKVWLVSLVVAIGVLLSIPSLIAATPLRDSWPRWLPQY
                     RINLGLDLAGGSHLLLEADAADAQKQRLQAMEDSVATELRRDPRIDVGDISTAGGRLS
                     FMVRDPRQVDAAVERMRNLTRPVALTGSRDWDVSVVDSTRVVLTPSPSGTAQAMKDAM
                     GVARDVVRKRIDPSGTKEITVITEGGNRILVEVPGVEDPEALKRLIGQTARLEFKLVD
                     TGADPQEVQQGHAPPGSQVLPMFDGHGAIAVKRRVMVSGDQISKANQSFDENGAPDIE
                     ITFDSAGARRFGRATQENVGKPFAIILDDKVLSAPTIESAILGGQARISGNFTVQSAH
                     DLAVSLAAGKLPVKLIPIEERTVSAELGTDSIHKGALASIVAVLGVIIFMLVTYGRFG
                     VYATIALVVNAFLILGIMAMFNATLTLPGIAGFILTIGAAVDANVLINERIREEIRRG
                     RRLIDAVETGYHEAFRAIFDANVTHVISASIMAYFGSGPVRGFAVVLLIGVVTSVFTA
                     VYFTRMLVALWIRSARPRALHI"
     gene            2711..3664
                     /gene="secF"
                     /locus_tag="VE968_05905"
     CDS             2711..3664
                     /gene="secF"
                     /locus_tag="VE968_05905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008599406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HZU51394.1"
                     /translation="MKLLKLVPDHTNIDFMHWRNFALVLSLVVTIASVTFTIYRGLNL
                     GIDFVGGEVVRAEFTQPVHIDDLRNRVARLGVGEAGITTLGKDNRSYQIRLPKPPGPE
                     SASNAMVSKLRTMIPQQYPGARVDAGESVSGKVSEELAKDSALAVALAMLGIAIYIWF
                     RFEWQFGVGALLTLAHDIAMTLGFFAFTRLPVDLNVVAAFLTIIGYSLNDTVVIYDRI
                     RENLRKYRKMAILPLLNLSLNETLARTVVTSLTVLIALGVLMLIGPSVIFGLAIAIFL
                     GVVIGTYSSIYISSPVLVWLGVQPDSFLKADEKDAPEAQPA"
     gene            3745..4551
                     /locus_tag="VE968_05910"
     CDS             3745..4551
                     /locus_tag="VE968_05910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HZU51395.1"
                     /translation="MFKLCRSAVLLIAAGAVLPLAACAHGGKNKVDTAYVARDVSSLY
                     SSAKKYQDAGDHEQAAKLFDEVERQHPYSIWARRAQLMSAFNYYLAKKYTDAINSAQR
                     FLTIHPGNEEAPYAQYLIAMSYYQQIDDVTRDQTTTQQASDAFGELVRRYPDTRYAQD
                     ARLKIDLIRDHLAGKEMEIGRFYQRSGQWLAATYRFRSVIDSYQTTTDAPEALERLVE
                     CYLALGMPQEAQKAAAVLGRNYPDTWWYRQSLKLLGNENKLAARRTASRK"
     gene            4574..>4832
                     /locus_tag="VE968_05915"
     CDS             4574..>4832
                     /locus_tag="VE968_05915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HZU51396.1"
                     /translation="MLRQLAIRNIVLVDRLEIEFEPGLGVLTGETGAGKSILLDALGL
                     ALGARADTSLVRASEDSASVSAELELPDGHPAIAMLEQQGIE"
BASE COUNT          944 a         1476 c         1408 g         1004 t
ORIGIN      
        1 ctcatagaag gcgtcgtcac tgctgtagcc tctatgattg atcctctccg ggtgacctgc
       61 tgcgtcgagg gcaaagtccg aagcgatggc agcccacaat cgccgatatt cctcgggtcg
      121 aagccgtatc gcgcgagccg cataatatgg gttcgcaaca cgctcgacgt gaatgagcct
      181 ttcgccgccg accagtgaac gcgcgatcgt tcgcggccga aggtcccacc agctgggtgt
      241 gtccaggtag acttgacgtt cacctgatcc gaacgccacc cacgcttcgt cggacggtac
      301 gagcgtcggc tcgcggaggc gctttgacca gtcaagtccc tgcgctttaa tcggcatgat
      361 gagatcagca tggaggccat tgtccgcgat atagatcgtc gtccccttca cgggttcggt
      421 ccagatggtg ttgaccggga tgaccgaacc gagcagcgcc gcaatgagat atgatgccgg
      481 agcaagcagg aggagcgtga cggcgcgccc aacccatttc gcaagcttgc gtttttgtac
      541 gcgacgcgac acctgcctct ccctccgacc ttgccttgtt cggtaccggt gcctagatgc
      601 cgctgccaag tcggggcgta gcgcagcctg gtagcgcatc acactggggg tgtggaggtc
      661 gctggttcga atccagtcgc cccgaccatc gatgcattct ggtagtccag gctgccatga
      721 cagtcggttt gatcttcaag gaaagttagc aagtcttcga tgtccagccc accacttctg
      781 atgagcatgg ttcaggcagc tcccgctggt tcgagcggcg gcatcagtca gctgctcctc
      841 ggcatcgcgc cgtggctgct gattttcgcg attttctaca tcctcatgat tcgtcctcag
      901 cagcgcagcg caaaggaaca ccaagcccga atagcggcgg tcaagaaggg cgatgaaatc
      961 atcaccggcg gcggaatccg tggccgggtt acgaaggtga gcgacgacga agcggaggtt
     1021 gaaatcgccc aaggtgtgcg catccacgtc gtcaaatcga cgatcagcaa tgtgctcacc
     1081 aagaatgcta agccagcgaa cgactgatgc tcgagtttcc aaaatggaaa gtttggctcg
     1141 tctcgctggt tgttgcgatc ggcgtacttc tgtccattcc gagcctgatt gcggcaactc
     1201 cgcttcgcga tagctggccg aggtggctcc cgcagtaccg gatcaatctc ggtctcgacc
     1261 ttgccggcgg aagccacctg ttgctcgaag ccgatgctgc ggacgctcag aaacagcggc
     1321 tgcaggcgat ggaagattcg gttgcgacgg aacttcgccg cgatcccagg atcgatgtcg
     1381 gtgatatttc aaccgccggt ggccggctgt cgttcatggt tcgtgatccg cggcaagttg
     1441 atgccgcagt cgagcgaatg cgcaacctca cgcgtcccgt ggcgctcacc ggcagtcgcg
     1501 actgggatgt atccgtcgtt gactcaacaa gggtcgtgct gacgccgagc ccaagcggca
     1561 ccgcccaggc gatgaaggat gcgatgggcg ttgcgcgcga cgtcgttcgc aaacggattg
     1621 atccgtccgg caccaaggaa atcacggtca taaccgaagg cgggaaccga attctcgtgg
     1681 aagttcctgg ggttgaggat ccggaggcgc tgaagcgcct cattggtcag actgcgcgac
     1741 tcgagttcaa gctcgtggat accggcgcgg atccgcagga ggtccagcaa ggccacgcgc
     1801 cgccgggcag ccaggtactg ccaatgttcg acggccacgg agcgatcgcg gtcaagcggc
     1861 gcgtgatggt ctcgggcgac cagatctcga aggcgaacca gagcttcgac gaaaatggcg
     1921 cgccggacat tgaaatcacc ttcgattcgg ccggcgcccg gcgatttggc cgcgcgacac
     1981 aggagaatgt cggcaagcca ttcgccatca ttctcgacga caaggtgctt tcggcgccaa
     2041 cgatagagag cgcgatccta ggcggccagg cgcgaatatc cggcaacttc accgttcaaa
     2101 gcgcccacga ccttgccgtc agcctcgctg ccggcaagct cccagtaaag ctcatcccga
     2161 ttgaggagcg caccgtcagc gccgagcttg gaaccgattc cattcacaaa ggtgcacttg
     2221 cctcgatcgt tgccgttctc ggcgtgatca tcttcatgct ggttacctat ggtcgtttcg
     2281 gcgtctatgc gaccatcgcc ctcgtcgtga acgccttcct catcctcggc atcatggcga
     2341 tgttcaatgc cacgctgaca cttccgggga ttgccggttt catcctgacg atcggcgccg
     2401 cggttgacgc caacgtcctc atcaacgaac ggatccgcga agagattagg cgcgggcggc
     2461 gccttatcga cgccgtcgaa accggctatc atgaagcatt ccgcgcaatc ttcgatgcga
     2521 acgtcactca cgtgatctcg gcgtcgatca tggcctattt cggctcgggc ccggttcgcg
     2581 ggttcgctgt tgtgctcctc atcggcgttg tcacgtcggt gttcaccgcc gtttatttta
     2641 cgcgcatgct ggtggcgctg tggatccgca gtgctcggcc tcgagcgcta cacatttaag
     2701 gcaattgccc atgaagcttc taaagcttgt ccccgatcac accaacatcg acttcatgca
     2761 ctggcgcaac tttgcactcg tgctttcgct tgtcgtcaca atcgcttccg tcacattcac
     2821 gatctaccgt ggcctcaatc tcggaatcga tttcgtcggc ggcgaggtcg tgcgcgccga
     2881 gttcactcag ccggtgcaca tcgacgacct gcgtaaccgc gtcgcacgat tgggggttgg
     2941 tgaagcaggt atcacaacac tcggcaaaga caatcggagc taccagatcc gacttccgaa
     3001 accgcctggt ccggagtccg cttcgaacgc gatggtgagc aagctacgca cgatgatccc
     3061 ccagcaatat ccaggcgcac gcgtcgatgc tggtgagtca gtctccggaa aggtaagcga
     3121 ggagctggcg aaggacagtg cgcttgccgt tgcgctcgcg atgcttggca tcgctatcta
     3181 catctggttc cggttcgagt ggcagttcgg tgtcggcgcg ctacttacgc tcgcccatga
     3241 catcgcgatg actctcgggt tcttcgcctt cacccgatta ccagttgacc tcaacgtcgt
     3301 cgctgccttc ctgacgatta tcggctattc gctcaacgac actgtcgtca tctacgaccg
     3361 catccgcgag aacttgagga agtatcgcaa gatggcgatc cttccgctgc taaacctttc
     3421 actgaacgag accctggcgc gaacggtcgt cacctcgctg acggtgctga tcgcgctcgg
     3481 cgtactgatg ctcatcggtc cgtcggtgat ctttggcctt gcaatcgcga ttttcctcgg
     3541 cgtcgtgatt ggaacctatt cttcgatcta tatctcgtct ccggtgctgg tctggctggg
     3601 tgttcaaccc gacagcttcc tcaaggctga tgagaaagac gctccggagg ctcagccagc
     3661 ctgacgtccc gttcatccct cgccaagctt tcgcagttca agcgcttctt ggcctcctcc
     3721 ggaggccacg ctaatgaggt ccccatgttc aagctttgcc gttctgccgt ccttctcatt
     3781 gccgcgggtg cggttctgcc gcttgccgcg tgcgcacacg ggggcaagaa caaggtcgac
     3841 acggcctacg tggcccggga tgtcagctcg ctctactcgt cagccaagaa ataccaggac
     3901 gcgggggatc acgaacaggc ggcaaagctg ttcgacgagg tcgagcgtca gcatccctac
     3961 tcgatttggg cccgccgcgc tcagcttatg agcgcgttca actattatct tgcgaagaaa
     4021 tatacggatg ccatcaattc ggcacaacga tttctcacga ttcaccctgg caatgaggaa
     4081 gcaccctacg cgcagtacct gatcgcgatg agctattatc agcaaatcga cgatgtcacg
     4141 cgcgatcaga ccaccacgca gcaggcgtcg gacgcatttg gcgagttagt ccgccggtat
     4201 ccggacacgc gctacgcgca ggacgctcga ctgaagatcg atctcatcag ggaccatctc
     4261 gctggcaagg aaatggagat cggccgtttc tatcagcgtt cgggccaatg gcttgccgcg
     4321 acctatcgtt tccgaagcgt tatcgacagc taccagacaa cgaccgatgc gcccgaagca
     4381 ctcgagcgcc tcgtcgaatg ctatcttgcg cttggcatgc cgcaggaggc ccagaaggcg
     4441 gccgccgtgc tcggccgtaa ttatcccgac acatggtggt accggcaatc gctgaagctt
     4501 ctcggcaacg agaacaagct agccgcacgc cggacggctt ctcggaagtg acacttcggc
     4561 gagtgctcct cacgtgctga ggcagctcgc cattcgaaac atcgtcttgg tggatcggct
     4621 cgagattgag ttcgagcctg gccttggcgt tctcactggc gagacaggcg caggcaaatc
     4681 gatccttctc gacgcgctcg gcctcgccct tggcgcgagg gccgacacga gcctcgtgcg
     4741 cgccagcgaa gatagcgcgt ccgtatcggc ggagcttgaa ctccccgatg gccacccagc
     4801 aattgcgatg ctcgagcagc aggggatcga ac
//
LOCUS       DASRBJ010000214         9410 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_229273,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000214 DASRBJ010000000
VERSION     DASRBJ010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 9410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9410
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229273"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1444
                     /locus_tag="VE968_05920"
     CDS             <1..1444
                     /locus_tag="VE968_05920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51397.1"
                     /translation="QAALSVEHGLDSRTSVGVLARTILLDDQELTFVEGTVRRSVGPA
                     QVEIGAARESNGGSAAHAALLGKFAGVYVNADLLLANDFHLQGTSTPISSREARLALD
                     APLRLGRTVIPAHAEVHYSSLLDGTKTLDAAARLSVSVDRFNLGTALNFHRDYVTSGP
                     SPPGETWISLLGSGHVGAVRLRSDTEFDVGPSARFKSVELSAYWTATDHADWETDLVY
                     DGLQKRTRAQITHILRFDTFALSLTGEAATDGAVAFGFNLNFSLDPKHGLNLSRRPLA
                     EGGMIHATVFRDLNDNGVLDPGEPLEKGALITTGTRQAERKTDANGAVTVGGLSPYVP
                     VPVGIDTTSLDDPMLTPKNALQVVVPRPGVSADVLIPLVGGGDIEGALMKSGELGFEG
                     VDIELVDKNGKVFASARTDFDGFFLFERVPYGTYSIRVNAKSASAAKIASELGVKVSV
                     TADHSVVRLGSIQAAKELRVANAATAKPVP"
     gene            complement(1501..1587)
                     /locus_tag="VE968_05925"
     tRNA            complement(1501..1587)
                     /locus_tag="VE968_05925"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1551..1553),aa:Leu,seq:gag)
     gene            1762..1974
                     /locus_tag="VE968_05930"
     CDS             1762..1974
                     /locus_tag="VE968_05930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51398.1"
                     /translation="MILLLPAAVAIAAPPSKAAATVESTATIRVLRAVTLKLDGSANP
                     ELPPPRSTVIKRENGSFDRAKVFDFQ"
     gene            complement(1976..2953)
                     /locus_tag="VE968_05935"
     CDS             complement(1976..2953)
                     /locus_tag="VE968_05935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MJ0042-type zinc finger domain-containing
                     protein"
                     /protein_id="HZU51399.1"
                     /translation="MSIIPVYRQLTVSEEGFAHMILTCPNCGTQYVVKDGAIPPEGRQ
                     VRCAACKHSWHQNPEVADEVLPTGSVEPVEATDPSEAEDRNEAAGGAGEQTAHDESLA
                     SATLIEPRSGPEAEQRAYEEAVIDAGAGSSAREQSTAADERLDDAGEQSTETARVHED
                     WREPPTAEDEADIFSPFAEDEEQPSRSGTGTALLIAILVIIAAAAAFWVFAPPALKAK
                     LGLASAGATPLQLVTTHMDRQHLESGNDLLTLTGRVINPSAKEQVVPPIQAQLKNRGG
                     KVVYSWTIQPPAQTLPAGGSVSFNSAEVSVPPGGDELTITLGDGKAAGL"
     gene            3008..3721
                     /gene="ftsE"
                     /locus_tag="VE968_05940"
     CDS             3008..3721
                     /gene="ftsE"
                     /locus_tag="VE968_05940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004208937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HZU51400.1"
                     /translation="MAAVAEFDSVGLRYGTGAEVLRDLDFRLRTGAFYFLTGPSGAGK
                     TSLLKLLYLAQRPTRGRIRLFGEELSEAPREALPPFRRRIGVVFQDFRLVRHLSAFDN
                     VALPLRVAGVKEEEVEGPVREMLAWVGLADRASARPPTLSGGEQQRVAIARAVINRPE
                     LLVADEPTGNVDAEMANRLMGLFTALNRLGTTVVVATHDMGLITATPGAQLIRLENGT
                     LDDPTGALKNPPRPPRSAS"
     gene            3721..4590
                     /locus_tag="VE968_05945"
     CDS             3721..4590
                     /locus_tag="VE968_05945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein"
                     /protein_id="HZU51401.1"
                     /translation="MFQWFFVSPAERRLLGASSRRAPTPWVIAIMSFTIMLIAATGLA
                     LANTAHVLSRGIQSRYALESPGGGTNIQRLVATLRSTDGISAVSAVPEAEMRRTLEKW
                     LGPEAQSTELPVPALINFDAAPRANLNALEERARAIAPGSRVIAQKESVAPLLQSLNL
                     LQIVSLGLVFLLSAAAAAAVVLAARGALDSHRFTIEVMHGVGATDLQVTHLFQRKIAI
                     DACIGSVAGGAAAALVLLLLAGGAAFAGELTGGATLGLGDLIILAMLPLLLTVLATWV
                     GRVAVLRALREAL"
     gene            4587..5123
                     /locus_tag="VE968_05950"
     CDS             4587..5123
                     /locus_tag="VE968_05950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HZU51402.1"
                     /translation="MIIRVGSLLLLLYALCFVLFAFTLGRPAQPNAPATDAGVVLTGA
                     PGRIEHAIDVLKSRKVERLLVDGVDPAVTKADLARRIAGSATWFGCCVDLGSESVDTR
                     SNAEEASRWLSAHKYRSLRLITSDWHMRRALYEFHRALPKRYEIVADAVRTEPSFLTL
                     FGEYNKYLLRRIAAWIDL"
     gene            5120..5824
                     /locus_tag="VE968_05955"
     CDS             5120..5824
                     /locus_tag="VE968_05955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HZU51403.1"
                     /translation="MTAFVRSLLYALVFYSMTGIWVLAGLAATLIGRKPTLAVVLSWV
                     ELHHWLVEHVLGIHVRVEGRIPAGPHLVAVKHQSMLETLEMVRLMNLPVIVIKKELAD
                     IPFFGWMTRRYGVIAVERSAGARALRALVEEGKQALNNGRPVIIYPEGTRVRVGETPR
                     LRSGFAALYRALALPVVPVAVDSGRLWGRGFVHRPGIATLRVGKMVPPGLKRDEVEAL
                     VHGEINALELSSEPCT"
     gene            complement(5801..8155)
                     /gene="pheT"
                     /locus_tag="VE968_05960"
     CDS             complement(5801..8155)
                     /gene="pheT"
                     /locus_tag="VE968_05960"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020817518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HZU51404.1"
                     /translation="MKFSLEWLKQHLETQASPEEISRKLTSIGLEVEGISSPSESLSS
                     FRVAKILTAQKHPQADKLQVLTVDAGTGEAVQVVCGAPNARAGMVGVFGPPGSYVPGA
                     DLTLKVASIRGVESRGMMCSSRELELGDDHSGIIELPADAPIGAPFATYAGLDDIVFD
                     VNVTPNRQDCMGVRGIARDLAAAGMGALKPLRVPAVAGSYKSPVPIRIEDPEGCPAFF
                     GRAIKGVHNGASPDWMQRRLKAAGQRTISALVDITNYVMLDLGRPAHVYDIAKLHGAL
                     RARKASNGEKVLALNEKEYSLEPFMTVIADDKRVHDIGGIMGGEESGVGEDTTDVMLE
                     VAYFTPENIARTGQALALTSDARIRFERGVDPAFLDDGLAILSGLILEICGGEPSEAE
                     RIGAPPTQKRKIKFDFKRTRELGGVDIPEQRQRQILESLGFELQGELVTVPTWRRDVE
                     SAADLVEEVLRMIGYDAVPSAPLWRAPGVAKPTATRAQLVERHVRRTAAARGLNEAIT
                     WSFISQDEARAFGGADWTLANPISEEMKVMRPSLLPGLLFAARRNLDRGTASVRLFEI
                     GRRYLGEGEHPTLGFLLAGERLPRTWQRGRAEPFDPFDAKSEILALLAAAGAPVSSLQ
                     VYPDGGPTWHPGRSARLGLGPKAILGTFGELHPGLLKRLDAPAGSIAGEIYLDAIPEP
                     RSSDRARPHYSPAALQPVKRDFAFVVPSELSAGKLLKAISAAQKGVITSVRLFDRFET
                     SEGLSLAFEVTLQPSEKTFTDEQIAQIAEQVVAAAEKLGARLRR"
     gene            complement(8152..9219)
                     /gene="pheS"
                     /locus_tag="VE968_05965"
     CDS             complement(8152..9219)
                     /gene="pheS"
                     /locus_tag="VE968_05965"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010405999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HZU51405.1"
                     /translation="MTDAETMLDRIAAAASLTDLEAVRVAALGKTGSITALLKSLGAM
                     DPETRAVEAPKIHALREAVASAIAGRKAVLETAELERKLETEKIDLSLPPAEEVSGTV
                     HPVSQVMDELAEIFADLGFSIAEGPEIETQWYNFTALNMPANHPARAMQDTFYLEPRV
                     PDEEPRVLRTHTSPVQIRAGETRGAPLYVIAPGRVYRSDSDATHTPMFHQIEGLVIDK
                     GVTFGQLKWTLQAFVSAFFERDDLAMRFRPSYFPFTEPSAELDIGWSSEKGRRVVGGC
                     EGWMEILGSGMVHPRVIRNLGLDPDEWQGFAFGCGIDRLAMLKYGMNDLRAFFDGDLR
                     WLRHYGFRALDVPTLSGGVGA"
BASE COUNT         1780 a         2822 c         2829 g         1979 t
ORIGIN      
        1 gcaagcagcg ttgtccgtag aacacgggct cgacagccgg acatcggttg gcgtgctcgc
       61 gcgaacaatt ctgctcgacg atcaggagtt gacgttcgtc gagggcactg tccgacgttc
      121 cgtcggaccg gcgcaggtgg agattggcgc agcgcgggaa tcgaatggcg gaagcgcagc
      181 ccacgcggcg ctgctcggca aatttgccgg cgtttacgtc aacgcggacc ttcttcttgc
      241 gaacgatttt cacttgcagg ggacgtcgac gccaatcagt tcacgcgagg cgcgtctcgc
      301 gctcgatgcg ccgctccggc tcggtcgaac ggttatcccg gcgcacgccg aggttcacta
      361 ctcgagcctc cttgatggaa ccaagacgct cgatgctgcg gcgcgcctgt cggtgagcgt
      421 agaccgcttc aatcttggaa ccgcactgaa tttccacagg gattatgtca cgagtggtcc
      481 ttcgccgccc ggggagacat ggatatcgtt gctcggcagc ggccatgtcg gagcggtgcg
      541 ccttcgatcc gacaccgaat tcgacgtggg cccttcagcc cgtttcaaga gtgtcgagct
      601 ttcggcctac tggacggcaa ccgatcacgc cgactgggaa accgaccttg tctatgacgg
      661 gctccagaaa cgaactcgag cccaaatcac gcacatcctt aggtttgata cctttgcctt
      721 atcactcacg ggtgaggccg caaccgacgg agcagtagcg ttcggattca acttgaactt
      781 ctcgctcgat ccgaagcacg gattaaacct ctctcgtcgt ccgcttgcag aaggaggcat
      841 gatccacgca accgtgtttc gcgacttgaa cgacaatggt gtccttgatc ccggcgagcc
      901 cctcgagaaa ggcgctttga ttaccacggg aacccgtcaa gccgagcgaa agacggatgc
      961 gaatggcgcg gttaccgtcg gcggcctcag cccctatgtc ccggtaccgg tggggatcga
     1021 tacgacgagc ctagacgacc caatgctcac accgaaaaat gccctccagg tcgtcgttcc
     1081 tcgtcccggt gtctcagccg acgttctcat cccgcttgtc ggtggcggtg acatcgaggg
     1141 agcgctcatg aagagcggcg aactcggatt tgagggggtt gacatcgaac tggtcgataa
     1201 gaacggcaag gttttcgcga gcgcgagaac cgacttcgac gggttcttcc tgttcgagcg
     1261 cgtgccttac ggcacctaca gcattcgggt taatgcaaaa tccgcgagcg ccgcaaagat
     1321 tgcttccgag ctcggggtga aggtcagcgt gaccgctgac cattcggtcg tacgactagg
     1381 ctcgatccag gccgcgaagg aactgcgtgt cgcgaacgcc gcgacggcga agccggtgcc
     1441 atagcggccg acgtacttcc gagcatgcaa cgcccagcca ttcctggatt gcctggtgct
     1501 tggtgcggtc gagaagactc gaacttccac ggcctttcgg ccacagcgac ctcaacgctg
     1561 cgcgtctacc agttccgcca cgaccgcacg tcatgaaatt cgccggctcc acgatgtgcc
     1621 ggcactggca aggcggggcc cgtagcaaag ccactcgggc ggcgcaatgg cacttcagcg
     1681 ctggacaaaa cgctccagat cggcacaatt ccttacaacc cgtttaccat ttgccgccga
     1741 cacgcgttgg gcatgatgcc aatgatccta ttgttgccag cagccgtcgc cattgcagca
     1801 ccaccatcga aggctgctgc gaccgtcgaa tccactgcaa cgatcagggt cttgcgggcg
     1861 gtcacattga agctcgacgg atcggcaaac ccggagctcc ccccgccacg ctcgacggtg
     1921 atcaagcgcg agaacgggtc attcgatcgc gcgaaagtct tcgatttcca gtaagctaga
     1981 gtccagcagc tttcccgtcg ccaagagtga tcgtcagctc gtccccgcca ggaggaacgc
     2041 tgacctccgc actgttgaaa ctgacgcttc cgcccgcggg cagtgtctga gcaggaggct
     2101 gaatcgtcca gctgtagaca accttaccgc cgcgattctt gagctgcgcc tgaattggcg
     2161 ggacgacctg ctctttcgcc gatggattaa tgacgcggcc ggtcagcgta agcaggtcgt
     2221 tgccactttc aagatgctgt cggtccatgt gggtcgtgac cagctgcaat ggtgttgccc
     2281 ctgcgcttgc aaggccgagt ttcgccttca gcgcaggtgg agcgaaaacc cagaacgcgg
     2341 cggcggcggc aatgatgacc agaatggcaa taaggagcgc ggtaccagtg ccactacggg
     2401 aaggctgttc ctcgtcttcc gcgaacgggc tgaagatatc ggcctcgtct tctgccgtcg
     2461 gcggctcgcg ccagtcttcg tgtacgcgcg ccgtttccgt tgactgctcg cctgcgtcat
     2521 ccaatctctc atcagcagct gttgactgct cgcgtgccga ggagcccgcg ccagcgtcaa
     2581 tcactgcctc ttcataggct cgctgctcgg cttcaggacc acttcgtggt tcgataagtg
     2641 ttgcgctggc gagactttca tcatgtgctg tttgctcgcc tgcgcctcca gccgcctcgt
     2701 tccgatcttc cgcttccgat gggtcagtgg cttcgaccgg ctccaccgat ccagtcggga
     2761 gcacctcgtc ggcaacttca ggattctggt gccagctgtg cttgcaggcg gcgcatcgca
     2821 cctgtcgccc ttcgggcggt atggcgccat ccttcaccac atattgcgtt ccgcaattgg
     2881 ggcaggtgag gatcatatgc gcaaaaccct cttccgagac ggtgagctga cggtaaacag
     2941 gaatgattga cacttggcaa gtttccggag cttgcccaag gctcataaca acgctttggg
     3001 ggaggaagtg gctgcagttg cggaattcga cagcgtgggc ctgcgctacg gcacgggcgc
     3061 tgaagtgctg cgggacctcg atttccgcct ccgaaccggc gcgttctatt tcctgactgg
     3121 cccctcgggc gccgggaaga cttcgctcct gaagcttttg tatctcgcac agcggcccac
     3181 gcgcggtcgt atccgattgt tcggtgagga actaagcgaa gcaccgcgcg aagcgcttcc
     3241 gccatttagg aggcggatcg gcgttgtgtt ccaggatttc cgcctggttc gtcatctctc
     3301 cgcttttgat aatgttgcgc tgcctttgcg cgttgccggt gtgaaggagg aggaagtcga
     3361 gggtccggtt cgcgagatgc tggcgtgggt cggccttgcc gaccgagcaa gtgccaggcc
     3421 accgacgcta tcgggcggtg agcagcagcg cgttgctatc gctcgtgctg taatcaaccg
     3481 gcccgagctg cttgtcgcgg atgaaccgac ggggaacgtc gatgccgaaa tggcaaaccg
     3541 actcatgggt ctgtttaccg ctttgaatcg cctcggaacg acggttgtcg tcgccaccca
     3601 cgacatgggc ctcattacgg caacgcccgg cgcacagtta atccgattgg aaaacggaac
     3661 actcgacgat ccaacgggag cactcaagaa cccgccgcga cccccgagga gcgcctcttg
     3721 atgttccaat ggttctttgt ctcgccagcc gaacgacgtc tgctcggcgc atcgtcgcgt
     3781 cgtgcgccta cgccctgggt cattgccatc atgagtttca cgatcatgct gatcgccgcc
     3841 acagggctcg cacttgcgaa caccgcgcat gttcttagtc ggggaattca gtcgcgctat
     3901 gcactcgaaa gtccgggcgg gggaacgaat attcaacggc ttgtggcgac acttcgctcg
     3961 accgacggca taagtgcggt gagtgccgtt cctgaagcag aaatgcggcg aacgctcgag
     4021 aagtggctcg gaccagaagc gcagagtacc gagctgccgg tgccggcact gatcaacttc
     4081 gacgccgccc cacgcgcgaa cctcaatgcc ttggaggaac gcgctcgcgc gattgctcct
     4141 ggctcacggg tcatcgctca gaaggaaagt gtcgctccat tgctccagtc gctcaatctt
     4201 ctccagatag tgtcgctcgg cttggtcttt ttacttagtg ccgcggccgc cgcagccgtc
     4261 gtgctcgctg cccgtggtgc gctcgacagc catcgattta cgatcgaagt catgcacgga
     4321 gtgggtgcga cggaccttca ggtaacacat ttgtttcagc gcaagattgc tattgatgct
     4381 tgcatcggaa gcgtcgcggg cggcgctgcg gccgctctgg tcttgctctt gctcgcgggc
     4441 ggcgcagcct tcgccggtga actgaccggc ggagcgacac ttggtctcgg cgatttgatt
     4501 atccttgcga tgttgccgct gctcctgacg gttcttgcga cctgggtcgg ccgcgtcgca
     4561 gttctccgag ccttgcgcga agctctatga tcatccgcgt cggttcgctc ttgctgcttc
     4621 tatatgctct ttgtttcgta ctctttgcat tcactctcgg ccggcccgct cagccgaatg
     4681 cacccgccac tgacgctgga gtagtgctaa ccggcgctcc agggcgcatc gaacacgcaa
     4741 tcgatgtgct caagtcgcgc aaggtagagc gcctccttgt tgacggcgtt gaccctgcag
     4801 tgacaaaggc ggatttagcc cgcagaatcg ccggcagtgc cacttggttc ggctgctgtg
     4861 tcgatcttgg cagcgaatcc gtcgacacgc gttcgaacgc ggaggaggcg agccgctggc
     4921 tttctgctca caagtaccgg tctcttcggc taatcacgag cgattggcac atgcgccgtg
     4981 cactctatga gtttcacaga gcactcccga agcgatatga aattgttgcc gacgcggtga
     5041 gaacggagcc aagcttcctc acgctctttg gcgagtacaa caaatatctg ttgcgacgca
     5101 ttgccgcctg gatcgattta tgacggcttt cgtccgttcg ctgctttatg ctctggtttt
     5161 ttattcgatg accggcatct gggtccttgc tggtctcgcc gcgacattga tcggacgaaa
     5221 accgacgctc gccgtcgttc taagctgggt cgagcttcac cattggctcg tcgagcacgt
     5281 gcttgggatt catgtgcgcg ttgagggccg catcccggct ggtccgcact tggtagcagt
     5341 caagcatcag tcgatgctgg aaactcttga aatggttcgg ctgatgaatc ttccggtaat
     5401 cgtcatcaag aaggagcttg ccgacattcc gttcttcgga tggatgactc gtcgttacgg
     5461 cgtgatcgca gtcgagcgtt ccgctggcgc gagggcgctt cgcgcgctcg tcgaagaagg
     5521 aaagcaggcg ttgaataatg gtcgacccgt gatcatctat cccgaaggta caagagtgag
     5581 agtcggtgag actcctcgct tgcgatccgg gtttgccgca ctttatcgag cgcttgcgct
     5641 tccggtcgtt cccgttgcag ttgatagcgg tcgcttgtgg ggccgcggat tcgtccatcg
     5701 gcctggaata gcaacgctaa gggttggcaa aatggtaccg cctggcctca aacgtgatga
     5761 ggttgaggcg ctcgttcacg gcgagatcaa cgcgcttgag ctatcttctg agccttgcac
     5821 ctagtttttc ggcggcggcg accacttgtt cggcaatctg cgcgatttgt tcgtccgtaa
     5881 aggttttttc cgacggctgc agagtgactt cgaaggccaa cgacaaacct tcggaagtct
     5941 cgaaccggtc gaacagccgg acggacgtaa tcaccccctt ttgggcagcg ctgatcgctt
     6001 tcaagagctt tccggccgag agctccgaag gtactacaaa ggcgaagtca cgcttgaccg
     6061 gctgaagtgc agcgggagag tagtgtggcc gagcacgatc gctgctgcgc ggctcgggaa
     6121 ttgcgtcaag gtagatttcg cccgcaattg accctgccgg agcatccagt ctcttgagca
     6181 ggcccggatg aagctcgccg aaggtgccga gtatcgcttt agggccgagg cccagcctcg
     6241 ccgaacgccc cgggtgccat gttggaccgc catcggggta tacttggagg ctcgagacgg
     6301 gagctcctgc tgcggcgagc agagccaata tctcggactt cgcatcgaaa gggtcgaacg
     6361 gttccgcccg tcctcgctgc cacgtgcgag gtagccgctc gccggcgagc aggaacccta
     6421 gagtcggatg ttcgccctca cccaaatacc gtcggccgat ctcgaataat cggactgagg
     6481 ccgttccgcg atcaaggttg cgccgcgctg caaagagaag acctggcagg agggacggcc
     6541 gcatcacctt catttcttcg cttatcggat tggcaagcgt ccaatcagcg cccccgaacg
     6601 cccttgcctc atcctgcgaa atgaagctcc aggttatcgc ttcgttcaat ccgcgcgcgg
     6661 ccgcagttcg ccggacgtga cgctcgacga gctgcgcgcg tgtcgccgtc ggcttggcga
     6721 cacccggtgc tcgccagagg ggagcggaag gcaccgcgtc atagccgatc atgcgaagaa
     6781 cctcttcgac aagatcggcg gcgctctcga cgtcacgtcg ccaagtcggc acggtgacaa
     6841 gctcaccttg gagctcaaat ccgaggctct caagaatttg tcgctgacgc tgctcgggaa
     6901 tgtcaacccc gccaagctcg cgcgtgcgtt tgaagtcgaa tttgattttg cgcttttgtg
     6961 tgggcggagc accgatgcgc tcggcttccg aaggttcacc gccacagatt tcgaggatca
     7021 ggccgctgag gattgcaagt ccatcatcca gaaaggcggg atccacgcct cgctcgaaac
     7081 ggatgcgggc gtcactcgtc agcgcaagcg cctgccccgt tcgcgcgatg ttttcgggcg
     7141 tgaagtaagc aacttcaagc atcacgtccg tcgtatcttc gccgacgcct gactcctcgc
     7201 cgcccatgat gccgccgata tcgtgaactc gcttgtcatc ggcgatcacg gtcatgaacg
     7261 gctcgagcga atattccttc tcgttgagcg cgagtacctt ctcgccgttg ctcgccttgc
     7321 gagccctaag tgcgccgtga agcttggcga tgtcataaac gtgagcggga cgaccaagat
     7381 cgagcatgac gtaattggtg atgtcgacga gcgcggaaat ggtgcgctga ccggcagcct
     7441 tcaaacgtcg ctgcatccag tcgggcgatg ctccattgtg gacccctttg atcgcacgtc
     7501 cgaaaaaggc cggacagcct tcggggtctt caatgcgaat gggaacgggc gatttgtaac
     7561 tgccggcgac cgcgggaacg cgaagaggct taagggctcc catcccggct gcagcaagat
     7621 cacgcgcaat cccgcgcact cccatgcaat cttgccggtt tggcgtgacg ttcacgtcga
     7681 aaacgatatc gtcgagcccc gcataagtag cgaatggtgc tccgattggc gcatcggccg
     7741 gaagctcgat gattccactg tggtcatcgc cgagctcgag ttctcgtgag gagcacatca
     7801 tcccgcggct ttcgacgccg cgaatggagg ctaccttaag cgtcagatcg gcgcccggca
     7861 cgtagctgcc gggtgggccg aatacaccga ccatcccagc tcgcgcgttt ggcgcgccac
     7921 acacgacctg gaccgcttcg cctgttccag cgtcgaccgt caggacctgt agcttgtcgg
     7981 cttgggggtg tttttgggcg gtcaatatct tcgcaacacg aaaggagctg agtgactcgg
     8041 acgggctcga aatgccttcg acctcaagcc cgatcgaagt tagcttgcgc gaaatctcct
     8101 ctggggaggc ttgtgtctca aggtgctgtt tcagccattc gagcgagaac ttcatgcccc
     8161 tactcctcct gacagggtgg ggacatcgag cgcacgaaag ccatagtgtc taagccagcg
     8221 caggtcgccg tcgaaaaagg ctcgtagatc gttcatgcca tatttgagca tggcgagacg
     8281 gtcgattccg cagccgaacg cgaagccctg ccattcatcg ggatcgagac ccaagttgcg
     8341 gatgacgcgc ggatgaacca tgccgctgcc gaggatttcc atccagccct cgcagccgcc
     8401 gacaacgcga cgaccctttt cactggacca gccaatgtcg agttcggccg acggctcagt
     8461 gaacgggaaa tatgatggcc gaaagcgcat cgcgagatca tcgcgctcga aaaacgcgct
     8521 gacgaaagcc tgcaacgtcc acttgagttg gccgaacgtc actcctttgt cgataaccag
     8581 cccttcgatc tggtggaaca tcggtgtgtg ggtggcgtcg ctgtcggatc gatagacgcg
     8641 cccaggagcg atcacataga gcggtgcgcc gcgcgtttcg ccggcgcgga tctgcacggg
     8701 agatgtgtgc gtgcgaagaa ctcgaggttc ctcgtcaggt acgcgcggct ccagatagaa
     8761 tgtatcttgc attgctcgcg ccggatggtt tgcgggcatg ttgagcgccg tgaaattgta
     8821 ccattgggtc tcgatctcgg gtccctccgc gatcgagaaa ccgaggtcag caaagatttc
     8881 ggcaagttcg tccatgacct ggctgaccgg atgaacggtt cccgaaacct cctcggcagg
     8941 cggcaaggac aaatcgatct tctccgtctc aagcttgcgc tcgagttcgg ctgtttcgag
     9001 gactgccttg cggccggcaa ttgcgctcgc cactgcctcg cgcagtgcgt gaattttcgg
     9061 tgcttcaact gcgcgagtct caggatccat cgctcccaag gacttgagga gagcggtgat
     9121 tgagcccgtt ttcccgaggg cggcaacgcg caccgcctcg agatcagtca ggctagcggc
     9181 ggccgcgatt cggtcgagca tggtttctgc gtcggtcatt gccgacgggc tctagcaatg
     9241 ccctgctcta aattggaacc cctggccgat cagctcggaa cgaacggata tggcgaaatg
     9301 gatttgcggt tttcttcgac ggcaagcatt cttcccgcag gcggagttgc acgataggcg
     9361 cactggagcc tcggacagat ggcgcaagct ggcccaactg gagtcgccgg
//
LOCUS       DASRBJ010000215         5218 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_735869,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000215 DASRBJ010000000
VERSION     DASRBJ010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5218
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_735869"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1275
                     /gene="radA"
                     /locus_tag="VE968_05970"
     CDS             <1..1275
                     /gene="radA"
                     /locus_tag="VE968_05970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013039514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HZU51406.1"
                     /translation="NSLVQESAEVSSIFAARHNLQGGGQVIPLVGLECPAALPQRIAT
                     GIAEFDRAVGGGIVPGSALLVGGDPGIGKSTLLLQVAARLAAGRESIVYVSGEESAEQ
                     VRLRAVRLGLGGSPVQLAAATSVRDILTTLSEGAPPALVIIDSIQTMHSDLIDGAPGT
                     VSQVRASAQELVRFAKERGSALILVGHVTKDGTIAGPRVLEHMVDTVLSFEGERSHQY
                     RVLRALKNRFGGTDEIGVFAMEGHGLTEVPNPSALFLTHRGEPVSGTSVFPAIEGSRP
                     VLVEIQALTVRLATGATPRRAAVGWDSGRLAMILAVLEARCGISFATAEVYLNVAGGY
                     RLNDPAADLAVAAALVSALCERPVPSECVVIGEIALSGEIRPVGHAGLRLKEAAKLGF
                     DCAWVPRGSKSDGLRTAEFSNVRQLVDQVLGR"
     gene            complement(1272..2294)
                     /locus_tag="VE968_05975"
     CDS             complement(1272..2294)
                     /locus_tag="VE968_05975"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HZU51407.1"
                     /translation="MGAYFRPDTATRSRPAMGDLLGNSTPMLSIVVPVKNEEQAILPF
                     INRVAPILDEVCDEAGWEILFVDDGSTDSTLGVIAASNRRDSRVRALSLSRNFGKEAA
                     LSAGLDYAGGKAIVPMDVDMQDPPEVLPQLVAKWREGYEMVFGVRRGRKSDPFAKRVT
                     AGLYYRAHNIVSSDKIPEHAGDFRLMDRSVVDVIRALPERNRFMKGLFAWAGFKQTAV
                     EYDRAEREHGTSKFNFWKLWTLALDGITSASTVPLRIWSYVGALVAFLALGYAAFLAL
                     DTMFFGNSVPGYASIMVSVLFLGGIQLISLGVLGEYVGRILTETKQRPLYVIRDTVGL
                     DPQFLG"
     gene            2387..3133
                     /locus_tag="VE968_05980"
     CDS             2387..3133
                     /locus_tag="VE968_05980"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HZU51408.1"
                     /translation="MERAVFDRMAELDEHHWWFRARRRILEALIERVIRPPREARVLE
                     VGCGTGHNLPMLAKFGSVEASELDPSARALAAKRLGARVLEAKLPDVSMFERNGYDLI
                     ALLDVLEHVPDDLGSLRAIHRRLKPGGALLLTVPANPWMWSAHDCAHHHFRRYTRRKL
                     ADLFLRSGLEVQLLSYFNSLLFAPIAAARIVGKISGKDGADDNLPGARTNAILETIFG
                     LEATLLGRVRFPFGVSLVAVVRRPAIKDEP"
     gene            3184..4599
                     /locus_tag="VE968_05985"
     CDS             3184..4599
                     /locus_tag="VE968_05985"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZU51409.1"
                     /translation="MNRETTIQTTDDHLDGLPIPRRYWSAAAIWLALAMAVLDGAIAN
                     VALPVIARELGASPAASVWVINAYQLTITVLLLPLAALGDRIGYKCIYLPGLGLFTLG
                     SVACAAGGTLDLLVAARVFQGIGAACIMSMNAALVRATYPADMLGRGIGYNAMVLSIS
                     AAIGPTLASLILSIGSWQWLFLINLPIGIAALIVGKKALPGPQGHGRPFDWPSALLSA
                     AMMGLVVSGAETFARESSLIGVVMIAGGIASGVALVWREWGRPTPLMPLDLLRIPIFT
                     LSITTSIVSFAAQMLAYVAIPFLLQSVLGRSVFATGLLMTPWPIAVGIAAPFAGRLAD
                     RVPAGLLGGIGLGIFAVGLFFLSRLGTHPSNLDIVWRMAVCGLGFGFFQSPNNRTIVS
                     SAPKPRSGAAGGMLATARLLGQTAGAVTVGVAFHVAGVRISSELMLAAAIAALVAGGI
                     SLLRLRVSPPSRVAVYRPILD"
     gene            4643..5170
                     /locus_tag="VE968_05990"
     CDS             4643..5170
                     /locus_tag="VE968_05990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HZU51410.1"
                     /translation="MTALDVFVFLLLFGGAAIGFVRGFVHEVISLMAWIVAIAMLKLF
                     HWQLWSGLENSFHTNSAAAAVLAFAILFIPSFLLVKFLARSLGGRTRRHAVLGPFDRV
                     LGGGFGALKGLLGATLFFLLANLATDMVYGPQAERPQWMTKSHTYQLLNASGRAIVDW
                     VQAQRLRARPAGKSE"
BASE COUNT          900 a         1601 c         1587 g         1130 t
ORIGIN      
        1 aactcgctcg ttcaggaaag tgcggaagtc tcgagcatat tcgcggcgcg gcacaatctc
       61 cagggtggtg ggcaggtcat tcccctcgtc ggactcgaat gccctgccgc gcttcctcag
      121 cgaattgcga caggtattgc cgagttcgac cgcgccgttg gtggagggat cgtcccgggc
      181 tccgccttgc tcgtcggcgg ggatcctggg atcggcaaat cgaccctgtt gctccaggtt
      241 gcggcacgcc tcgccgccgg tcgcgaaagc atcgtttatg tttcaggcga agaatcggcc
      301 gaacaggttc gactgcgcgc cgtccgcctc ggactcggcg gcagcccggt acagcttgcg
      361 gcagcaacgt cggtccggga catcctgacg acattgagtg agggagctcc gcctgcactc
      421 gtcataatcg attccattca gacgatgcac agcgacctca tcgacggcgc tcctggaact
      481 gtcagccaag tgcgcgcgtc ggcacaggag ttggtccgtt ttgcaaagga gcgtggctct
      541 gctctcatat tggttgggca cgttaccaag gatggtacga tcgccgggcc gagagtgctc
      601 gagcacatgg tcgacaccgt cctaagcttc gaaggagagc gaagccatca atatcgggtt
      661 ttgcgagcac ttaagaaccg ctttggcgga accgacgaga tcggcgtctt tgcaatggaa
      721 ggtcatggat taaccgaggt ccccaacccg tcagctcttt tcctgaccca tcgcggcgag
      781 ccggtcagtg ggacaagtgt ctttccagca atcgaaggct cgcgaccagt attggtggaa
      841 atccaggctc ttaccgtccg cctggcgact ggggcgacgc cgcggcgcgc cgcggtcgga
      901 tgggacagcg gccgcctcgc aatgatcctc gcggttctcg aggcacgctg cggcatcagc
      961 tttgcaacag ccgaagttta tctgaacgtt gcgggcgggt accggctgaa cgatcccgcc
     1021 gctgatcttg cggttgccgc cgcccttgtt tctgcgctct gcgagcgacc agtgccaagc
     1081 gaatgcgttg tcattgggga aattgctttg tctggtgaaa tccgtcctgt cggccacgct
     1141 ggcttgcgtc tcaaggaagc ggcaaagctc ggctttgact gtgcgtgggt cccgcgtggg
     1201 agcaagagcg atggtttacg caccgcggag ttctcgaacg tgcggcagct cgttgatcag
     1261 gtgcttggtc gttagccgag aaactggggg tcaaggccga cggtgtcacg gatcacgtaa
     1321 agtggacgct gcttcgtctc ggtcagtatc cgccccacat attcaccgag cacgccaagc
     1381 gagatgagct ggatgccgcc gaggaaaagc accgagacca tgatcgaagc atagcccgga
     1441 accgagttgc caaagaacat cgtgtcgagc gcgaggaatg ccgcatagcc gagcgcgaga
     1501 aatgcgacga gcgctcccac atagctccag atgcgcagcg gaaccgtcga tgccgacgtg
     1561 atcccgtcga gggcgagcgt ccaaagcttc cagaaattga acttgcttgt gccgtgctct
     1621 cgttcagcgc ggtcgtattc aaccgccgtc tgcttgaacc ctgcccaggc aaagaggccc
     1681 ttcataaaac ggttgcgttc gggaagcgcc cggatcacgt ccaccacgct tcggtccatc
     1741 agtcggaagt cgccggcgtg ctccgggatc ttgtcggacg agacgatgtt gtgcgctcga
     1801 tagtagaggc ctgcggtcac tcgcttggcg aagggatcgc tcttgcggcc gcggcggacg
     1861 ccgaagacca tttcatagcc ttcgcgccat ttcgcaacga gttgaggcag aacttcgggc
     1921 gggtcttgca tgtcgacatc catcggaacg atggctttgc caccggcata gtcgaggccc
     1981 gcgcttagcg ccgcctcctt gccgaagttg cgcgagagtg acagtgcgcg aacgcgactg
     2041 tccctgcggt ttgacgctgc gatcacgccg agggtcgagt cggtgcttcc atcgtcaacg
     2101 aagaggattt cccaacccgc ctcgtcacac acctcgtcaa gaatgggcgc gacacggttg
     2161 atgaagggaa ggatcgcttg ttcctcgttc ttcacgggaa ccacgatcga gagcatgggc
     2221 gtgctgttgc cgagaagatc gcccattgct ggacgtgacc gcgtggccgt gtcgggccgg
     2281 aaatatgcgc ccactggctt tctcctcgaa atgcctcgct agatcgaaat ggtttacggc
     2341 tggtttacct gttgcgcgca gaagagcgct cggcaggggg gctttgatgg aacgcgccgt
     2401 cttcgatcgc atggccgaac tcgacgaaca ccattggtgg tttcgcgcgc gccgtcgaat
     2461 tctcgaggcg ctcattgaac gtgtcatccg gccaccgcgc gaggctcggg tactcgaagt
     2521 tggctgtgga accggtcaca atctcccgat gctcgccaaa ttcggttccg tggaagcgag
     2581 cgaactcgat ccttccgctc gtgcgcttgc cgcaaaaaga cttggagcaa gggtgttgga
     2641 agcaaagctc ccggacgtct cgatgttcga gcgcaacggc tatgatctca tcgctctcct
     2701 cgatgtcctc gagcacgttc ccgacgacct tggttccctt cgcgccatcc atcggcgact
     2761 gaagcccggc ggtgcgctgt tactgacggt tcccgccaac ccatggatgt ggagcgcgca
     2821 tgattgcgcg caccatcact tccgccgcta cacgcgacgc aagcttgccg acctattcct
     2881 tcgaagtggc ctcgaagttc agctgctaag ctatttcaac agcttgctgt tcgcgccgat
     2941 cgccgcggca aggatcgtcg gcaagatcag tggaaaggac ggcgccgacg acaatctgcc
     3001 cggcgctcga accaacgcca ttctcgagac catttttggc ctagaagcga cattgctggg
     3061 gcgagtgcgg tttcccttcg gagtgagtct cgtcgccgtc gtccggcgac ccgcgataaa
     3121 agacgagccg tagcatccgt tgcccttgcg gttcgttggg gtgccagcaa tggacctcga
     3181 ctagtgaatc gcgaaacaac gatccaaaca actgacgatc acctcgatgg gcttccaatc
     3241 ccacgccgtt actggtcggc ggcggccatc tggcttgccc ttgcaatggc cgttctcgac
     3301 ggcgccattg ccaatgtcgc gctcccggtg atcgcgcgcg aacttggcgc ttcgcccgcc
     3361 gcatccgtgt gggtcattaa tgcctatcag ctgacgataa cggtcctgct gctgccgctc
     3421 gccgctcttg gtgaccgcat tgggtacaag tgcatctatc ttccggggct tggcttattc
     3481 acgctcggct ccgtcgcctg cgcggcgggc ggaacacttg atctcctcgt cgccgcgcgc
     3541 gtgttccagg ggattggcgc tgcgtgcatc atgagcatga atgcagcgct cgttcgcgcg
     3601 acttatccgg ctgacatgct cggccgaggg atcggctaca atgctatggt gctctcgatc
     3661 tcggcggcga ttggaccgac gcttgcatcg ttgattctca gcatcggttc ctggcagtgg
     3721 ctcttcctta tcaatctccc gatcggcatt gccgcgctca ttgtgggcaa gaaggcgctt
     3781 cctggaccgc aaggtcatgg ccgacccttc gactggccct ctgctcttct cagcgcggca
     3841 atgatgggac ttgtcgtttc aggcgcggag acattcgcac gcgagagttc actgatcggc
     3901 gttgtcatga tcgcgggtgg gatcgcttca ggagttgcgc tggtctggcg tgaatggggt
     3961 cggccaacgc cgctgatgcc cctcgatctc ctgcgcattc cgattttcac gctgtcgatc
     4021 acgacctcga tcgtgtcctt cgcggcgcaa atgctcgcct atgtcgcaat tccgttcctg
     4081 ctacagtcag tactcgggag gagcgtcttt gcaacgggac tgctcatgac tccgtggccc
     4141 attgctgttg gaatcgctgc gccattcgcg ggtcggctcg ccgaccgcgt cccggccggg
     4201 ctacttggcg gcattggcct tggaatcttc gccgtgggtc ttttctttct gtcacggctc
     4261 ggcacgcacc ccagcaatct cgacatcgtg tggcgcatgg cggtctgcgg cctcggattt
     4321 ggctttttcc agtcgccaaa caatcgaacg atcgtcagct ccgcgcccaa gccacgttcg
     4381 ggtgccgccg gtggcatgct tgctaccgca cgactgctcg ggcagacggc cggcgccgta
     4441 acggttggcg tggcgtttca tgtcgccggc gtccgaattt cctctgaact gatgcttgcc
     4501 gctgcaatcg cggcgctcgt cgctggcggg atcagccttc ttcgcctgcg cgtgagcccg
     4561 ccgagccgcg tcgccgtcta ccgtccaatt ctcgactaga gcaggctttc atcggctgtt
     4621 cctgtccgct agcgccacag gcgtgaccgc actcgacgtc ttcgtattcc tgcttttgtt
     4681 cggcggcgcc gcgatcggtt tcgttcgcgg cttcgttcat gaggtgatct cgctcatggc
     4741 ctggatcgtc gcgatcgcca tgctcaagct gttccactgg cagctatgga gcggcctcga
     4801 gaacagtttt cacaccaatt cggccgccgc ggcagtgctt gccttcgcaa tcctgttcat
     4861 cccgagcttc cttctggtga agtttcttgc ccggtccttg ggcggaagga cccgtcgcca
     4921 tgccgttctt ggtccattcg accgcgtgct cggagggggg ttcggcgcgc ttaagggact
     4981 tctcggtgcg accttatttt tcctcctcgc gaaccttgcg accgacatgg tctatggacc
     5041 ccaggccgag cgaccccagt ggatgaccaa gtcacacacc taccagctgc tgaatgcaag
     5101 tgggcgggca attgtcgact gggtccaggc tcagcggctt cgcgcaagac cggcgggtaa
     5161 gtcggaatga tccggcttca cgatacgttg agccgcgaga agcgcgactt tgtccccc
//
LOCUS       DASRBJ010000216         2362 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_21033,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000216 DASRBJ010000000
VERSION     DASRBJ010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2362
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21033"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(86..802)
                     /locus_tag="VE968_05995"
     CDS             complement(86..802)
                     /locus_tag="VE968_05995"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HZU51411.1"
                     /translation="MATFILIHGAWHGGWCWERVAPLLRDQGHEVVCPDLPGMDPDQS
                     PLGDDPIDEWAHFVAELASRARQPVILVGHSRGGLVISEAAERVPDAIDCLVYLAAFL
                     LQSGQSLADVANRYPEVGPGPLIKRAADPSRLIIDANAAMPIFYNLTDEEDAKAASRR
                     LTPEPLASMVTRLRISNERFGRLPRAYIECVHDRAVSLEMQREMEAALPCEPVITLSC
                     DHSPFYSAVPELVAAFLSLV"
     gene            complement(956..1363)
                     /locus_tag="VE968_06000"
     CDS             complement(956..1363)
                     /locus_tag="VE968_06000"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HZU51412.1"
                     /translation="MDESSVSQNRRSNRSPVLLSAKIEVGGTEVSVVLRNLSSEGALI
                     EGAELPPEGATTLFHRNELTVEGRIIWVEGRYAGLAFDRQLEREELLRNVPKPRQQVD
                     SQFRRPGLACAPLSETDRKMVQMWAAPRVFRDN"
     gene            complement(1439..2017)
                     /locus_tag="VE968_06005"
     CDS             complement(1439..2017)
                     /locus_tag="VE968_06005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4337 family protein"
                     /protein_id="HZU51413.1"
                     /translation="MVEPADAKELIDEAIEEVERADKAERALEKRFRDRVSILVGLFA
                     VLLAIIHVAAASNARESLLKTVNASDTYNYMEAKIIRESLLKSLAQLPSLDSATQHDM
                     LKQAARLRNPDAAGHGIVQLQKQADELRSDGERSARSGEWYEFAETAMQVAIVLLSIA
                     LVARSWIIVAGAASLAGVGAFLAALTAVGFLK"
     gene            complement(2075..>2362)
                     /locus_tag="VE968_06010"
     CDS             complement(2075..>2362)
                     /locus_tag="VE968_06010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017502397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HZU51414.1"
                     /translation="ASGFGHLGDGNIHFHVRAGTRAASDWYEKEGLAITRFVDDLVTN
                     AGGSISAEHGIGQLKLAELGRLAPPPTIHALRAIKQALDPLGIMNPGKLVP"
BASE COUNT          482 a          720 c          684 g          476 t
ORIGIN      
        1 acccgcgata ttgatgatct taggtttatc gatcgatccc gcaatagcgt ttccaactcc
       61 actggccttt gacgctcacg agaaatcaga cgagcgacag gaaagccgca acaagctccg
      121 gcacggccga ataaaagggc gaatgatcac agctcagcgt gatgacgggt tcgcacggca
      181 gagcagcctc catttcacgt tgcatttcga gactcacggc acggtcgtgg acgcattcga
      241 tgtaagctcg cggcaggcga ccgaaacgtt cgttggagat tcgcaggcgc gtcaccatcg
      301 acgcgagagg ttccggtgtg aggcggcgtg aagcggcttt cgcatcttct tcatccgtca
      361 aattgtagaa gatgggcatt gccgcgttcg cgtcgattat gagccgcgat ggatccgccg
      421 cacgcttgat cagtgggccc gggccaactt cggggtaacg atttgcgaca tccgcgagcg
      481 attggccgga ctgcaagagg aaggcagcaa gatagaccaa gcaatcaatg gcatctggca
      541 cgcgctctgc agcttcgctg atgactaatc caccacggct gtgaccaacc agaatgacgg
      601 gttggcgtgc gcgcgacgcc agctcagcga cgaagtgggc ccattcatca atcgggtcat
      661 cgccgagagg tgactggtcc ggatccatcc ctggaaggtc cgggcagacc acctcatgcc
      721 cctgatcccg cagcagaggc gcgacgcgct cccagcacca gcccccgtgc cacgcaccgt
      781 ggatgagaat gaaggtcgcc atgtccggtt ggtttcccaa acgtcgtttt tgcaagcaac
      841 gagggtagca agctttgcgc cggctccaac attgcgcatc acatgaatct cgtcggctgg
      901 ctcgccaaag cagcacgcca ggtctttcac tgcctcaccg ttcagtagcg cttggtcaat
      961 tgtctcggaa cactcgagga gccgcccaca tctgcaccat cttccggtcc gtttcactga
     1021 gcggcgcgca agccagcccg ggtcggcgaa attgcgaatc gacctgctgg cgtggcttcg
     1081 gaacgtttcg cagcaattcc tcgcgttcaa gctggcggtc gaaggcaaga cccgcatagc
     1141 gcccctcgac ccagatgatg cgcccctcga cggtaagctc attccggtgg aacagcgtcg
     1201 tcgcgccttc aggaggcagt tcagcgccct cgatcagcgc cccctccgaa gagaggttgc
     1261 ggagaacgac cgagacctcc gtccccccca cctcgatctt tgcgctcagc aaaacaggcg
     1321 agcggttgga gcgccgattc tgactgacgc tgctttcgtc catgatcgag cgacttaacc
     1381 gaaatcggta aatgcttgat tgaagattgc ttgctcgaga cttggcttga gccgaagctt
     1441 atttcaaaaa tcccacggcc gtgagcgccg cgaggaatgc gccaaccccc gcaagcgaag
     1501 ctgctcccgc gacgatgatc catgaccttg caacaagagc aatggaaagt agcacgattg
     1561 caacctgcat ggccgtttcg gcaaattcgt accactcgcc acttcgcgcc gatcgctcgc
     1621 catcgctgcg cagctcgtcg gcctgtttct gcagctgaac gatcccgtgc ccggccgcat
     1681 cggggttgcg cagccgtgcc gcttgtttca gcatgtcgtg ctgtgtcgcg ctgtcgagcg
     1741 atggaagctg tgcaaggctc tttagaagcg actcgcggat gatcttcgct tccatgtaat
     1801 tataggtatc ggaggcgtta accgtcttga gcaaactctc gcgcgcattg cttgccgctg
     1861 caacgtggat gattgcgagg agaaccgcga aaagtcccac gaggatcgag acgcgatcac
     1921 gaaagcgctt ctcaagggcc cgttcggctt tgtcggcgcg ttcgacttcc tcgatcgctt
     1981 catcaatcag ttctttggca tcggcaggtt cgaccaattc acgtctcctc gcggcttgct
     2041 tgcagctttc gagcggcgag caaatgaatt ccgcttaagg gacaagcttt ccggggttca
     2101 tgatcccgag cgggtcaagc gcttgcttga tcgcgcgaag tgcgtggatc gtcggcggcg
     2161 gcgcgaggcg gccaagctcg gcaagcttca gctgaccgat cccgtgctcc gcggaaatcg
     2221 aacctccggc gttggtcacg aggtcgtcga caaagcgtgt gatcgccagg ccctccttct
     2281 cgtaccagtc gctcgcggct ctcgttccgg cgcgcacatg aaaatgaata ttgccgtcac
     2341 cgaggtggcc aaagccgctg gc
//
LOCUS       DASRBJ010000217         7536 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_735990,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000217 DASRBJ010000000
VERSION     DASRBJ010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7536
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_735990"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..884
                     /locus_tag="VE968_06015"
     CDS             <1..884
                     /locus_tag="VE968_06015"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HZU51415.1"
                     /translation="PGGQTWGPCYSPRAAQRCLLPANIRTNVSVMHAEVDRVGIFIGG
                     VQKAGTTSLHSYFMEHPALLAPRKKETHFFDNETVDWSNRDYRTDLHNKFYPKARLGA
                     IAYDATPITIFWPPAVERILAYNPDAKFIFLFRDPIERAFSHWRMEIERNAESLPFSA
                     AIREGRERLNGLPELHWDYRVYTYVERGFYGHQVERLLRQVPRDQLLFLSSTELATKP
                     SAVLATIADFLSIEPFPETSPRRVFVGSASTELAEGDVEYLSTIFSEDTQRFAALTDL
                     DVSDWLVCKPRTAALGR"
     gene            874..2247
                     /locus_tag="VE968_06020"
     CDS             874..2247
                     /locus_tag="VE968_06020"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase"
                     /protein_id="HZU51416.1"
                     /translation="MDDKRTNVLMIVCDDLNAWIGALGRHPQVKTPAIDALAARGSLF
                     TRAYCNAPYCNSSRISVFTGCLPSTTGVYEQEAFWTDPGRRKTYVEALRSAGYYAFGA
                     GKVFHGKYRYSVATRDQLTSAQWSDTQHRASIWDSFTPLSAEPLPTNRPLNGLVDFSD
                     FSEVPSKYYLFDWGAFPNDLEQQLPDSITANVVAEFLRSPPDQPFFCAAGIYKPHLPW
                     HVPKRFFDLYPLSKIVLPLVKDDDLDDVPEIAREWALDPPDHELVTRNNQWRHAVQGY
                     LAAISYCDSVIGRIIDALDASPARDNTIVALWGDNGFHLGEKLHWRKFALWEEATRIP
                     LIIVPPRGTKCAPRIAEPVSLIDLFPTITDLLGLSQGEPVDGSSLAALMGLSTERALP
                     RAAISTWGRGNHSVRHGQWRYTRYSDGSSELYDHSADPYEWTNLAKERRFAGRMRKLA
                     AFLPQDG"
     gene            2351..3301
                     /gene="galE"
                     /locus_tag="VE968_06025"
     CDS             2351..3301
                     /gene="galE"
                     /locus_tag="VE968_06025"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007011998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HZU51417.1"
                     /translation="MLALKDSGWSVAVIDDLSTGVRDAVPEDVPFYEGNIADRALVER
                     IFAEQGTEAIMHFAGSIVVPESVEKPLSYYGNNTVATHALIGTAVDAGIKHILFSSTA
                     AVYGAPEKVPVAEDDPKEPINPYGSSKLMTEWMLRDASAAHPFNYGALRYFNVAGADP
                     QRRTGQQGKGSTHLIKVAVETAVGLREQVAVYGIDYATPDGTCIRDYIHVSDLASAHV
                     AALEWLIAHPNENLVVNCGYGRGLSVLEVLDAVDRANGSPIKRVMQGRRAGDPPMLVS
                     ANRRILDTLDWRPRFNDIDKIVGDALAWERTLLERRSKAA"
     gene            3337..3870
                     /locus_tag="VE968_06030"
     CDS             3337..3870
                     /locus_tag="VE968_06030"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR02281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02281 family clan AA aspartic protease"
                     /protein_id="HZU51418.1"
                     /translation="MLRAYLAIVIAIGIAASLASHVLPSKVSGPEPRQQVEIVQPSPG
                     SDDAQAEQNVASLDGAVVLQRSENGHFYADVAVNGVPVRMLVDTGASGIALSQEDARA
                     AGIATSIGMNDVVGEGAGGSVHGDFVTIDRIALGPKSVEQMPALVLNGGEQSLLGQAF
                     LKQFASVEIHGDTMTLR"
     gene            complement(3779..4903)
                     /locus_tag="VE968_06035"
     CDS             complement(3779..4903)
                     /locus_tag="VE968_06035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51419.1"
                     /translation="MAWDVIFFIAGAILAWLTLRDVFDTVVVPGGSRASLRVTKRVGL
                     VLLVIWKRLRGRNRGISHAFAPLVLVSSFVIWMSLLALAFGLMAYAMRTHFEPHLESL
                     PEAVFMVGSAIVTIGLTGENVLGAGRWIILASGFCGLAVMTMAVTYLLEVQNSITRRD
                     IGIIKLNTSAGQPPSALTLLERYAAIRHKRGLPEVLEEGRNWCATVRQSHSAHPSLIY
                     FQSTSTGAGWAAALGALLDLSLFAEFLIDDDSLYGPAVLLKEEGERMAKELALISGVE
                     RVAEKTDQNALRSVAKRLADSGYKLRGAPDYADMARQRTDYSSCVDAIARHLGKPSAP
                     LMPSADARPGLSAASSYRRGSRPRRTASERPAQGATAHRR"
     gene            5048..5173
                     /gene="ykgO"
                     /locus_tag="VE968_06040"
     CDS             5048..5173
                     /gene="ykgO"
                     /locus_tag="VE968_06040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012177066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HZU51420.1"
                     /translation="MKIRNSLKSLKSRHRDCRVIRRRGRTYVINKTNRRFKARQG"
     gene            5385..5666
                     /locus_tag="VE968_06045"
     CDS             5385..5666
                     /locus_tag="VE968_06045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51421.1"
                     /translation="MKIRVGKRMLVLGAAGLVGAAGFATVAVAQQSQQTPKGWNYQLK
                     DGKRVPKSGNRVTNPDGSWREEARQGNCVTIKEMTKNGEYKETRQCNPS"
     gene            complement(5676..6101)
                     /locus_tag="VE968_06050"
     CDS             complement(5676..6101)
                     /locus_tag="VE968_06050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51422.1"
                     /translation="MRRKLLIASLASLALAGCNNDQGQTNQPKIKVRGSEQERLHELD
                     AFNLAIALKHAIYDAGYTCKRVTDGGYIGEYKNLDMWMAHCVYDNAPPRDWAIFTGPD
                     GSAQIRDCKDIPGTGLPDCKVKQRPKGSFTEPVTQSAKK"
     gene            complement(6117..7283)
                     /gene="purT"
                     /locus_tag="VE968_06055"
     CDS             complement(6117..7283)
                     /gene="purT"
                     /locus_tag="VE968_06055"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HZU51423.1"
                     /translation="MYSATLMLLGSGELGREFVIAAKRLGCRIIACDRYANAPAMQMS
                     DACEVFPMLDGKALRKAVEKHKPDVIVPEIEAIDTEALAALEKEGWHVAPSAKAVQLT
                     MNRDGIRDFATREVGLFTSKYRFAETREDAIAAAGEVGLPCVIKPVMSSSGKGQTTVR
                     KAEEVGQAWDYAVANMRGDRPRVIVEEFVKFDSEITLLTVATKDGVIFCAPVGHRQEL
                     GDYRESWQPAGIPQEALQSARFQARKIVEALGGYGIFGVEFFVRGDQAIFSELSPRPH
                     DTGMVTLISQFPNQFELHLRAILELPIPSIEPIGPSASAVILASREADEFSYDGVAEA
                     LALGSPRRPVDLRIFAKPKTLKNRRMGIALARSDNAEDAVERAKAAASRVKIRY"
BASE COUNT         1416 a         2345 c         2360 g         1415 t
ORIGIN      
        1 ggccgggtgg acagacgtgg gggccatgtt acagcccaag agccgcccag cggtgtcttc
       61 tgcccgccaa catacggacg aacgtcagtg tcatgcatgc cgaagtagat cgagtgggga
      121 tctttatcgg tggcgttcaa aaggctggga cgaccagcct ccactcctat ttcatggagc
      181 atcccgctct tctcgcaccg cgcaagaagg aaacgcactt tttcgacaac gagacagtcg
      241 attggtcgaa ccgggattac cggaccgacc tccataacaa gttttatcca aaggctcgtt
      301 taggcgcgat cgcctatgac gcgactccga tcaccatctt ctggccaccg gcagtcgaac
      361 ggattctcgc ctacaatccc gatgcgaaat tcattttcct gttccgcgac ccgatcgagc
      421 gcgcgttctc ccactggcgg atggaaattg aacggaacgc ggagagcctc cctttttcgg
      481 cggcgatccg agaagggcgt gagcggttga atgggttgcc tgaactgcac tgggattacc
      541 gcgtgtacac gtatgtcgaa cgcggctttt atggccacca ggtggagaga ctcctcaggc
      601 aagtaccacg cgatcagctc ctgttcctgt cttctaccga acttgcaacg aagccttcgg
      661 ccgtgctcgc aacaatcgcc gacttcttat cgatcgagcc atttcccgaa acgtcgccgc
      721 ggagggtttt cgtgggttcc gcatcaaccg aattagcgga aggcgatgtt gagtatctga
      781 gcacaatctt cagcgaagat acgcagcgtt tcgcggcttt gactgacctc gacgtgtcgg
      841 attggctcgt gtgcaagccc aggacggccg cgcttggacg ataagcgaac caatgttctg
      901 atgatcgtct gtgacgatct caatgcttgg atcggagccc tggggcgcca tcctcaggta
      961 aagacgccag ccattgatgc attggcggca cgcggatcct tgttcacacg agcctattgc
     1021 aacgcgccct actgtaactc gagtcgcatc agcgtcttca cgggctgttt gccttccacg
     1081 accggagtgt acgaacagga ggcgttttgg acggatcccg gccgacgcaa gacttacgtc
     1141 gaagctttga gatcggccgg ctattacgca ttcggcgcgg ggaaagtctt ccatggaaaa
     1201 tacagataca gtgttgcaac ccgcgaccag ctgacaagcg cgcaatggag cgacacgcag
     1261 caccgcgctt cgatctggga tagtttcaca cccctgagcg ctgagccgtt accgaccaat
     1321 cgcccactga acgggctggt cgacttcagc gatttttcgg aggtcccgtc gaaatattac
     1381 ctcttcgact ggggagcatt tccgaacgac ctcgagcagc aattgccgga cagcattacc
     1441 gcaaatgtcg tcgccgaatt cctgcgctcg ccgccggacc aacccttctt ttgtgcggcc
     1501 ggaatctaca agccgcatct gccttggcac gtgccgaagc gattttttga cctctatcct
     1561 ctgtcgaaaa tcgttctccc gctagtcaaa gacgatgatc ttgatgatgt accggaaata
     1621 gcgcgtgagt gggcgttgga cccgccagac cacgaactcg tcacaagaaa caaccagtgg
     1681 cggcatgccg tgcaagggta tctcgcggcg atttcatatt gcgattccgt aattgggcga
     1741 attatcgacg ccctcgacgc atcaccggcg cgcgacaata caatcgtcgc cctctggggc
     1801 gacaacggct ttcaccttgg agagaaactc cactggcgca agttcgcgct ttgggaagag
     1861 gccactcgga ttccactcat catcgttccg ccccgtggga cgaaatgcgc tccgcgtatc
     1921 gctgagccag taagcctgat cgacctgttt ccaactatca cagacctgct cggtctttcg
     1981 caaggagagc ccgtcgacgg atcttcactg gcggcactga tggggctgtc aaccgagcga
     2041 gctttgccga gggcggcgat ctcaacctgg ggcagaggca atcattccgt gcgtcatggc
     2101 cagtggcgct acacccggta ttccgacgga agctcggaac tctatgatca ttcagccgac
     2161 ccctacgagt ggacgaacct ggcgaaagag cgccgcttcg ccggcaggat gaggaagctt
     2221 gccgctttcc ttccacagga tgggtagcgg atcatctctg gcgctgacgc gggccctccg
     2281 ctagcgccat tccatgagca aagtcccagt cctcgtcacc ggcggcgccg ggtatatcgg
     2341 aagccatgcg atgctcgcct tgaaggactc ggggtggagc gtcgcggtga tcgacgacct
     2401 ttcgaccggc gtgcgcgacg cggtccctga ggacgtgccg ttctacgaag gaaatatcgc
     2461 cgatcgcgcg ctcgtggagc gcatcttcgc cgagcagggg accgaggcga tcatgcactt
     2521 cgcggggtcc atcgttgtgc cggaatcggt cgagaagccg ctgtcctatt acggcaacaa
     2581 tacggtggcg acgcatgcgc tgatcggaac ggcggtagac gccggcatca agcacatcct
     2641 cttttcatcg accgcggcgg tctatggcgc gccggagaag gtgccggtag ccgaggacga
     2701 tccgaaggag ccgatcaacc catatggctc ctcgaagctg atgaccgagt ggatgctgcg
     2761 cgatgcctcc gccgcgcatc cgttcaacta tggcgcgctg cgctatttca acgtcgcggg
     2821 cgcggatccg cagcgccgga cgggtcagca gggcaagggc tctacccatc tcatcaaggt
     2881 cgcggttgag actgccgtcg gccttcgcga gcaggtcgcg gtgtacggca tcgattatgc
     2941 aacacccgat gggacctgca tccgcgatta tatccacgtg agcgatctcg cgtcggcgca
     3001 cgttgcggcg ctcgaatggc tgattgcgca cccgaatgag aatctggtgg tcaactgcgg
     3061 gtacgggcgc ggcctctccg tgctcgaggt gctcgacgcc gtcgaccgtg caaacggatc
     3121 cccgatcaaa cgcgtcatgc aggggcggcg cgcgggcgat ccgccgatgc tcgtctcggc
     3181 caaccggcgc atcctcgaca cgctcgattg gcggccgcgg ttcaacgaca tcgacaagat
     3241 cgtcggcgat gcgctcgcct gggagcggac gctgctcgag cgccggagca aggccgctta
     3301 gccgattctt taccgcgccg gcgtaccccg tccacgatgc tgcgcgccta tctcgccatc
     3361 gtcatcgcga tcggcattgc cgcgtcgctc gctagtcacg tgctgccttc gaaagtctca
     3421 ggacccgagc cacggcagca ggtcgaaatc gtgcaaccgt cgcctggaag cgacgatgcg
     3481 caggccgaac agaatgtggc aagcctcgac ggcgcagtcg tcctccagcg cagtgagaac
     3541 gggcatttct acgccgacgt cgcggtcaac ggggttccgg tccgcatgct ggtggacacc
     3601 ggcgcatcgg gcattgcctt gtcccaggag gacgcgcgcg ccgccggcat cgcgacttcg
     3661 atcgggatga acgacgtcgt cggcgagggc gccggcggaa gcgttcacgg cgatttcgtg
     3721 acgatcgacc ggatcgcact cggtccgaag agcgtcgaac agatgcctgc gctcgtgctc
     3781 aacggcggtg agcagtcgct ccttgggcag gcctttctga agcagttcgc ctcggtcgag
     3841 atccacggcg atacgatgac gctgcgctga gtcccggcct ggcgtcggcg ctgggcataa
     3901 gtggggcgct gggcttgccg aggtgccgcg caatcgcgtc gacacagcta gaataatcgg
     3961 tcctctggcg ggccatgtcg gcgtaatcgg gcgcccctcg cagcttatat ccgctgtcgg
     4021 cgagacgctt ggcgacgctc ctcagcgcat tctgatccgt cttctcggcg acacgctcga
     4081 cgccggagat gagcgcgagc tccttcgcca ttcgctcccc ctcctccttg aggagcacgg
     4141 cgggcccgta gagtgaatca tcgtcgatca agaactctgc gaagaggctg agatcgagca
     4201 gggcgcccaa tgcggcggcc cagcctgcgc ccgtcgacgt cgactggaaa tagatcaacg
     4261 aggggtgagc cgaatggctt tgacgcaccg tcgcgcacca attgcggcct tcttcgagaa
     4321 cttctgggag cccgcgcttg tggcggatgg cggcatagcg ttcgagcaag gtcagcgccg
     4381 acggcggctg cccggccgaa gtattgagct tgatgatgcc gatgtcccgg cgcgtgatgc
     4441 tgttctgcac ttcgagcaag taagtgacgg ccatggtcat cactgcgagg ccgcagaagc
     4501 cgcttgcaag gatgatccag cggccggcgc cgagcacgtt ctcgcccgta aggccgatgg
     4561 tcacgattgc gctgccgacc atgaaaacgg cttccggcag gctttcgaga tgcggctcga
     4621 agtgggtgcg catggcatag gccatcagcc cgaacgcaag cgcgaggagg ctcatccaga
     4681 tgacgaagga gctgaccagc accaagggag cgaaggcgtg cgagatgccg cgattgcggc
     4741 cccgcaggcg cttccagatc accagcagca cgaggccgac cctcttcgtg acgcggagcg
     4801 aggcgcggct tccgcccggg acgacgaccg tgtcgaacac gtcgcgtaaa gtcagccacg
     4861 caaggatcgc gcccgcgatg aagaagatga cgtcccaggc catgcgggtt caacggtggc
     4921 ggggcggact tgggtccgga gctgcgccgc tgctccttga cttgacggac actgctctct
     4981 aggtgagccg ccggtccacg gacctttccg acaaccttac gaacgagaca cgagcaggcg
     5041 cccggccatg aagattcgca attccctgaa gtcgttgaag tcgcgccacc gggactgccg
     5101 agtcatccgt cgccgtggcc gcacttacgt gatcaacaag acgaaccgtc ggttcaaggc
     5161 gcggcagggc tgaagtccgg cggacttctg accggagacg tccgccaagg ctgagctctg
     5221 ggcgagctct gacgaccagc tcgccaaggt taatcccctc tcggcggctt gagatttgcc
     5281 gtcggaatcc cgacattagt cctcgaaaga gccgcggctt gagccgtttc ggtcggggaa
     5341 cgaccgtcag tggcggttaa gcccggctgc gctaagagga acttatgaag attcgcgtgg
     5401 gcaagaggat gctggtgctg ggcgccgcgg ggctcgtcgg tgcggcaggg ttcgccaccg
     5461 tcgcagtcgc ccagcaaagt cagcagacgc cgaaaggctg gaactatcag ctgaaggacg
     5521 gcaagcgcgt tcccaagagc ggcaaccggg tcaccaatcc ggacggcagc tggcgcgagg
     5581 aagcgcggca gggcaattgc gtcaccatca aggaaatgac gaagaacggc gagtataagg
     5641 aaactcgcca gtgcaacccg tcctagcggc tgaacctact tcttcgctga ctgggtcacc
     5701 ggttcggtga acgagccctt gggccgctgc ttgaccttgc agtccggcag gcccgtaccg
     5761 gggatgtcct tgcaatcacg gatctgcgcg ctcccatcgg gaccggtgaa gatcgcccag
     5821 tcgcgcggcg gcgcgttgtc atagacgcag tgcgccatcc acatgtcgag gttcttgtac
     5881 tcgccgatat agccgccgtc ggtcacgcgc ttgcacgtgt atccggcgtc gtagatcgca
     5941 tgcttgagcg cgatcgcgag gttgaatgcg tcgagctcgt gcagccgctc ctgctccgac
     6001 ccgcggacct tgatcttcgg ctggttggtc tggccctggt cgttgttgca gcccgcgagg
     6061 gcaaggcttg ctaaagacgc gatcagcaat ttgcggcgca tggcttctcc tcgaagctaa
     6121 taacgaatct tgacgcgaga ggctgcggcc ttggcgcgtt cgaccgcatc ctcggcattg
     6181 tcgctgcgcg cgagcgcgat tcccatgcgg cggttcttga gtgtcttggg cttggcgaag
     6241 atgcgcaggt ccaccggacg gcgcggcgat cccaaggcga gggcttcggc gaccccatcg
     6301 tacgagaatt cgtccgcttc ccgcgacgcc aggatcaccg ccgaagccga ggggccgatg
     6361 ggctcgatcg acggaatcgg aagctcgagg attgcgcgca ggtggagctc gaattgattg
     6421 gggaactggc tgatcagggt caccatgccc gtgtcgtgcg gccggggcga aagctcggag
     6481 aagatcgcct ggtcgccacg cacgaagaac tcgactccga aaatcccgta accgccgagc
     6541 gcctcgacga tcttgcgcgc ctggaagcgc gcggactgca gcgcctcctg cggaatgcct
     6601 gccggctgcc agctttcccg atagtcgccg agctcctgcc gatgcccgac cggcgcacag
     6661 aagatcacgc cgtccttggt cgcgacggtc agaagcgtga tctcgctgtc gaacttgacg
     6721 aattcctcga cgatcacgcg cggccggtcg ccccgcatgt tggcgacggc atagtcccag
     6781 gcctgaccga cctcctcggc tttcctgacc gtcgtttggc ccttgcccga gctcgacatc
     6841 accggcttga tcacgcaggg aaggccgacc tctccggctg cggctatggc gtcctcgcgg
     6901 gtttcggcga agcggtattt cgaagtgaag agccccactt cgcgcgtggc gaagtcgcga
     6961 attccgtcgc ggttcatggt cagctgcacc gcctttgccg acggcgcgac atgccagcct
     7021 tccttctcga gcgcggcgag cgcttcggtg tcgatcgcct caatttcggg gacgatcacg
     7081 tccggcttgt gcttttcgac cgccttgcgg agcgccttgc cgtccagcat cgggaagacc
     7141 tcgcaagcgt ccgacatctg catcgcgggc gcgttggcat agcggtcgca tgcgatgatg
     7201 cggcagccga gacgcttggc ggcgatgacg aattcgcggc ccagctcgcc cgagcccagc
     7261 agcatcaatg tggcactgta catggcggtc gcttaccgtg ttcctgcgaa ggcaggaacc
     7321 caggactgga cccctgtctc agccggatta caacaatggg catgcgacac ctgcttttgc
     7381 tgagcgcgag tgctttcctg ctggccgcgg ccccgccgca gaagctgctc acgccgaacg
     7441 acatcgtcgc cgcggctccg gcaagcgcct ggcgcacgat ccctgcggac gacctcctcg
     7501 tcatggacct cgcgcgcggc ggacgggttg tcgtgc
//
LOCUS       DASRBJ010000218         8941 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_377141,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000218 DASRBJ010000000
VERSION     DASRBJ010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8941
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377141"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2039
                     /gene="prsK"
                     /locus_tag="VE968_06060"
     CDS             <1..2039
                     /gene="prsK"
                     /locus_tag="VE968_06060"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="XrtA/PEP-CTERM system histidine kinase PrsK"
                     /protein_id="HZU51424.1"
                     /translation="SHALAAACFAALVIWRIGDAARQPGQRLLAASFALTACWAWLSG
                     VAPAGAVAGLAESARNLLWVSLLYSVSSASAEDRQHGLKMVYAAVAGVIGLQLIGAAL
                     ELLSPSAAIAETALVLRITTAAGALVLVHNIYGQASPASRSHIRFAMIGLALIWTYDL
                     NLYTSFYLGSAGAKGLMEWRGVVVALAAPLFALASRKEGAWRVRLSRAATFQSLSLLA
                     ICAYFALMVILATALRGTGVDWSSSLMVGVLAIMTVAAMVIIPSARARAWVKVKVAKH
                     LFEHRYDYRTEWLRFTETLGRAGPDAPPLGDRIVKAFADIIDAPGGMLLVGDGGRGLS
                     IASASEWPGSRPPGDAFDNAAEFWSGLEANGRVIEFEAVRSGWGSAEDRALLIPKWLI
                     EETTAWAGIPLLHEQRLVGLVVLAAPEFRRQLDWEDFDLLRTAGHQAASSLAEALGQE
                     ALSEAQRFEEFNRRFAFILHDIKNLVSQLSLVARNAERHSDNPEFRADMVATLQSSVG
                     KMNDLLARLAPHSQSRVERVEAQPLRPILTAAIAAKRGERDVRLLGDTSVEALVDAAA
                     LEQAISHLVQNALDASSGAPVSIRVTSSNDTVSIAITDKGTGMDGDFIRNRLFQPFAS
                     TKAGGFGIGAFEARSLVTAMGGRIGVDSRLGQGTTFTIHLPAAVRPSEAIRKRA"
     gene            2036..3403
                     /gene="prsR"
                     /locus_tag="VE968_06065"
     CDS             2036..3403
                     /gene="prsR"
                     /locus_tag="VE968_06065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017184353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045893 - positive regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM-box response regulator transcription
                     factor"
                     /protein_id="HZU51425.1"
                     /translation="MSDSSASKVLLVVEDDEGLQRQLKWAYEGYEVICAGDRASAIEA
                     LRAHEPAVVTLDLGLPPDPDGTDEGFATLSEILRLKPDTKIIVATGHGARESATKAVA
                     MGAYDFYKKPVDIDELGFIVARAFHLHGIEEENRRLESGTGATLLGSIITAAPEMQKV
                     AKTIERVASANVSVMLLGGSGTGKELLARGVHEASGRKGEFIAINCAAIPENLLEAEL
                     FGYERGAFTGAVKSNVGKIELAQGGTLFLDEVGDIPLPLQVKLLRFLQERVIERIGGR
                     QPIAVDTRIVCATHQDLDAMTADGRFREDLYYRLAEIVVKIPSLAERSGDSVLLARHF
                     VNRFGRELNPGIQSLSADAIDAIDAYSWPGNVRELENRIKRAVIMADGKSVTAADLDL
                     PTQRLADESPLPINLRAAREVADRKAIRQAMSRSDNNISGAAKLLGISRPTLYDLLKQ
                     YRLSA"
     gene            3469..4179
                     /locus_tag="VE968_06070"
     CDS             3469..4179
                     /locus_tag="VE968_06070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004209114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HZU51426.1"
                     /translation="MANAAGIEKLTERQKEILRLLLAGHDAKSAARELGISVHTINEH
                     LRDVRRKLGASSSREAARILGATELIPPNSLGSQQLRVADAAAERFRTSRAIRNKAVA
                     FGGILLVILALSAFAMSVIHPASAVPTDVPPRVNSTQPRNGSQIHPGPFTLMVTFDRP
                     MLDRNFSFVEVSPETYPSCEQPPRLSADARSFSMHCTAIAGHSYEIWFNRPPYMNFKS
                     LTGTPAEPYELRFSTSSR"
     gene            complement(4240..4617)
                     /locus_tag="VE968_06075"
     CDS             complement(4240..4617)
                     /locus_tag="VE968_06075"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HZU51427.1"
                     /translation="MNFGKRIDGIGGRRRAHRKPVLAPASAITLDEGKLVVLTNLSRH
                     GARIRGFALNRGKDLWLRTGSIDTLATVVWRRHDLCGICFDEPLTDRQVRQMQRATAI
                     YLHRFLTPEEEFAAEDWVSGFAR"
     gene            5484..7307
                     /locus_tag="VE968_06080"
     CDS             5484..7307
                     /locus_tag="VE968_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HZU51428.1"
                     /translation="MDRRSFLAATATAALIPLTEAPALAVVAAPSADGDAKFNALCEA
                     IFEDRVRHSPTFASSLGLDKGPNAELKSELDTQPVPVIRRENLQRSEHAMAQLRAINP
                     ATLSEANKLNREVILYSLQTSTVAPTRWDISSAQRPYPITQQGGAYFEIPDFLNTSHT
                     IENRADAEAYLSRLGQFGTVLDNDSGEQRAQAARGFLAPAWSIDLALGQMRKLRDVPA
                     DQSSMVQSLVKRSAAKGIAGDWQRRATEIVARSVYPALDRQIALMQELKPTSRPGDGA
                     QRLPDGDAIYAEALHEATTTNFTPAEVHQMGLDQVAQISTELDQILKANGYSQGSVGE
                     RLNALGKSPSQAWPDTESARADVLVYLNGRIKDMYTRLPRAFATLPNQPLEIRRVPPE
                     IQDGAANGYYRPATLDGSRPAIYFINLKDLGDWPKYTLPTLCYHEGVPGHHLQLSISQ
                     ESKDIPKLRKIGFYSAYSEGWALYAEQLADELGVYANDPFGRAGFLQSFLFRAARLVV
                     DTGIHSKGWSREQATDYLARTTGYARPRSQREVERYCTQLGQACSYKVGHTAWVRARE
                     EAKRTLGPKFDIKRFHEVLREGSMPLSILERRIRERTAAVA"
     gene            complement(7304..>8941)
                     /locus_tag="VE968_06085"
     CDS             complement(7304..>8941)
                     /locus_tag="VE968_06085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HZU51429.1"
                     /translation="LIDPDEGKRTIVPGTHVVLLEQDPRMDGHETLEDWVLHGSGAPQ
                     PHEAAAIADQLGIDLSRETRTASGGERRRAAITRALAMNPDVLLLDEPTNHLDLGAIE
                     WLEDWLKRFTGAFIVISHDRTFLNRLTRSCIWLDRGELRRAEIGFGGFEAWTERVYEE
                     EARAAEKLDAKLKLELHWLQRGVTARRRRNQGRLAKLHEMRAQRAAMIGPSGSAKLAL
                     AKDDVRSKTVIEADQVTKSYGDRPIIRDFSLRIQRGDRIGIVGPNGAGKTTLLKLLTG
                     EIQPDTGKVVQAKTLSGIVIDQQRKLMEPSKRVKDVLANGGDWIDVRGSKKHIKGYLK
                     EFLFDPSLTEAPVGSLSGGERSRLLLAREFARAANLLVLDEPTNDLDLETLDLLQEVI
                     ADYDGTVLIVSHDRDFLDRTVTITLGLDGSGRVDVVAGGYEDWVRKRFEMHRSIQKAT
                     TKVRDTGKASEQAAPPARKLSYKDQRDYDRLPGEIERLEAEIASDEAALSDPDLYARD
                     PARFAKLSEQIARNRAEVEAAEFRWLEVAELAEALAS"
BASE COUNT         1734 a         2792 c         2659 g         1756 t
ORIGIN      
        1 ggagccacgc gcttgcggcg gcatgctttg ccgcgctcgt gatatggcga attggcgatg
       61 ccgcacgcca accgggccag cggctgctgg ccgcttcgtt cgcgctcacc gcttgttggg
      121 catggctatc gggagtggcg ccggctggcg cggtcgcggg tctcgccgag agcgctcgca
      181 accttctttg ggtgagcctc ctctacagcg tatcaagtgc gagcgccgag gatcggcagc
      241 atggcctgaa gatggtctat gccgcggtcg ccggggtcat tggtcttcag ctcatcggag
      301 cagcccttga actgttgagc cccagcgctg caattgccga gacggctctc gtgctccgga
      361 tcacgaccgc ggcgggtgcc ctcgtcctcg ttcacaacat ctacgggcag gcatcgccgg
      421 caagccgctc ccacattcgc ttcgcgatga tcggtctcgc tctcatctgg acctacgatc
      481 tcaatcttta cacgagcttt tatcttggtt cggctggagc caaggggctg atggaatggc
      541 gcggcgtcgt ggtagcactc gccgctcccc tgtttgcgct tgccagccgg aaggaaggcg
      601 cgtggcgcgt gcgcctttcg cgcgcagcaa ctttccagtc gctctcgctg ctggcgatct
      661 gcgcttattt cgcgctgatg gtgatccttg caacggcgct ccggggtacc ggcgtcgact
      721 ggtcatcctc gctgatggtc ggcgtactcg caatcatgac cgttgccgca atggtgatca
      781 ttccgagcgc ccgcgcgcgc gcctgggtca aggtcaaggt tgcaaagcac ctcttcgaac
      841 accgctacga ttatcgaacg gaatggctga ggtttaccga gaccctcggt cgcgcgggac
      901 ccgacgcgcc gccgcttggc gaccgcatcg tcaaagcatt cgcggacatc atcgatgcac
      961 cagggggaat gctgctcgtg ggggatgggg gccgcggtct ttcgatcgcg agcgcaagcg
     1021 agtggcccgg cagccgtcct cctggcgatg cgttcgataa tgctgccgaa ttttggagcg
     1081 gtctcgaggc aaatggccgc gttatcgagt tcgaagcagt ccgctcgggg tggggatccg
     1141 cggaagatcg cgcgcttctc atacccaagt ggctgatcga agagacgacc gcctgggccg
     1201 gcattccgct tctccatgag cagcggctgg tcggtctcgt ggttctcgcc gcacccgaat
     1261 ttcggcggca gctcgactgg gaagactttg atctcctgcg gacggccggg caccaggcgg
     1321 cgagctcgct tgccgaagcg cttggccagg aggcgcttag cgaagcgcag cggttcgagg
     1381 agttcaatcg gcgcttcgcc ttcatcctgc acgacatcaa gaatctcgtc agtcagttgt
     1441 cgctggttgc acgcaacgcc gagcgccatt ccgacaatcc cgagtttcgc gccgacatgg
     1501 tcgcgacact ccagtcttcg gtcggcaaga tgaacgacct tcttgcccgc cttgcgccgc
     1561 attcacagtc gcgggtcgag cgcgtcgaag cgcagccgct acgaccaatc cttaccgccg
     1621 caattgccgc aaagcgcggt gaacgcgacg taaggctgct tggtgacacg agcgtcgaag
     1681 cgctcgtcga cgccgctgcc cttgagcagg caatcagcca ccttgttcag aacgcgctcg
     1741 atgcaagcag cggcgcgccc gtaagcattc gagttaccag ttcaaacgat acggtcagca
     1801 ttgcgatcac ggacaaggga accggcatgg acggtgactt cattcgcaat cggctgtttc
     1861 aaccctttgc ttcgaccaag gccggtggct ttggaattgg tgcgttcgaa gcacgctcac
     1921 tggtcactgc aatgggcggc cgcatcggcg tcgacagccg ccttggacaa ggcaccacct
     1981 ttaccatcca tctgcccgcg gcagtgcgcc cgagcgaagc tatcaggaag agagcatgag
     2041 cgattccagc gcatccaaag tcctcctcgt cgtcgaggac gatgagggcc tgcagcgaca
     2101 gctgaaatgg gcctacgagg gttatgaagt catctgcgcg ggcgaccggg cgagcgccat
     2161 cgaggcactc cgtgcccatg aacctgccgt tgtcactctt gaccttggcc ttccgcccga
     2221 tcccgatggc accgacgagg gtttcgcgac gctaagcgag atcctccgac tgaagccgga
     2281 cacgaaaatc atcgtcgcga cgggtcacgg cgcgcgggaa agcgcgacca aggcggtcgc
     2341 catgggagcc tatgactttt acaagaagcc agtcgacatc gacgagcttg gcttcatcgt
     2401 cgcccgcgcc ttccacctcc atggcataga ggaagaaaac cggcgtcttg agagcggcac
     2461 tggtgcaaca ttgctcggat caatcatcac ggccgcgccg gaaatgcaga aggttgcaaa
     2521 gacgattgag cgcgtcgctt cggcaaacgt ttccgtgatg ctgcttggcg gaagcggcac
     2581 tggcaaggag ctgctcgccc gcggggttca cgaagcaagc ggccgcaagg gcgagttcat
     2641 tgccatcaat tgcgcggcaa tccccgagaa cctccttgaa gcggaacttt tcggttacga
     2701 acgcggcgcc ttcacgggcg ccgtcaagtc aaacgtcggc aagattgaac ttgcccaggg
     2761 cggaacactc ttcctcgacg aagtcggcga tattccgctc ccgctccagg tgaagctgct
     2821 gcgcttcctc caggagcgcg tgattgagcg cattggcggg cggcagccga tcgccgtcga
     2881 cacgaggatc gtttgcgcaa cgcaccagga ccttgacgca atgaccgccg acggaaggtt
     2941 ccgcgaagac ctctattatc gcctcgccga aatcgtcgtc aaaatcccat cactcgcgga
     3001 gcgctcgggc gatagtgtcc ttctcgcccg gcacttcgtc aatcgcttcg gacgcgagct
     3061 caaccccggc atccagtcac tcagcgccga tgccatcgac gcgatcgatg cttattcgtg
     3121 gcccggcaac gttcgcgagc ttgagaaccg catcaagcgg gcagtgatca tggccgacgg
     3181 aaaaagcgtg accgccgctg atctcgatct cccaacgcaa cgcctcgcgg atgaaagccc
     3241 acttccaatc aacctgcgtg ctgctcgcga agttgctgac cgcaaggcca ttcgccaggc
     3301 gatgagccgg tcggacaaca atatttccgg cgccgcaaag cttctcggga tcagtcggcc
     3361 cacgctctac gatctcctaa aacaatatcg cttgagcgcg tgagtgggcg acgcccgcct
     3421 catcaattgg gttgcggcgc ttcccgtgtt cgctgataca tcagtggaat ggccaatgcc
     3481 gccggcatag agaagctcac ggagcggcag aaggaaatac taaggctgct tctagctggc
     3541 cacgatgcaa aatccgctgc tcgggagctc ggcatttcgg ttcacacgat caatgagcac
     3601 ctgcgtgacg tgcgccgaaa acttggcgcc tcgagtagcc gtgaagcagc acgcatcctc
     3661 ggtgcaacag aattgatacc cccaaatagt ttggggtctc aacaattgag ggtagccgac
     3721 gcggccgccg agcggtttcg aacgagccgc gcgatccgca acaaggccgt cgcgttcgga
     3781 ggaatattgc ttgtgatcct tgcacttagc gcgttcgcca tgtcggtcat ccatccagcg
     3841 tcagccgtgc caaccgatgt tccaccaagg gttaattcga cgcagcctcg gaacggatcc
     3901 caaattcatc cgggcccgtt tacgttgatg gttactttcg acaggccgat gctcgatcga
     3961 aatttttcat tcgtagaagt ctcgcccgag acctatccga gctgcgaaca accgccgcgc
     4021 ctgtccgccg acgcgcgatc gttcagcatg cactgcaccg caattgccgg tcatagttat
     4081 gaaatctggt tcaaccgtcc gccttacatg aatttcaagt cactcaccgg gacaccggct
     4141 gaaccttatg agctgagatt tagcacaagc tcgcgatgac caaaggcgag cgcgactggc
     4201 gacaagagcg ctcatcgcga ttccgtcacg ctcgcgggtt cagcgcgcga accccgacac
     4261 ccaatcttcg gctgcgaact cttcttccgg tgtaaggaac cgatgaaggt aaattgccgt
     4321 cgcgcgctgc atctgccgta cctgtcgatc cgtgagcggt tcgtcgaagc agatgccgca
     4381 aaggtcatgc cgcctccaaa cgaccgtggc aagcgtgtcg atcgatcccg tgcgaagcca
     4441 gaggtccttt ccccgattga gtgcgaagcc tcgaattcgt gcgccgtgtc gcgacaggtt
     4501 ggtgagaaca acgagcttgc cctcgtccag cgtgattgcg cttgcgggtg caagaaccgg
     4561 tttgcggtgt gctcggcgtc gacctccgat gccatcaatc cgcttgccga aattcatctc
     4621 tgatcttcca ggctgcgcgc ttgcggcgaa ctttgcctca tagtcgaagg gccaaggtcg
     4681 atagctctgg gatttcgatc atcgaacgaa cgcatactcg aacctcggca gatggaggtg
     4741 ccccatgggt cggcttagca gaggcgaatt gatcagaagc taatcgcgat ggtaaattcg
     4801 tacaccaaga ggaagccaaa cagttgtgct tgccacttac gggcggtgat taggcgcgtt
     4861 caccaacaag ccagccagga gcaagtcgcc cgcgtaacgg acttgtactc gaggagctcg
     4921 tcaaccgtgc gcgaactcgt ttctgttgac gatcagccgg aatgaaccgg cagaagccta
     4981 attgccgcgc gaacagggat tggcttgtcg cttgtcgcgc gcggcgatgt tcatctggcg
     5041 cgcggtgacg gcgacggcca tggtcgagtt catggtcgcg gcatgaggct gtgggagcgg
     5101 tttcgagctg gaggtcgttc ccacctgccg cgctgtcatc gcgaccgcca tcgtcgagtt
     5161 catctcggtc ctccccgtgt ggacttaaga aatataaagc aaatccaaca cgataccaag
     5221 acccagattt gatcgtctcg cgctgacaca cgagcgccac cgctggtcgg gctcgcgcgc
     5281 ttaggccaga gactcgacag gaaagactgt ccgtctctag gccgatttct tgcgttttca
     5341 acggtcgatt gggttcgatc cttgtgacct aaccggccgt aaatgaggca aagtagccct
     5401 tcggtcttat cgcgccatgt tgcagccgat gattgcggcg ctaacgtgtt gccgttcgaa
     5461 cctgcttttt gacgggataa tcaatggatc gccgatcgtt tcttgctgct actgccactg
     5521 ccgcgctcat cccactaacc gaagcacccg cccttgccgt ggtcgcggct ccgagcgctg
     5581 acggtgacgc gaagttcaat gccctctgtg aagcgatttt cgaggaccgg gtacgtcact
     5641 cgccgacatt tgcctcgtct cttgggctcg acaagggtcc caacgccgag ctcaagtccg
     5701 aactcgacac gcagccggtg ccggtcattc gacgcgagaa cctccagcga agcgaacatg
     5761 cgatggcgca attgcgcgcc atcaatccgg cgacgctttc agaagcgaac aagctcaatc
     5821 gcgaagtcat cctttattcg ctgcagacat ccaccgtcgc gcccaccagg tgggacattt
     5881 cgagcgcaca gcggccatat ccaattaccc agcagggcgg cgcctatttc gaaatcccgg
     5941 acttcctaaa caccagccac acgatcgaga accgcgccga cgccgaagcc tatctctcgc
     6001 gcctcggtca gttcggaacc gtgctcgaca acgactcggg cgagcagcgc gcccaggctg
     6061 cgcgaggttt cctcgcaccc gcctggtcga ttgatcttgc ccttggccag atgcgcaagc
     6121 ttcgcgatgt tccggcggac caaagttcga tggtgcagtc gctcgtcaag cgatcggcgg
     6181 caaaaggaat tgccggcgat tggcagcgcc gcgcaaccga gatcgtcgca aggtccgtct
     6241 acccggcgct cgatcgccag attgcgctca tgcaagagct gaagcccaca agcaggcccg
     6301 gcgacggcgc tcaaaggctc ccggacggtg atgcaatcta tgccgaggca ctgcacgaag
     6361 cgacgacgac gaacttcaca ccggccgaag tccaccagat gggtctcgac caggtcgcac
     6421 agatcagcac cgagctcgac cagatcctga aggccaacgg ctattcacaa ggaagcgtcg
     6481 gtgagcggtt gaacgcgctt ggcaaatcgc catcgcaagc atggccggat accgagagcg
     6541 ctcgtgccga tgtccttgtc tatctcaacg gtcgcatcaa ggacatgtac acgcggcttc
     6601 cacgcgcctt tgcaaccttg ccgaatcagc ccctcgagat ccgccgagtc ccgccggaaa
     6661 tccaggatgg cgccgcgaat ggctattatc gaccggcaac actcgatggc tcgcgtccgg
     6721 caatctattt catcaacctc aaggaccttg gtgattggcc caagtacacg cttccgacgc
     6781 tctgctatca cgagggcgtc cccgggcatc acctgcagct tagcatttcg caggaatcga
     6841 aggacattcc caaactccgc aagatcggct tctattcagc ctatagcgaa ggatgggcgc
     6901 tctacgccga gcagctcgcc gatgaactgg gcgtctatgc gaacgatcca tttggacggg
     6961 cgggcttcct ccagtcgttt ctcttccggg ctgctcggct tgtcgtcgac accggcatcc
     7021 actccaaggg ttggagccgc gaacaggcga ccgactatct tgcgcgaacg accggctatg
     7081 cccgcccacg ctcgcagcgc gaggttgaac gatattgcac gcagcttggc caggcctgca
     7141 gctacaaggt ggggcacacc gcgtgggtcc gcgcacgcga ggaagccaaa aggacgcttg
     7201 gtcccaagtt cgacatcaag cgctttcacg aagtgcttcg cgaaggctca atgccgctat
     7261 ccattctcga acggcgcatc cgcgagcgca cggccgccgt cgcctaggag gcgagcgcct
     7321 ccgccaattc cgcgacctcg agccagcgga actctgccgc ctcgacttcg gctcggttcc
     7381 gcgcaatttg ctcgctgagc ttggcgaagc gagcggggtc gcgcgcataa aggtcgggat
     7441 cggacaaggc ggcttcgtcg ctcgcgatct ccgcctcgag ccgttcaatc tcgcccggaa
     7501 ggcgatcata gtcgcgctgg tccttgtagg agagcttcct tgccggaggc gcagcttgct
     7561 cgctggcctt gccagtgtcg cgaaccttcg tggtggcttt ctggatcgag cggtgcatct
     7621 cgaaccgctt ccgcacccag tcttcatacc cgccggcaac cacgtcgacc cgcccggagc
     7681 catcgagacc cagcgtgatg gtcacggttc gatcgagaaa atcgcgatca tggctgacga
     7741 tgagcacggt gccatcatag tcggcaatta cttcctggag gaggtcgagt gtttcaaggt
     7801 ccagatcatt ggttggttcg tcgagcacaa ggaggttcgc agctcgcgca aactcgcgcg
     7861 caagcagcag tcgcgaccgc tcgccgcccg aaagcgagcc gacgggagct tcggtgagcg
     7921 aaggatcaaa gaggaattcc ttcaaatagc ccttgatgtg cttcttcgaa ccccgaacgt
     7981 cgatccagtc gccgccattc gcgagcacgt ccttgacgcg ctttgagggt tccatgagct
     8041 ttcgctgctg gtcgatgacg attccggaaa gcgtttttgc ctggactacc tttccggtgt
     8101 cgggctggat ttcgccggtc agcagcttca agagcgtcgt cttcccagcg ccattgggac
     8161 caacgattcc gatccggtcg ccgcgctgaa tgcgaagcga gaaatcgcgg atgatgggcc
     8221 ggtcgccata ggatttggtc acctggtcgg cttcgatgac ggttttcgac cgaacatcat
     8281 ccttggcgag ggcaagtttc gccgatcccg agggtccaat cattgcggcg cgctgggcac
     8341 gcatctcgtg gagctttgca agcctcccct gattgcgccg ccgccgagcg gttacgccgc
     8401 gctgcagcca gtggagttcg agcttgagct tggcatcgag cttctcggcg gcgcgtgctt
     8461 cttcttcata gacgcgctcg gtccacgctt cgaagccacc gaagccgatc tcggcgcggc
     8521 ggagctcgcc gcggtcgagc cagatgcagc tgcgtgtcag tcgattgagg aaggttcgat
     8581 catggctgat gacgatgaat gcgcccgtga aacgcttcag ccagtcctcg agccattcga
     8641 tcgcgcccaa gtcgagatgg ttggtgggct catcaaggag tagcacatcg gggttcatcg
     8701 cgagcgctcg cgtaatcgcc gcgcggcgac gctccccgcc gcttgccgta cgggtctcgc
     8761 gggaaaggtc gatgccgagc tggtccgcaa tcgccgccgc ctcgtgcggc tgcggcgcac
     8821 ccgatccatg gagcacccaa tcctcgagcg tctcgtgacc gtccatgcgg gggtcctgct
     8881 cgagaaggac gacgtgggtt cccggaacga tcgttcgctt tccctcgtcc gggtcgatca
     8941 g
//
LOCUS       DASRBJ010000219         3309 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_631488,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000219 DASRBJ010000000
VERSION     DASRBJ010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3309
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_631488"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..517)
                     /locus_tag="VE968_06090"
     CDS             complement(<1..517)
                     /locus_tag="VE968_06090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016746667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM domain-containing protein"
                     /protein_id="HZU51430.1"
                     /translation="MSDHLAPIPWFDVLIIFALILMNAVLALSEMAIVSSREARLKAM
                     AKSGSAGSQCALELAADPGRFLSTVQSGITLIAIFAGAFSGASLGEPVAQRLEILGLP
                     KSTAHTVGFGLVIVLTTYFSLVIGEIVPKQIALRSPEPLAALVARPMRWLSKIVAPFV
                     WVLDRSSALIFK"
     gene            637..1299
                     /locus_tag="VE968_06095"
     CDS             637..1299
                     /locus_tag="VE968_06095"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HZU51431.1"
                     /translation="MNLKSRITTFAVGFALIAVAGCQTAPPPPVGVPAAFTALGTSAP
                     YLRGDVIGGQRARAAKMRAAKIRPLSPAEVGPYMADLAAELRRQTAGIGLDVLDLGGS
                     IVVRIPATFTFDEGSASIKPTTDATLLEIARTVKTRNRTFVDVLAHTDTTGTIQGNQL
                     LSDHRAAAVASYLAAHGVARARLASRGLGESAPLYIPETSEEQRAANRRIEIRLVPYR
                     AF"
     gene            complement(1412..1864)
                     /locus_tag="VE968_06100"
     CDS             complement(1412..1864)
                     /locus_tag="VE968_06100"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0052717 - tRNA-specific adenosine-34
                     deaminase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HZU51432.1"
                     /translation="MSFPLPLPMRRALDLAAAAGAAGEVPVGAVVTRGNEIIADARNA
                     MRGSTDPTAHAEIEAMRAAAKNLGTSRLDDCTLWVTLEPCAMCAAAAAIARLKAVHFG
                     AEDPKGGGIVNGPRMFAQPTIHHRPTVLAGIGEEEAGTLLRRFFEERR"
     gene            complement(1897..2175)
                     /locus_tag="VE968_06105"
     CDS             complement(1897..2175)
                     /locus_tag="VE968_06105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51433.1"
                     /translation="MRALLLIVILVIVVAIAAVMTGFVNITNIRGAPPELTATRNSVT
                     AKGGQPPAFDVEAGTVKVGSKQTTVNVPTLEVQKPTRKPANATTNNVM"
     gene            2368..2664
                     /gene="rpmB"
                     /locus_tag="VE968_06110"
     CDS             2368..2664
                     /gene="rpmB"
                     /locus_tag="VE968_06110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013934187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HZU51434.1"
                     /translation="MSRVCELTGKGRQVGHNVSHANNKTKRTFLPNLQNVTLISDALG
                     TSIKLRVSTHGLRSVEHVGGLDNWLLKTSDDKLSPKVRKLKREIVKKASDKAAA"
     gene            complement(2888..>3309)
                     /locus_tag="VE968_06115"
     CDS             complement(2888..>3309)
                     /locus_tag="VE968_06115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cobaltochelatase subunit CobT"
                     /protein_id="HZU51435.1"
                     /translation="LNDLRHIIYKRADEPYRHSRRNLGLMMREGLLKENIDGEALLWA
                     HNRLIARAEERRILMVISDGAPVDDSTASANGGSYLERHLRQVIEWIETRSSVELIAI
                     GIGHDVTRYYSKAVTIMDADQLAGAMVEQLAQLFQMK"
BASE COUNT          676 a          985 c          974 g          674 t
ORIGIN      
        1 acttgaagat gagtgcgctc gaacgatcga ggacccacac aaagggcgcg acgatcttgg
       61 acagccaacg catcggtcgg gcgacaagcg ccgcgagagg ttcgggcgag cgaagcgcaa
      121 tctgcttcgg gacgatctcc ccgatcacaa gcgagaaata ggtcgtgagc acgattacaa
      181 gcccgaagcc caccgtatga gcggttgatt tcggcaatcc aagaatttcg agccgctgtg
      241 caacgggttc tccgagcgaa gcaccagaga aggcgcccgc aaagatggcg atgagcgtaa
      301 tcccgctttg aacagtcgaa aggaaccgac ccggatcagc ggcaagttca agcgcgcatt
      361 gcgatcccgc gctgccactc ttcgccattg ccttgaggcg agcctcacgt gaggagacaa
      421 tcgccatttc gctcaatgcc agaaccgcgt tcatcaagat gagcgcgaag atgatgagga
      481 catcaaacca ggggatggga gctaaatggt cgctcatggg cggcggccgc aatgtaacct
      541 tctaataccg agcttcacaa gcttctgctc tattccagtc gcggaaccat cgatatcagg
      601 accggtttca ccggcgtaag agggaagcgc gctcgaatga acctgaaatc acgtatcacg
      661 acgtttgccg ttggcttcgc gctcattgcg gtcgccgggt gtcagaccgc gcctccgccg
      721 ccagtcggcg tgccggcagc attcacggct cttggcacga gcgctcctta tctccgggga
      781 gatgtcatcg gcgggcaacg cgctcgcgca gccaagatgc gtgcggccaa gatccggcct
      841 ctcagtccag cggaagtcgg tccctacatg gccgatcttg ccgcagagct tcgccggcaa
      901 acagcgggta tcgggcttga cgtgcttgat cttggtggaa gtatcgtcgt gcgcattccg
      961 gcgaccttta ccttcgatga agggagcgcc tcgatcaagc cgaccactga tgcaactctt
     1021 cttgagattg ctcgaacggt gaaaacgcgc aaccggacct tcgttgatgt acttgcacac
     1081 accgacacca cgggaactat ccaaggtaac cagctgcttt cggatcaccg ggcggccgct
     1141 gtcgcatcct atctagccgc acacggtgtt gcgagggcgc gacttgcctc gcgaggactc
     1201 ggcgagagcg caccactcta cattccagaa acgagcgagg aacaacgggc agcaaaccga
     1261 cggattgaaa tccgcctcgt tccctatcga gccttttgaa cagctgagta gcgcaacacg
     1321 agcagccgat ctccacgagg cggcaacgca cgaccgctgc cgggtctcgc ttgcgcagga
     1381 cctcgccggt tcaaagtcga agtcgttgag cctagcgacg ctcttcgaag aatcgcctca
     1441 ggagtgttcc ggcttcctcc tcgccgatgc cggccaagac ggtggggcga tgatggatcg
     1501 tgggctgggc gaacattcga ggaccattca ctattccgcc gcccttggga tcctccgctc
     1561 caaaatggac ggccttcagg cgcgcgattg ctgctgcggc agcgcacatg gcgcagggtt
     1621 caagcgtcac ccaaagcgta cagtcatcga gtcgcgacgt accgagattc ttggcggcgg
     1681 cgcgcatcgc ttcgatctcg gcatgcgccg tggggtcggt agagccgcgc atcgcgtttc
     1741 gcgcatcggc aatgatctcg tttcctcgag tgacaaccgc gcccaccggc acttcgccgg
     1801 ccgcacccgc ggctgctgca aggtcgagcg ctcggcgcat tggcagaggg agaggaaagc
     1861 tcatcgggcc gcggctagcg cagggcgatc ctcaagtcac atcacgttgt tggttgttgc
     1921 gttcgccggc ttgcgtgttg gtttttgcac ctcgagcgtt ggtacgttca ccgtcgtttg
     1981 cttgcttccg accttgacgg ttccagcttc gacatcgaac gcgggtggtt gtcctccttt
     2041 ggcggtgacg ctgttgcgcg ttgcggtaag ttcgggcggt gcgccccgaa tattggttat
     2101 gttgacgaaa ccggtcatca ccgcggcgat cgcgacgaca attacaagaa tgacgattag
     2161 gagcagtgca cgcatctctt catccggaac gcgcgaagcg ctttctttac ctgctgttcg
     2221 acaactgccg ttaaacgcaa atggagtggg gcggttgctc accaatgttc attcggcccc
     2281 gtcaacgttg acgagtggag ctcaacccgc taacgggcgg cgctcttcgg gcctaagggt
     2341 ccgcacacga aaatcaggat actagtcatg tcgcgggttt gcgagctgac cggcaaaggc
     2401 cggcaggtgg gacacaatgt ttcccatgcc aataacaaga cgaagcgcac gtttctgccc
     2461 aatttgcaga atgtcacgct catctcggat gcgctcggca ccagcatcaa gctgcgcgta
     2521 tcgacgcatg gacttcgctc ggtcgagcat gtcggcggcc tcgataactg gcttttgaag
     2581 acgagtgacg acaagctcag ccccaaggtt cgcaagctca aacgcgagat cgtcaagaag
     2641 gcgagcgaca aggccgctgc gtaagtcagc taacatactg acttttcgat atttttcctg
     2701 aacggcagct gcaagctgcg ttcagggttc attgcccgcg aatcaggcat aagtgcttgc
     2761 atcggcgggg ttttcccctt ttccccgtct cgcctggcga caggcaatat ccctcgcgtc
     2821 gcgtaacgag ggggccccgg tgcggcaaca aatcgcgccg gggccaattt tcgggggcca
     2881 attttgctta tttcatttgg aacaattggg cgagttgctc gaccattgcg ccggcaagtt
     2941 ggtcggcatc catgatcgtg accgccttgc tgtagtaacg cgttacatcg tgcccgatcc
     3001 cgattgcgat tagctcaacg ctcgatcgcg tctcgatcca ctcaatgacc tgccgcaaat
     3061 ggcgttcaag atagcttccg ccatttgcgg atgcggtcga atcgtcgact ggtgcgccat
     3121 cggagatcac catcaggatg cgacgttcct cggcccgagc gatcagtcga ttgtgcgccc
     3181 atagcagcgc ctcgccatcg atattctcct tgagcaagcc ttcgcgcatc atcagaccca
     3241 ggttccgccg cgagtgtcgg tagggttcgt ccgcgcgctt gtagatgatg tgccgaaggt
     3301 cattcagcc
//
LOCUS       DASRBJ010000220         3960 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_486705,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000220 DASRBJ010000000
VERSION     DASRBJ010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3960
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_486705"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            81..845
                     /locus_tag="VE968_06120"
     CDS             81..845
                     /locus_tag="VE968_06120"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HZU51436.1"
                     /translation="MPPNDGTALASLVGFPRSGTTLLDTFLLGHPRTQVLEEIPLISA
                     VEGVLGDMRDLPDRSPAELKRARDAYLAQLAGHVEPGFSGLVIDKMPLNMLAAPYLFS
                     VFPDAPFIFAQRHPCDAVLGCFTQSFAPNAGMACFLDIHTAAQFYDAAMRMWTRSREA
                     LSLKVHTVVYEELVADPESALRPLIDFLALEWREELLDHRATAKARSGISTPSYNQVT
                     QPLSRAASGRWKRYAKHLEPVLPILLPWAERLGYRD"
     gene            complement(842..1261)
                     /gene="mce"
                     /locus_tag="VE968_06125"
     CDS             complement(842..1261)
                     /gene="mce"
                     /locus_tag="VE968_06125"
                     /EC_number="5.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007685838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA epimerase"
                     /protein_id="HZU51437.1"
                     /translation="MKLGRLNHVGVATPSIEQSLELYRAMFGAEPHGPAFDLPAQGVR
                     VCFVDTPNSQIELIEPLGETSPIVKFLEKNPLGGQHHVCFEVPDIHAAKAEFESKGAR
                     VLGEPRIGAHGSLVFFVHPKDMGGVLTEIMETPKAAH"
     gene            complement(1399..1884)
                     /locus_tag="VE968_06130"
     CDS             complement(1399..1884)
                     /locus_tag="VE968_06130"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HZU51438.1"
                     /translation="MQFSFGVADMSTYTAMILWKRDPNTDFTKGQYSRAHEWAFDGGV
                     TVPASPSPHIVPAPWSDAARVDPEEAFVASLSSCHMLFFVDFARRAGFVVDEYVDEAE
                     GVLEKRSDGKMAMTRVTLRPRVTWSGDEPDEPAIADLHHRAHDACFIANSVTTEVTVQ
                     H"
     gene            complement(1859..2122)
                     /locus_tag="VE968_06135"
     CDS             complement(1859..2122)
                     /locus_tag="VE968_06135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51439.1"
                     /translation="MSVVLYWAAYLPFIVGIVGQIIWRGHFLQWGLTAWPFCRFLAWV
                     LAIPDAHRFGRKRQRIVIANALLWLVIAMAIGLGVNAVLIWGR"
     gene            complement(2128..3660)
                     /locus_tag="VE968_06140"
     CDS             complement(2128..3660)
                     /locus_tag="VE968_06140"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010214961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HZU51440.1"
                     /translation="MATTIEELERRREAARMGGDAKRIEAQHAKGRLTARERLSVLLD
                     PGSFEEYDMFVEHNATDFGMDEQKIPGDGVVTGSGTINGRLVYVFAQDFTVFGGSLSE
                     RHAQKICKIMDMAMKVGAPVIGLNDSGGARIQEGVASLAGYAEVFQRNVLASGVIPQI
                     SLIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVVKTVTNEVVTQEELGGAVTHT
                     TKSGVADVAFENDIDALLATREFFDFLPLSNRHEDPVRPCEDPVDRVEESLDTLVPPS
                     ATTPYDMHELIRKVADEGDFFELQPAHAANIIVGFCRIEGRTVGVVANQPMVLAGVLD
                     INSSKKAARFVRFCDAFDIPILTFVDVPGFLPGVGQEHHGIIKHGAKLLFAYAEATVP
                     KITVITRKAYGGAYDVMASKHLRGDLNYAWPTAEIAVMGAKGAVEIIFRKDADDPAKI
                     AEKTREYEERFANPFVAASKGFIDEVIMPHSTRRRVAMGLRKLRNKQLENPWKKHDNI
                     PL"
BASE COUNT          705 a         1290 c         1217 g          748 t
ORIGIN      
        1 tgcgcggtca gcgccacctc gaattcatcc gcgaactgag cgatgcgatc acgcctgaat
       61 gggccgcgcg cctgccgact ttgccaccga acgatggaac ggcactggcg tcgctcgtcg
      121 ggtttccccg ctccggcacc actttgctcg ataccttcct ccttgggcac ccgcgcacgc
      181 aggtgctcga ggaaatcccg ctgatcagcg cggtcgaggg cgtcctcggc gacatgcgcg
      241 acctcccgga ccgatcccca gcagagctga aacgcgcgcg tgacgcctat ctggctcaac
      301 ttgccggtca cgtggagccg ggcttttccg ggttggtgat cgacaagatg ccgctcaaca
      361 tgctcgcggc gccatacctg ttcagcgtct ttcccgatgc gccgttcatc tttgcccagc
      421 ggcacccgtg cgacgcggtg ctgggctgct tcacgcaaag cttcgcgccg aacgcgggaa
      481 tggcctgctt tctcgacatc cacactgccg cgcaatttta cgacgccgcg atgcgcatgt
      541 ggacgcgcag ccgcgaagcc ctgtcgctga aggtccatac ggtggtttac gaggaactgg
      601 tcgccgaccc agagagcgcc cttcgcccgc tgatcgactt cctcgccctc gaatggcgcg
      661 aggagctgct cgatcaccgc gcgacggcca aggcgcgaag cggaatcagc acaccgagct
      721 acaaccaggt cactcagccg ctgtctcggg cggcaagcgg gcgatggaaa cgctatgcca
      781 agcatctcga gcccgtgctg ccgatcctgc tgccctgggc ggagcggctc ggctatcggg
      841 attagtgcgc cgccttcggc gtctccatga tctcggtcag gacgccgccc atgtccttcg
      901 gatgcacaaa gaagacgagg gagccatgcg cgccgatgcg gggctcgccc agcacgcgtg
      961 cgcccttgga ctcgaactcc gcttttgccg cgtgaatgtc agggacttcg aagcagacgt
     1021 ggtgctggcc gcccagcggg ttcttctcga ggaacttcac gatcggcgag gtctcgccga
     1081 ggggctcgat cagctcgatc tgtgagttgg gcgtgtcgac gaagcagacg cgcacgcctt
     1141 gcgcgggaag gtcgaacgcc ggcccgtgcg gttccgcgcc gaacatggcg cggtagagtt
     1201 cgaggctctg ctcgattgag ggcgtcgcca cgccgacatg gttgaggcgg ccgagtttca
     1261 tagtcttctc catgccgcgt cagcggccat tttaatcacg caaaggcgca aaggcgcaaa
     1321 gacaaggtca atcgcaagcc cctttgcgcc ttagcgcctt agcgtgaacc cccttttctt
     1381 tcttgccgct tcgcggggtt agtgctggac cgtcacctcg gtcgtgacgc tgttggcgat
     1441 gaagcaggca tcatgcgcgc ggtggtggag gtcggcgatg gccggctcgt ccggttcgtc
     1501 gccgctccag gtgacgcgcg ggcggagtgt gactcgcgtc atcgccatct ttccgtcgga
     1561 gcgcttctcg agcacccctt ccgcctcgtc gacatattca tcgaccacga accccgctcg
     1621 ccgcgcgaag tcgacgaaga acagcatgtg gcaggacgac agcgaagcga cgaacgcctc
     1681 ttcgggatcg acgcgcgctg cgtccgacca gggcgcggga acgatgtgcg ggctcggact
     1741 agcgggcacc gtcacgccgc catcgaacgc ccattcgtgc gcgcggctgt actggccctt
     1801 agtgaagtcc gtgttcgggt cgcgcttcca gaggatcatg gcggtgtagg tgctcatgtc
     1861 agcgacccca aatgagaact gcatttacac ccaagccgat cgccattgcg atgaccaacc
     1921 acaataaggc attcgcaatc acgatccgct gacgcttcct cccgaaccga tgcgcatcgg
     1981 gaatcgccag aacccacgcc agaaagcggc aaaacggcca agccgtaagg ccccactgaa
     2041 ggaaatgtcc tcgccagatg atctgaccaa cgattccgac aataaacgga aggtaggccg
     2101 cccaatagag gacgacgctc atccgcctca gagtgggata ttgtcgtgct tcttccacgg
     2161 attttcgagc tgcttgttcc tcagcttcct tagccccatc gctacgcggc gccgggtcga
     2221 gtgcggcatg atcacctcgt cgatgaagcc cttgctcgcg gcgacgaagg ggttggcgaa
     2281 gcgctcttca tattcgcgcg tcttctccgc gatcttcgcc gggtcatcgg cgtccttgcg
     2341 gaagatgatt tcgaccgcac ccttcgcgcc catcaccgcg atctcggcgg tcggccaggc
     2401 atagttcaaa tcgccgcgaa ggtgcttgga ggccatgacg tcataagccc cgccataggc
     2461 cttgcgggta atcaccgtga tcttcggcac cgtcgcctcg gcataagcga acagcaattt
     2521 cgcgccatgc ttgatgatgc cgtggtgctc ctgccccacg ccggggagga agccgggcac
     2581 gtcgacgaag gtcaggatcg ggatatcgaa cgcgtcgcag aagcgcacga accgggcggc
     2641 cttcttcgag gagttgatgt cgaggactcc agccagcacc atcggctggt tggccaccac
     2701 gccgactgtc cgcccctcga tccggcaaaa gccgacgatg atgttggcag catgcgcggg
     2761 ctggagctcg aagaagtcgc cctcgtcggc gaccttccgg atcagctcgt gcatgtcgta
     2821 tggggtcgtc gcgctcggcg ggaccagagt gtcgaggctc tcctcgaccc gatcgaccgg
     2881 gtcctcgcac ggccggaccg ggtcctcgtg ccggttcgac agcggcagga agtcgaagaa
     2941 ctcgcgggtg gcgagaagcg cgtcgatgtc gttctcgaac gcgacgtccg cgacgcccga
     3001 cttggtggtg tgggtgaccg ctccgcccag ctcctcctgc gtcacgacct cattggtgac
     3061 ggtcttcacc acatcgggac cggtgacgaa catgtacgag ctgtccttca ccatgaagat
     3121 gaagtcggtc atcgccggcg aatagaccgc gccgcccgcg cacgggccca tgatgaggct
     3181 gatctgcggg atgacgcccg aggcgagcac gttgcgttgg aacacttcgg catagccggc
     3241 aagtgacgcg acgccttcct ggatgcgcgc gccgccgctg tcgttgaggc cgatgaccgg
     3301 cgccccgacc ttcattgcca tgtccatgat cttgcagatc ttctgcgcgt gacgctcgga
     3361 gagcgagccg ccgaagacgg tgaagtcctg cgcgaagacg tagaccagcc gcccgttgat
     3421 cgttccggag ccggtgacca cgccgtcccc ggggatcttt tgctcgtcca tcccgaagtc
     3481 ggtcgcattg tgctcgacaa acatgtcata ttcttcgaag ctgccgggat cgagcagcac
     3541 ggaaaggcgc tcgcgggcgg tcagccggcc cttggcgtgc tgcgcttcga tccgctttgc
     3601 gtcgccgccc atgcgggcag cttcgcggcg ccgctccagt tcttcgatcg tcgttgccaa
     3661 gcgcctctct cctcgggcct gctccttcca tgcgtacttc gtcgggtcaa tcgggcggat
     3721 tgccgtttgc tgcaccgcag catgcggatt ttagcgctaa cattaacgca ggttacggaa
     3781 cctcgacgcc tcaagggccg ttcaacattc aagggcaaac aaaccaatgg aggtaaaaaa
     3841 gaaaatgctg actcgcgccg gggtgcctgt cgtatctgaa gccgagccct cggcacctga
     3901 tccagagccc acaaccctca tttgcttttc gcacctgcgg tggaatttcg tcttccagcg
//
LOCUS       DASRBJ010000221         3294 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_229851,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000221 DASRBJ010000000
VERSION     DASRBJ010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3294
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229851"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..803
                     /locus_tag="VE968_06145"
     CDS             <1..803
                     /locus_tag="VE968_06145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HZU51441.1"
                     /translation="AEIMGGLYGDGVIALKGAFSSQFADLLHDDMLSLFREAQQIEGG
                     ALPRGPQRWYVETQPERIRGFAQIVSHPWFVAVCQSVLTQDYRIVEVGFDIPFPGAED
                     QPWHRDFKAPDATLKGRRLNSLAFNLTAVDTKPEHGPFEIALGTQWDAIPDAKDGMFP
                     DRSLWERYISRAVQKLPQRGDISARSALTIHRGTANRSREPRPVLVVGVDAPDATNAN
                     HHDLQVTRGYFESLPPLVRDHLACRVTDELEPIIQHHVIEGLLEADYG"
     gene            complement(960..1034)
                     /locus_tag="VE968_06150"
     tRNA            complement(960..1034)
                     /locus_tag="VE968_06150"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1000..1002),aa:Thr,seq:ggt)
     gene            1057..1263
                     /locus_tag="VE968_06155"
     CDS             1057..1263
                     /locus_tag="VE968_06155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008996567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51442.1"
                     /translation="MAAPFARVNPAHGRRMLAGARGEVHVTSMTTDDKQREERLAAAL
                     RENLRRRKAQARAQEEQQGSGKNS"
     gene            complement(1297..1425)
                     /locus_tag="VE968_06160"
     CDS             complement(1297..1425)
                     /locus_tag="VE968_06160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51443.1"
                     /translation="MIDALQLALALLLLGAVIWLGDAIAGGIDAALGEKKMRDRDA"
     gene            complement(1496..1912)
                     /locus_tag="VE968_06165"
     CDS             complement(1496..1912)
                     /locus_tag="VE968_06165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007012889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HZU51444.1"
                     /translation="MTRGKSLYDYPVHLGRAGTATAEPKFTGFDWYQAYGGRNAADGP
                     ESRLVSLFRFDESWTSWEMHPSGEEIVCVVEGEMTLHQELADGTELSYELGPGEYAIN
                     PRGAWHTADANGPVVALFITAGEGTTNRARELLPLT"
     gene            complement(1909..2283)
                     /locus_tag="VE968_06170"
     CDS             complement(1909..2283)
                     /locus_tag="VE968_06170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011415296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HZU51445.1"
                     /translation="MIGYVTLGTNNREKSAAFYDAICRELGVGRMMENDQFIAWGNPG
                     GGAGIGITRPFDGKPATVGNGVMVALEAKDKAQVDRLHATALANGGSDEGAPGDRGDG
                     FYAAYFRDPDGNKLNAFVMGGE"
     gene            complement(2332..>3294)
                     /locus_tag="VE968_06175"
     CDS             complement(2332..>3294)
                     /locus_tag="VE968_06175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HZU51446.1"
                     /translation="LEKVGAKILPQRDPTILPKAIKNEAEIRGQKAAQIRDGAAIARF
                     LHWVDEEAPKGDVDELRASDHLEALRRENGELRDLSFDSISGAGPNGAIVHYRSSEKT
                     NRKLEKGTLYLIDSGGQYVDGTTDITRTVAIGEPTEEMRDRFTRVLKGHIAIATAVFP
                     KGTRGSQLDSFARRPLWEAGLDYAHGTGHGVGSFLSVHEGPQRISPVGSAQSGGDEPL
                     QPGMILSNEPGYYKTGEYGIRIENLVLVVPRQIDGAEKEMLGFETLTFAPIDRLLVDA
                     NMLEAEELIWLNCYHAHVLARIGPTLAGADLEWLREACAPILTE"
BASE COUNT          650 a         1021 c          961 g          662 t
ORIGIN      
        1 ctgccgagat catgggtggc ctttatggag acggggtcat cgctctcaag ggcgcgttca
       61 gcagccagtt cgccgatctg ctccacgacg acatgctgag cttgtttcgg gaagcacagc
      121 agatcgaggg cggagcgctc ccgcgggggc cacagcgctg gtatgtcgaa actcagcccg
      181 aacgcatccg tggattcgcc cagatcgtga gccacccctg gttcgtcgcg gtctgtcagt
      241 cggtgctgac gcaggactac aggatcgtgg aggtcgggtt cgatattccg ttccccggtg
      301 ccgaggatca gccttggcac cgtgacttca aggcgcccga tgcgacgcta aagggacggc
      361 ggctcaacag cctcgccttc aacctcacgg cggtggacac caagcccgaa catggcccgt
      421 tcgagattgc gctcggtacg cagtgggatg cgatccccga cgccaaagac ggaatgttcc
      481 cggacaggag cttatgggag cgctacattt cgcgagcggt gcagaagttg ccgcagcgcg
      541 gcgatatttc agcgcgttcg gcactgacca tccaccgcgg cacggcaaat cgctcgcgcg
      601 agcctcgacc ggtcctcgtc gtgggcgttg acgcgccaga tgcaacgaac gccaaccacc
      661 atgatctcca ggtcacgcgg ggctatttcg agagcctccc accgctcgtt cgcgatcatc
      721 ttgcctgccg cgtcacggac gaactcgaac cgatcattca gcatcatgtg atcgaagggc
      781 tgctcgaggc cgattacggc tgacgcgctc gataatccat tctctgtcgt gaggcacggt
      841 catcgcaggc gcgattcgcg gacagaacat gcgcccttcg cgaagataaa tgtatcgtac
      901 gggagctgtc tcacaggcca catccttgcg ttttcgatcc agtgacgtgg cgagagaaat
      961 ggtgctgccg gtgaggattg aactcacgac ctcagcctta ccaaggatgc gctctaccac
     1021 tgagctacgg cagcacttgt ctgggagggc gcggctatgg ccgcgccctt cgcgcgcgtc
     1081 aacccggcgc acggacgcag aatgcttgcg ggcgcgcgtg gcgaagttca tgtgacctcg
     1141 atgacgacgg atgacaagca acgcgaagag cgcctcgcgg ccgcgctgcg cgaaaacctg
     1201 aggcgtcgca aggcgcaagc gcgcgctcag gaagagcagc aaggaagtgg caaaaacagt
     1261 tagactgcga ttgggtagaa agccggaaac ttaagcctaa gcgtctcgat cacgcatctt
     1321 cttttcgcca agggcagcat cgattccgcc ggcgatagca tcgcccagcc atatgactgc
     1381 tccgagaagc agaagcgcga gcgctagctg aagtgcatca atcacgaatc gactccgtga
     1441 ttttgcttta tatgcaaagt attaaacgcg caattaatgg cagatgaccg agctgtcacg
     1501 tgagcggcag caactcgcgc gcgcggttcg tcgtcccctc gcctgcagta atgaacaagg
     1561 cgacgacggg accgttcgcg tcagcagtat gccacgcgcc gcgcgggttg atcgcatatt
     1621 ctcccggccc cagttcgtag ctaagctcgg ttccgtcagc gagttcctgg tgcagcgtca
     1681 tctcgccttc aacaacgcag actatctctt cgcctgaagg gtgcatctcc cagctcgtcc
     1741 agctttcgtc gaagcgaaac aggctgacca accggctctc cggcccatca gcagcgttgc
     1801 gcccaccata agcctggtac cagtcgaacc cggtgaactt gggttcggct gttgccgtac
     1861 cggctcgccc gagatggacc ggatagtcat agagcgactt gcccctcgtc attcgccacc
     1921 catgacgaac gcgttgagct tgttgccatc gggatcgcga aaataggcgg cataaaagcc
     1981 gtccccgcga tcgcccggcg caccctcatc ggaaccgccg ttcgctagcg ctgttgcgtg
     2041 cagtcgatcg acctgcgcct tgtctttcgc ttcgagcgcg accatcactc cgttaccaac
     2101 ggtcgcgggc ttgccatcaa atggcctcgt gattcctatg cccgcgccgc cacccgggtt
     2161 gccccaggca atgaactgat cattttccat catgcgcccg acgccaagct cgcggcatat
     2221 cgcgtcataa aatgcggcgg acttctcgcg gttgttggtg ccaagcgtca cgtagccgat
     2281 catgtcctgt actccttcgc gagtcggatc gagaacatta caagaacgcc ttcattcggt
     2341 caaaatcggc gcgcaagctt cgcggagcca ttcgaggtcg gcaccagcga gggtgggacc
     2401 gatgcgcgca agtacgtgcg cgtgatagca gttcagccag atgagctctt cggcctcgag
     2461 catattggcg tcgacgagaa gccggtcgat cggcgcaaag gtgagcgttt cgaaaccgag
     2521 catttctttc tctgcgccgt cgatttgacg cggcacgacg agcaccaggt tctcgatccg
     2581 gatcccatat tcgccggtct tgtaatagcc gggttcattc gaaaggatca tgcccggctg
     2641 cagcggctca tcgcctccgc tctgcgcgct gcccaccggc gatatccgtt ggggaccttc
     2701 gtggactgaa agaaagcttc ccactccatg gccagtgccg tgcgcataat cgagtccagc
     2761 ttcccacagc ggacggcgtg caaagctatc gagctgactg ccacgcgttc ccttcgggaa
     2821 gactgccgtt gcaatggcga tgtggccctt gagaacgcgc gtaaagcgat cacgcatctc
     2881 ctcggttggc tcgccaatcg cgacagtgcg cgttatgtcg gttgttccat cgacatactg
     2941 accacctgaa tcgatgaggt acagcgtccc cttctcaagc ttcctgttgg tcttctcgct
     3001 tgagcggtag tgaacaatgg cgccattcgg tccggcgccg gaaatgctgt cgaacgagag
     3061 atcacgcagt tcgccatttt cgcgccgcaa tgcttccaag tgatcggacg cgcgcagttc
     3121 gtcgacgtcg cccttcggtg cctcctcgtc gacccaatgc aggaaccttg caatcgctgc
     3181 accatcgcga atctgtgcgg ccttctggcc gcggatttcc gcttcgttct tgatggcctt
     3241 gggaagaatc gtcggatcgc gctgtgggag tatcttggcg ccaaccttct caag
//
LOCUS       DASRBJ010000222         5833 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_631773,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000222 DASRBJ010000000
VERSION     DASRBJ010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5833
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_631773"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1654)
                     /locus_tag="VE968_06180"
     CDS             complement(<1..1654)
                     /locus_tag="VE968_06180"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020819285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing)"
                     /protein_id="HZU51447.1"
                     /translation="MATQPPIDDTTPPASGDNDIAPISIVEEMKTSYLDYAMSVIVSR
                     ALPDVRDGLKPVHRRILHACQEAGYVAGRPYRKSSRIVGDVMGKYHPHGDQAIYDALA
                     RMTQDWSMRVPLIDGQGNFGSVDPDPPAAMRYTEARLAKVANFLLGDIDKDTVDFQPN
                     YDASEREPQVLPARFPNLLVNGAGGIAVGMATNIPPHNLGEVLAACRAYIDDPTISSE
                     GLMEHVKAPDFPTGGLILGQSGVRSAYTTGRGSILQRSRYQIEEGRGDRRSIVLTEIP
                     YQVGKSGLVEKIAEAAKDKRIEGVSDIRDESNREGVRIVIDLKRDATPEVVLNQLWRH
                     TPAQSSFPANMLAIRGGRPETLTLRDIIESFVRFREEVITRRSKFELFKARERAHILL
                     GLVVAVTNLDEVVRLIRGSASPAEARQKLLDREWSGDQIRPYIRLVEAVEPQAAGETY
                     RLTEAQVRAILELRLHRLTALGRDEIGNELEGLAKSIGELLEILANRARLYEVMREEF
                     DAVEAEFATPRLTELAPAADGIQDEDLIEREDMVVTVTLGGYI"
     gene            1947..3176
                     /locus_tag="VE968_06185"
     CDS             1947..3176
                     /locus_tag="VE968_06185"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZU51448.1"
                     /translation="MKLVTTTAIALVVAISAAPAVAQNNGSQQQPAQAAQPKITPSKG
                     ALKAIVDLQATVNKNDFANVPAKVAAANAVATTKEDRYLIGELQLKAAIAAKDSGAET
                     SAINEIATSGYLDPAKSTELYVSLGSTLYNNKQYAEAQAAFQKAVALDPRNSEAASLL
                     GEALFAQGQKEQAAAAFQRAVQASTAAGQKPEESLLKRAVGVAYDANSPNAVELSREW
                     VAAYPGPDSWRNSIAIYRNLSHPDIEGTLDLLRLMQATGAMSQSEDYTLFARAAAEQN
                     NYNEAQAVLDAGIAANKVNPADPNVRDLVAGLKAKPKATAADLAAATKAAVNGTALLR
                     IGDRYYAMGDYAKAVELYRSAMGKPGVDAAVANLHIGMALARAGDKAGATTALNAVTG
                     PRAEIAKYWLTYVNQRA"
     gene            3344..4888
                     /locus_tag="VE968_06190"
     CDS             3344..4888
                     /locus_tag="VE968_06190"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HZU51449.1"
                     /translation="MRFDDRLLTVLNQPAEDRHDVAVRWRQLVDLVARSGASSASPMI
                     SQALEAIRTEAPRVAEPLRAAAARAVAALPVPLGLLEYFVTDRLAVSAPVLASASLDD
                     VQWQRLRALADEETRGFIEALHPETGGERGANLPAPQPPSQTEVTENTAYVPPSVHDV
                     VERIEERRRMRSIEPVSSSAPSTSELETSTLFRWECGPGGEIAWVDGVPRGALIGRSI
                     AKSIEGGGDHIDHDVVRAFNLRAPFRDRLVAIAAAGSASGEWKISGMPAFDPADGRFA
                     GYRGIAVRETSTSDAQRGSEAEAIPDVLADPASLRELVHEIKTPLNAIIGFAEIIEGQ
                     YLGPADRGYRSRAFEIVRQARLLLTAIDDLDFAAKAHSAGTRRDWVDLAALVDREAQS
                     LRDFAEQRRVNLQVIGVRFDVPAKVEPELANRLLFRLFGALADLAEPGEVVQLHLELT
                     NDRAFVVFSRPKSIRELSEAELFGSTSDGGLGRFMLRIARGLARIAGGNLISRQDTIA
                     FVFPRG"
     gene            4944..5015
                     /locus_tag="VE968_06195"
     tRNA            4944..5015
                     /locus_tag="VE968_06195"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4976..4978,aa:Ile,seq:cat)
     gene            5082..5158
                     /locus_tag="VE968_06200"
     tRNA            5082..5158
                     /locus_tag="VE968_06200"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5116..5118,aa:Pro,seq:tgg)
     gene            complement(5411..>5833)
                     /locus_tag="VE968_06205"
     CDS             complement(5411..>5833)
                     /locus_tag="VE968_06205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006951057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HZU51450.1"
                     /translation="LAKARASDACRLLMSVPGVGAITASTFAAAIEDPANFKNSRSVG
                     AWLGLTTRRYQSGEVDYDGHISRRGDAEVRSRLYEAAVVLLTRSGMECSLRTWALNLK
                     ERIGFKRAAVALARKLAVIMHAMLKNGSYFDRTAGAVA"
BASE COUNT         1116 a         1726 c         1813 g         1178 t
ORIGIN      
        1 tgatgtagcc gcctagagtg acggtcacga ccatgtcttc gcgctcgatg agatcctcgt
       61 cctggatccc atcggcggcc ggagcaagtt ccgtgagcct tggcgtcgca aattccgctt
      121 cgaccgcgtc aaattcttcg cgcatcacct cgtagaggcg cgctctgttc gcgaggatct
      181 cgaggagttc gccgatgctc ttcgcaagcc cttcaagctc attgccgatt tcatcacggc
      241 caagcgccgt cagtcggtgg agccgcagtt cgagaattgc tctcacctgg gcttccgtga
      301 gccgataggt ttcaccagca gcttgcggct caaccgcttc gacgagccgg atataggggc
      361 ggatctggtc acccgaccac tcgcgatcga gcagcttttg ccgtgcttct gcaggggatg
      421 ccgatccgcg gatcaagcgc accacttcgt cgaggttggt gactgcaacg acgaggccaa
      481 gcaggatatg ggcccgctca cgtgccttga aaagctcgaa cttcgagcgg cgagtgatga
      541 cttcctcgcg gaagcggacg aagctctcga tgatatcgcg aagggtgagc gtctcaggcc
      601 ggccgccgcg gatcgcaagc atgttggcgg gaaacgagga ctgggcgggg gtatggcgcc
      661 acagctggtt aagcacgact tcaggtgtcg catcgcgctt caagtcgatg acgatccgga
      721 cgccttcacg gttcgattcg tcgcgaatgt ccgagacgcc ttcgatgcgc ttgtcctttg
      781 cggcttcggc tattttttcg acaagcccgg acttgccgac ctggtacggg atctccgtaa
      841 ggacgatcga tcggcgatcg ccgcgacctt cctcgatctg atagcgcgag cgctggagaa
      901 tcgagcctcg accggttgtg taagcgctgc gcactccgga ttggccgagg atcaagccgc
      961 ccgtcggaaa gtcgggcgct ttcacatgct ccatcaagcc ttccgagctg atcgtcggat
     1021 catcgatgta ggcacggcac gccgcgagca cttcgccaag attatggggc ggaatgttgg
     1081 ttgccatgcc aacggcaatt ccgccggccc cgttcacaag gaggttgggg aagcgcgcgg
     1141 gcaggacttg cggctcgcgc tcggaggcat cgtaattggg ttggaagtcg accgtatctt
     1201 tgtcgatgtc gccgaggagg aagttcgcga cctttgcaag tctcgcctcg gtgtagcgca
     1261 ttgccgctgg cggatcggga tcgactgagc cgaaattccc ttgcccatcg atgagcggga
     1321 cacgcatcga ccagtcctgc gtcattcgtg cgagcgcgtc gtagatcgct tgatcaccgt
     1381 gcgggtgata tttacccatg acgtcgccga cgatgcggct ggatttgcga tatggccgcc
     1441 ccgctacata gccagcctcc tgacaagcgt gcaggatccg tcgatgaacc ggtttcaggc
     1501 catcgcgcac atccggcaga gcgcgactga cgatgacgct catcgcataa tcgaggtacg
     1561 acgtcttcat ctcctcgacg atggagatgg gagctatgtc attgtcgccg gaagctggcg
     1621 gggtcgtatc gtcgataggg ggctgagtgg ccaagaatgc gtcctagtct ttttgatatg
     1681 cagctggagg tgcggtgccg ctaaggcccg cgtcccccgt caggcctacg tagtgagttt
     1741 ttcgacgagc accagccttc gcgcgcgcgt gcgcgcgaaa tttggcatgt cttcttctct
     1801 tcaccgaaaa aacgtagcca aatcagtcag ttcaatgggc gttcagggca catctggcaa
     1861 agcgcttggc cttgccatat tcagggtcta atgcgccgcg gttattcgcg cgccgtgcgc
     1921 tcggccgcca caggagaaga aagccgatga agcttgtcac cactactgcg atcgcgcttg
     1981 ttgtcgccat ttcggcagct cccgcagtcg ctcaaaacaa tggatcgcaa cagcagccag
     2041 cccaagcggc gcagccgaag attaccccgt caaaaggggc gctgaaggcg attgtcgatc
     2101 tgcaggcgac ggtcaacaag aacgattttg caaatgtgcc cgcgaaggtc gcggcggcaa
     2161 acgccgtcgc aacgacgaag gaggatcgct acctcatcgg ggaactgcag ctgaaagcag
     2221 cgatagccgc gaaggacagc ggcgcagaaa catcggcaat caacgagatt gctacttcgg
     2281 gataccttga cccggcgaaa tcgaccgaac tgtatgtgag ccttggttca acgctttaca
     2341 acaacaagca atatgctgag gcgcaggcgg cgttccagaa ggctgtcgcg ctcgatccgc
     2401 gaaattccga ggcggcttcc ctgctcgggg aagcattgtt cgcgcagggg caaaaggagc
     2461 aggcggctgc ggctttccag cgcgccgtcc aggcgagcac cgcagccggt caaaaacccg
     2521 aggagagcct gctgaagcgt gccgttggcg ttgcctacga tgccaattcg cccaatgccg
     2581 tggagctctc gcgtgaatgg gtcgcggcct atcccggacc tgacagctgg cgaaactcga
     2641 tcgccattta tcgcaacctc agccaccccg atattgaggg caccctcgat ctgcttcgac
     2701 tgatgcaggc gactggggca atgagccaat cggaagacta tacccttttc gctcgagcag
     2761 cggccgagca gaataattat aacgaagccc aggcggtgct cgatgccgga attgctgcca
     2821 acaaggtaaa tcccgcggat ccgaacgtca gagatctcgt tgctggcctc aaggcgaagc
     2881 caaaggcaac cgccgccgac ctcgccgccg ccacgaaggc tgccgtcaac ggtaccgccc
     2941 tgctgcgcat tggtgatcgc tactatgcga tgggtgatta tgccaaagcg gtggaacttt
     3001 accgctcggc catgggcaag cccggcgtcg acgcagccgt ggcgaacctc cacatcggaa
     3061 tggcgctcgc gcgtgccggt gacaaggcgg gtgcgaccac ggcgcttaac gccgtgactg
     3121 gcccgcgcgc cgaaatcgcg aaatactggc tcacctatgt aaatcagcgc gcctgaccgc
     3181 gcttaataag ttgaagggca ccgcgacgct cggcgccctt ccttgcatcg cgaacgcttt
     3241 gccgaacatg tctcgttacg ggatggttaa ccagttgttg cttagcgcat tatcaatccg
     3301 cgcgtagagc gtcaggacga tgtcctaggg aatagtccga caagtgcgtt tcgacgatcg
     3361 tcttttgacc gtcttaaacc aaccagccga agatcgtcac gacgtggcgg tacgctggcg
     3421 gcagcttgtc gacctcgtcg cgcgctccgg cgcgagcagc gccagcccga tgatttcgca
     3481 agcacttgag gcgatacgta cggaagcacc gcgtgttgct gaaccgctgc gagcggcagc
     3541 agcccgagcg gttgcggcac ttccagtccc tcttggcctg ttggaatatt tcgtgacgga
     3601 cagacttgcc gtatctgcgc cggtactcgc ctcggcgagc ctcgatgatg ttcagtggca
     3661 gaggctgcgc gccctggccg atgaggaaac gcggggattc atcgaggcgc ttcacccgga
     3721 aacaggaggt gagcgcggcg cgaacctacc agcaccgcaa ccgccaagcc agacggaggt
     3781 cacggagaac acggcatatg ttcctccttc ggtgcacgac gttgtcgagc gcatcgaaga
     3841 gcggcgtcgt atgcgctcga tagaacctgt ttcctcttcc gccccatcga cgagtgagct
     3901 cgagacgtcg acgctgttcc gctgggaatg tggaccaggc ggcgagatcg cctgggtcga
     3961 cggggtgcca cgcggcgcgc tgattggccg ttcgatcgct aagtccatcg agggaggcgg
     4021 tgaccacatc gatcacgacg ttgttcgggc cttcaatctg cgtgctcctt tccgcgaccg
     4081 attggtggcg atcgccgcgg ctggttccgc gtcgggagag tggaagatta gcggaatgcc
     4141 ggcgtttgat cccgccgatg gtcgcttcgc gggctatcgt gggattgccg tccgcgagac
     4201 aagtacatcg gatgctcagc gcggatccga agccgaggca attccggacg tccttgctga
     4261 ccctgcctcg ctccgcgagc ttgtccatga gatcaagacg ccactcaatg ccattatcgg
     4321 attcgccgag atcatcgagg gacagtacct tgggccggcg gatcgaggat accgcagccg
     4381 agcttttgag atcgttcgcc aggcacggct cctgttgacc gcgattgacg atctcgattt
     4441 cgcggcaaag gcgcattcag cggggacgcg acgagattgg gtcgatcttg ccgcactggt
     4501 tgatcgtgaa gcgcaatcgc tccgagactt tgcggagcaa agacgtgtca atctgcaagt
     4561 gatcggcgtt cggttcgatg ttcccgcgaa agtcgaaccg gagctcgcca atcggttgct
     4621 tttccggctg ttcggggcgc tagccgatct tgcggagcca ggggaggtag ttcagcttca
     4681 tctcgagctt acgaacgatc gtgcgttcgt cgtattcagt cgccccaaat caatacgcga
     4741 actgtcggaa gcggaattgt tcggcagcac gtcggacggc ggtctggggc gcttcatgct
     4801 gcgaatagct cgcggtcttg cgcgcatagc tggcggcaat cttatcagcc gtcaggacac
     4861 aatcgcgttt gtctttccac gcggttgacg tttcaagcct tggcgagggc cttggctttc
     4921 gtctatcggg gcacggccgg ggagggcctg tagctcaacg gtagagctgg ccgctcataa
     4981 cggctaggtt gtaggttcga atcctgccgg gcccaccgcc gctcgctggg tggtctgtac
     5041 gaccaccgag cagcgcgcta ccggcggtct cgatttgatg tcggggagta gcgcagtctg
     5101 gtagcgcatc tgctttggga gcagagggtc gcaggttcga atcctgtctc cccgaccatc
     5161 attcgccttg tttattccgg acacatcggt cgtctaattg cgggcggcgc aagccctttt
     5221 tgctgatcac ggtgccggtg cagggtcgtc tacgcggtca gcatgagctg ccgcaggatg
     5281 gagcttcgcg ggggacgagc cttccgatgt aacagccgca ctggatattt ccgtgcatcc
     5341 gatgtcgcgg aatggctctc tccacgcccg gccggtgatc agcgctaggg ctggagcgcc
     5401 gatgagaagt ctaggcgacg gctcctgcag ttcggtcgaa gtacgacccg ttcttgagca
     5461 tagcatgcat gatcacggca agcttgcggg cgagtgcgac ggcggcgcgc ttgaacccga
     5521 tccgctcctt caaattgaga gcccaggttc gcaagctgca ttccatgccg cttcgcgtga
     5581 gcaggacgac cgctgcctca taaaggcggc ttcgcacctc ggcatcgccc cttctcgaga
     5641 tatggccatc ataatcaact tctcctgact ggtagcgcct cgttgtcagt cccagccagg
     5701 cgccgacgga tcgtgagttc ttgaagttgg ctgggtcctc gatcgccgcc gcgaacgtgc
     5761 tcgcggtgat cgcccccacg ccaggcacag acatcaggag gcggcatgca tcactcgcgc
     5821 gtgctttggc gag
//
LOCUS       DASRBJ010000223        12432 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_536471,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000223 DASRBJ010000000
VERSION     DASRBJ010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 12432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12432
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_536471"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1139)
                     /gene="gorA"
                     /locus_tag="VE968_06210"
     CDS             complement(<1..1139)
                     /gene="gorA"
                     /locus_tag="VE968_06210"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004362 - glutathione-disulfide reductase
                     (NADP) activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HZU51451.1"
                     /translation="MADFDLFVIGAGSGGVRAARVSAAYGARVAVAEEHKVGGTCVIR
                     GCVPKKLLVYGAHFAEDLDDAAMFGWDVPQKHFDWQVLRDNVLAEVTRLEGAYTDTLT
                     NHDVTIFKERAELTGANSIRLASGKELTADKILIATGATPVMPQIEGIEHAISSNEVF
                     HLETLPKRIVIAGGGYIANEFAGIFHQFGTHVTLVNRTDVILRHYDQQIVDRLMQISL
                     RKGIDFKFHATIEKIERRDDQTLHLRMTGCDDLQADAVLFAVGRRPNTKGLGLEAAGV
                     ELAQKGQIKVDADNRTSVRSIFAVGDVTDRIQLTPVAIREGQAFADTVFGNSPHQVDY
                     SCVPSAVFSHPPLAGVGMTEGQAREKLGQVKTFTSDFRAMKNVLAG"
     gene            complement(1199..2674)
                     /gene="pgi"
                     /locus_tag="VE968_06215"
     CDS             complement(1199..2674)
                     /gene="pgi"
                     /locus_tag="VE968_06215"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020486372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HZU51452.1"
                     /translation="MQPISFKRLDELFAAEPDRLTRLAFETAGIYFDWSKTHLDGALI
                     ASFADRARQMGFDAARNALFNGEVVNPSEQRPATHIAERGSGTPDEVDLATARRQRTR
                     ALVDAIEAGAFGPLTGILHIGIGGSVLGPALLVDALGRRSGAFTVRFLSNIDGAAFDD
                     AVEPLDPATTLLVVASKTFTTLETLTNLDAARQWLRAAGVDDPDGRIVAVTARPEAAL
                     AQGIDETRTLQFGEGVGGRYSLWSSVGLTAALALGWDAFEMLLEGAAEMDRHFRFAGF
                     DANIPLIAAYADRLYVEQFSCQTRALFAYDERLRLLPFYLQQLEMESNGKSVMTSGQP
                     VAHPTAPVTWGGTGTDAQHAVFQLLHQGTVLVPVEFVAVREGDDAQDPEHHRLLLLNA
                     FAQGAALMQGRQSEDPQRSYEGNRPSTTVLINDLDARSLGALIAFYEHRTFANAVLLG
                     INPFDQFGVELGKEIARQLADEESDRRLDSSTRALMQRAGI"
     gene            2833..3612
                     /gene="lepB"
                     /locus_tag="VE968_06220"
     CDS             2833..3612
                     /gene="lepB"
                     /locus_tag="VE968_06220"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015456993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HZU51453.1"
                     /translation="MRFVLVVALLSWMFRTFFVQPFYIPSGSMLPTLYIGDYLIVAKW
                     PYGYSRYSFPLDVPAFEGRIAAALPKRGDVVVFRNPVENADLIKRVIGLPGDTVEMRG
                     GLLLLNNRPVERRHLPDATLTVSPNSPCRAAPESLRNMAIVNGRATCIYHAYLETLPG
                     GPSYTVLDQVVNGPADNFPATRVPRGHLFVMGDNRDDSLDSRFPTADGGVGMLAEENL
                     VGRALFTFWSTDGTASYLKPWTWFTALRGDRIGNGYTGASR"
     gene            3609..4274
                     /gene="rnc"
                     /locus_tag="VE968_06225"
     CDS             3609..4274
                     /gene="rnc"
                     /locus_tag="VE968_06225"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HZU51454.1"
                     /translation="MSDSLREFVEDRLGHEPSDIRLFELALTHSSSGGSNYERLEFLG
                     DRVLGMVIAEALYERYPKEPEGNLSKRYNALVDRETCAENGRKLGIPSLVRLGKQARE
                     DGASQSENVVGDVVESLIGALYLDGGLDVAKRFILELWQADLATQRRAPQHPKSALQE
                     LAAAKGVAPPSYEVIARTGAHHAPTFTVRVSVARIGEATADGASKQDAETSAAAALLA
                     NLK"
     gene            4271..5173
                     /gene="era"
                     /locus_tag="VE968_06230"
     CDS             4271..5173
                     /gene="era"
                     /locus_tag="VE968_06230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HZU51455.1"
                     /translation="MSDATPRAGFVAVIGAPNAGKSTLVNALVGQKVAIVSPKAQTTR
                     SRLMGIAIQGSAQILLVDTPGIFQPRRRLDRAMVAAAWTGAQDADLILFVIDVVTGVN
                     AEVTRIASALDSRKQPLFVALNKIDLVDKSGLLALAARLTAELRPDRIFMISAAAGDG
                     VPDLKEALAAGVPEGPWLYPEDEVSDATDRMVAAELTREQIVNRLHQELPYATAIETE
                     TWEDRTDGSTAIRQQILVERDSQKAIVIGKGGHRLKAIGAAARAAIAQHLGRPVHLFL
                     HVKVNPRWDEDRQLYREIGLEWSD"
     gene            complement(5216..5932)
                     /locus_tag="VE968_06235"
     CDS             complement(5216..5932)
                     /locus_tag="VE968_06235"
                     /EC_number="2.3.1.286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020819207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0017136 - NAD-dependent histone
                     deacetylase activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacylase"
                     /protein_id="HZU51456.1"
                     /translation="MADLRNIVILTGAGVSAESGLATFRGPDGLWEGHRVEDVATPEA
                     FRRDPSLVHAFYDARRARLASVEPNAAHRALARLDSEWPGDLLLVTQNVDDLHERAGS
                     KRLLHMHGELTRGWCLACGSRFSWNGNMGERASCPICSRRGQVRPDIVWFGEMPYEMD
                     RIDDALRRCDLFVSIGTSGAVYPAAGFVQTARYCGATTLEMNLEPSLGSYMFDETRNG
                     PASELVPRWVDELVGRQLAL"
     gene            6049..6807
                     /locus_tag="VE968_06240"
     CDS             6049..6807
                     /locus_tag="VE968_06240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HZU51457.1"
                     /translation="MVQSAIRIGIGGWTFPAWRGTFYPQGLAQSKELEFASRQFGAIE
                     INATFYGRQSPKSWSAWEKAVPDGFQFSVKGSRYVVTRPRLADAGEALGVYFSQGMSA
                     LGAKLGPVLWMLSARRHFDCDDVAAFFGLLPRELEGIPLRHVIEPRHESFRDDKFFQL
                     CRDHDIAVVFGDDDEFPCIDADTASFAYARLQRMREDVATGYDAASIERFAERARLWH
                     ERNRDAYIFMINGAKIRAPAAARALQASLHINLP"
     gene            6933..7373
                     /locus_tag="VE968_06245"
     CDS             6933..7373
                     /locus_tag="VE968_06245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51458.1"
                     /translation="MRKLILCAIGASLMVSPLAARAQELPLVGGDYWDITAVKIDDGH
                     FADYADFLVNKARRQNEFAKSKGWIKAYYILSNNNPRKDEPDLYLVTVADRIPTPAEQ
                     IARNREMNAFLQSDDRKEIAQSGQRATYRHITGDMLLQELVLAH"
     gene            7432..8145
                     /gene="dapB"
                     /locus_tag="VE968_06250"
     CDS             7432..8145
                     /gene="dapB"
                     /locus_tag="VE968_06250"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014075003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HZU51459.1"
                     /translation="MRATTPTRISLFAPRGRMGRAIASAAAETDDFVIDQNHPDVLVD
                     FSAPAALQASLGQALSANMPILVGTTGLDDLAGEHIAAAAEKIAVLRAANTSLGVAVL
                     ADLVERAAAILNCGWDIEITETHHRMKADAPSGTALLLGRAAARGRRSELNIETPREG
                     TGLKRTTGAIGFSSVRGGTVAGDHDVMFLGPDERLILSHRAESRIIFARGALFAARFL
                     VGKPAGLYSMRDVIGASGG"
     gene            8142..9488
                     /locus_tag="VE968_06255"
     CDS             8142..9488
                     /locus_tag="VE968_06255"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HZU51460.1"
                     /translation="MSEPQAPPQDSRLARRLGPFDATMLVMGGIIGSGIFVTPAEVAR
                     HVQAPLLIVGVWVLGGLIALAAAFVYAELSARRPEVGGQYAYLRDAYGQMPAFLYGWA
                     LLLVIQSGGMAAVAITFARYVGELVRFNAPDSLVAVPTLAALTLINCIGVRSGSNVQS
                     SLMVLKIMGILALVLVGCLLVPASPDLRSTAHRLPLAASSIGAIGAAMTPVMFSYGGW
                     QTASFVAGEMRNPQRDLALGLLLGVLGVILLYTAVAAVCVHGLGPAALGSSKTPATDV
                     MRAGIGPRGATFIGICVTVSTLGFLSQGMLTAPRVYFAMAEGGLFFRRVAEVSERTRV
                     PVAAIVLQGTAAAVIALSGTFGQILSYVVSVDFLFFGLTGAALFVFRRRSFADEVAFK
                     VPGHPVTTAFFVIACWAVVIATILNNPLNSLIGYAILAAGIPACLYWQRKNSKANE"
     gene            9485..10561
                     /locus_tag="VE968_06260"
     CDS             9485..10561
                     /locus_tag="VE968_06260"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HZU51461.1"
                     /translation="MRSTQSDYMHWAKFKPPVRYALTTSEVPHFRMDSLPITIADLEL
                     DGASHPRFAPLRERIADRYGVLADQVVTADGTSMANFLAMATLIAPGDEVLVEKPTYE
                     LLLDAASFLGASIRRFDRKASDAFRLDPAAVEQALTVDTRLIIITNLHNPSSVLAAED
                     ELRQIGELADRVGARVLVDEVYLDSASGAARPRSAVHLGPTFLATNSLTKVYGLSGLR
                     CGWVLAEPKLVERMWRLNDLFGVNQAHQAERLGCIAFDHLDEVIGDNPSVLEYNRSVF
                     NQFVSATSGIDCAPARHGITAFPRWHGGDTQRLDDLLRQQYDASVVPGRWFEFPEHFR
                     IGFGLPKQDFEAALERLGAAMAKL"
     gene            10562..11329
                     /gene="nth"
                     /locus_tag="VE968_06265"
     CDS             10562..11329
                     /gene="nth"
                     /locus_tag="VE968_06265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010410179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HZU51462.1"
                     /translation="MKREEIFEFFRRLAEANPSPTTELDYTNPYTLLVAVVLSAQATD
                     ASVNIATKPLFARIRTPEEMVELGEEAFRDAIKTIGLFNTKAKNVILLSQVLIDDYDS
                     TVPSNREDLQSLPGVGRKTANVVLNTAFGEETFAVDTHVFRVCNRTGLAPGKSPDEVE
                     AKLEKIVPQPFRRDAHHWLILHGRYICKARLPECWRCPVSDLCRYRPKTVAPDARVKP
                     SVARNATQASSKARTGKGRTDSKLKQGQSRSRSSRLP"
     gene            complement(11214..12236)
                     /gene="alr"
                     /locus_tag="VE968_06270"
                     /pseudo
     CDS             complement(11214..12236)
                     /gene="alr"
                     /locus_tag="VE968_06270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215915.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008784 - alanine racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
BASE COUNT         2474 a         3787 c         3695 g         2476 t
ORIGIN      
        1 ccggctagaa cattcttcat cgcgcgaaaa tcggacgtaa aggttttcac ctgcccgagt
       61 ttctcgcgcg cctgtccttc ggtcatgccg acacctgcga gaggcgggtg actgaagacc
      121 gccgatggta cgcagctgta atccacctgg tgcgggctgt tgccaaagac ggtgtcggca
      181 aaggcctgcc cttcgcgaat tgcgaccgga gtgagctgaa tgcgatccgt gacatcgcca
      241 acagcgaaga tcgaccgcac cgaggtacga ttgtccgcgt caaccttgat ctgtcccttt
      301 tgcgcaagct cgacgcccgc tgcttcgagt ccgagaccct tggtgtttgg ccggcggccc
      361 accgcgaaaa ggaccgcgtc cgcctggaga tcgtcgcacc ccgtcatcct caggtgcaag
      421 gtctggtcgt cgcgccgctc gattttctcg atggtcgcat ggaacttgaa gtcaattccc
      481 ttgcgcagcg agatctgcat gaggcggtca acaatctgct ggtcgtagtg gcgcaagatt
      541 acgtcggtcc gattgacgag cgttacatgc gtgccgaact ggtgaaaaat tccagcaaac
      601 tcgttcgcga tatagcctcc gccggcgatg acgatgcgct tcgggagcgt ttcgaggtgg
      661 aacacttcgt tcgagctgat ggcatgttcg atgccctcga tctgcggcat tacgggcgtt
      721 gcccccgttg caatcaggat cttgtccgca gtcagctcct tgccgctcgc caatcggatt
      781 gagttagcgc ccgtaagttc cgcgcgttcc ttgaagatcg ttacatcgtg attggtgagc
      841 gtgtcggtat aggcgccttc aagacgcgtt acctccgcga gcacgttgtc gcgaaggacc
      901 tgccagtcga aatgcttctg cggcacatcc caaccgaaca tcgcggcatc gtcgaggtcc
      961 tcggcaaaat gggcgccata gacgaggagt ttcttgggaa cgcagccgcg gatgacgcac
     1021 gtacccccga ccttgtgctc ttcagcaacc gcgacgcgag caccataggc agctgatacg
     1081 cgtgcagcgc gcaccccgcc agaaccagca ccgatcacga acaggtcgaa gtcagccatg
     1141 tttgagctcc atgagaggcc tgttccgggt tccagcaatc agccgtgcga tgctcatgtc
     1201 agatccccgc gcgctgcatc aaagcgcgcg tagacgaatc aagccttcgg tcactctcct
     1261 catcagcgag ctgccgggcg atctccttgc cgagttccac gccaaattga tcgaacgggt
     1321 taatcccgag gagaacggca ttggcgaagg ttcggtgttc gtagaaagca atcagcgcgc
     1381 caagcgagcg cgcgtcgagg tcgttgatca gaaccgtcgt gcttggccgg ttcccttcgt
     1441 aagaacgttg cgggtcttcg ctctggcgcc cctgcatcaa cgctgcgccc tgcgcaaagg
     1501 cgttcagcag aaggagccga tgatgctccg ggtcttgcgc atcatcgcct tcgcgcacgg
     1561 ccacgaactc gaccgggaca aggacggttc cttggtgaag taactggaaa acagcgtgct
     1621 gagcgtcggt gcccgtgccg ccccacgtga cgggtgccgt cggatgagcg accggttgac
     1681 cgctggtcat gacggatttg ccattcgact ccatctcgag ctgctgaagg taaaacggaa
     1741 gtagccgcag ccgctcgtcg taggcgaata gagcacgtgt ttggcaggag aactgttcca
     1801 catagagccg atcggcatag gcggcgatca gcgggatatt cgcgtcgaaa ccggcaaacc
     1861 tgaaatgccg atccatttcc gctgcgccct cgagcagcat ttcaaacgcg tcccacccca
     1921 aggccaatgc cgccgtaagc ccgaccgagc tccaaagtga gtaacggcca ccgacacctt
     1981 cgccgaactg caaggtccgg gtttcatcaa tcccctgcgc aagcgctgct tcaggtcgag
     2041 ccgtcacggc cacaatgcgc ccgtctggat catcgacgcc ggctgcacgc agccactgtc
     2101 gcgcagcgtc gagattggta agtgtctcaa gtgtcgtgaa ggtcttggaa gcgaccacaa
     2161 gaagcgtagt tgccggatcg agcggctcga ccgcgtcgtc aaatgcagca ccgtcgatgt
     2221 ttgacaagaa acggacggtg aatgcaccgg accgccgccc gagcgcatcg acaagcaagg
     2281 cgggtccgag cactgaacca ccaattccaa tgtggagaat tccggtgagc gggccgaacg
     2341 ctccagcctc gatggcgtcc acgagcgctc gagttcgctg gcgacgcgcg gttgcaagat
     2401 cgacttcgtc cggagtgccg ctgccgcgtt cggcaatgtg ggttgcgggt ctctgttcgc
     2461 ttggattgac gacctcgccg ttaaagagcg cattgcgcgc tgcatcgaat cccatttgac
     2521 gcgcacgatc ggcaaagctc gcgattagcg ctccgtcgag atgggtcttc gaccagtcga
     2581 aatagatccc tgctgtctcg aacgccaggc gggtaaggcg gtcgggttcc gcggcgaaca
     2641 gctcgtcgag gcgcttgaat gaaatgggtt gcatcgctgt tgcacatagt gcgaggggcg
     2701 ccgtttgcca ccccgcttga cgcggccacg ccagcgcgga acaggggcga tgaaatggca
     2761 tcgcgattgt cccgccgaac tcgcctcaga ggctcatcag ctgccagcgt tgaaaagagc
     2821 actgggtcac tcgtgcgctt cgtgctcgtc gtcgcattgc tttcctggat gttccgcacc
     2881 ttcttcgtgc agcccttcta catcccttct ggatcgatgc tcccgacact gtacatcggc
     2941 gattatctaa tcgtcgccaa atggccctat ggctattcgc gctacagctt ccctctcgat
     3001 gttccggctt tcgaaggacg aattgcggct gcgctgccca aacgcggcga cgtggtggtg
     3061 ttccgaaacc ccgtcgagaa tgccgatctc atcaagcgcg tcatcggtct tcccggtgac
     3121 acagttgaaa tgcgaggagg cttgctgctc ctcaacaacc gcccggtcga gcggcggcat
     3181 ctgccggacg ccacgctgac cgtcagcccg aacagcccgt gccgagcggc acccgaaagc
     3241 ttgcgcaaca tggccatcgt gaacggacga gcgacgtgca tttaccacgc ctatctcgag
     3301 acgctcccgg gcggtcccag ttacaccgtc cttgaccaag tggtgaacgg acccgccgac
     3361 aacttcccgg caactcgcgt accacgaggc cacttgttcg taatgggaga caatcgcgac
     3421 gatagtctcg acagccgttt cccgaccgcg gacggcggtg tcggcatgct cgccgaggaa
     3481 aatctcgtgg gtcgcgccct ctttaccttc tggtcgaccg acggcactgc gtcgtacctg
     3541 aagccctgga cgtggttcac ggctcttcgc ggcgatcgta tcggcaacgg ctatacgggt
     3601 gcttcgcgat gagcgacagc ctccgggaat tcgtcgagga cagacttggc cacgagccgt
     3661 ccgacatccg cttattcgag cttgcactca cccattcgag cagtgggggc agcaactatg
     3721 aacgcctcga gttcctcggc gatcgcgtcc tcgggatggt tatcgccgag gcgctctacg
     3781 agcgctatcc caaagaaccg gaaggcaacc tgtcaaagcg ctacaatgcg ctcgttgacc
     3841 gggagacatg tgcggaaaac gggcggaagc tcggcattcc gtcgctcgtc cgccttggca
     3901 agcaagcgcg ggaagacggc gcgagccaga gcgagaatgt cgttggtgac gtggttgagt
     3961 cgctgattgg cgctttatat ctcgatggcg ggctggatgt cgcgaaacgg ttcatcctcg
     4021 agctgtggca agcagatctc gcaacacaac gccgagcgcc gcagcacccg aagtcggcgc
     4081 ttcaggagct tgctgccgca aaaggcgttg cgccgccgag ctatgaagtg atcgcgagga
     4141 ccggagctca tcatgctccg acgttcaccg tgcgtgtatc cgtggcacgg atcggtgaag
     4201 cgactgccga tggggcgagt aagcaggatg ccgagacatc ggctgcagcg gcgctattgg
     4261 cgaacctcaa atgagcgatg ctactccaag agcggggttc gtggcagtca tcggcgcacc
     4321 aaatgcgggc aagtcgacgc tcgtcaatgc gctcgtcggt cagaaagtgg cgatcgtcag
     4381 ccccaaggca cagaccacgc gctcgagact gatgggcatt gccattcagg gctcggcgca
     4441 gatccttctt gtcgacacgc cgggtatttt ccagcctcgg cgacggctgg accgcgcgat
     4501 ggttgccgcc gcctggacgg gcgctcagga cgccgacctc attttgttcg tgatcgacgt
     4561 cgtcacgggc gtaaacgctg aagtcacgcg catcgcgtcg gctcttgata gtcgcaagca
     4621 gcccttgttt gtcgcgctta acaagatcga tcttgtcgac aagagtggtt tgctcgcgtt
     4681 ggcggcgcgc ctaaccgccg agctcaggcc cgacaggata ttcatgatta gcgcggctgc
     4741 gggcgacggc gttcccgatc tgaaggaggc tcttgccgcg ggagtgccgg aaggtccttg
     4801 gctgtacccg gaggatgaag tctcggatgc gaccgatcga atggtcgcag cggagcttac
     4861 gcgtgagcag atcgtcaatc gactgcacca ggaactcccc tatgcaacgg cgattgagac
     4921 cgaaacttgg gaggaccgta ccgacggctc gacggccatt cgccagcaga ttcttgttga
     4981 acgagacagc caaaaagcca tcgtcatcgg caagggcggc catcggctga aggcaattgg
     5041 agccgccgcg cgtgccgcaa tcgcgcaaca tcttggaaga ccagtgcact tgttccttca
     5101 cgtgaaggtt aatcctcgct gggacgaaga tcgccagctc tatcgggaaa ttggacttga
     5161 atggtcggac tgaccgaaaa cgaggaccgg cggatgcggt cccgcacggg ctcgctcaca
     5221 atgcgagctg gcgaccaact agttcgtcca cccatcgcgg cacaagttcg ctcgccggcc
     5281 catttcgagt ctcgtcgaac atgtagctgc caaggctcgg ttcgagattc atctcgagcg
     5341 tcgttgcgcc gcagtagcgg gcagtctgaa cgaagcccgc cgccggataa acggcgcccg
     5401 atgtgccaat cgatacgaag aggtcgcagc gcctaagcgc gtcatcgatc cgatccattt
     5461 cgtacggcat ctcgccaaac cagacgatgt cgggtctgac ctgcccgcgc ctcgagcaga
     5521 tcggacaaga agcacgttcg cccatgttcc cgttccacga gaaacgagag ccgcacgcga
     5581 gacaccatcc gcgcgtcagt tcaccatgca tgtgcaacag gcgcttggaa ccagcacgtt
     5641 catgcaggtc atcgacattt tgggtgacta gcagcaggtc gcccggccac tcggaatcga
     5701 gccgagcgag ggcgcggtgt gcggcattcg gctcgacgga ggcaagtctt gcgcgacgcg
     5761 cgtcgtagaa cgcgtgcacc agtgacggat cgcggcgaaa tgcttccggt gtagcgacgt
     5821 cctcgacgcg gtgcccttcc caaagaccgt ccggtccacg aaacgtcgcc agtccacttt
     5881 cagcggaaac cccggctccg gttagaatga cgatatttcg aagatcggcc atgcgaggca
     5941 tctacgaacc atcgccccgg tgggctaccg tgaaaacgcg aacgcaggga tgatcgctgc
     6001 ccactgttgc gaagttcttc gttcgacgct tagtgcgcat gagaatcgat ggtgcaatca
     6061 gcaatccgta ttggcatcgg cggatggaca tttcccgcgt ggcgcggaac attttacccc
     6121 cagggcctag cgcagtcgaa agaactcgaa ttcgcctcac ggcaattcgg agcgattgaa
     6181 atcaatgcga ctttctatgg gcgacaaagc ccgaagagct ggtccgcttg ggagaaggcc
     6241 gtcccggacg gctttcaatt ttcggtcaaa ggctcgcgct acgtcgtaac gcgcccaagg
     6301 ctcgccgacg caggcgaagc gctaggcgtg tatttctcgc agggaatgtc ggcactcgga
     6361 gccaagctcg gtcctgtcct ctggatgctt tccgcccgcc gtcacttcga ctgcgacgac
     6421 gtggccgcct tcttcggctt acttccgaga gaattggagg gtattccgct tcgccacgtg
     6481 atcgaaccgc gacacgagag ctttcgcgac gacaagttct tccaactttg ccgtgatcac
     6541 gacattgcgg tggtgttcgg cgacgacgac gaatttccct gcatcgacgc cgatacggca
     6601 agttttgcct acgctcgcct gcagcgcatg cgcgaggatg ttgcaaccgg atatgatgcc
     6661 gcatccattg aacgtttcgc cgagcgggca cggctctggc acgagcgcaa tcgcgacgct
     6721 tacatcttca tgatcaacgg cgccaaaatt cgcgccccgg ctgcggcccg ggcgctgcaa
     6781 gcgagccttc acattaattt gccctaagcc tcgttccgtg ctttacggct gctcggaacg
     6841 acgccgctag ttgctggcgt ctcgccggtt gcggcgacgc cgttccttca agcgcggagc
     6901 cggggggctc ccgccagagg gaggcaatgc acatgcgtaa gctgatactc tgcgcaatcg
     6961 gcgcatcctt gatggtttca ccgctagcag cacgtgcaca agaactgccg ctcgtgggcg
     7021 gtgactattg ggatattacg gcagtcaaga tcgatgacgg gcactttgcc gattatgccg
     7081 atttcctcgt taacaaggcg cgtcggcaga atgagtttgc gaaatcgaaa ggctggatca
     7141 aggcttacta tattctcagc aacaataacc cgcgcaaaga cgaacccgat ctctaccttg
     7201 tgaccgttgc ggatcggata cctacacccg ccgagcagat tgcgcgtaac agggagatga
     7261 atgccttcct gcaaagcgat gaccgaaagg aaatcgctca aagcgggcag cgagcaactt
     7321 atcgccacat caccggcgac atgctgctcc aggaattggt gcttgcgcat taagcaaatg
     7381 ggagcgccga gcgattgcgc ggcgctccac gtttcgccat gaaacggcgg tatgcgagcc
     7441 acgacgccga cccggatcag cctttttgcc ccccgtggtc ggatgggccg agcaatcgct
     7501 tccgcagcag cggagacgga cgatttcgtc attgatcaga accatccaga cgtgcttgtc
     7561 gatttctccg cgccggcagc gttgcaagca agtctcgggc aggcactttc ggcgaacatg
     7621 cctatattgg tcggcacgac ggggctcgac gatttagcgg gcgaacacat tgcggccgcg
     7681 gccgagaaga tagccgtctt aagagccgcc aacacctcgc tcggcgttgc agtgcttgcc
     7741 gatcttgtcg aacgggcagc cgcgatcctc aattgcggct gggacattga aatcaccgag
     7801 acgcatcaca gaatgaaagc ggatgcgccg tctggaacag cgctactgct gggtcgtgcg
     7861 gcggcgcgcg gacggcgaag cgagcttaat attgaaactc cacgggaggg taccgggctt
     7921 aaacgaacga ccggcgcgat tggcttttcc tcggttcgcg ggggaaccgt cgcgggcgat
     7981 cacgacgtca tgttcctcgg acccgatgag cgtctcatcc tgtcgcaccg ggcggaaagc
     8041 cgaataatct ttgcccgagg ggcgttattt gcggcgcgtt ttctcgttgg taagcccgcc
     8101 ggtctttact cgatgcgcga tgtcatcggt gcgagcggcg gttgagcgaa ccgcaagcgc
     8161 ctccccaaga ttcccgcctc gcacgacggc ttggtccgtt cgacgcaacc atgctcgtca
     8221 tgggcgggat cattggttcg gggatcttcg tcacaccggc cgaagttgcg cgccacgtcc
     8281 aagcacctct tcttatcgtc ggtgtttggg ttctgggcgg cctcatcgcg cttgccgcag
     8341 ccttcgtcta tgctgaactt tcggcacggc gtccggaagt cggcggccaa tatgcctatc
     8401 taagagatgc ctatggacag atgccggcgt ttctctacgg atgggcactc ctcctcgtca
     8461 ttcagtccgg cggaatggcg gcggttgcaa tcaccttcgc tcgctatgtc ggtgaactcg
     8521 tccggttcaa cgctccggac agccttgtcg cggttccaac acttgcagct ttaactctca
     8581 taaactgcat tggagtgcgc tcgggcagca atgtccaaag cagtctcatg gtgctgaaga
     8641 tcatgggaat ccttgcgctt gtgctggttg gttgcctcct ggtcccggca tcgcctgatc
     8701 tacgctcgac cgcgcaccgc ctaccgctcg cggcatcgtc aattggcgcg attggcgccg
     8761 ccatgacgcc ggtgatgttc tcatacggcg ggtggcaaac ggccagtttc gtcgctgggg
     8821 aaatgagaaa cccgcaacgg gatcttgcgc tcggactgct ccttggcgtg ctcggtgtaa
     8881 tcctgctcta cacggcggtc gccgccgtgt gtgtacatgg tcttggacct gccgctctcg
     8941 gttcttcgaa aacgccggca accgacgtca tgcgtgcggg cattgggcca agaggcgcga
     9001 cctttatcgg catctgcgtg accgtgtcga cgctcggctt tctcagccaa ggaatgctga
     9061 cagcaccacg tgtctatttc gcgatggccg agggcggatt gttcttcagg cgcgtcgcgg
     9121 aggtcagcga gcgaacccga gtacccgtcg ccgccattgt cctgcagggc acggcggcgg
     9181 ccgtcatcgc gctgtcgggt acatttggcc aaatcctaag ctacgtcgtt tccgtcgact
     9241 tcttgttttt cggcctcact ggcgccgcac ttttcgtctt ccgccgccga agcttcgccg
     9301 acgaagttgc attcaaggtg ccgggtcatc cggtcacgac ggcatttttc gtcatcgcct
     9361 gctgggcggt tgtcatcgca acaatattga acaatccact caacagcctc atcggctacg
     9421 cgatccttgc tgcaggcatt cccgcatgcc tctattggca gcgaaagaac agcaaggcga
     9481 acgaatgagg tcgacgcaat ccgattatat gcattgggcg aagttcaaac cgcctgtgcg
     9541 ctatgcgcta acgacaagcg aagtacccca ttttcgcatg gattcgttgc cgatcacgat
     9601 cgccgacctc gaactggacg gtgcgagcca tccgcgcttt gcgccactgc gcgaacggat
     9661 tgcggaccgt tatggagtct tggccgatca ggtggtcacc gccgacggga cgtccatggc
     9721 gaacttcctt gcgatggcga ctctgatcgc gccgggcgac gaagtcctcg tcgagaagcc
     9781 gacctacgag ctgctcctcg atgccgcgag tttcctcggc gcatcaatta ggaggtttga
     9841 ccgcaaggcg tcggatgcat tccggctcga tcccgccgca gttgagcaag cactcacggt
     9901 ggacacgcgc ttgatcatca tcaccaacct ccacaatcca agcagtgttc tcgcggccga
     9961 ggacgaactg aggcagatcg gtgaacttgc cgaccgcgtt ggcgcgcgcg tgctcgtcga
    10021 cgaggtttac ctcgattcgg cgtccggcgc tgcacgacca cgcagcgccg ttcacctcgg
    10081 accaacgttc ctcgcaacga atagcctgac gaaagtatat ggacttagcg gcttgcgctg
    10141 cggctgggtc cttgcggaac cgaagcttgt cgaaagaatg tggcggctaa acgacctgtt
    10201 cggcgtgaac caggcgcatc aggcagagcg gctcggatgt atcgccttcg atcacctcga
    10261 cgaagtgatc ggcgataacc catcagtcct cgaatacaat cgctcggtgt tcaatcaatt
    10321 cgtctcagcg acgtccggca tcgattgcgc accggcaagg cacgggatca cggcctttcc
    10381 gcggtggcat ggtggtgaca cccagcggct cgatgatttg ctgcgccagc aatatgatgc
    10441 gtccgtggtg cccggacgat ggttcgagtt ccctgagcac tttcgcatcg gctttggtct
    10501 tccgaagcag gatttcgaag cagccctcga gcgcctcggc gcggccatgg ccaagctcta
    10561 gatgaagcgc gaggaaatat tcgagttctt caggagactg gcggaggcga acccctcccc
    10621 cacgaccgaa cttgattaca cgaatcccta taccttgttg gttgccgtcg tcttgtcagc
    10681 acaggcaacc gacgcaagtg tgaacattgc gacgaagccg cttttcgcgc ggatcaggac
    10741 gccggaggag atggtcgaac tcggcgagga agcatttcgc gatgccatca agaccatcgg
    10801 tctcttcaac acgaaggcca agaacgtcat cctgcttagc caggtcctga ttgatgacta
    10861 tgacagcacg gtcccgagca atcgcgagga cctccaatca ctcccaggtg tcggccggaa
    10921 aacggcaaac gttgtcctca ataccgcttt tggcgaagaa acctttgccg tcgacacgca
    10981 cgtttttcgg gtgtgtaacc ggaccgggct cgctcctggg aaaagccccg acgaggtcga
    11041 agcgaagctc gagaagatcg tgccgcagcc gttccgccgc gatgcccatc actggttgat
    11101 cctgcacggt cgttacattt gcaaggcgcg tcttcccgag tgctggcgct gccccgtttc
    11161 ggatctgtgc cgctatcgtc cgaagaccgt cgctccggac gcgcgagtca aacccagcgt
    11221 cgctcgaaac gcgacccaag cgtcgtcaaa agctcgtact gggaaaggcc ggactgactc
    11281 gaagctgaag caaggtcaaa gtcgatctcg atccagtcgc cttccctgag ctctggcgtc
    11341 gcgtcgactc caatcgcgac caagtccatc gaaacgcggc caaggacagg aagcgcgaac
    11401 tcgcccgaaa atgccgatcc gcgcgacgaa aagccacgca ggtaaccatc ggcatatcca
    11461 atgttgagaa ttgcagcttc ggtcgaacga tcggcaacga aggttgcgcc atagccgcag
    11521 ctttcacccg ccggaatcgt tcttcgctgg acgatttgtg cctccacgcg cacgacttgg
    11581 cgtatgtttc cgtgcgcctc cacgcgagga acaccgccat agagcgacag ccccggccgg
    11641 acgagatcga agctgtagct ccttccgagg caaacaccgg ctgaattggc gattgcgtat
    11701 cgcttcgctt taacgaccga ggcaaccgcg cgaaagcgtt caagctgcat ttcattcaat
    11761 gggctatcct cgtcggcgca ggcgagatgg ctgtggagag tgtcgaccgc gacgccgtcc
    11821 agtaccccaa tttcggtcgg tcggagaccg agcctattca ttccggtgtc gatcatgacg
    11881 tcgcacagcc ccggcgggtt tatctccttc cagcgtgcga cctgttcgat gctgttaaga
    11941 cacgggcgag ccgtgacgga gcgcaaggcc tcgatgtcat cgcgcccgag accgtgcaga
    12001 acgacgacgc tcgaatgcgt tgctaaatcg ccaagagcct ttgcttcggg ccagctggag
    12061 acgaagaaat cacgacaccc ggtttcgatc aatgctttgg tgacctcgcg cgcgccaagg
    12121 ccgtaagcgt ccgccttgac cgctgctccg gcagggactc ccgcccggtc cgctaaccag
    12181 cgccagttcg actgaattgc ggatcgatcg atcgtcaggc gcagcgggcg gtgcatggtt
    12241 gcgccgtaac gacgctactg cggcgcgtcg agcttggcct tcgctgcttc ccagttcctc
    12301 ccatcgaact tttcgactcg aagcacgacc ggatcatcga ggcaatttgc attgacgctc
    12361 cacgcgtcgg ggtgcgaccg cggctggtag aagctcttca cgccgcaatg acgacagaac
    12421 aaatgctcgg ca
//
LOCUS       DASRBJ010000224         3942 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_125850,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000224 DASRBJ010000000
VERSION     DASRBJ010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3942
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125850"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..329)
                     /locus_tag="VE968_06275"
     CDS             complement(<1..329)
                     /locus_tag="VE968_06275"
                     /inference="COORDINATES: protein motif:HMM:NF045350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase family protein"
                     /protein_id="HZU51463.1"
                     /translation="MTEPASLVVPDQGQKARLIHLVDKESFEPWLRRCPAEDRAFIEA
                     QRFDGKCPYAFLLLPRGADFEVVTCVSAVDKLSPWCLAKLAESLPEGTYKLARGDAGI
                     AALGWILG"
     gene            550..1536
                     /locus_tag="VE968_06280"
     CDS             550..1536
                     /locus_tag="VE968_06280"
                     /inference="COORDINATES: protein motif:HMM:NF002558.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HZU51464.1"
                     /translation="MRPLLHARLINGRFGDPTVFVETLHRREALLFDAGDLSALSTRD
                     LLRIDHVLLTHLHMDHFIGFDALLRANVGRSKTIRVIAPPRSGERLEHKLRAYEWDLV
                     DGYANDLLFEVIEYGPDGPQRAARFRLKRGFVRECIDIPGCWDRIGDTSLDVAFLEHH
                     GPCLGFALCEPAHANVWKNRLLERGLTTGAWLRTLKSAVLEGQSDHKGIRIADDDVRP
                     LSALRDLVTISRGQKIAYVTDVADTPSNRAAIVKLAWGADLFFLESRFAGKDEGHARD
                     RAHLTTKASGEIARAANVRRYEPFHFSARYEGEEERMLAEADAAFRSSARGV"
     gene            1614..2564
                     /gene="gshB"
                     /locus_tag="VE968_06285"
     CDS             1614..2564
                     /gene="gshB"
                     /locus_tag="VE968_06285"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004363 - glutathione synthase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HZU51465.1"
                     /translation="MSLRIAVQMDPLDKINIGGDSTFALMLKAQERGHRLFHYLAEDL
                     TYDRARVFAGAHQVKVQPTPGNHFDLGKFAILDLGTDVDVVLMRQDPPFDLGYITATH
                     LLERIQQETLVVNDPAQVRNAPEKLWVLDFARFMPATMITRSLGAARKFLAEHREIVI
                     KPLHGFAGGSVFRVGADGQNLASLLELFNRTYREPHVLQAFIPEIVQGDKRIVLIDGE
                     VAGAVNRVPSEGEIRSNLAVGGTAAKTELTPGEEAICAALAPELKRRGLIFVGIDVIG
                     GRWLTEINVTSPTGLVAIDKFNGTDTAALFWDAVERRRNG"
     gene            complement(2650..3582)
                     /locus_tag="VE968_06290"
     CDS             complement(2650..3582)
                     /locus_tag="VE968_06290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009820790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0009037 - tyrosine-based site-specific
                     recombinase activity [Evidence IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA];
                     GO_process: GO:0007049 - cell cycle [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HZU51466.1"
                     /translation="MADDPALLVDDPAHAFVARWHEHLRYDRRSSPHTVRAYAATANR
                     LIAFLGRYLGESVSAATLNNLGQADLRAFLADRRQRGLGPSSAARELSGVRAFLRYVA
                     DQQGRTAALPRTRAPKRPRTLPRPAAPEEAFELAENAAEGASAPWIGARDLAILLLLY
                     GAGLRVAEAMSLSADLLPLGSSIRVTGKRAKTRIVPVVAAVREAINDYVRQCPYSLQG
                     SVPLFVGARGGPLNADLVRRSVAAARKRLGLPDSLTPHALRHSFATHLLARGADLRSL
                     QELLGHASLSSTQIYTAVDAARLLDVYRNAHPRA"
     gene            complement(3558..>3942)
                     /locus_tag="VE968_06295"
     CDS             complement(3558..>3942)
                     /locus_tag="VE968_06295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF484 domain-containing protein"
                     /protein_id="HZU51467.1"
                     /translation="VTQEWPLVLGIDAVALSLIVAGKGFRADGGGVQLVDPAILQRTI
                     DRVHGVEMRTVERGHPLFGPACDLIRAEALVRIDCEPPLPCGLLALGQRAELSLDARH
                     GSELLMFLGRSLAAMIRKWLTIPHS"
BASE COUNT          817 a         1191 c         1186 g          748 t
ORIGIN      
        1 cccaggatcc acccaagggc ggcaatgccc gcgtcgccgc gcgcaagctt gtaggtgccc
       61 tccgggagac tttctgcgag cttggcgagg caccagggcg agagcttgtc gacagcactg
      121 acgcaagtaa cgacttcaaa atccgcgccg cgcgggagaa gcaggaaagc gtacgggcac
      181 ttaccgtcga agcgctgagc ctcgatgaag gcacgatcct cggcagggca tctcctcaac
      241 cagggctcga agctttcctt gtcaaccaag tggatgaggc gagccttttg gccttggtcg
      301 ggaacgacga gcgaagctgg ttcagtcatg atcctgctct agacacctcg agcgcatgcg
      361 gccactcaat cgtcgatgcg cggatcacaa tccgccttcg catcaagcca cgggagaatc
      421 tcaggaggct tttccggccc attcgctgtt cgctcgggcg aggcagactc acggaggcag
      481 gaggcacatc cagcgcttct ttgaacggct cgtggaaaac gtcagcgaaa ctgcgcgttc
      541 atccgctcga tgcgcccgct gctccacgct cggttgataa acggtcgatt tggcgatccg
      601 actgttttcg tcgagacact tcaccgacgt gaagcgctcc tgtttgacgc tggcgacctg
      661 tctgccttga gcacgcgcga tctgctgcga attgatcacg tccttctcac ccacctgcac
      721 atggatcatt tcatcggctt tgacgcgctt ctccgagcca acgtcggacg ctcgaagacg
      781 atccgagtga ttgcaccgcc gcgcagcggc gaacgtcttg agcataagct tcgcgcttat
      841 gaatgggacc tcgtcgacgg gtacgccaat gatctgctgt tcgaggtcat cgaatatggc
      901 cctgatggac cgcaacgagc cgcgcgattt cgcttaaagc gtggcttcgt tcgagaatgt
      961 atcgacattc ctggttgctg ggaccgcatt ggtgacacca gtctcgacgt cgcattcctt
     1021 gaacatcatg gtccctgtct tgggttcgct ctttgcgaac ccgcgcatgc gaatgtttgg
     1081 aaaaaccgtc ttctggagag aggtctcacg acaggcgctt ggctccgcac tctgaagagc
     1141 gccgtgcttg aagggcaatc cgaccacaaa gggatacgca tagcggatga cgatgtgcgg
     1201 cctctttccg cattgcgcga tctcgtgacc atcagccgcg gacagaagat tgcctatgtg
     1261 acggatgttg cggacacgcc gtctaaccga gccgcaatcg tgaaacttgc ttggggtgcg
     1321 gatctcttct tcctcgaatc ccgatttgcc gggaaggatg aaggtcacgc acgcgatcgg
     1381 gcgcatttaa ccacgaaggc aagcggtgag atagcacgcg cagcaaacgt ccgccgatat
     1441 gagccgtttc atttttccgc acgctacgag ggcgaagaag aacggatgct cgcagaagcc
     1501 gatgccgcct tccgtagctc ggcccgtggc gtctaggtcg caccggcaaa ccagcacacg
     1561 ccggtccaaa gcatctgggc gcgccggtca tcgtcggcta gagcgtgctg cccatgagcc
     1621 ttcgcattgc cgtacagatg gacccgctcg acaagatcaa catcggcgga gactctacgt
     1681 tcgcgttgat gctcaaggcg caagagcgcg ggcaccggct tttccactat ctagccgaag
     1741 atctcaccta cgaccgcgcg cgtgtttttg cgggagccca ccaagtcaag gtgcaaccga
     1801 cgcccggtaa tcacttcgat cttggaaaat tcgcgattct cgatcttgga accgacgttg
     1861 acgtcgtgct gatgaggcag gatccaccat tcgatcttgg ctacatcacc gccactcatt
     1921 tgctcgaacg gatccagcaa gagacccttg tcgtcaacga tccggcgcaa gtgcgcaatg
     1981 cgcccgagaa gctgtgggtt ctcgactttg ctcgcttcat gccagcgacg atgatcaccc
     2041 gatccctcgg tgcggcgcgc aagtttcttg ccgagcatcg cgagatcgtc atcaagccac
     2101 ttcacggctt cgccggggga tcagttttca gggtcggtgc cgacgggcag aatctcgctt
     2161 cgcttctcga attgttcaac cgcacgtatc gcgagccgca tgtcctccag gcgttcattc
     2221 ctgaaatcgt ccaaggggac aagaggatcg tgctcatcga cggcgaagtc gcgggcgccg
     2281 tcaatcgcgt gccgagcgaa ggcgaaatac gctcgaatct cgcggttgga gggacggccg
     2341 ccaagactga gctcacgccg ggtgaagagg ccatttgcgc cgccctcgca ccagagctga
     2401 agcgccgcgg actgattttc gtcgggatcg atgtgatcgg cggccgctgg ttgacggaga
     2461 tcaatgtcac atcgccgacg gggcttgtgg ctatcgacaa attcaatggg acggacaccg
     2521 ctgcgctctt ctgggatgcg gttgagcgac gccgtaacgg ttagcggccg ttgatcgaca
     2581 cgctgccgaa aggcaaaatc cgatcagcaa cgaccacggt ttcttgggcc gtccacgtcg
     2641 aacgacagct caggcgcggg gatgcgcatt gcgatagacg tccagtaatc gcgccgcgtc
     2701 aacggccgta tagatctggg tggatgaaag gctggcatgc cccaagagtt cctgaagcga
     2761 tctcaggtct gcgccgcgcg ccagcagatg cgttgcaaag ctgtggcgga gcgcgtgtgg
     2821 agtaagcgaa tccggaagtc ccaatcgctt ccgggcagcg gcgacagaac ggcgtacgag
     2881 gtcggcattt agcgggccgc cgcgcgcgcc aacgaacagc ggcaccgaac cctgcaatga
     2941 ataggggcac tgccgaacat agtcgttgat cgcctcgcga acggccgcaa ccacgggtac
     3001 gatccgggtc ttcgctcgtt ttccagtcac acgtatgctc gagccgagcg gcaggagatc
     3061 ggcgctcagc gacatcgctt cggcaacgcg aagccccgca ccataaagca gcaacaggat
     3121 cgcaagatcg cgcgctccaa tccagggcgc gcttgctcct tcagcagcat tctctgcaag
     3181 ttcgaaggct tcctcgggtg ccgcggggcg cggaagtgtt cgcggtcgct ttggggctcg
     3241 ggttcgcggc aaggcggcgg ttcgcccttg ctgatccgcc acatatcgca ggaatgcccg
     3301 cacgccggag agctcacgcg cagctgaaga aggaccaagg cctctttggc gacggtcggc
     3361 aagaaaggct ctgagatcag cctgcccgag attgttgagt gtagcggcgc tcacggactc
     3421 acccaggtag cggccaagga acgcgatcag ccggttggca gtcgcggcat aggctctgac
     3481 cgtgtgcggt gaactgcgcc gatcgtagcg aagatgctcg tgccagcgcg ctacaaacgc
     3541 gtgagcagga tcatcgacta agagtgcggg atcgtcagcc acttacggat catagccgca
     3601 aggcttcgtc caaggaacat caacagctcc gatccgtggc gagcatcgag actgagctcg
     3661 gcgcgctgtc caagcgcaag cagcccgcat ggcaagggag gctcacaatc gatgcgcacc
     3721 aatgcctcgg cgcgtatcag gtcgcatgct gggccaaaca agggatggcc gcgctcgacc
     3781 gttcgcattt cgaccccgtg aacgcggtca atcgtacgtt gcagaatggc cggatcaacc
     3841 agctgaaccc cgccgccgtc ggcgcgaaat ccttttccag caacgatgag tgacaaggca
     3901 accgcatcga tcccaagaac cagaggccat tcctgcgtca ca
//
LOCUS       DASRBJ010000225         2043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_588929,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000225 DASRBJ010000000
VERSION     DASRBJ010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_588929"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..720)
                     /locus_tag="VE968_06300"
     CDS             complement(<1..720)
                     /locus_tag="VE968_06300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51468.1"
                     /translation="MCLATAHAIANGSFPDPDDVMRLLEVRDWIGGQSWFDVTQYRLN
                     GPAGVPMHWSRLVDVPIAAVMLLARPFVGGDRAETIAIVVVPLVTLGIAMFLVHRIAL
                     KLMTSRAALAAVAATPFSLGAMKQMRPMRIDHHGWQIVLSLVGLIACFDQRPRRSGLV
                     AGTAMALWLNISLEGLPFAVAVGTIFAFEWLRKGTVQRLETFVAALAVSSILIFAGTH
                     LPSSWTTQKHDVVTLAYLAGFA"
     gene            complement(798..1178)
                     /locus_tag="VE968_06305"
     CDS             complement(798..1178)
                     /locus_tag="VE968_06305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011415406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HZU51469.1"
                     /translation="MLEPVYARYVAASAASLGVDFGLFMLLLSLGMPSAAAAAGGYVA
                     GIACHWLLSSRAVFVGRVADAGAGRQRQQAMFLGSALVGLAITSAIVGAGTHFGLDPR
                     LAKLAAILTSFQVTYLLRQKLVFS"
     gene            complement(1187..>2043)
                     /locus_tag="VE968_06310"
     CDS             complement(1187..>2043)
                     /locus_tag="VE968_06310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007686979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HZU51470.1"
                     /translation="GPGMMWEAARDFVVSKGNRVLMGHSLQQLSFDAKAGEWRVSART
                     TGGESLLINAAHVISSAPIAELLSRIYPLPASTMRAFDLRYRDFLTVALMIRSEDTFP
                     DNWIYIHDPKVKVGRIQNFRSWSPEMVPDPELACVGLEYFCFEGDGLWNSSDSELVEL
                     ATKEMHALGLCDPADVEGGVVVRQEKAYPVYDDSYRDNVAAIREDLEANFPTLHLVGR
                     NGMHRYNNQDHAMMTAMLTVRNIQAGHRAYDIWEVNEDAEYHEAGEEGAKAALSSERL
                     VPRQLKAA"
BASE COUNT          457 a          611 c          628 g          347 t
ORIGIN      
        1 tgcaaagccc gcaagatagg cgagcgtaac cacatcatgt ttttgggtcg tccagctcga
       61 cggcaagtgc gttccagcaa agataaggat gctcgaaacg gcgagagcgg cgacaaacgt
      121 ctcgagtctc tgaacggtgc ctttgcgaag ccattcgaat gcaaaaatgg tgcccacggc
      181 gacagcgaac ggcagacctt caagggagat gttgagccat aacgccatcg ctgttcccgc
      241 gaccagaccc gaacggcgcg ggcgctggtc gaagcaggcg atcaggccaa cgagcgacag
      301 cacgatctgc cagccgtgat ggtcgatgcg cattggccgc atctgcttca ttgcgccgag
      361 tgaaaatggc gtcgcagcaa ccgctgcaag ggccgctcgg ctcgtcatca gcttaagagc
      421 aatgcgatgc acgaggaaca tcgcgatccc gagcgtaaca agtgggacga cgacgatggc
      481 gatcgtttcg gcgcggtccc ctccaacaaa gggccgggcg agaagcatga ccgccgcaat
      541 cggtacatcg accagccgcg accagtgcat cggaacgccg gcaggaccat tgagccgata
      601 ttgggtgaca tcgaaccagc tctggccacc gatccagtcg cggacctcga ggagacgcat
      661 gacgtcgtcc ggatccggga acgacccgtt ggcaattgcg tgcgcagtcg cgaggcacat
      721 gaacgcacat gcgatcaacc aaatggcgat tggagcgaaa aagccagagc gttcgcccgc
      781 gatggtggaa gcagcggtca tgagaacact agtttctggc gaaggaggta agtcacctgg
      841 aagctcgtga ggatcgcggc gagtttcgcg agccgcggat cgagaccgaa gtgggttcca
      901 gcgccgacta ttgccgaagt gatggcaagc cccacgagcg cggagccgag gaacatcgcc
      961 tgctgccgct ggcgacccgc gccggcatcg gcgacccgtc cgacgaagac ggcacggctc
     1021 gagagaagcc agtggcatgc aatgcccgca acatacccac cagccgccgc cgctgctgag
     1081 ggcatgccta gcgagagcag tagcatgaac aagccgaagt cgacgccaag cgaagcagcg
     1141 cttgccgcga catagcgggc gtagacaggt tcgagcatgc gctttctcac gctgccttta
     1201 gctgccgagg cacgaggcgt tcggagctca gcgccgcctt tgcaccctct tcgccggcct
     1261 cgtgatattc cgcgtcctca ttcacttccc agatgtcgta ggcgcgatga ccagcctgga
     1321 tgttgcgaac ggtcagcatc gccgtcatca tcgcatggtc ctggttgttg tagcggtgca
     1381 tgccgttacg gcccacgaga tgtagcgtcg ggaagttagc ctcgagatct tcgcgaattg
     1441 ccgcgacatt gtcgcggtag gaatcgtcgt aaaccgggta cgccttctcc tgtcgaacaa
     1501 cgacaccgcc ctcgacgtcg gcgggatcgc aaagaccaag ggcgtgcatt tccttggtgg
     1561 cgagctccac gagttcagaa tcgctggaat tccacaaccc gtcgccttcg aagcaaaaat
     1621 actcaagccc aacgcaggca agctcgggat cggggaccat ttcgggcgac cagctgcgga
     1681 aattctgaat gcgcccaact ttcactttgg gatcatgaat gtagatccaa ttgtctggga
     1741 acgtgtcttc cgagcggatc atcagcgcga cggtcagaaa atcgcgatag cgaagatcga
     1801 acgcgcgcat ggtcgaggcg ggcaggggat agatcctgct caagagttcc gcgatcggcg
     1861 cggaggagat cacgtgcgcg gcattgatca acaggctttc accgcccgtc gttcgcgcac
     1921 tgacacgcca ctcgccggcc ttggcgtcga acgaaagctg ttgcaggctg tggcccatga
     1981 ggacgcgatt gcccttggag accacgaaat cacgggctgc ttcccacatc atccccggcc
     2041 cac
//
LOCUS       DASRBJ010000226         6721 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_126038,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000226 DASRBJ010000000
VERSION     DASRBJ010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6721
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126038"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            78..341
                     /locus_tag="VE968_06315"
     CDS             78..341
                     /locus_tag="VE968_06315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51471.1"
                     /translation="MNITTDPNLWAICALVFVLGLLIGIFLTAGGRRKWRERYNSEVS
                     RRKEIEAERDRRAKEWDEKEKEWRERDSLRAAAARSPSDDRAP"
     gene            complement(374..2503)
                     /gene="glyS"
                     /locus_tag="VE968_06320"
     CDS             complement(374..2503)
                     /gene="glyS"
                     /locus_tag="VE968_06320"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014076056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009345 - glycine-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HZU51472.1"
                     /translation="MADFLLELLSEEIPARMQSKARNDLARIVAECTAEAGLQTGVID
                     AFSTPRRLVLIVRDVAAASEGSREELKGPRTSAPASAVEGFLRKTGLQREQLEDRDGV
                     YFAVVERTGRDARDILADTITRIVTNFPWSKSMRWGVGSLRWVRPLHGIVAMLGEDLV
                     PVEIEGISSGAATVGHRFHHPGPITIGSAADYLEKLRACHVIVDQEEREQLIRQGSSA
                     LAAAAGLTLLDDEALVVENAGLTEWPVPILGTFDPEFLDVPREVIVLTMRTNQKYFAC
                     TNDEGLLAPSFVSIANVAAQDGGEAIAHGNSRVLAARLSDARFFWEQDVKIPLEEAAK
                     KLSQIIFHEKLGTIADKVERVAKLARFLVQRGIIEADIDEVERAARLAKADLVTGMVG
                     EFPELQGIIGGYIAAAQGEPRAIADAIREQYKPAGQGDEVPTAPVSIAIALADKLDTL
                     VGFFQVGEKPTGSKDPFALRRAALGILQIIIANELRVSMRELITAAAHPRGADAGREI
                     AGFLIERLKVQQRDSGIRHDMIDAVVAVEKDGDNVRMVRRVEALQKFIDTEDGGNLLT
                     AYKRAANILKKEKWTGPAVMSSRAEQGIPQTGEEDPLVLVEEPGLKEAVAEMASGQAG
                     ADLPAEKALITALDHAEPLASAAVDAEDFTAAMAALASLRGPIDTFFDEVTVNDTDAQ
                     KRERRLNLLLRFRDAVNRVADFSRIEA"
     gene            complement(2503..3354)
                     /locus_tag="VE968_06325"
     CDS             complement(2503..3354)
                     /locus_tag="VE968_06325"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HZU51473.1"
                     /translation="MSLSFQDLILTLHHYWSRQGCVILQPYDMQVGAGTFHPATVLRA
                     LGPDSWRAAYVQPCRRPTDGRYGENPNRLGHYYQYQVVLKPSPDSLQELYLGSLEEIG
                     IDPLKHDIRFVEDDWESPTLGAWGLGWEVWCDGMEVTQFTYFQQVGGFECRPVTGELT
                     YGLERLAMYIQGVENVFDLRFNDVGVTYRDIFLENEREGSEYNFEVANTDRLFEAFRD
                     AVAECELCIERRLPIPAYEQAIAASHVFNMLQARGVISVTERQAYIGRVRDLAKAACG
                     AWLERAA"
     gene            3479..4378
                     /locus_tag="VE968_06330"
     CDS             3479..4378
                     /locus_tag="VE968_06330"
                     /inference="COORDINATES: protein motif:HMM:NF014066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HZU51474.1"
                     /translation="MLNKLFRRISAAVSLSILAVSSAASARAPEIARPALWEVSDPDS
                     TIYLFGTIHLLPENLKWRTASFNRAVDAAQQLVVETIVDQQHPQEIVAAEASLGFKQG
                     LPPIAQRVPPSKVAKLRAAIAKSGAPEKAFDQMKTWLAAITLLSVQFKDMGLKGKDGP
                     EEILRQQFLAAHKPIGELETNVEQFSYFDRMSEKAQRELLEGALEPQGSTDKEFSGML
                     ASWSKGDVKGIALTFNRELSQSSEIRKLLLQQRNANWAKWIEQRMGQPGTILVAVGAG
                     HLAGKDSVVEKLRSDGYNVRRLQ"
     gene            4565..5368
                     /locus_tag="VE968_06335"
     CDS             4565..5368
                     /locus_tag="VE968_06335"
                     /inference="COORDINATES: protein motif:HMM:NF014066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HZU51475.1"
                     /translation="MVNLLIAAALASATPVPPPSSTSTAEPALFVVRNAQTTIYIFGT
                     FHALDGKSQWFGRKIRAAFEDSGELVLETVIPEQPTNAPRPAAVLTPLPITPSASFLA
                     TTRMAINAGRAQGMQVDNGADMVLRHVAECEGKQVEGLETLQLQINMFNQIPPSSSPP
                     RDIAAPSRIETTTQIESLSKAMADLQSAWKRGDQSVFVKMLSELKAASPKTYQMMFTE
                     RNARWADWVRARMQTPGTVFVAVGAGHLAGPDSLLVRLAERGIPSARVN"
     gene            5471..6133
                     /locus_tag="VE968_06340"
     CDS             5471..6133
                     /locus_tag="VE968_06340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HZU51476.1"
                     /translation="MSEQLTLPAEARDRAGKGASRALRREGRVPAVVYGEKTEPFSIH
                     VEEKLLSKMLSSGHFMNSVVMIDVAGKATRTLPKAVDFHPVTSRPIHVDFLRISEHTQ
                     VHVAVPVRFDKEELAPGLKRGGVLNVVQHELEIVCDAASIPDEIHVSLEGLEIGDSIH
                     ITQLKLPDGVLPANKDEDFTIATIVAPSAMKSEEEEAAPAGEVPTVAGGEASEADEDA
                     QG"
     gene            6226..>6721
                     /gene="pth"
                     /locus_tag="VE968_06345"
     CDS             6226..>6721
                     /gene="pth"
                     /locus_tag="VE968_06345"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019371087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HZU51477.1"
                     /translation="MEIWVGLGNPGARYALHRHNVGFMAVDIIAEVHGFSSWSKKFRS
                     LVSEGRIGPHRILLLKPQTFMNDSGDAVQQALGFYRLGLEQLTVFHDELDLAPFKVKV
                     KIGGGTAGHNGLRSIDAALGPDFRRVRIGIGHPGPGRKDLVTPHVLGNYAKGEMEELS
                     DLLAA"
BASE COUNT         1399 a         2006 c         2004 g         1312 t
ORIGIN      
        1 ccacagctag aacatcggga acgcggcggc tcgctcaggc gtagtcgccg cagttccatt
       61 gccgttgggg aaccgagatg aacattacta ccgacccaaa tctgtgggcg atatgcgcac
      121 tggtgttcgt gcttggtctg ctgattggga tcttcctcac cgcaggcggc cggcgcaagt
      181 ggcgcgagcg atacaatagc gaagtcagcc gtcgtaaaga gatcgaggct gaacgcgatc
      241 gacgcgcaaa ggaatgggac gaaaaagaaa aagagtggcg cgaacgcgat tcgctgcgcg
      301 cggcagcggc aaggagccca tcggacgacc gagccccttg aggtcggctc aagcacggtc
      361 gtgtgcttct aaactaggct tcgatcctgc tgaaatccgc aacgcggttc acggcatccc
      421 ggaaacgcaa gagcaggttc aaacgacgct ctctcttctg agcgtcggtg tcgttgacgg
      481 tcacctcatc gaagaacgtg tcaatcggtc cgcgaagcga agcaagcgcc gccatagcgg
      541 cagtgaagtc ctcggcgtcg acagccgctg aagcgagcgg ttcggcatgg tcgagtgccg
      601 tgatcagcgc cttttcagcc ggcaagtcgg cgccggcctg ccccgatgcc atctctgcga
      661 cggcctcttt caacccgggc tcttcgacaa gtacaagcgg gtcctcctct ccagtctgcg
      721 gaatcccctg ctctgcccgg gaactcatga cggctgggcc cgtccatttc tctttcttga
      781 gtatgttcgc ggcacgcttg taggccgtga gcagattgcc gccatcctcg gtgtcgatga
      841 acttctgcaa ggcttcgacg cggcgcacca tccgcacatt gtcgccgtcc ttctcgacgg
      901 caacgacggc atcgatcatg tcgtggcgga ttccggaatc gcgctgctga actttcaacc
      961 gttcaatcaa gaacccggcg atctcacggc cagcatcggc gccgcgcgga tgtgcggctg
     1021 cagtgatgag ttcgcgcatc gagacgcgta gctcattggc aataatgatt tgcagaatac
     1081 cgagtgctgc gcggcgaaga gcgaatgggt ccttggaccc ggtgggcttt tcgccaacct
     1141 ggaagaagcc gacaagcgtg tcgagcttgt cggccaaggc gattgcgatg ctgaccggtg
     1201 ctgttggtac ctcatcaccc tgacctgccg gtttgtactg ctcgcgaatg gcatcggcga
     1261 tggcccgcgg ttctccttgg gcggctgcga tatagccgcc gataatacct tgcagttcgg
     1321 gaaattcgcc gaccatgccc gtgacgagat cggcctttgc gagccgtgcg gcacgctcga
     1381 cctcatcgat atcggcctcg atgatcccgc gctggacgag aaaccttgcg agctttgcaa
     1441 cccgttcaac cttgtcggca atcgttccga gcttctcatg gaatatgatc tgactgagct
     1501 tcttcgccgc ttcttcaagc ggaatcttga cgtcctgctc ccagaagaaa cgcgcgtcgg
     1561 aaaggcgcgc tgcaagaacg cgcgaattcc cgtgagcgat tgcctcgccg ccgtcttggg
     1621 cagcgacatt ggcgatgctg acgaatgaag gcgcaagcag cccctcgtca ttcgtgcagg
     1681 cgaaatattt ctggttcgtc cgcatggtga gaacgatcac ttcgcgagga acgtcgagga
     1741 attcagggtc gaacgtaccg agaattggga ccggccattc ggtcagtccc gcgttttcca
     1801 cgaccagcgc ttcgtcgtcg agaagtgtca gaccggctgc ggcagcaagc gcgcttgacc
     1861 cctgcctgat caactgctcg cgctcttcct ggtcgacgat gacgtggcag gctctgagct
     1921 tttcaagata atccgcagca ctgccaatgg tgatcggacc cggatgatga aatcggtgtc
     1981 cgaccgttgc ggcgcccgaa gaaatgcctt cgatctcgac tggaacgaga tcttcgccaa
     2041 gcattgcaac gatgccgtgc aatggacgaa cccatcgaag cgagccgacg ccccaacgca
     2101 tggacttgga ccaggggaaa ttcgtcacga tccgcgtgat cgtgtcggcg agaatgtcgc
     2161 gggcgtcgcg ccccgtccgc tcgaccacgg caaaatagac accatcgcgg tcttcaagct
     2221 gctcccgctg gaggccagtc ttgcgaagaa agccctcgac tgccgatgct ggtgctgacg
     2281 tccgcggccc tttcagctcc tcgcggctgc cttcgcttgc tgctgcgaca tcgcggacaa
     2341 tgagaacgag ccgccgtggc gtcgagaacg cgtcgatcac accggtttga agtccggctt
     2401 cagcggtgca ttcggcaacg atgcgcgcga gatcattgcg cgccttcgac tgcatgcgcg
     2461 cgggaatttc ttccgagagg agctcgagca gaaaatcggc catcaggccg cgcgctccag
     2521 ccacgctccg cacgcagcct tggctaggtc gcgcactcga ccgatatagg cctgccgctc
     2581 ggtgacactg atgacacccc tcgcctgaag catgttgaag acatggctcg ccgcgatcgc
     2641 ctgctcataa gccgggatcg gaagcctgcg ttcaatgcac agttcgcatt cggcgacggc
     2701 atcacgaaaa gcttcgaaca atcggtcggt attcgcgacc tcgaaattat attcggaccc
     2761 ttcgcgctca ttttcgagaa atatgtcgcg ataggtcact ccaacatcgt tgaaacgcag
     2821 gtcgaacaca ttttcaacgc cctggatgta cattgcgagc cgttcgaggc cgtaggtgag
     2881 ctcgcccgtg accggtcggc attcgaagcc gcccacctgc tggaagtagg tgaactgagt
     2941 aacttccatg ccatcgcacc agacctccca accaaggccc cacgcgccca gtgtcggact
     3001 ttcccaatcg tcttccacaa agcggatgtc gtgtttcagc ggatcgatgc caatttcttc
     3061 aaggcttcca agatagagtt cctgaaggct gtccgggctt ggtttcagaa ccacttggta
     3121 ctgataataa tggcccagcc gattgggatt ctcgccgtat cggccatcgg tcggtcggcg
     3181 acacggttgg acataagccg cccgccagga atccggccca agcgcgcgaa ggaccgtcgc
     3241 agggtggaat gtgccggctc caacctgcat gtcgtaaggc tgaagaatga cgcagccctg
     3301 cctgctccaa taatggtgca gcgtaaggat aaggtcctgg aagctcaggc tcaaaacaaa
     3361 acgtcccgca taagttgctt cggcgcgctt tggcggatgc atcgcacagg ggcaagacgg
     3421 ggttcagctt gcagccggta gccgcgcatg cgaaccggag gccggaggct gtgaaagaat
     3481 gctcaataaa ttgttccggc gcatcagtgc ggccgtttca ctctcaatcc tcgctgtcag
     3541 cagcgcggca tcagcgcgtg cacctgaaat agcacggcca gcgctctggg aagtgtctga
     3601 tccggattct accatctatc tcttcgggac aattcacttg cttccggaaa atttgaagtg
     3661 gcggacggct tcgttcaacc gcgccgtcga tgcggcacaa cagctggtgg tcgagacaat
     3721 cgtcgatcag cagcatccgc aggaaattgt cgcggcggaa gcatcgctcg ggttcaagca
     3781 ggggctgccg ccgatcgcgc agcgcgttcc accctcgaag gtcgcaaagc tacgcgctgc
     3841 cattgccaag agcggcgcgc cggaaaaagc gttcgaccag atgaagacct ggctcgcagc
     3901 gatcaccttg ctgtccgtac agttcaagga catgggactt aaaggtaaag acggtcccga
     3961 agagattctg aggcagcagt tccttgccgc acacaagccg attggcgaac tcgaaaccaa
     4021 cgtcgagcaa ttcagctatt tcgaccgaat gtccgagaag gcgcaacggg agcttcttga
     4081 gggtgcgctc gagcctcaag gaagcaccga caaggagttc agcggaatgc ttgcttcatg
     4141 gtcgaagggc gacgtcaagg gcatcgcgct cacgttcaac cgcgaactct cgcaatcgtc
     4201 cgagatccgg aagctactcc ttcagcaacg caacgcgaac tgggccaagt ggatcgaaca
     4261 acgaatgggc cagcctggaa cgatcctcgt tgccgtcggc gccggccatc tcgccggaaa
     4321 ggattccgtc gtcgagaaac taagatccga tggctataac gtccggcgcc ttcaatagtg
     4381 aagctatcca ccgataaatg ttcacctttc acgcatttgc gctagacttt tcttaagctg
     4441 tttatgacca tccttagcgg ggttatcggg ctggggggtc cgatgtgcaa acgcgtggcg
     4501 ggcgtgatgg tctgcccggt gtagcgcgtc gatcctgcaa gcgccgcctc gcggaggtgc
     4561 atggatggta aatcttctga tcgctgcagc gcttgcatcc gcgacgccgg tcccgccgcc
     4621 atcgtcaact tcgacagcgg aacctgccct ctttgtcgtg cgaaatgctc aaacgacgat
     4681 ctatatcttc gggacattcc acgcgctcga cgggaaatcg cagtggtttg gacgcaagat
     4741 ccgcgccgcg tttgaagatt cgggcgaact ggtcctggaa accgtcattc cggaacaacc
     4801 gacgaatgca ccgcgccccg cggctgttct cactccactg ccgatcaccc cgtctgcctc
     4861 gtttctcgca acgacgagaa tggcgatcaa tgctgggcgc gcgcagggca tgcaggtcga
     4921 caatggcgcc gacatggtcc tgcgtcacgt tgccgaatgc gaaggaaagc aagtggaggg
     4981 gctcgaaacg ctccagctcc agataaacat gttcaatcaa ataccgccaa gctccagtcc
     5041 accgcgagat attgccgcgc catcgcggat cgagacaacg acacagattg agagcttgtc
     5101 gaaagcgatg gccgacctgc agtctgcctg gaagcgcggt gaccagagcg tctttgtaaa
     5161 gatgctgagc gagctcaagg ccgcttcgcc caagacctat cagatgatgt tcaccgagcg
     5221 gaacgcgcga tgggccgatt gggtaagggc gcgaatgcag acgccaggca cggtcttcgt
     5281 ggcggttgga gcgggccacc ttgcgggacc ggacagcctg ctcgtgcgcc ttgccgaacg
     5341 cggcattccg tcagcgcggg tcaactaagc tcctctaact tgcttttcgg ggcgcttggc
     5401 actagtgggc gctctcctgc catggtcatc cctggaggcg tggcgggtca cttaaacgga
     5461 gcataaccaa atgagcgaac agctaacgct gcccgccgag gcgcgcgacc gggctggcaa
     5521 gggagcctcc cgtgcactgc ggcgcgaagg ccgggtccca gccgtggtct acggcgaaaa
     5581 gacggagcct ttctcgattc atgtcgagga gaagcttctt tccaagatgc tttcgagcgg
     5641 ccatttcatg aactcggtcg tgatgatcga tgtcgccgga aaggcaacgc gaacgctgcc
     5701 gaaggcggtg gattttcacc ccgtcacaag ccgtccgatc catgtcgatt tccttcgtat
     5761 ttccgagcac acgcaggtgc atgtcgccgt tccggtgcgc ttcgacaagg aagagctggc
     5821 gccaggattg aagcgtggcg gcgtgctgaa tgtggtccag cacgagctcg agatcgtttg
     5881 tgatgcggca agcattcccg acgagatcca tgtctccctc gaaggtctcg agatcggcga
     5941 ttcgatccac atcacgcagc tcaagctgcc ggacggcgtg ctgccggcca acaaggacga
     6001 agacttcacg atcgcgacca tcgttgctcc atcggcaatg aagtcggaag aggaggaggc
     6061 ggcgcccgct ggggaagtgc cgaccgtcgc cgggggcgaa gccagcgaag cggacgagga
     6121 cgcgcagggc tagcgcgaga accgcgcctt tcgcgacgca atggagccgc tcgccttccc
     6181 caggcgggcg gtttcttttt gtccgtgcgg cactaggagg aacgcatgga aatctgggtc
     6241 ggtctcggca atcccggcgc gcgatacgca ctccaccgcc acaacgtggg tttcatggcc
     6301 gtcgacatca ttgccgaggt ccatggcttt tcgtcctggt cgaagaagtt ccggagcctc
     6361 gtttccgaag gacggatcgg gccgcatcgg atcctcctcc tcaagccgca gactttcatg
     6421 aacgacagtg gcgacgcggt tcagcaggca cttggcttct acaggcttgg acttgaacag
     6481 ctgactgtct tccacgacga actcgacctc gcgcccttca aggtaaaggt gaaaatcggc
     6541 ggcggcaccg ccggtcacaa tggactacga tcaatcgatg cggcgctcgg cccggatttt
     6601 cgccgagtaa ggatcggcat tggccaccct ggtcccggca gaaaggacct cgttacgccc
     6661 catgtccttg ggaattacgc aaagggtgaa atggaagagc tgagtgacct actcgcggca
     6721 c
//
LOCUS       DASRBJ010000227         3055 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_487323,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000227 DASRBJ010000000
VERSION     DASRBJ010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3055
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487323"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..490
                     /locus_tag="VE968_06350"
     CDS             <1..490
                     /locus_tag="VE968_06350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013833109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZU51478.1"
                     /translation="ETKAARFYPVQQFELAIQINLIGTFRCIANCAFGMVDLDPVGPD
                     GERGVIINTASVAAEDGQIGQAAYSASKGGVLAMGLPIARDLMNDGIRVNTILPGVFK
                     TPMVAMMPPNVQDALGAQVPFPKRLGEAEEYARLACFLIENSYMNAAAVRLDGGIRMA
                     PR"
     gene            490..1317
                     /gene="cysQ"
                     /locus_tag="VE968_06355"
     CDS             490..1317
                     /gene="cysQ"
                     /locus_tag="VE968_06355"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014500582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HZU51479.1"
                     /translation="MNDHLRLLEALADAAREAGAAILEVVDRGFDVETKRDSSPVTEA
                     DRAAELVILAALARAAPGVPVIAEEEVAAGRIPAHGDTYFLVDPLDGTKEFVRGGDDY
                     TVNIGLIERDVPKLGVVFSPATRRLHAGCAEVGAWLEDQSGRREIRTRPRLSEVTAVA
                     SKSHLNQATIDYLNAAVGKCDYIAVGSSLKFCIVAEGKADIYPRASPTSEWDTAAGHA
                     ILLAAGGLVDGPDGRPLSYGKTAFLNRGFVATSGWQPPRLDTYLEPFSGGGDLPQGL"
     gene            1369..1444
                     /locus_tag="VE968_06360"
     tRNA            1369..1444
                     /locus_tag="VE968_06360"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1402..1404,aa:Val,seq:tac)
     gene            1563..1793
                     /locus_tag="VE968_06365"
     CDS             1563..1793
                     /locus_tag="VE968_06365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51480.1"
                     /translation="MRKWLFQYHGMRNGLRDMLRVGRDENDRNGLITADMANGADAGT
                     IPQAIIRRDEIGTSLLSQSNTSACDAALDAVS"
     gene            complement(2021..>3055)
                     /locus_tag="VE968_06370"
     CDS             complement(2021..>3055)
                     /locus_tag="VE968_06370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HZU51481.1"
                     /translation="RSPGTTIEDALSIYKRRAAGDLVAPDGKISVIIDRKDPLAAQGA
                     LTVSSAQEAIAAVDKIKAAGLWGAKFYTSMNPAWIAPAAAEAHRLGLHVHGHVPAGMR
                     PLDAVRAGYDEVTHINFIMMQAMPQDVVDKANTAARLEGPAKYGKDVDLDSPAMKAFY
                     AELSKRKIIIDPTLVVWEPLMTSDGRSISPEYAPFADVAPASVVRGWKISGYPLFGGL
                     TRDDFRKSFDKMVGLVTKLHEAGVRIVAGTDGYGLELVRELELYQKAGLTNAEALQTA
                     TIVPARMTGMDNRTGSVTRGKTADLILVDGDVSKNLGNLRHVDTVFLDGYRLDGEKLR
                     EASGLNGMPK"
BASE COUNT          573 a          911 c          957 g          614 t
ORIGIN      
        1 ggagaccaag gcagcgcgat tctatccggt gcagcaattc gaacttgcca tccaaatcaa
       61 ccttatcggg acgtttcggt gcatcgcgaa ttgcgcgttc gggatggttg atctcgatcc
      121 cgtgggaccg gacggggaaa ggggcgtgat catcaatacc gcgtctgtcg cagccgagga
      181 cgggcagatc ggtcaagcgg cttattcggc gtcgaagggc ggcgtactcg ccatgggctt
      241 gcccatcgcg cgtgacctca tgaatgacgg gattcgcgtg aacacgatcc tcccgggtgt
      301 cttcaagacg ccgatggtcg cgatgatgcc gccgaatgtc caggacgcac tcggagctca
      361 ggtgcccttt ccaaagcgtc tcggcgaggc ggaggaatat gctcggctcg catgcttcct
      421 catcgaaaac tcttacatga atgcagccgc ggtgcgtctt gacgggggta tccggatggc
      481 acctcgttaa tgaacgacca cctgcgcctc ctcgaggctt tggccgacgc cgcaagagag
      541 gcaggcgctg cgatcctcga ggtagtggat cgcggttttg atgtcgaaac gaagcgagat
      601 tcttcgcccg tgaccgaagc agaccgcgcg gctgagcttg ttatcctcgc cgcgcttgcg
      661 cgagcggccc cgggcgtgcc ggtcatcgcc gaggaagaag ttgccgctgg gcggatcccg
      721 gctcatggcg acacctattt cctcgtcgat cccctggatg ggacgaagga gttcgttcgc
      781 ggcggagacg attacaccgt gaacatcggc ctgattgaac gcgatgtgcc gaagcttggt
      841 gtcgtatttt cgccggcgac tcggcgtctc cacgcgggct gtgctgaggt gggagcctgg
      901 cttgaagatc agagtggacg acgcgagatc cgaacgcggc cgcgattgtc cgaagtcacg
      961 gccgtcgcgt cgaaatcgca tctcaaccag gcaacaatcg attacctgaa cgccgccgtc
     1021 ggcaagtgcg actacattgc ggtcgggtct tcgctcaagt tctgcatcgt cgcggaagga
     1081 aaggccgaca tttacccacg ggcctctcca acgagcgagt gggataccgc cgcagggcat
     1141 gccatcctcc tcgcggccgg cgggttggtc gacggtcctg acgggagacc attgagctac
     1201 ggcaagacgg cattcctgaa ccgagggttt gtcgcaacct cgggttggca gccgcctcgc
     1261 ctagatactt atctcgagcc gttctccggc ggcggtgact tgccccaagg cctttagcta
     1321 accggctggg ttgcagcccg gatgcttgcg tggcagtggc gagcgcacgg gcggttagct
     1381 cagttggtag agcatctcgt ttacaccgag agggtcggcg gttcgagccc gtcaccgccc
     1441 accagagaaa tgaaccgact tcacgcttat tgcgagaggg cgcttggttc caacgtaccg
     1501 tcccttggag acgcaacgaa gaccgtttgc accgcacggt tgatcgcccg aactaagccg
     1561 gcgtgcgtaa atggcttttc cagtatcacg gcatgaggaa cggtctgcgc gatatgctga
     1621 gggtcggccg tgatgaaaac gacaggaatg gtttgatcac ggcagatatg gcgaacggcg
     1681 ccgatgccgg aaccatcccc caggcgatca tccgccgtga tgagatcggg acatctctct
     1741 tgagccaatc gaatacctcg gcctgcgatg ccgctctcga tgccgtttcg taaccaagct
     1801 ccgcaagttc atgagcgacc ataattgcta tgagtgcttg gtcttcaatg attagagcgt
     1861 gcttcatgtg cctccgcatg ggcgggagca cgagctctca gccaccgaca gccgaaagta
     1921 ccggccgatg gtcgaagaag cttagcacaa cgagctattg tgaactacag tatcgttcct
     1981 gtgtttgatt gggccagttc agggcaccgc aattctgagc tcacttcggc atgccgttga
     2041 ggccactcgc ctcgcgcagc ttctctccat cgaggcgata gccgtcgagg aagacggtat
     2101 ccacatggcg cagattgccg agatttttcg agacatcgcc atccacgagg atcaggtcgg
     2161 ccgtcttgcc gcgcgtgacc gaaccggtgc ggttgtccat ccccgtcatt cgggcaggta
     2221 cgatcgtcgc cgtctgcagc gcctcggcat tggtgagccc ggccttctgg tagagctcga
     2281 gctcgcggac cagctcgagc ccgtagccat cggtaccggc gacgatgcgg acgccagcct
     2341 catggagctt ggtcacgagg ccgaccatct tgtcgaagct cttacggaaa tcatcgcggg
     2401 tgaggccgcc gaacagaggg tagccgctga tcttccaccc gcgcacgacc gatgccggag
     2461 cgacatcggc aaatggcgca tattcgggcg agatcgagcg gccgtcggag gtcatcaacg
     2521 gttcccaaac gaccagcgtc ggatcgatga tgatcttgcg ctttgaaagc tccgcgtaga
     2581 atgctttcat agccggggag tcgagatcga catctttgcc gtacttggcc ggaccctcga
     2641 gacgcgccgc ggtattggcc ttgtcgacga cgtcctgcgg catcgcctgc atcataatga
     2701 agttgatgtg cgtgacttcg tcatagcctg cgcgaaccgc gtccaacggc cgcatgccgg
     2761 caggcacatg cccgtggacg tggagcccca aacggtgtgc ctcggccgct gctggggcga
     2821 tccaagccgg gttcatcgac gtgtagaact tcgcgcccca cagtcctgct gccttgatct
     2881 tgtcgacggc ggcgatcgct tcctgggcgc tgctcacggt caatgcgccc tgcgcggcaa
     2941 gcgggtcctt ccggtcgatg atcacggaga tcttgccgtc cggtgcaacc aggtctccgg
     3001 cggcgcgtcg tttgtagatg ctgagcgcat cctcgatcgt cgtcccgggg cttcg
//
LOCUS       DASRBJ010000228         6929 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_632175,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000228 DASRBJ010000000
VERSION     DASRBJ010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6929)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6929)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6929
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_632175"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..701
                     /gene="pstB"
                     /locus_tag="VE968_06375"
     CDS             3..701
                     /gene="pstB"
                     /locus_tag="VE968_06375"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019371174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HZU51482.1"
                     /translation="MKAVNMDVPAKCVTAIIGPSGCGKSTLLRTINRIYELYPDQYAT
                     GEIMIDGRNVLDRKYPLADLRRLVGMVFQKPTPFPSSIWSNVGFALSYYERLSKSEIN
                     DRIEDALRQAALWDEVKDKLNQSALGLSGGQQQRLCIARTIATRPEILLLDEATSALD
                     PISTAKVEELIHELRERFTIVIVTHNMQQAARVSQRTAFFHLGELIEVGNTSEIFTNP
                     REQRTRDYITGRYG"
     gene            716..1405
                     /gene="phoU"
                     /locus_tag="VE968_06380"
     CDS             716..1405
                     /gene="phoU"
                     /locus_tag="VE968_06380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HZU51483.1"
                     /translation="MQQVAGHTLKAFDEDIERLRALISQMGGLAEHAIGEAMRCLTQR
                     DVEGAAEVVEGDKKLDVLEIETERRAVQLIALRAPMAGDLRDVVAALKISGVVERIGD
                     YAKNIAKRVPLLENVGKIEPISLLAEMARIATEMVHDVLDAFVERDAGAAIRVCERDS
                     AVDDFYDSIFRTLLTHMMENPQNIGQSAHLLFVAKNLERVGDHATNIAEMVYYAATGE
                     HMADRPGKSPR"
     gene            1410..2102
                     /gene="phoB"
                     /locus_tag="VE968_06385"
     CDS             1410..2102
                     /gene="phoB"
                     /locus_tag="VE968_06385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HZU51484.1"
                     /translation="MSNKRLLLVEDDRALADLVAFHFERSGYDVTRTGDGEEALILVD
                     EVKPDLILLDWMIEGISGIEVCRRLRRRATTANVPIVMLTARGEETDRIRGFETGADD
                     YVTKPFSPRELVARAGAVLRRVRPGLAGELLNYADVEMDVAAHRVRRDGQHVPLGPTE
                     FRLLKHFLEHPGRVFSRERLLDTVWSHDPDIDARTVDVHVRRLRQALNAGDRPDLIRT
                     VRSAGYSLDREQ"
     gene            complement(2211..3227)
                     /gene="pstS"
                     /locus_tag="VE968_06390"
     CDS             complement(2211..3227)
                     /gene="pstS"
                     /locus_tag="VE968_06390"
                     /inference="COORDINATES: protein motif:HMM:NF008171.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HZU51485.1"
                     /translation="MTSIFRSAALLAVPVCMFGTIAHATTITGAGSTFVYPVLSRWAS
                     DYKKAAGDEINYQSIGSGGGIAQIKAGTVDFGATDKPLGSDELAASGLAQFPVVIGGV
                     VPVINIPGARPGQVKMSGAVLADIYSGAIKTWNDPRIAKLNPGLHFPAKEITPVHRSD
                     GSGTTFNFTHYLSQVSPAWKAKFGEGTTVSWNGGIGGKGNEGVAGYVKQIPYSIGYVE
                     CAYVVQNKMAYALMQNSAGKFVAPNARSFAAAAATADWSHAKDFNLVMTNAPGANSYP
                     ITASTFVLMYKQPKNAAGTTAAKKFFGWALTKGQPQALSLDYVPLPTPLVKRIEGYVG
                     TNIR"
     gene            3546..4928
                     /locus_tag="VE968_06395"
     CDS             3546..4928
                     /locus_tag="VE968_06395"
                     /inference="COORDINATES: protein motif:HMM:NF019042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51486.1"
                     /translation="MKAYHRLAAGAALVGIAIAAAGPAEAKARKHAPIKKHAVARPDP
                     RDAEIKALEAKVDALTQRLDQQEAAAQAISQQAQTAQAAAVSAQSQATTALNQTQAAQ
                     AQVTKVVNEVPPLEKAIKTGWFANTTIGGKAFFNFSDIHQTSTALNGTKTDNAQNGTQ
                     AELKRFYFIVDHKFNDVFSANLTTDFRYNANGTSKDTLLYLKKAYVQAKFDPAFIVRV
                     GAADLPWIPFDENVYGFRFVENTLIDRTKFGASTDWGVHVLGSFADNLVSYQVSAIDG
                     QGYKTLARSSDTLDLEGRISVNPLKVLTFAVGGYTGKLGKSAANLPDTATPHTASRFD
                     ALAAYTDKRIRAGIEYFSATNWNNVTTVARDKANGWSTFGSFAFTPQVFAFARYDWEK
                     PSKDITPALKDHYFNVGLDYKPIAPLDFALVYKRERTSNGTLSTSNGVIGGPDYGTYD
                     EFGLFGQLAF"
     gene            5012..6046
                     /locus_tag="VE968_06400"
     CDS             5012..6046
                     /locus_tag="VE968_06400"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU51487.1"
                     /translation="MADAGQSATQSNVVGHDDRLRALIEAIAEPCVIVEGTVVGLANA
                     PARRMLGRIEGRDIRLVIRHPQALELILAHRSGSIDVTGVVEPGQSWRLIMRSLWPDA
                     VLLRMIDRSSSVSAEKMRVDFVANASHELRTPLSTVVGYAETLAEETDLPGELRSNFG
                     RTILDEARRMLRIIEDLMSLSRIEADRFLVPNERVQMSEIVTSAVAAQARGKLACEIK
                     VKVDGDLPAIRGDRAQLAQVLDNLISNALRYGCDSAGAPIEIMATKNDDWIIVSVADH
                     GPGIPREHLPRVTERFYRVDAARSRESGGTGLGLAIVKHIIERHKGSLDIRSTVGVGT
                     VVTVRLPIAT"
     gene            complement(6201..>6929)
                     /locus_tag="VE968_06405"
     CDS             complement(6201..>6929)
                     /locus_tag="VE968_06405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004210477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HZU51488.1"
                     /translation="DDVEVIAIAANGREAIRQIKTHKPDLVFLDIQMPGFDGFSVIQG
                     LMDVEPPLFVFVTAYSEHALRAFDAQAVDYLMKPVDEDRLAATMDRVRQRLAERRSAE
                     ESERLKEALAEHAPEAAEELAESTTDAPAANRYEKMINIKDQGQIFRVDVDTIERIDA
                     AGDYMCIQTGDNTLILRETMKDLEKRLDPRRFQRVHRSTIVNLDLVRQVKPHTNGECF
                     LVLDSGAQVKVSRSYRDVVARFVH"
BASE COUNT         1449 a         2014 c         2077 g         1389 t
ORIGIN      
        1 ccttgaaagc cgtcaacatg gacgtgcccg ccaagtgcgt gacagcaatc atcggtccgt
       61 caggctgtgg aaaatccacc ttgctgcgaa cgatcaaccg gatctacgaa ctttatcccg
      121 accagtatgc gacgggcgag atcatgatcg acggacgcaa tgtcctcgat cgcaaatatc
      181 cgctcgcgga cctgcgtcgg ctggttggaa tggtattcca gaagccgaca ccctttccat
      241 cctcgatttg gagcaatgtc ggctttgctc tttcttatta tgagcgactg tcgaagtcgg
      301 aaatcaacga ccggatcgaa gatgcgctgc ggcaggccgc cttgtgggac gaggtcaagg
      361 acaagctcaa ccaaagcgcg cttggtctct cgggcgggca gcagcagcgc ctgtgcatcg
      421 cccgaacgat tgcaacgcgt ccggagattc tgttgcttga cgaagcgacg tcggcgctgg
      481 atccaatctc aacggcgaag gtcgaggaac tgatccacga gcttcgcgag cggttcacga
      541 tcgtgatcgt gacgcacaat atgcagcagg cggcccgcgt ttcgcagcgt acagcctttt
      601 tccacctcgg cgagctgatc gaggtcggca acacgagcga gattttcacc aacccccgcg
      661 agcagcgcac gcgcgattat atcaccggcc gctacggctg atcggaggca cgagaatgca
      721 gcaggttgcg ggacatacgc ttaaggcgtt cgacgaagac atcgagcgac tgcgcgcgct
      781 catcagtcag atgggcggcc ttgccgaaca tgcaatcggc gaggcgatgc ggtgcttgac
      841 gcagcgcgac gtcgaaggtg cggccgaggt cgtcgagggc gacaagaaac tcgacgtact
      901 tgaaatcgag accgagcgcc gtgcggtaca gctgatagcg cttcgtgcac cgatggcggg
      961 cgatctcagg gacgtcgtcg ccgccttgaa gatttcgggc gtcgtcgagc ggatcggtga
     1021 ttatgccaag aatatcgcga agcgtgtgcc gcttctcgaa aatgtcggca agattgagcc
     1081 gatttcgctc ctcgctgaaa tggcccgaat tgctaccgag atggtgcacg atgttctgga
     1141 tgccttcgtc gaaagagacg ccggcgccgc gatccgtgtc tgcgaacggg actcggcagt
     1201 cgatgacttt tatgattcga tctttcgaac gctgcttaca cacatgatgg aaaatccgca
     1261 gaacatcggg cagtccgcgc atctgctatt tgttgcgaag aacctcgagc gcgtcggcga
     1321 tcatgcgacg aacatcgccg agatggtcta ttatgcagcg acaggcgagc acatggccga
     1381 tcgcccaggc aagtcaccga ggtaatgaga tgtcgaacaa acggctcctc ctcgtcgaag
     1441 atgaccgtgc tctcgcggat cttgtcgcat tccatttcga acgctcaggt tatgatgtaa
     1501 cgcggactgg agacggtgag gaggcactga tcctcgtcga cgaggtcaaa cccgacctca
     1561 ttcttctcga ttggatgatc gagggcatta gcgggatcga agtttgtcgt cggctccggc
     1621 gtcgcgcgac cactgcgaac gtgccgatcg tgatgcttac agcgcgtggc gaggaaaccg
     1681 accgcattcg cggcttcgag accggcgccg atgattatgt caccaagccg ttcagtcctc
     1741 gcgagctcgt tgctcgtgcc ggcgccgttc ttcgtcgggt gagacccgga cttgctggag
     1801 aactactcaa ttatgcggat gtggagatgg acgttgcagc gcatcgggtg cggcgcgatg
     1861 gacagcatgt accgctcggt cccaccgaat ttcgcttgtt gaagcatttt ctcgagcatc
     1921 caggacgagt cttctcgcgc gagcgtttgc tcgacaccgt gtggagccat gatccggaca
     1981 tcgatgcccg caccgtcgac gtccacgttc ggcgcctgag gcaggccctt aacgccggag
     2041 accggcctga cttgatacgg accgttcgtt cggcgggcta ttcgctcgat cgcgaacaat
     2101 aataataatc gtcgctcaaa cgcgcactct attcgacgca cggaacagca aaaagaaaac
     2161 ggcccgtccg gcggacgggc cgttcctttg ttgcccctta gttcttgaga tcagcggatg
     2221 ttcgttccga catatccctc gatgcgcttc acgaggggtg tgggaagcgg aacataatca
     2281 aggctaagcg cctgcggctg gccttttgtg agtgcccacc cgaagaattt ctttgcggct
     2341 gtcgttcccg cggcattttt cggctgcttg tacattagta caaaggttga ggcggtgatt
     2401 gggtaagagt tcgcaccggg tgcattggtc atgacgaggt tgaagtcctt ggcatgagac
     2461 cagtcggcgg ttgcggccgc tgccgcgaac gaccgcgcgt tgggcgcgac gaattttccg
     2521 gccgaattct gcatcagcgc gtatgccatc ttgttctgga cgacataggc acattcaaca
     2581 tagccgatcg agtaggggat ctgcttgacg tagcccgcaa cgccctcgtt gcccttgccg
     2641 ccgatcccgc cattccacga aacagttgtt ccttcgccga acttagcttt ccaagccggg
     2701 ctcacttgac tgagataatg ggtgaagttg aaagtggtcc ccgagccatc ggaccggtga
     2761 accggcgtga tctccttcgc cgggaagtgc agccctggat taagctttgc aatcctcgga
     2821 tcattccacg tcttgatcgc gcccgaatag atgtcggcga ggactgcgcc gctcatcttg
     2881 acctggcccg gacgcgcgcc agggatattg atcacgggaa ccacgcctcc gatcacaacc
     2941 ggaaattgcg cgagacccga tgcggcgagc tcgtcgctgc caagtggctt gtccgtcgcg
     3001 ccgaagtcga ccgttcctgc cttgatctgt gcgattccgc cgccggaacc aatcgactga
     3061 tagttgatct cgtcgcctgc ggctttcttg taatcggacg cccagcgcga aagcaccggg
     3121 tacacaaagg tcgatccagc gccggtgatg gtggttgcat gagcgatcgt gccaaacatg
     3181 caaacgggca ccgcaagaag tgcggcagaa cggaaaatgc tagtcattgt ggataccccc
     3241 ggcagcaaaa atcgaagtcc cgatggcatc actcgccatc agttcgccgc taggctcggg
     3301 gcatgacagc tgtgtgactc gaccattgcc gtttggttgc cgacagcgag ttgtagggaa
     3361 gagagcgatg ttgccgctgg tggggacgcg aaaatctaca gacagtccaa aaaattgtca
     3421 taaatctgac tggcgccagt cacagaaaca tcaacgttgc actactagcg gcggactcga
     3481 gtttgaggac tcgcgaaaca gaggtgcccc agtggggggc gaagcatgag aagggggtca
     3541 cccaaatgaa agcctatcat cggctcgctg ccggagccgc acttgttggg atcgcgatcg
     3601 cagcagcggg accggccgag gcaaaagcac gcaagcacgc gcccattaag aagcatgcgg
     3661 tcgcgcgtcc ggacccgcgc gacgcggaaa tcaaagcctt ggaagcgaaa gtcgacgcgc
     3721 tgacgcagcg gctcgaccag caggaggcgg ccgcccaagc aatctctcaa caggcgcaga
     3781 ccgctcaggc tgcggccgtt tcggcgcagt cacaggcaac gacggctcta aaccagacgc
     3841 aggcggctca agcccaggtc acgaaggtcg tgaacgaggt tccaccgctc gagaaggcga
     3901 tcaagaccgg ctggtttgcg aatacgacaa ttgggggcaa ggcctttttc aatttcagcg
     3961 atatccatca gacctcgacc gcgctgaacg gcaccaagac ggacaatgcc cagaatggca
     4021 cgcaggccga gctcaagcgg ttctatttca tcgttgatca caagttcaac gacgtcttct
     4081 cggcaaacct cacgaccgat tttcgctata atgccaacgg aacaagcaag gacacgctcc
     4141 tctacctcaa gaaagcctat gtgcaggcga agttcgatcc ggcgttcatc gtccgcgtcg
     4201 gtgcagcgga cctgccctgg attcccttcg acgagaatgt ttacggcttc cgcttcgtcg
     4261 agaatacgct catcgaccgg acgaagttcg gtgcttcgac cgactggggg gtgcacgtcc
     4321 tcggcagctt tgcggacaac ctagtcagct atcaggtctc cgcgatcgat ggccaaggct
     4381 ataagacgct cgcgcgcagc tcagatacgc tcgaccttga aggacgtatc agcgtcaatc
     4441 ccttgaaggt tctgacattt gcggtcggcg gctataccgg caagctgggc aagagcgccg
     4501 ccaacctgcc cgacacggcg acgccgcaca cggcgagccg tttcgacgcg ctcgcagcct
     4561 ataccgacaa gcggatccgt gccgggatcg aatatttctc ggcgacgaac tggaacaatg
     4621 taacgacagt tgctcgggac aaggcaaacg gctggtcaac tttcggatcg ttcgcgttca
     4681 caccgcaggt ctttgcgttc gcccgatacg actgggagaa gccgagcaag gacatcacgc
     4741 ccgcgcttaa ggaccattat ttcaacgtgg gcctcgacta taagccaatc gcgccgctgg
     4801 atttcgcgct cgtctacaaa cgcgagcgga ccagcaatgg cacgctttcg acttccaacg
     4861 gagtaatcgg cggccccgat tacgggacct acgatgagtt tggccttttc ggtcagctcg
     4921 ccttctgagc agttttcggc cttttctccc ctcgaggccg aaggatggcg cccctcgtcg
     4981 taaagacgag gggcgcgtat ccccgaccaa gatggctgat gcgggacaat cggctacaca
     5041 gtccaatgtg gtcggacatg atgacaggtt gcgtgcgtta atcgaggcga tcgccgaacc
     5101 gtgtgtcatc gtcgaaggaa ccgtcgttgg gctcgccaat gcgcccgccc gccggatgct
     5161 gggtcggatt gaaggacgcg atattcgcct ggtgatccgc cacccgcagg cgctggaact
     5221 tatcctcgcg cacaggagtg gctcaatcga tgtgactggc gtcgtcgaac ccggacaatc
     5281 ctggcgactg attatgcgca gcctctggcc ggacgcagtg ctgctgcgca tgatcgaccg
     5341 gtccagttcg gtgtcggccg aaaagatgcg agtcgatttt gttgcaaatg ccagccacga
     5401 gctcagaacg cccctgtcca ccgtcgtagg ctatgccgaa actcttgcgg aagagacgga
     5461 tcttccgggc gagctgcgct cgaatttcgg ccgcaccata ttggatgagg cgaggcgcat
     5521 gctgcgcatc atcgaagacc tgatgagcct ttcgcgcatc gaggcggacc gctttcttgt
     5581 tccgaatgaa cgcgtccaga tgagtgaaat cgtgacgagc gccgtcgctg cgcaggcgcg
     5641 tggcaaacta gcatgcgaga tcaaggtgaa ggtcgatggc gaccttccgg cgatccgtgg
     5701 ggatcgagct cagctcgcac aggttctcga caatctcatc agcaatgcgc ttcgctacgg
     5761 gtgcgacagc gcgggcgccc ccatcgaaat aatggcgacg aaaaacgatg attggatcat
     5821 cgtcagtgtc gcggaccatg ggccaggaat ccctcgtgag cacctgcccc gggtaaccga
     5881 acgcttctac cgtgttgatg cagcgcgcag ccgcgaatcc ggcggaacgg ggcttggcct
     5941 cgcgatcgtc aagcacatca tcgagcgcca caagggctca ctcgacattc gaagcacggt
     6001 tggagtggga acggtcgtaa ccgtccggct gccgatcgct acgtagttac actggtggaa
     6061 tgatactctg ttaaacgagc gttaactctc ttatggcgca ggggcgtcgg ggtttggtga
     6121 tcgacctccc ggccccggcg tcaaaggggg gctcgttctc gttttgaacg ggggcgggcc
     6181 cttctttcct ttcgcaagcg ctagtgcacg aagcgcgcga cgacgtcgcg gtagctgcgc
     6241 gagactttca cttgagcacc tgagtcaagc acgaggaaac attcgccatt cgtatgcggc
     6301 tttacctgcc gcacgaggtc gagattgacg atcgtcgacc ggtgaacgcg ctggaatcgc
     6361 cggggatcga gtcttttctc gagatctttc atcgtctcgc gcaagatgag tgtattatcg
     6421 ccggtctgga tgcacatgta atcacccgcc gcgtcgatgc gctcgatcgt gtcgacatcg
     6481 acccggaaaa tctgtccctg gtctttgatg ttgatcatct tctcataccg gttcgccgcc
     6541 ggcgcgtcgg tcgtgctctc ggccaattcc tcggcagcct ccggcgcatg ctcggcaagc
     6601 gcctccttca ggcgctccga ctcttcggcg ctccgccgtt cagcgaggcg ctggcgaacg
     6661 cggtccatgg ttgcagcgag acgatcctcg tcgactggtt tcatcaggta atcgacggcc
     6721 tgcgcatcga acgcccgcag cgcatgttcg ctataggccg tgacgaacac gaaaagggga
     6781 ggctcaacgt ccatcagccc ctgaataacg gagaagccgt cgaagccggg catctggatg
     6841 tcgaggaaca cgaggtcagg cttgtgggtc ttgatctggc gaatggcctc tcggccgtta
     6901 gcggcgatgg cgatcacctc gacatcgtc
//
LOCUS       DASRBJ010000229         2713 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_82379,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000229 DASRBJ010000000
VERSION     DASRBJ010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2713
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82379"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..944)
                     /locus_tag="VE968_06410"
     CDS             complement(<1..944)
                     /locus_tag="VE968_06410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010160749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan halogenase family protein"
                     /protein_id="HZU51489.1"
                     /translation="MNENNIREVIIVGGGTAGWMAAAALSRYLNNGYTTVTLIESEQI
                     GTIGVGEATIPPLISFNELLGINENDFVRATQATFKLGIEFVNWGRLGDRYFHAFGEL
                     GKDFQGLPFHQLYLRERSRRPMPEITSWSSSAAAAVRGKFARPGQKAQFPLDQLRYAF
                     HLDATLYARFLRAFAERHGVRRIEGKIVDVKLRSNDGFVEAVTLANGQSIAGELFLDC
                     SGFRGLLIEEALQTGYEEWTQWLPCDRAIAAPCRYSGNPDPFTRATAHRSGWQWRIPL
                     QHRMGNGHVYCSSFISDEEAERVLVSNLEGELLDSPRRL"
     gene            complement(941..2389)
                     /locus_tag="VE968_06415"
     CDS             complement(941..2389)
                     /locus_tag="VE968_06415"
                     /inference="COORDINATES: protein motif:HMM:NF016693.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 7-halogenase"
                     /protein_id="HZU51490.1"
                     /translation="MSEGSISKVVVVGGGLTAWTAAATLKRRIPVLDVQLVKTEPAPD
                     ALAEQIISTLPSIATFHQSLGLTDADTVERAASGIRLATMLEGFAEGQPDFVHSYDRC
                     GVPLNGVPFHQLWLRECERGKLPAFDRFSPAAEIARSGKPPQGLARASAFGLQLDLER
                     YGDMMRALAHHVGVRVRDSLFRNVALRTDDGFVDKVILADGDAVAGDLFVDCTGPAAL
                     LHREMKSPFTDWSRWLPCDQVAFKRVESDSSAELMDRVTALPFGWKWRSSSPRSGSVG
                     VVYSSSFAEPDIGAEVADFSKVAIRQGRKTQFWVRNCVAIGDAAVTVEPLEWTNLHLV
                     QGQLDRLITMMPGRDCAKVEIAQFNRETIAQADRVRDFVAVHYLCSSRPERFWKDAAS
                     VAPPASLEHSLSLFKERGLLPNYPEESFSRDSWLTILLGLGVRPRRIDPLASLVPVTE
                     AAQAFASMSQSLKTFALSAGSPVPELNPHGIR"
     gene            complement(2386..>2713)
                     /locus_tag="VE968_06420"
     CDS             complement(2386..>2713)
                     /locus_tag="VE968_06420"
                     /inference="COORDINATES: protein motif:HMM:NF016693.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tryptophan 7-halogenase"
                     /protein_id="HZU51491.1"
                     /translation="TERDSSPFWRHVRDMEVPDTLREKMDLFRRRGRVVKHTEGIFLD
                     GSWVGVLMGQGVVPNGHDLRAGVPPTGALKRALHSLRQEVFAAASEMPDHRELIERYC
                     PMAEAA"
BASE COUNT          574 a          811 c          800 g          528 t
ORIGIN      
        1 agacgtcgtg ggctgtccaa cagttcacct tcgagatttg aaacgagcac tcgctccgcc
       61 tcctcatccg agatgaagct gctgcaataa acgtggccgt tccccatcct gtgctgaagt
      121 gggatgcgcc actgccaccc ggatcgatga gcagtggcgc gcgtgaacgg gtcgggattg
      181 ccgctatagc ggcacggcgc agcaattgcc cgatcgcatg ggagccactg cgtccactct
      241 tcgtagcccg tctgcagcgc ttcctcgatg agcagcccgc gaaatcccga acagtcgagg
      301 aaaagttcgc ccgcaatact ctgcccgttc gcaagtgtta ccgcctcgac gaatccatcg
      361 ttgctacgaa gttttacgtc gacgatcttc ccctcgatcc ggcgcacgcc atgcctttcg
      421 gcaaaggcgc ggagaaaacg ggcgtaaagg gttgcgtcga ggtgaaaagc gtagcgaagc
      481 tgatcgaggg gaaactgggc cttctgaccc ggacgtgcga acttgcctcg aaccgcagcg
      541 gcggcgctgc ttgaccatga ggtaatctcg ggcatcggcc ggcgcgagcg ctcgcgaaga
      601 taaagctggt gaaatggcag tccctgaaag tctttgccta gctcgccgaa cgcgtggaag
      661 tagcgatcgc cgagacgccc ccagtttacg aattcaatcc cgagcttgaa agttgcctga
      721 gtcgccctga caaagtcatt ctcgttgatt ccgaggagct cattgaagct gataaggggc
      781 gggatcgtcg cttccccaac gccaatcgtt ccgatctgtt cggactcgat cagggtaact
      841 gtggtgtagc cgttgttgag gtaacgggac aaagccgccg cggccatcca gcccgcggtg
      901 ccgccaccaa cgatgatgac ttcgcgaata ttattttcgt tcatcgtatt ccgtgcgggt
      961 tgagttcagg aacgggcgag ccggcgctca atgcgaaggt tttcagggac tggctcatcg
     1021 aggcgaaagc ttgcgcggct tcggtgacgg gcacaagcga cgcaagtgga tcaatgcgac
     1081 gcggccgaac cccgagccct aggagaatgg tgagccagct gtcgcgggag aagctttctt
     1141 caggatagtt gggaagcaat cctcgttcct tgaacagcga aaggctgtgt tcgagagacg
     1201 ccgggggcgc aactgaagca gcatccttcc agaaacgctc gggtcgcgac gaacaaaggt
     1261 aatgcactgc aacgaaatca cggacgcgat ccgcctgcgc aatagtctcg cgattgaact
     1321 gtgcaatttc caccttggcg cagtcgcgac cgggcatcat ggtgatcaga cgatcaagct
     1381 gaccctgcac gaggtgcagg ttggtccact ccaagggttc gaccgttact gcagcgtcgc
     1441 cgatcgcgac gcagttgcgc acccaaaact gggtcttgcg cccttgacgt atcgcgacct
     1501 tgctgaagtc agcgacttcc gcgccgatgt ccggttcggc gaagctcgac gaataaacca
     1561 cgcccaccga tccagacctc ggcgaggatg aacgccattt ccagccgaac gggagcgccg
     1621 ttacgcgatc catcagctcg gccgatgagt cgctctccac gcgtttgaac gcaacttggt
     1681 cgcatggcag ccacctggac caatcggtga aggggctttt catctctcgg tgcagcagtg
     1741 ccgctggtcc agtgcagtcg acaaagaggt cgccagcgac tgcgtcgccg tccgcgagaa
     1801 tgaccttgtc gacgaagccg tcgtccgtgc gcagtgccac attgcgaaaa agtgagtctc
     1861 gaacacggac gccgacgtga tgcgccaacg cgcgcatcat gtcgccatag cgctcaagat
     1921 ccagctgcaa cccgaaggca ctcgctcgag ccagtccttg cggcggcttt cccgaacgag
     1981 cgatttcggc agccggcgaa aagcggtcga atgccggtag tttgccgcgc tcgcattcgc
     2041 gcaaccaaag ctgatgaaac ggcactccgt tcagcggcac gccacatcga tcataggaat
     2101 ggacgaaatc cggttgccct tcggcaaagc cctcgagcat cgtagcgagc cgaataccgc
     2161 ttgctgctcg ctcaaccgtg tccgcatcag tcagtccaag cgattggtga aatgtcgcta
     2221 tcgacggcag tgtgctgatg atttgctcgg ccaaggcatc gggcgctggc tctgtcttga
     2281 ccaattgaac gtcgagcaca ggtattcgcc gcttaagagt tgctgcggcc gtccacgcag
     2341 tgagaccgcc gccaacgacg acgaccttgg aaattgagcc ttcgctcacg cggcctcggc
     2401 cattgggcaa tatcgctcaa tgagctcacg atggtcgggc atctccgaag ctgccgcgaa
     2461 cacctcttgg cgaagcgaat gaagggctcg cttcaatgct cccgtcggtg ggacgccggc
     2521 tcttaggtca tgaccatttg ggacgactcc ttggcccatg agtacgccaa cccagcttcc
     2581 gtcgagaaaa attccctcgg tatgtttgac gacgcggcca cgtcgacgga acaagtccat
     2641 cttctcgcgc agtgtgtcgg gaacttccat gtcgcgaaca tgtcgccaga agggtgagct
     2701 atcgcgctcg gtc
//
LOCUS       DASRBJ010000230         3890 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_737170,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000230 DASRBJ010000000
VERSION     DASRBJ010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3890
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_737170"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VE968_06425"
     CDS             <1..207
                     /locus_tag="VE968_06425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HZU51492.1"
                     /translation="DSDPDRARSDLAAAVEIIAAAEEVDRALEHATERLKRDFTDEAL
                     EEQQRLIEAQRGLRQRLAQLAGTD"
     gene            221..2272
                     /gene="rpoD"
                     /locus_tag="VE968_06430"
     CDS             221..2272
                     /gene="rpoD"
                     /locus_tag="VE968_06430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HZU51493.1"
                     /translation="MAKNDTQELDTAEAGDAPLIDLNDASIKKLLARAKKRGYITVDE
                     LNEALPSDQMSPDQIEDIMSAINDMGVQVVENEERGEDEDEQESEAEASLEDEVDPLD
                     DGGPRPAAATKKEPTDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIWGL
                     CESPITFNAIIGWSNALNEGRMQLREILDLEAMLSKGPTAEQIAATEEGEEGEGEISE
                     KVAGPTIKEEDEPADEPEASDEDEDEDMVERRSRPQADDDDEDNTLSLAQMEETLKPQ
                     ALEKFAEITSIFKKFSKVQAARMEALQAGQDFAGSEEKKYQKLREDLTAQVESVQFHG
                     SKIEYLVEQLYSYNRRLTALGGQMLRLAERHRVPRKAFLESYMGHELDENWLIDVAKL
                     DKKWAAFATAERDTVERIRSEISDIAQATGTSLGEFRRIVNMVQKGEREARIAKKEMV
                     EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA
                     ITRSIADQARTIRIPVHMIETINKLVRTGRQFLHETGREATPEELAERLSMPLEKVRK
                     VLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQSNLKETVTRVLASLTPR
                     EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD
                     Q"
     gene            complement(2684..2983)
                     /locus_tag="VE968_06435"
     CDS             complement(2684..2983)
                     /locus_tag="VE968_06435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51494.1"
                     /translation="MSLLDGILNQVSDNASVQNLAAKVGLSPEQVEQAVAALGQAHAS
                     DGDTVETAAAQTGLPEDKLQEIVAHIGGEGALGRFASLLEGDNGASILSGIRNIL"
     gene            complement(3082..3636)
                     /locus_tag="VE968_06440"
     CDS             complement(3082..3636)
                     /locus_tag="VE968_06440"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014075952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HZU51495.1"
                     /translation="MKALEVHLADRPTSVGNEDVEIFVEDVSEADATAIARIYAYHVL
                     NGTASYEVAPPSVEATLTKIRQILANGWPFLVAHTGRDVVGYAYVTQFRDREAYRFTA
                     ENSIYIDAAYQRAGYGKMLMKSLIERSRTYGFRTMIAVIGGAEPASIALHSALGFSEV
                     GRLKHVGFKFGRWLDSVYMQRDIA"
     gene            3698..>3890
                     /locus_tag="VE968_06445"
     CDS             3698..>3890
                     /locus_tag="VE968_06445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51496.1"
                     /translation="MPAYRLSAPYDRQPFQRRMTGLALALAINIGLLLILMTLGIIPP
                     PSTQKTMRGIVVSLIPESRS"
BASE COUNT          921 a         1176 c         1116 g          677 t
ORIGIN      
        1 gatagcgacc cggaccgcgc tcgaagcgat ctggctgctg cagtcgagat tatcgctgcc
       61 gcggaggaag tggacagggc cctggagcat gcaacggaac ggctgaagcg ggatttcacc
      121 gacgaagcac tcgaagaaca acagcgcctg atcgaggcgc aaagaggatt acggcaacgg
      181 ctggcgcaac tcgccggcac ggactaagca gcggaaacct atggcgaaaa acgacacaca
      241 ggaactcgac acggccgaag cgggcgacgc cccgctcatt gacctcaacg acgcgtcgat
      301 caagaagctc ctcgcccgcg ccaaaaagcg cggttacatc acggttgacg agctgaacga
      361 ggctctcccg tccgaccaga tgagccccga ccagatcgaa gacatcatgt cggcgatcaa
      421 cgacatgggg gttcaggtcg tcgagaacga agagcgtggc gaggacgagg acgaacagga
      481 gtccgaggcc gaggcaagcc tagaggacga ggttgatcca ctcgacgatg gtggtccgcg
      541 ccccgcggca gcaacaaaga aagagccgac agaccgcacc gacgatccgg ttcgaatgta
      601 cctgcgcgaa atgggtgccg tcgagctcct gtcacgcgaa ggcgaaatcg cgatcgcaaa
      661 gcgcattgaa gcgggtcgcg acacgatgat ttggggcctg tgcgagagcc caatcacctt
      721 caacgccatc attggatggt cgaacgccct taacgaaggg cgcatgcagc tacgcgaaat
      781 tcttgatctc gaagcgatgt tgtcgaaagg accaaccgcc gaacagatcg ccgcaaccga
      841 agagggcgaa gagggcgaag gcgagatcag cgagaaggtc gccgggccga caatcaagga
      901 agaggacgag cccgccgacg agcccgaagc ttcggacgag gacgaagacg aggacatggt
      961 cgagcgccgc tcgcgaccgc aggcggatga cgacgacgag gataatacac tctcgctggc
     1021 tcaaatggag gaaactctaa agcctcaagc gctcgagaag tttgcggaaa tcacctcgat
     1081 cttcaagaaa ttctcgaaag tgcaggccgc gcgcatggaa gcgctgcagg cgggccagga
     1141 ctttgccggc tccgaagaga aaaaatatca gaaacttcgc gaggatctga cagcgcaggt
     1201 cgagagcgtc cagtttcacg gctcgaagat cgagtatctc gtcgaacagc tttacagcta
     1261 caatcgacgg ctcactgctc ttggcgggca gatgctccgc cttgccgagc gccaccgagt
     1321 tccgcgcaag gcattcctcg aatcgtacat gggtcacgag ctcgacgaga actggctgat
     1381 cgacgtcgcg aagctcgaca agaagtgggc cgccttcgcc acggctgaaa gagacacggt
     1441 cgagcgcatc cgttccgaaa tcagcgacat cgcccaggcg accgggacgt cgctcggcga
     1501 gttccgccgg atcgtgaaca tggttcagaa aggcgaacgc gaggcaagga ttgcaaagaa
     1561 ggaaatggtc gaagcgaacc tgcgcctcgt catttcaatt gccaagaaat ataccaaccg
     1621 cggcctgcag ttcctcgacc tcatccagga ggggaacatc ggcctcatga aggcagtcga
     1681 taaattcgaa tatcggcgag gctataagtt ctccacctat gcaacatggt ggatccgaca
     1741 ggcgatcacc cggtccatcg ccgaccaggc gcgcaccatt cgaatccccg tccatatgat
     1801 cgagacgatc aacaagcttg tccgaactgg acgacagttc cttcatgaga ctgggcggga
     1861 agcaacgccc gaggaactcg ctgaacgcct gtcgatgccg ctggaaaagg tccgcaaggt
     1921 tctcaagatc gccaaggaac cgatcagcct cgaaacgccg atcggcgacg aggaggacag
     1981 ccatcttggc gacttcatcg aggataaaaa tgccgtcatc ccagtggatg ccgcgatcca
     2041 gtcgaacctt aaggaaacgg ttacgcgcgt gctcgcgagc ctcacgccgc gcgaggagcg
     2101 ggtcctgcgc atgcgctttg gtatcggcat gaacaccgac cacacgcttg aggaagtcgg
     2161 acaacaattc tcggtcacgc gcgaacgaat tcgtcagatc gaagccaagg ctctacggaa
     2221 gctcaagcat ccaagccgca gccggaaaat gcgatcgttc ctcgaccagt gatcgcgcat
     2281 gcggtcacca gttgacgagc gtgcgaagga cgggacgccg tcctatgccc cgtcgcacca
     2341 ctgatggcgt tcgcgatcgg ctgaccaccg ctcgaacgag ccgcactgct ctcccgcagc
     2401 cggagcaacg cgcactcgcg gtcgaattgc tcgtcacccg gtaaacgggc ctcagtgctg
     2461 cgccgttaac cctgttccct agggtgaacg aaacggctcg agaagatatc ttcgcttctc
     2521 ggcgccgctt accaaagcga gctctgcgac gccgccaaga gcgtatgaag ccctgcaagg
     2581 gcatcctccc ctttgccccg cagggcttcc tgtatggaaa gaccgagccc gttcacccgc
     2641 tcaagtcgct gagcgcatgc tttgagcgag catcatggga cgatcagagg atattcctga
     2701 tcccgctcaa gatggaggcc ccattgtcgc cctcgagaag cgaagcaaaa cggccgagcg
     2761 ccccctcgcc gccgatgtgt gctacgattt cctgcaactt gtcttctgga agcccagtct
     2821 gcgccgccgc ggtctcaacc gtatctccat cgctcgcgtg tgcttgtccc aacgccgcga
     2881 cggcttgttc aacctgctcg gggcttaatc caaccttcgc tgcaagattt tgaacagagg
     2941 cattgtcaga aacctggttg agtatgccat ctaggaggct cattcttttt tctccctcgg
     3001 gcgcggccgc cgcgcccgag aatgaattac caagagccac gcgtggaagc gacaggctag
     3061 ctgccattta acgaccgatt gtcacgcgat atcgcgttgc atgtagacgc tgtcgagcca
     3121 ccgcccgaac ttgaagccaa catgtttcag ccttccgacc tcggaaaatc cgagcgcaga
     3181 gtgcagcgcg atcgatgccg gttcggcacc cccgataacc gcaatcatcg ttcggaaacc
     3241 ataggtacgc gagcgctcaa tgaggctctt cataagcatc ttcccatagc ccgctcgctg
     3301 atacgccgca tcgatgtaga tgctgttctc ggcggtaaag cgataggcct cgcgatcacg
     3361 aaattgcgtg acataggcat atccgacgac gtcacgacca gtatgtgcca caagaaacgg
     3421 ccacccgttg gcaagtatct gacggatctt tgtgagggtt gcctcgacgg atggaggcgc
     3481 aacttcatag gaagccgtgc cgttgaggac atgatatgca taaatgcgag cgatcgccgt
     3541 tgcgtcggct tcgcttacat cctcgacgaa gatctccaca tcttcgtttc caacactcgt
     3601 cggtcgatcg gcaaggtgaa cttccaacgc tttcattgcg ggttcaccaa ctgctcgttt
     3661 aggtcgcggc tcacgcgacg caactccggt tcagttcttg ccagcctatc gcctctccgc
     3721 gccctacgac cgtcagccgt tccagcggcg gatgaccggt cttgcgctcg cactggcaat
     3781 caacatcggg ctcctgctaa tcctgatgac gctcggcatc attccaccgc catcgacgca
     3841 aaaaaccatg cgcggtatcg tcgttagcct gattcccgag agccgcagct
//
LOCUS       DASRBJ010000231         3982 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_230792,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000231 DASRBJ010000000
VERSION     DASRBJ010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3982
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230792"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..166
                     /locus_tag="VE968_06450"
     CDS             <1..166
                     /locus_tag="VE968_06450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008069186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3470 domain-containing protein"
                     /protein_id="HZU51497.1"
                     /translation="TESGLEKWLELNSTFSAEWPNITRKKDSPADADDHKGEEGKYDK
                     YFTSDAGSGD"
     gene            304..1110
                     /locus_tag="VE968_06455"
     CDS             304..1110
                     /locus_tag="VE968_06455"
                     /inference="COORDINATES: protein motif:HMM:NF018352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MipA/OmpV family protein"
                     /protein_id="HZU51498.1"
                     /translation="MAQSSTAPQASGLPSAEDVAQRDMVTIGVGGAIVPDYEGSDDYR
                     IIPAGAIRARVNGISISTNGPYLSANLVPQAGGFSLDAGPIVGLRFDDRRHSDDDVVR
                     LMLKRKTAIEVGGFAGFSVRGILDPYDTLSFHLDVLHDIGDAYKSTVFDPHVDFSTPV
                     SRKTYVSLSAGAEIVSDKFARYYFGVTPADSAATGGLLPLYTPNGGLKNLKASLLVNQ
                     SLTGDLLGGLSVFGLVQYSRLVGDFKRSPIVEQRGSASQWIGAAGLAYTW"
     gene            complement(1093..3009)
                     /gene="cysN"
                     /locus_tag="VE968_06460"
     CDS             complement(1093..3009)
                     /gene="cysN"
                     /locus_tag="VE968_06460"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019830842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysN"
                     /protein_id="HZU51499.1"
                     /translation="MNRPSDVQSWLGVQQRKELLRFITCGSVDDGKSTLIGRLLYETR
                     QVFDDQLAALEQDSKRHGTQGDSLDFALLVDGLSAEREQGITIDVAYRYFSSDKRKFI
                     VADTPGHEQYTRNMVTGASTADLAVLLVDARKGVLTQTRRHSYLGRLLGIRRFVLAVN
                     KMDLVSYDETTFRQIAQDYGRFAARIGVSDWLAIPVSSLRGDNVTKPSAAMSWHEGPT
                     LLGYLDNVQLDWAADTKKPFRMAVQWVNRPHPDFRGFAGQVSSGSISRADEVRLLPSG
                     RVTRVARIVTADGELEEATAGQSVSLTFAHDVDCSRGDVIAAADAPPEVADQFEATIV
                     WMDEHELLPGRGYWLKIGTQMVSAVVHEPKYEINVNSLDHLAAKTLGLNAIGVAEIAT
                     DREIIFEPYAVDGSSPNRALGGFILIDKLTNATVGCGMLHFALRRAHNIHRQHLDVSR
                     ETHAALKGQRPAVLWFTGLSGAGKSTIANLVEKKLVARGRHTFLLDGDNVRHGLNRDL
                     GFTEADRIENIRRVGEVARLMADAGLIVLTAFISPFRAEREMVRKMLPKGEFIEIFVD
                     APLAEAEKRDPKGLYAKARAGELKNFTGIDSPYEAPENPEVRIDTTQLSAEQAAELIV
                     DRVMNSASPLPSIS"
     gene            complement(3006..3911)
                     /gene="cysD"
                     /locus_tag="VE968_06465"
     CDS             complement(3006..3911)
                     /gene="cysD"
                     /locus_tag="VE968_06465"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014076564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA];
                     GO_process: GO:0019419 - sulfate reduction [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HZU51500.1"
                     /translation="MTELLTHLDRLEAESIFILRETVAEAARPVMLYSMGKDSAVMLH
                     LARKAFFPGSLPFPLLHVDTTWKFKDMYAHRDKVAAQPGIDLIVYQNPDALQKGINPF
                     DHGPLHTDLWKTEGLRRALDAYGFDAAFGGARRDEEKSRAKERVFSFRDKNHRWDPKR
                     QRPELWSLYNVRKNRGESMRVFPLSNWTELDVWEYVLREKIEVVPLYFAAERPTIVRD
                     GLILMVDDERMRLAPGDKVLQRKVRFRTLGCYPLSGAVESDADTVEAIIAEMVASATS
                     ERQGRAIDRDGGSASMEKKKQEGYF"
BASE COUNT          788 a         1187 c         1136 g          871 t
ORIGIN      
        1 taccgagagc ggtcttgaga aatggttgga gctcaattcg actttttcag cggaatggcc
       61 gaacatcacc cgaaagaagg acagcccagc cgacgcggac gaccataaag gcgaagaagg
      121 gaagtacgac aagtatttta cctccgacgc gggaagcggc gactaagcaa ccgtgccatc
      181 tcgcaacggg cccggaactt tcccaccggc tcgtccgctg tgccgcgcat gaaacgatca
      241 tgggcgaggt tcatcagctg ctcggcgtgg ttcggcttgg ctgtctgtct ggcgacgccg
      301 gctgtggctc aatcatcaac ggcaccgcaa gcaagcggtc tcccgagcgc cgaggacgtc
      361 gcgcaacgcg acatggtgac cattggtgtc ggcggcgcca tcgttcccga ctacgaaggc
      421 tccgatgatt accggatcat tcccgccgga gcgatcagag ccagggtcaa cggtatctcg
      481 atcagtacga acggacccta cctaagcgca aatctcgttc cgcaagcggg tggtttctcc
      541 ctcgatgcgg gtcccatcgt cggactgcgt ttcgacgacc gccgccatag tgacgatgac
      601 gtcgtacggc tgatgctcaa acggaaaacc gcgatcgaag ttggcggttt cgcggggttc
      661 agcgtccgcg gaatcctcga tccgtacgat acactttcgt ttcacctcga tgtgcttcac
      721 gatatcggcg atgcgtacaa gtcgacggtg ttcgatccac acgtggattt ttcgacgccc
      781 gtttcgcgca agacctacgt cagcctgagc gctggagcag aaatcgtaag cgataaattt
      841 gctcgttatt actttggagt aactccagcc gacagtgcgg ccaccggcgg cctgcttcca
      901 ctctacacgc cgaatggtgg tcttaagaac ttgaaggcga gcctcctcgt caatcagtcg
      961 ctcaccggcg atctgctggg cgggctgtcc gtatttggcc tcgtgcaata ttctcgcttg
     1021 gtcggtgatt tcaagcgctc gccgattgtt gagcagcgcg gaagcgcgag ccagtggatc
     1081 ggcgctgccg gcctagctta tacttggtag cggcgaagcg ctgttcatca ccctgtcgac
     1141 gatgagctcg gcggcttgct ccgcgctcag ctgggtcgtg tcgatgcgga cttcgggatt
     1201 ttcgggcgcc tcgtagggac tgtcgatgcc ggtgaagttc ttgagctctc ctgcgcgagc
     1261 ctttgcataa agtcctttag ggtcgcgctt ctctgcctcg gcgagtgggg cgtccacgaa
     1321 gatctcgatg aattcgcctt tgggcagcat tttgcggacc atctcgcgtt cggcgcggaa
     1381 cggcgagatg aacgcggtaa gcacgatgag cccggcgtcg gccatcaggc gcgcaacttc
     1441 accgacacgt cggatattct cgatgcgatc cgcttcggtg aagccaagat cccgattgag
     1501 gccatgtcgg acattgtctc cgtcgaggag aaacgtatgc cgtccccgtg caacgagctt
     1561 cttctcgacg agattggcga tcgtcgactt gccggctccg gaaagacccg tgaaccacaa
     1621 gaccgcaggc cgctgcccct tgagcgccgc atgcgtttcc cggctaacgt ccagatgctg
     1681 ccgatggata ttgtgcgcac ggcgaagcgc gaagtgcagc atgccgcagc caacggttgc
     1741 attggtgagc ttgtcgatga ggatgaaccc gccgagtgcg cggttcgggc ttgatccatc
     1801 aaccgcatag ggctcgaaga taatttctct gtcggtcgca atctccgcaa ccccgattgc
     1861 attgagacca agagtcttcg ccgcgagatg atcgagtgaa ttgacgttga tttcatattt
     1921 cggctcgtgg acgacggcgc tcaccatctg cgtaccaatt ttgagccagt atccgcgacc
     1981 cggcagcaac tcgtgctcat ccatccagac gatcgttgct tcgaactgat cggcgacttc
     2041 aggcggtgcg tcagcggcgg caatcacgtc gcctcgagaa cagtcgacgt catgcgcgaa
     2101 agtcaaactt acggattgcc cagctgtcgc ctcctcgagt tccccatccg ccgtaacgat
     2161 gcgcgctact cgagtgacgc ggcccgacgg aagcaaccgc acttcgtccg ctcgagaaat
     2221 cgatcccgag ctcacctgtc ccgcgaaacc gcggaagtcc gggtggggcc ggttgaccca
     2281 ttgtacagcc atgcgaaatg gcttcttggt atcggccgcc cagtcgagtt gcacattgtc
     2341 cagatagcct agaagcgtcg gcccttcatg ccacgacatt gcggcgcttg gctttgtgac
     2401 attgtcgccg cgcaggctcg aaacgggaat tgcgagccaa tccgaaacgc caatccttgc
     2461 agcgaagcga ccatagtctt gcgcgatttg gcggaacgtc gtttcatcat agctgacgag
     2521 atccatcttg tttaccgcca gaacaaatcg gcgaataccg agcagcctgc caagataaga
     2581 atggcggcgc gtctgcgtca ggacgccctt tcgggcgtca acaagcagaa cggcgaggtc
     2641 cgccgtcgat gcgccggtca ccatgttgcg cgtgtattgc tcgtggcccg gcgtgtcggc
     2701 gacgatgaac ttgcgcttgt cacttgagaa gtaacggtac gcgacgtcga ttgttatccc
     2761 ttgctctcgc tcggcggaga gaccgtcgac aagcagcgcg aaatccagcg agtcgccttg
     2821 cgtgccatgg cgtttgctgt cctgttcaag agcggcgagt tggtcgtcga acacctgccg
     2881 tgtctcgtaa agcagtcgcc caatgagcgt cgatttgcca tcgtcgacac ttccgcaggt
     2941 gataaatcgc aacagttcct tgcgctgttg cacgccgagc cacgactgca cgtccgaagg
     3001 gcgattcaaa agtagccctc ctgcttcttc ttttccatgc tggcgcttcc gccgtctcgg
     3061 tcgattgcac ggccctggcg ctcactcgtg gcgctcgcta ccatctccgc aatgatcgcc
     3121 tcgacggtat cggcgtcgct ctcaaccgct cctgaaagcg gatagcagcc gagcgttctg
     3181 aaccggactt tgcgttggag caccttatcg ccgggagcaa gccgcatccg ttcatcatcg
     3241 accatcaaaa tcaggccatc tcgcacaatc gtcggccgtt cggccgcgaa atagagcggc
     3301 accacttcta tcttctcacg aagaacatat tcccagacat cgagctcagt ccaattagac
     3361 aatggaaata cccgcatgct ctcgccgcgg ttctttcgaa cattgtatag cgaccagagc
     3421 tcagggcgct gtcgctttgg atcccatcgg tgatttttgt cgcggaagct gaacacgcgc
     3481 tcctttgccc ggcttttttc ctcgtcgcgt cttgcgccgc cgaatgccgc atcaaacccg
     3541 tatgcatcga gcgctctgcg taatccttcg gtcttccaca ggtcggtatg aagcggtcca
     3601 tgatcgaatg ggttgatgcc cttttgaagc gcatccgggt tttggtagac gatgagatca
     3661 attccaggct gcgccgctac cttgtcgcgg tgcgcgtaca tgtccttgaa tttccacgtc
     3721 gtgtcgacgt gaagcaatgg aaagggaagc gaccctggaa agaaggcctt tcgggcaaga
     3781 tgcagcatca ctgccgaatc cttgcccatc gagtagagca tcactggccg agctgcttca
     3841 gcgacagtct cacgaaggat gaagatactc tccgcttcca ggcggtcgag gtgtgtcagt
     3901 agttcagtca ttcaaattgc gatttgcccg ctccgttcgg acttgtcact tgcgacgcga
     3961 ggcccatcgc ctaggctttt tc
//
LOCUS       DASRBJ010000232         2946 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_487878,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000232 DASRBJ010000000
VERSION     DASRBJ010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487878"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..922
                     /locus_tag="VE968_06470"
     CDS             <1..922
                     /locus_tag="VE968_06470"
                     /inference="COORDINATES: protein motif:HMM:NF012412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51501.1"
                     /translation="FAAHRDTDRSWGWDNDPKGEELVRHLLSVRDLSSADVRMILELS
                     EAPPPRVLEHKGVALYFEKPSSRTRNSMELAVAELGGHPVYIQPSELGIGTRETVGDV
                     THTLACYHRIIAARVFDHALLEEMARVGAAPILNMLSASDHPLQALADLLTIRQLFGR
                     LEGVRVAFIGEGNNVSRSLAQACALVGAEFTIASPAGYGLGDAPDVRQVVDPADAVED
                     ANIVYTDVWVSMGGDDSPERRALFEPYQVDEALMARSADAWFMHCLPARRGEEVTAPV
                     IDGPRSAIWRQAQNRMHSARGAMLWMLDQA"
     gene            922..2151
                     /locus_tag="VE968_06475"
     CDS             922..2151
                     /locus_tag="VE968_06475"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HZU51502.1"
                     /translation="MTKNKKLRVVLAYSGGLDTSIILKWLQTEYDAEVVTFTADLGQG
                     EEVEPARRKAEMLGVRPENIFIEDLREEFVRDFVLPMFRANTQYEGDYLLGTSIARPL
                     IAKRQIEIAREVGADAVCHGATGKGNDQVRFELGYYALEPDIKVIAPWREWEFQSREA
                     LLDFAEKHQIPIAKDKRGEAPFSIDANLLHSSSEGKVLEDPSAEAPEYVHQRTISPEN
                     APDKATIIAIDFERGDPVAINGESLSPATLLARLNELGHDNGIGRLDLVENRFVGMKS
                     RGVYETPGGTILLAAHRGIESITLDGGSMHLKDELMPRYASLIYNGFWFAPERAMLQA
                     AIDKSQEHVSGRVTMKLYKGNATVIGRESSHSLYDQDLVTFEEGSGSYDHRDAAGFIR
                     LNALRLRTIAQRARRTA"
     gene            complement(2204..>2946)
                     /gene="argH"
                     /locus_tag="VE968_06480"
     CDS             complement(2204..>2946)
                     /gene="argH"
                     /locus_tag="VE968_06480"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HZU51503.1"
                     /translation="GFDRPTANSLDSVSDRDFALDYLSAATQCSLHLSRLAEELIIWA
                     SAPFAFVKLSDQFSTGSSIMPQKRNPDAAELVRGHCGRILGAQTSLMVTMKGLPLAYS
                     KDMQDDKEPVFEAHDLLMISLQALAGMIETIAFVPQRMRAAAAQGYSTATDLADWLVR
                     EAGVPFREAHHITGRAVKMAEDRGCDLADLPIAALKSIDGRIDERVFEVLSVEASVRS
                     RTSYGGTAPERVREQIALAKQQLDSSAA"
BASE COUNT          598 a          837 c          921 g          590 t
ORIGIN      
        1 attcgctgct catcgagata ctgaccgatc atggggttgg gacaatgatc cgaaaggcga
       61 agagctggtg agacatctcc tttcagtacg cgacctctca tcggccgacg taaggatgat
      121 ccttgagctg tccgaagcgc cgcctccgcg ggtgctcgag cacaagggcg ttgcactcta
      181 ttttgaaaag ccgagctcgc gaacgcgcaa ctcaatggaa ctcgcggtgg ctgaactcgg
      241 cggacacccc gtgtacatcc agccctctga acttggcatc ggcacgagag aaaccgttgg
      301 tgatgtcacg catacgctcg cctgctatca tcgtatcatt gccgctcggg tcttcgatca
      361 tgctctgctc gaagagatgg cgcgggtcgg cgccgctccc attctcaaca tgctctcggc
      421 aagcgatcat ccgcttcagg cgcttgcgga tcttctgacg atcaggcagc tctttggacg
      481 cctcgaagga gtgagggtcg cgttcattgg cgaaggcaac aatgtctcgc gctcgcttgc
      541 acaagcatgc gcactcgttg gagccgaatt caccatcgca agcccagctg gttacggtct
      601 tggcgatgcg cctgacgttc ggcaggtcgt cgatcccgct gatgcagtcg aggacgccaa
      661 catcgtttac acggatgtct gggtttcgat gggcggtgac gatagtcccg agcgccgtgc
      721 tctttttgaa ccttatcagg tcgatgaggc gctgatggcg cgctcggccg acgcctggtt
      781 catgcactgc cttccggcac gacgcggcga ggaagtgacg gcaccggtga tcgatggacc
      841 gcgctcggcg atttggcgcc aggcgcaaaa caggatgcac agtgcgcgcg gcgcaatgct
      901 ttggatgttg gatcaagcat gatgacgaag aacaagaagt tgagggtggt gctcgcctat
      961 tcgggcggtc tcgatacctc gatcatcctc aagtggctgc agacggaata tgacgccgag
     1021 gtcgtgacgt tcacggccga cctggggcag ggcgaggagg tcgaacccgc gcggcgcaag
     1081 gccgagatgc ttggcgttcg accagagaat atcttcatcg aggatctgcg cgaggagttc
     1141 gtccgcgact tcgtccttcc gatgttccgg gccaacacgc agtacgaagg tgattatctt
     1201 ctcgggacct cgatcgcgcg gccgctcatt gccaagcgac agatcgagat tgcgcgggaa
     1261 gtcggcgccg acgccgtctg tcacggggcg accggcaagg gaaatgacca ggtgcgtttc
     1321 gagcttggct attacgcgct tgaacccgac atcaaggtga ttgcgccgtg gcgtgagtgg
     1381 gaattccaga gccgggaggc gctgctcgat ttcgccgaga agcaccaaat acccatcgcc
     1441 aaggacaagc gcggagaagc ccctttctcg attgacgcga acctcttgca ctcgtcgtcg
     1501 gaagggaagg tgctcgagga tccttcggcc gaagcgcccg aatatgtaca ccagcgcacg
     1561 atctcgcccg agaatgcgcc agataaagca acaatcattg cgattgactt tgaacgcggc
     1621 gatccggtgg cgatcaatgg cgaaagcctc tctccggcga cgcttctcgc gcggctcaac
     1681 gagcttggtc acgacaatgg tatcgggcgc cttgacctcg tcgagaaccg tttcgttgga
     1741 atgaaatcgc gcggcgttta cgaaacgccg ggaggaacaa tcctgcttgc ggcgcacagg
     1801 ggcatcgaga gcatcacgct cgacggaggt tcaatgcacc tcaaggacga gctcatgccg
     1861 cgctatgcga gcctcatcta taatgggttc tggttcgcgc ccgagcgagc aatgcttcag
     1921 gcggcaatcg acaaaagcca ggagcatgtg agcgggcgcg tgacgatgaa gctctacaag
     1981 ggcaacgcca ccgtcatcgg acgcgagagc agccactcgc tctatgacca ggacctcgta
     2041 acgttcgaag aagggagtgg cagctacgat catcgtgacg cagctgggtt tattcggttg
     2101 aacgcgcttc ggcttcggac gattgcgcag cgcgcgcggc gtaccgccta gcacgcgcga
     2161 cggcgcgatc gatcattaat gctgcagtgg tgttgatcgc ccttcaggct gccgagctat
     2221 cgagttgttg ctttgcaagc gcaatctgtt ctcgaacccg ctcaggagct gtaccgccgt
     2281 agctcgttcg gcttcggacc gaagcctcga cgctcagaac ttcgaaaacg cgctcgtcga
     2341 tgcgcccatc gattgacttg agcgcggcga ttgggaggtc ggcaaggtca cagccgcggt
     2401 cttccgccat cttcaccgcg cgtccggtga tgtgatgcgc ctcgcgaaac gggacaccgg
     2461 cttcgcgcac gagccagtcg gcaaggtctg tcgcggtcga atagccttgt gccgccgcgg
     2521 ctcgcatgcg ctgaggaacg aaggcgatag tctcgatcat tcctgcaagt gcttgaagcg
     2581 aaatcatcaa caggtcgtgg gcctcaaaga ccggttcctt gtcgtcctgc atatccttcg
     2641 aataggcgag tggtaagcct ttcatggtga ccatgagaga cgtttgggcg ccgaggatgc
     2701 ggccgcaatg cccgcggacg agttccgccg catcgggatt gcgtttttgc ggcatgatcg
     2761 aagaaccggt cgagaattga tcggagagct tcacgaatgc gaacggcgcg cttgcccaga
     2821 tgatcagttc ttcggcgagg cgcgaaaggt gcaagctgca ttgtgttgcc gccgataaat
     2881 aatcgagcgc gaagtcgcgg tcggatacgc tgtcgaggct gtttgccgtg ggtcgatcga
     2941 agccca
//
LOCUS       DASRBJ010000233         3833 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_429421,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000233 DASRBJ010000000
VERSION     DASRBJ010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3833
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429421"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            122..523
                     /locus_tag="VE968_06485"
     CDS             122..523
                     /locus_tag="VE968_06485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51504.1"
                     /translation="MHRVLLGLAVGAALTAPASSKSFAAAAFSASSAFHGASARVEAT
                     RGVRVHRLIGVPAPPSGDDRRRSRGAFAYPYAGDYYDAAYDINESWDPGSFNDWWHDR
                     PDRAYPRWVWHNRHCSQDRMWWSGAGWRCTP"
     gene            complement(520..1725)
                     /locus_tag="VE968_06490"
     CDS             complement(520..1725)
                     /locus_tag="VE968_06490"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HZU51505.1"
                     /translation="MRLYLLLPLLLSACATFQSRNGPFGAEVGVAFTTNGEVGHFANG
                     IADPKSGRRVTIADPVRVASVSKMVTAIGVMRLVGEGKLDLSSDVSRWLGWNLRNPNF
                     PDRPINLSMLLSHTSSVREHDDDYVIPLGASLEDLMRDPRNWDSLHSPGSYFAYVNLN
                     YPIIGSIIEKVTGTRFDLWMHANVLAPMKIDACFNWPTCSDEAVAHAVELDSPTGKPV
                     KDDLHGHRPDCPVFVKDGEPCDLTLWRLGENGALFAPQGGLRISAQGLARIGRMLLDG
                     GTIDGVRILSPGAVDALLTQVWRFDGSNGQTDGGFYCSAGNGTHQLPNRQPGCADDIG
                     TRGSVLVGHAGDAYNMKSGIWIDRAHQHGIAYFVTAVPDPAPKEPGSAYTAAEVHAFK
                     RSYALLPRD"
     gene            1888..3660
                     /gene="phaC"
                     /locus_tag="VE968_06495"
     CDS             1888..3660
                     /gene="phaC"
                     /locus_tag="VE968_06495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0042619 - poly-hydroxybutyrate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I poly(R)-hydroxyalkanoic acid synthase"
                     /protein_id="HZU51506.1"
                     /translation="MADDTKIGGAVPTLEDWQHWTLVMGRAQQMLMEFWASSLKNNQP
                     FPPWSSPAFGFDNDSGANDPMALMSAGAQAWAKGLETWGKVLGGVTAVAPGGEQDRKD
                     RRFAAPEWRENPIFDTIRQTYLRVSDQLLGTVDEIEGIDEPTREKLRFATRSFVDAMS
                     PSNFALTNPQVLKRTLETRGENLLKGLANMLKDIASGQLTQTKSGVFEVGRNLATTAG
                     KVIKQTDLYQLIQYTPTTSEVLKTPLVIFPPWINRFYILDLTPEKSFVRWCVENGISL
                     FMVSWKSADESIAGATLDDYVIRGQIDAIDTIRDLLEVPSVHAIGYCVAGTTLSATLA
                     YLEAKKEAEKVRSATFFTAQVDFSEAGDLKLFTGAETMSLLDQLTKEKGYLDGRYMAA
                     TFNLLRGRDLIWNYVVNNYLLGEEPPPFDLLYWNSDTTNLPGDWHRDYLETFYKGNKL
                     AQKGAIKVAGTPVDIDRVKTPAYIQAGREDHIAPPHSVWKIMDHFSGPKRFVLAGSGH
                     IAGVVNPPAAQKYQYWVNDEPSSTLQGFIDGATEHKGSWWPDWLSWLKKLDDETVKVE
                     GARVPGVGKLKAIEDAPGSYVKAR"
     gene            3644..>3833
                     /locus_tag="VE968_06500"
     CDS             3644..>3833
                     /locus_tag="VE968_06500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51507.1"
                     /translation="MSKPADTLILRRARIEEHDELEQLQAHASLELPEHRDRLLSDPA
                     DVHLPPAQIANGQVIVAEY"
BASE COUNT          800 a         1130 c         1159 g          744 t
ORIGIN      
        1 gacagagctt tcaaaggact gaacgggcgt cgctcgtggg taaacttacg gagtgcaaca
       61 tcgggcccga accagcgttt gtctcgcgtc cgaaacggat ttttttgaaa ggagcagcca
      121 catgcatcgt gtgttgcttg gtctcgcggt tggtgcagcg ctgaccgctc ctgcatcgtc
      181 caagagcttt gctgccgcgg cattcagcgc gtccagcgcc tttcatggcg caagcgccag
      241 agtcgaggca actcggggag tgcgggtgca tcggctgatc ggggttcccg cgccacccag
      301 tggcgatgat cgtcggcgat cacgcggcgc tttcgcctat ccctatgcgg gcgattatta
      361 tgacgcggct tacgacatta acgagagctg ggacccgggc agcttcaatg actggtggca
      421 cgaccgaccc gatcgcgctt acccgcggtg ggtctggcac aatcgtcatt gcagccagga
      481 tcggatgtgg tggtcgggcg ccggatggcg ctgtacgccc tagtcgcgtg gcaaaagcgc
      541 gtagcttctc ttgaacgcgt gcacttcggc ggcggtgtag gcactgccgg gttccttggg
      601 cgcggggtcg ggcactgcgg ttacgaaata ggcgatgccg tgctggtgcg cgcggtcgat
      661 ccagatgcca cttttcatgt tgtaggcatc gccggcatgg ccaacgagaa ccgaacccct
      721 tgttccaatg tcatcggcac agccaggctg ccggttgggc aactggtgag tcccgtttcc
      781 ggcgctgcag taaaatccgc cgtcggtttg gccattgctc ccatcgaagc gccatacctg
      841 cgtcaacaaa gcgtcgaccg cgccgggtga aagtatccgc acgccatcga tcgttccgcc
      901 gtcaagaagc atgcggccaa tccgcgcaag tccttgcgcc gagatgcgca ggcctccttg
      961 cggcgcaaac aacgcaccat tctcacccaa gcgccagagg gtgagatcgc agggttcacc
     1021 gtccttcaca aagactgggc agtctggacg atgaccatga aggtcgtcct tcaccggctt
     1081 tcccgtgggc gaatcgagct caacggcgtg ggcaaccgct tcgtcgctgc acgtcggcca
     1141 gttgaagcag gcatcgatct tcatcggcgc caatacattc gcgtgcatcc ataaatcgaa
     1201 gcgcgtgcct gtaacctttt cgatgatcga gccaatgatt ggatagttga gattgacata
     1261 ggcgaaatag cttcccggcg aatgcagtga atcccagttg cgagggtcgc gcatcaggtc
     1321 ttcaagcgag gcgccgagcg ggatcacgta atcatcgtca tgctcacgaa ccgacgacgt
     1381 gtgcgacaac agcatggaaa ggttgattgg ccggtcggga aagttcgggt tgcgcaaatt
     1441 ccagccgagc cagcgcgaga catcgctcga gagatcgagc tttccctcgc cgaccagccg
     1501 catcacgccg atcgccgtca ccatcttgct aaccgacgca actcgaaccg gatcggcgat
     1561 cgtgactcgc cgaccgctct tggggtcagc gatgccgttg gcaaaatgtc cgacttcgcc
     1621 gttcgttgtg aaggcgacac cgacttctgc gccgaagggt ccgtttcttg attgaaacgt
     1681 cgcgcaggca ctgagcagca atggcagaag gagatatagg cgcatcgttc ttgatgctta
     1741 tgcgcagttc acctcgagtg ccactcaagg gttcatttct tcgcgggctc gatattgctg
     1801 aggggctgtt tgcgccaatc gagaccgaaa ccggagcgcg ctcccttctt cttcgttttg
     1861 tgacgttgca ggcgtaaagg cgaggtcatg gcggacgaca cgaagatcgg cggcgcggtc
     1921 ccgacactcg aagactggca gcactggacg ctcgtgatgg gccgcgcgca gcagatgctg
     1981 atggaattct gggccagcag cttgaagaac aaccagccct ttcctccctg gtcgtccccg
     2041 gcgttcgggt ttgacaacga ttccggcgcg aatgacccga tggcgctgat gagcgccggt
     2101 gcacaggcat gggcgaaagg cctcgagacg tggggcaagg ttcttggcgg tgtgacggcc
     2161 gttgctccgg gcggcgagca ggaccggaag gaccgccgct ttgcagcgcc cgagtggcgc
     2221 gaaaacccaa tcttcgacac gatccggcaa acctatctca gggtctcgga ccagctgctt
     2281 ggcacggtcg acgagatcga ggggattgac gagccgacgc gcgagaaatt gcgctttgca
     2341 acgcgcagct tcgtcgacgc gatgagccca tcgaacttcg ctctgacgaa cccgcaggtg
     2401 ttgaagcgaa cgctggagac gcgcggcgaa aacctcctca agggccttgc caacatgctc
     2461 aaggacattg cgtccggaca gctaacgcag accaagtccg gcgtgttcga ggtcggtcgc
     2521 aatcttgcaa caacagccgg caaggtgatc aagcagacgg atctttacca gctcatccaa
     2581 tacacgccga cgaccagcga ggtcttgaag acaccgctcg tcattttccc gccatggatc
     2641 aaccgctttt acatcctcga cctgacgccc gagaaaagct tcgttcgatg gtgcgttgaa
     2701 aacgggatca gcctgttcat ggtgagctgg aagtcggcgg acgaaagcat cgctggcgca
     2761 acactcgacg attatgtgat ccgcggacag atcgacgcga tcgacaccat tcgagacctg
     2821 ctcgaggtgc caagcgtgca tgcgattggc tattgcgtcg ctggaacgac gctttcggcg
     2881 acgctcgcct atctcgaagc aaaaaaggag gccgagaagg tgcgatcggc aaccttcttc
     2941 acggcgcagg tcgatttctc cgaagcgggc gatctcaagc tttttacggg agccgagacc
     3001 atgtcgctcc tcgatcagct aaccaaggaa aagggctatc ttgacgggcg ctacatggcg
     3061 gcgaccttca acttgctgcg cggccgcgac ctcatctgga attatgtggt caacaattac
     3121 cttctcggcg aagagccgcc gccgttcgat ctactgtact ggaacagtga cacgaccaat
     3181 ctccccggcg actggcaccg cgactatctc gagaccttct acaagggcaa caagcttgcg
     3241 caaaagggcg caatcaaggt cgccggcact cccgtcgaca tcgatcgggt aaagacgccg
     3301 gcctacatcc aggctgggcg cgaagaccat atcgcgccgc cccacagcgt ctggaagata
     3361 atggaccatt tctcagggcc caaaaggttc gtccttgcag gttccgggca catcgccggc
     3421 gtcgtgaacc cgcctgctgc tcaaaaatac caatattggg tgaacgacga gccttcgagc
     3481 acgctgcagg gcttcatcga tggagcgacc gagcacaagg gctcatggtg gccagactgg
     3541 ctttcctggc tgaagaagct cgatgacgag acggtgaaag tcgaaggtgc gcgcgtgcca
     3601 ggcgtaggga agctcaaggc cattgaggat gcgccgggaa gctatgtcaa agcccgctga
     3661 tacactcatc cttcgtcgcg cgcggatcga ggagcatgac gagctcgagc agctccaggc
     3721 gcatgcttcg cttgagcttc ccgaacatcg cgaccgcttg ctttcggatc ccgcggacgt
     3781 ccatctgcca cctgcgcaaa tcgccaatgg tcaagtgatc gttgccgaat atc
//
LOCUS       DASRBJ010000234         7110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_83425,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000234 DASRBJ010000000
VERSION     DASRBJ010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7110
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83425"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..587)
                     /locus_tag="VE968_06505"
     CDS             complement(<1..587)
                     /locus_tag="VE968_06505"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HZU51508.1"
                     /translation="MTRGSTSQWNAADYSRVGAFVAELGGAALDLLDPQPGERILDVG
                     CGDGTLTKRIVERGATVLGVDNSPEMIVAARQNGVDALLLAAEDMQFFSEFDAAFSNA
                     TLHWVLQKEQAARATFRALKPCARFAGEMGGEGNLERLREALDEELIIRGFVPPIEAS
                     NWYASPEEFARVYEDAGFREIDARLIERPTTIEHGV"
     gene            complement(584..955)
                     /gene="gcvH"
                     /locus_tag="VE968_06510"
     CDS             complement(584..955)
                     /gene="gcvH"
                     /locus_tag="VE968_06510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010185476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HZU51509.1"
                     /translation="MPVYFTKEHEWIRVDGDTATIGISSHAQEQLGDIVFAEVPEAGR
                     KLSKGEEAAVVESVKAASDVYAPVSGEVIEGNQAIGDDPSLVNSDPEGEGWFFKLKLD
                     DPAELNGLMDETGYRDWVKTL"
     gene            complement(955..2154)
                     /gene="gcvT"
                     /locus_tag="VE968_06515"
     CDS             complement(955..2154)
                     /gene="gcvT"
                     /locus_tag="VE968_06515"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HZU51510.1"
                     /translation="MSREVHNGPTDDTQARGTAFSGDPQGGDDVAAKQLERLPLDSWH
                     RARGARMVPFAGYEMPVQYEGIIAEHLWTRENAGLFDVSHMGQLLIHGHALDTALESL
                     MPADFQSAADMKPKYSLLLEENGGIIDDLMATRRGNQFYLVVNGATKHGDIAFMENRL
                     PREIVIDHMKEQALLALQGPRAAEVLETIVPGISKLAFMEAAPFSWENHNLWISRSGY
                     TGEDGFEVSIPARAAASFADAVAEHELARPIGLGARDSLRLEAGLPLYGHDLDTSTTP
                     VMAGLTFAINKRRRAEGGFPGAFRILAELENGPVEKRVGFDVVGRQPVREGALVLDGE
                     GNEVGKITSGGFSPSLQRPIAMGYIAAHLAEQGTMVKLEQRGKLFDARVAPMPFVPHR
                     YHRKGAA"
     regulatory      complement(2218..2291)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     regulatory      complement(2293..2382)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            complement(2462..3103)
                     /locus_tag="VE968_06520"
     CDS             complement(2462..3103)
                     /locus_tag="VE968_06520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010164605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51511.1"
                     /translation="MKLRTAALVALTLLSACRHAGDITADNGGGVYAVRSDCPIAGIP
                     TGTGDITLFNPPESRDSSAIDVTAAITKLRSFCQDTGNDVISTVTFTVTGLRRDAGPA
                     RQVILPYFDVALRGGTNIEAKQVGAIALNFPAGSQHAITTGEASIRVNRASATLPANV
                     RAILTRPRKAGEADAAIDPMSDPGVARAVANSTFEHLVGFELTQDQFKYNATR"
     gene            3180..4148
                     /gene="ispH"
                     /locus_tag="VE968_06525"
                     /gene_synonym="lytB"
     CDS             3180..4148
                     /gene="ispH"
                     /locus_tag="VE968_06525"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014074896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HZU51512.1"
                     /translation="MACTVDELPPLRVLIAAPRGFCAGVDRAIQIVELALERFGAPVY
                     VRHEIVHNRFVVERLRAMGAVFVDELDEVPSDRPVVFSAHGVPKSVPEAAQARNLTYV
                     DATCPLVSKVHRQAERLIGEGRHILFIGHAGHPEVIGTFGQVPENSITLIETVEDAES
                     AAVPTTESLAFLTQTTLSVDDTRAIIEALTRRFPSIRAPRSEDICYATSNRQAAVKAI
                     ASECERMLVIGAPNSSNSLRLAEVAERMGVPARLIERATDIDWEWLGKPQSIGVTAGA
                     SAPEILVREVIEALALRFTVSEEITDHSPERMVFKLPRELVSERAA"
     gene            4132..4590
                     /gene="rnhA"
                     /locus_tag="VE968_06530"
     CDS             4132..4590
                     /gene="rnhA"
                     /locus_tag="VE968_06530"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017668826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HZU51513.1"
                     /translation="MSALPEVDIFTDGACRGNPGPGGWGVLLRMGAKERELAGGEPLT
                     TNNRMELLAAIKGLEALKKPCRVKLHTDSIYVRDGITRWVQNWQRNGWKTSDKKPVKN
                     AELWQELINAAAPHIIEWRWVKGHSGHPENDRVDALACEAADEQRRHHRL"
     gene            complement(4686..5813)
                     /locus_tag="VE968_06535"
     CDS             complement(4686..5813)
                     /locus_tag="VE968_06535"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008830348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HZU51514.1"
                     /translation="MSDFDTIIVGGGIAGASLGSEIAGKHRTLIIEAEEYCGYHSTGR
                     SAAFYLESYGGPEVAKLSKASRPFLDKPPREFADHGFLRTRGDLHLTRDELPELPRSV
                     ETRVVERAELERFIPDIKPEWRRALLEPGCADIDVAALHGAFLRSYRKLGGTIATSSR
                     LARARRVANAWIVDLVDGTSLRASILVNAAGAWADSVAIACGVAPLEVKPKRRTMVQL
                     RVGKSGLKDLPLVDDADGTFYFKGEGDRTLWLSPHDEIESAPCDAAAEEIDVATAIDR
                     FQAVVSWPVERVERSWAGLRSFAPDRLPIYGFAADEDCFFWCAGQGGFGIQTSPAAAK
                     MGASLLLREEPHSTIKSIDPSVFSPKRLTDRSLQEKRGGAG"
     gene            5865..6338
                     /locus_tag="VE968_06540"
     CDS             5865..6338
                     /locus_tag="VE968_06540"
                     /EC_number="3.4.23.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007684264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HZU51515.1"
                     /translation="MFNAVFTDLLLVWLAATLLVAAVIDARTFTISNRLNLTVALAAP
                     VYWFSIALTPWPGVAIQLAAGAITFTVLAGAFYAGMMGGGDVKLAAALSLWFSPASTV
                     RFLVLMSLAGGVLTLGLVAWHRAKRREGRPEIPYGVAIAFGALAILTQRFLNQFV"
     gene            6385..>7110
                     /gene="cpaB"
                     /locus_tag="VE968_06545"
     CDS             6385..>7110
                     /gene="cpaB"
                     /locus_tag="VE968_06545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly protein CpaB"
                     /protein_id="HZU51516.1"
                     /translation="MDVKKLALLVGALVVAVITAVMARNMFAGAGAQQAAASPMVPVG
                     PKILVAKKALPAGTIIDADSFALQPWPKELMQSAYYVEGQSDGDPKKLLGTVVRYPIT
                     AGQPVTRGSLVGPQDRGFLAAALGPGMRAITVPVNVSSSVAGFVFPGDHVDLVLTQQV
                     QGGGDGSPLKVSETIIRNLRVLATDQRISDKDEDGKTQVKTFSNVTVEVTPKIAEKIA
                     VAQSLGSLSLSLRSIADNTADLER"
BASE COUNT         1376 a         2181 c         2110 g         1443 t
ORIGIN      
        1 acaccatgct cgatggtcgt cgggcgctcg atcagccgtg catcgatttc gcggaaacct
       61 gcgtcttcgt acacacgcgc gaactcctcc ggcgaagcgt accagttgct ggcctcgatt
      121 ggcggcacaa atcctcgaat gatcaactcc tcgtcgagcg cttcccgaag cctctcaagg
      181 ttgccttcgc cccccatttc gcccgcaaag cgggcgcaag gcttcaatgc gcggaaagtc
      241 gcccgggccg cctgttcctt ctgaagtacc caatgtagcg tcgcattcga aaaagccgcg
      301 tcgaactcgg aaaaaaactg catatcttct gccgcaagaa gcaaggcatc aacgccgttt
      361 tgacgagctg caacgatcat ctcgggtgaa ttgtcgacgc cgaggacggt cgctccgcgt
      421 tcgacgatcc tcttggtcaa ggtgccatcc ccacacccga cgtcgaggat cctttcaccc
      481 ggctgcggat caagaagatc gagcgccgcc ccccccagct cggcgacaaa ggcaccgacc
      541 cgagaatagt cggcggcatt ccactggctc gtcgaacctc tggtcaaagc gtctttaccc
      601 agtcacgata gccagtctca tccatgagac cattgagttc ggcggggtcg tcgagcttca
      661 gcttgaagaa ccacccctcg ccttcagggt cgctgttgac gaggctcggg tcatcgccaa
      721 tggcctggtt tccttcgatg acctcacccg aaaccggcgc gtaaacatca gacgccgctt
      781 tcaccgactc gacgactgct gcttcctcgc ccttgctgag ctttcggccg gcctccggta
      841 cctcggcgaa tacgatgtcg ccaagctgct cctgagcatg gcttgaaata ccaatcgttg
      901 cagtgtcgcc atcgacacgg atccattcgt gctccttggt gaagtagaca ggcatcaggc
      961 agctcccttg cgatgataac ggtgcggaac gaaaggcatg ggcgcgacgc gcgcatcgaa
     1021 cagtttgccg cgttgctcga gcttcaccat cgtgccttgt tcggcgagat gggccgcgat
     1081 gtagcccatc gcgatcggcc gctggagcga aggagagaaa cctccgctcg tgatcttgcc
     1141 gacttcattg ccctcgccgt cgagaacgag tgcaccttca cgaaccggtt gccgcccgac
     1201 aacgtcaaat ccaacacgct tctcgacggg gccgttctcg agttcggcaa gaatgcgaaa
     1261 ggcacctgga aagccccctt cggcgcggcg ccgcttgttg atcgcaaacg tcagcccggc
     1321 catgactggt gtagtgctgg tatcaagatc atggccgtag agcggaagtc ccgcttcgag
     1381 ccgaagtgaa tcgcgcgctc cgagaccaat tggtcttgca agctcatgct ctgccacggc
     1441 gtcagcaaag cttgcggccg cgcgcgccgg aatggacact tcgaaaccgt cttcgccggt
     1501 gtagcccgag cgactgatcc agaggttgtg gttctcccaa gaaaagggtg cagcctccat
     1561 gaacgcaagt ttgctgatgc ccggaacgat tgtttcgagg acttcggcgg cgcgtggtcc
     1621 ctgcagcgca agcagcgcct gctccttcat gtgatcaatg acgatctcgc gcggaagtcg
     1681 gttttccatg aaggcaatgt cgccgtgctt ggttgcacca ttcacgacca gataaaattg
     1741 attgcctcgc cgcgttgcca tgaggtcatc gatgattccg ccattctcct cgaggagcag
     1801 ggaatatttg ggcttcatgt cggcagctga ctggaagtca gcgggcatca ggctttccaa
     1861 ggccgtgtct agcgcatggc cgtggatcag gagctgcccc atgtggctga catcgaagag
     1921 gccagcattt tcacgagtcc agagatgttc agcaatgatg ccttcgtatt ggaccggcat
     1981 ttcatagccc gcgaacggca ccattcgagc accacgagcg cgatgccacg aatccagcgg
     2041 aagtctctct agctgcttgg cagcaacgtc gtcgccgccc tgagggtcgc cgctgaaggc
     2101 tgtaccccgt gcctgcgtat catcggtcgg accgttgtga acttccctgc tcattgattc
     2161 gcgctccggc attgaggtgc gactgccatg gctgacgctt tagccaggcc gccgcccccg
     2221 tctgtctttg cgcctgagag ctttgcccct tcggcggcca cggattgaca cccgcagcac
     2281 tttccagact gtctgaaccg cgcggtccct ggtgcctgag agattccggg ggcggttgct
     2341 ccttcggcgt tggctttcgc cacactctcc cgcgcggcca ttccggttgc ctaggctccc
     2401 ggcgacgccg gctgccttgg ctggccctcc ggttcaagtc aacgtgggtt tcggtgagtt
     2461 cttagcgcgt tgcgttatac ttgaactggt cctgcgtgag ctcgaaaccc accaggtgct
     2521 cgaaagtgga gttcgcaacc gcccgcgcga cgcccggatc ggacatggga tcgatcgcgg
     2581 cgtcggcctc gcccgccttg cgcggacgcg tgagaattgc acgaacgttg gccgggagcg
     2641 ttgccgaagc ccgattgacg cgaatgcttg cctctccagt cgtgatcgcg tgctggctgc
     2701 ctgccggaaa gttcaaggcg atcgctccga cctgttttgc ctcgatgttc gtgccaccgc
     2761 gcagcgcgac atcgaaataa ggaagaatca cctgccgcgc gggtcctgca tcgcgccgca
     2821 atccagtaac ggtgaatgtc acggtagaaa tgacgtcatt gcccgtgtcc tggcaaaacg
     2881 agcggagctt ggtgattgca gcggtaacgt cgattgcact cgagtcgcgg ctttcgggtg
     2941 gattgaagag cgtgatgtca ccggtgccgg tcgggatccc cgcgattggg cagtcgcttc
     3001 gaaccgcata taccccgcct ccattgtcgg cagtgatgtc accggcgtgg cggcaggcgc
     3061 tgagaagggt cagcgcgacg agagcagcag tacgaagctt cactttggga gcattcctca
     3121 tgggcaaact ggcccgcgtt cataggaagg gccttctatg gctgcaagcg atgccttaca
     3181 tggcctgcac cgtggatgaa ttacctcccc ttcgtgtcct catcgccgcg ccgcgcggat
     3241 tctgcgctgg agtcgaccgg gcaatccaga tcgtcgagct cgcgctcgaa cgcttcggtg
     3301 cccccgtcta cgtgcgccat gaaattgtcc acaaccgctt cgtcgtcgag cggcttcgcg
     3361 caatgggcgc tgttttcgtc gatgaacttg atgaagtgcc aagcgaccgg cccgtcgttt
     3421 tctcagcgca cggtgtcccg aagtccgtcc ctgaagcggc gcaagcccgc aacctcacct
     3481 atgtcgatgc aacttgcccg ctcgtctcga aggtccatcg tcaggcggag cgactgattg
     3541 gagagggtcg ccacatatta tttatcggcc atgccggcca tcctgaagtg atcggcacct
     3601 tcggccaggt gcccgagaat tcgatcactt tgatcgagac ggttgaagac gccgagagcg
     3661 cagccgtgcc gacaaccgaa agtcttgcgt tcctgaccca gacgacgctt tcggtcgatg
     3721 acacccgggc gatcatcgaa gctcttacga ggcgcttccc gtcaatccgc gcgccgcgga
     3781 gcgaagacat ctgttatgcg acctccaatc gccaggcggc agtcaaggca atcgcgagcg
     3841 aatgcgagcg aatgcttgtc atcggcgcgc cgaacagcag caactcgttg agactcgccg
     3901 aagtcgccga gcggatgggc gtaccggcgc ggctcatcga gcgtgcaacg gacatcgatt
     3961 gggaatggct tggaaaacca caaagcattg gggttactgc cggtgcatca gctcccgaaa
     4021 tactcgttcg ggaggtcatc gaagcactgg cattgcggtt cacggtttcg gaggaaatca
     4081 ccgatcacag tcccgagcgg atggtcttca aactaccccg tgagctcgtc tctgagcgcg
     4141 ctgcctgaag tcgacatttt taccgacggc gcatgccgcg gaaaccccgg accgggtggc
     4201 tggggcgtac tcctgcgcat gggcgcgaag gaacgcgagc tcgccggtgg agagccgttg
     4261 acgaccaaca accgcatgga actgcttgcc gcaattaaag gccttgaagc gctgaagaag
     4321 ccctgccgag tgaagctaca taccgacagc atttacgttc gcgacgggat cacgcggtgg
     4381 gtccagaact ggcaacggaa tggctggaag acgtcggaca aaaagcccgt aaagaatgcg
     4441 gagctttggc aggaactgat caatgcggct gctcctcaca tcatcgagtg gcggtgggta
     4501 aagggacaca gcggccaccc tgaaaatgac cgtgtcgacg cactcgcctg cgaagcagcc
     4561 gacgaacaac ggcggcatca tcgcctgtga accaaagttc actttcgata cgtttgggcg
     4621 aggattaggg agcgggcgtc accgactctc tcgttcccct gttggaaagt tggtgagggg
     4681 aggcgttaac ccgcgcctcc ccgcttttcc tgcaaactgc gatccgtcaa tcgcttcggt
     4741 gaaaacacgg atgggtcaat gctcttgatg gtggaatgag gttcctccct caaaagcaag
     4801 gaggcgccca tctttgcagc tgccggcgac gtttggattc caaaaccgcc ctgccctgcg
     4861 caccagaaga agcaatcctc atcggcggca aagccgtaga ttggaagccg atcgggagcg
     4921 aaacttcgta atccagccca gcttcgttcg acccgctcga ccggccacga aacgacagct
     4981 tgaaaacgat cgatcgcggt agcgacgtcg atttcttcag cggcggcatc acagggagcg
     5041 ctctcgattt cgtcgtgcgg acttagccac aaggtccggt cgccctcgcc cttgaagtag
     5101 aaggtgccgt cggcatcatc gacaagcggc aggtccttaa gaccactctt gcccacccgc
     5161 agctgcacca tcgtgcgccg ttttggtttg acttcgaggg gagcgacgcc gcaggcgatc
     5221 gcgacgctat cggcccaagc tccggctgcg ttgacgagga tggatgcgcg aaggctcgtc
     5281 ccgtcgacaa gatcgacgat ccatgcattg gcgacccttc gcgcgcgcgc cagtctcgat
     5341 gacgtcgcga tcgtgccgcc cagcttgcga tagcttctga ggaatgcgcc atggagcgcg
     5401 gcaacatcga tgtcggcgca tccgggttcc aagagcgcgc ggcgccattc cggcttgata
     5461 tcgggaatga agcgctcaag ttccgcgcgt tcgacaacgc gggtctcaac cgagcgaggt
     5521 agttcgggaa gctcatcccg ggtcaagtga aggtcgccgc gagttctgag aaaaccgtga
     5581 tcggcaaatt cccgaggtgg cttgtcgaga aacggccgcg aagccttgct cagcttggcg
     5641 acttcaggac cgccataact ctcaagataa aaggcggccg agcggccggt cgagtgatat
     5701 ccgcaatatt cctccgcttc gatgatcagc gttcgatgct tgccggcaat ctctgatcca
     5761 aggcttgcgc cggcgatgcc gccgccgacg atgatggtgt caaaatcgct cattggaacg
     5821 gctggttacg aattggaaag ccgcgccgtc tagtggtgcg catcatgttc aacgccgtat
     5881 ttaccgatct gctgcttgtt tggctcgccg ccacgctgct cgttgcggca gtaatcgacg
     5941 cgcgcacgtt cacgatttca aacagactca acctcaccgt tgccctcgct gctccggtct
     6001 actggttttc gatcgcgctc acaccgtggc ccggtgtcgc aattcagctc gctgcgggtg
     6061 cgataacatt cacggtcctt gccggcgcct tttacgcggg aatgatggga ggaggcgatg
     6121 taaagctcgc ggcagccctg tcactctggt tttcgcccgc gtcgaccgtg cggtttcttg
     6181 ttctcatgtc tcttgcaggc ggcgtgctga cgctgggcct tgtcgcgtgg catcgcgcga
     6241 agcgccgcga gggacgtcct gaaattccgt atggggtcgc gatcgccttc ggcgcgctcg
     6301 cgattctcac ccaacggttt cttaaccaat ttgtctgatt tctgaggctg ttcaagtggc
     6361 ccgtttgggg gaggcgatct cgccatggat gtgaagaagc tcgcgctgct cgttggagcg
     6421 ctggtcgttg cggtcattac cgccgtgatg gccagaaaca tgttcgccgg tgctggtgcg
     6481 cagcaagctg ctgcgtcacc gatggtaccg gttggaccaa agatactcgt agccaagaag
     6541 gctctgcctg caggcaccat cattgatgct gacagcttcg cgctccagcc ctggcccaag
     6601 gagctcatgc agagcgccta ttatgtcgag ggtcagtcgg acggcgatcc caagaagctt
     6661 ctgggcacgg tcgttcgcta tccgatcacg gccggccagc cggtcactcg gggttcgctc
     6721 gtcggaccgc aggatcgcgg ctttctcgcg gcagcactcg ggcccgggat gcgcgccatc
     6781 acggttccgg tgaacgtttc ctcgagcgtc gcgggcttcg ttttccccgg tgaccatgtc
     6841 gacctagtcc tgacgcaaca ggtacaaggc ggcggcgacg gatcgccact taaggtctcg
     6901 gagacaatca tccgcaacct gcgcgtgctt gcaaccgacc agcgcatcag cgacaaggat
     6961 gaagacggca agacccaggt caagacgttc tcgaacgtca cagtcgaagt cactccgaag
     7021 atcgccgaaa agatcgcggt cgcgcagagc ctcggctcgc tgtcgctttc cctgcgctcg
     7081 attgccgaca ataccgccga cctcgagcgc
//
LOCUS       DASRBJ010000235         8145 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_174113,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000235 DASRBJ010000000
VERSION     DASRBJ010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8145
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174113"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..410)
                     /locus_tag="VE968_06550"
     CDS             complement(<1..410)
                     /locus_tag="VE968_06550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51517.1"
                     /translation="MNRLRSAIALLLISAATIDARASASAVDPALYSSLHWRLLGPFR
                     AGWAEMIQGIPGKPNSFIFGASGGGVWRTDDAGQTWSSLFDKGSSSAIGAIAVAPSNP
                     NVIYIGGGQPEPRYDVESGRGVYKSTDGGRTWTSV"
     gene            547..1377
                     /gene="ppk2"
                     /locus_tag="VE968_06555"
     CDS             547..1377
                     /gene="ppk2"
                     /locus_tag="VE968_06555"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008831596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006793 - phosphorus metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HZU51518.1"
                     /translation="MSGDSKLSNSEYEELQEPLARELSAMARWVSEAGRRMVILFEGR
                     DTAGKGGSIEMFSRVLNPRQCRIAALPSPDERERTEWYFQRYVAHLPASGEIVLFDRS
                     WYNRAGVEKVMGFCTPEQTAAFLDAAPDFEHHLVADGILLFKYWLCCDQAVQEQRFEH
                     RLNNPMKRWKLSPIDLEARHRYEEYTQARETMLAATHTDFAPWTLIDFNDQPVGRLTL
                     LRDLLDRVPDVELPLAQIDWPPLGHEPLREHYGVLKPIPNYPVEGKHKHRHHHDEKVN
                     "
     gene            1396..2085
                     /locus_tag="VE968_06560"
     CDS             1396..2085
                     /locus_tag="VE968_06560"
                     /inference="COORDINATES: protein motif:HMM:NF027640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4956 domain-containing protein"
                     /protein_id="HZU51519.1"
                     /translation="MRAGKLLLQITLYYLVIALVVFAALRLWPPLRGYLPIGGVEQLI
                     TQPSKNPLQASEAVRAAHVANFGQSVFWLVVAMIAAIIVSLPISWTYMAVRGGDEYDQ
                     SLVNTIIVLPMVVTGIVIIVQNSLALAFSLAGIAGAVRFRNSLKSSGDALFILLAVAV
                     GLSAGIGAIELAAVISIFFNYCFALLWVTEYGERKGMKRFLADYDGSDAASLVVVEKA
                     GAVVVNENTTT"
     gene            complement(2078..3088)
                     /locus_tag="VE968_06565"
     CDS             complement(2078..3088)
                     /locus_tag="VE968_06565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51520.1"
                     /translation="MRNAWALLAALALASAAGAKSPEPRALFASDVPIHVTIEGPMAL
                     LASNRAQVPRPATMTVDGVPYPITLTTRGITRRSAATCDFPPLRVTLTRPAPPGSLFE
                     HQHHLKLVTHCRRSADFQQKVLLEYSAYLLYNKMTEQSFRARLANIDYRDEDGRPYIS
                     RVGFFLEDFSDVAKRNGMAPAHLPDTIAGSMLDPASSARFAVFEYMISNYDWSMRAGP
                     KGQPCCHNSRPLALGSTGEIIPVPYDFDWSGLVDAPYSGVPDGIPVSNVRQRTFRGYC
                     AHLSQARAFAASLAPRRNEFLGVFATVPGLDSRNQRNAVSYINDFFNDLETGKIFKNC
                     VR"
     gene            complement(3104..4105)
                     /locus_tag="VE968_06570"
     CDS             complement(3104..4105)
                     /locus_tag="VE968_06570"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HZU51521.1"
                     /translation="MPLLAAQAAAAAVTQTIIAVGDLHGDASAWQMIARAAGLMDARG
                     HWAGGNRLLVQMGDVTDREPDSLAIIHSLQQLQREAPRRGGKVIVLLGNHEAMNLLGD
                     NRYTTAGEYAAFADDQSAARRDRVFEANRGRAREFYKAKNPNISDDEVRAAWMADHPL
                     GWVEHQLAWAPSGELGRWATSNPAIVKIGRTLFVHGGISAEYSTRSLQAVNARVARAM
                     NSADDSATSILSDPLGPLWYRGLVEIDPAAQAARAEMKPPPPPLTQDQELRQVLAALG
                     ADRMVIAHTPSLRGITISGSGRLARIDTGISRYYGGPLTWLEISGDRMIPHSIPRSQ"
     gene            4339..5085
                     /locus_tag="VE968_06575"
     CDS             4339..5085
                     /locus_tag="VE968_06575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007714420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HZU51522.1"
                     /translation="MANWQDPRTTGVTAATVGVPRAARDAGLRSYMLSVYNYMASGVL
                     LTGIIAMLFANSSLISLIVNPATGQATPLFWIALFAPLAIVFVLGFGINRISAGTAQA
                     LFWAYAALVGVQFSSLFLVYTGTSIAQAFFATAAAFLGLSLFGYTTKRDLSGMGTFLI
                     MGVVGLLVAMLLNVFLRSPGLNLAISAIGVLIFAGLTAYDTQKIKSIYFAVAGNGEAI
                     AKTAVIGALNLYLDFINMFLFLLRFMGDRR"
     gene            5398..5751
                     /locus_tag="VE968_06580"
     CDS             5398..5751
                     /locus_tag="VE968_06580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009823845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4186 domain-containing protein"
                     /protein_id="HZU51523.1"
                     /translation="MHDLDDVFRKLAQSPFRARFRLNPKDSAYLEERGLEVVRTHARD
                     FIANRLAPAAPQNDGRQTPMRGHPVFVAQHASATCCRSCLSKWHGIPAGRELTADEQA
                     HVVAAIERWLTSGLQ"
     gene            complement(5760..6395)
                     /locus_tag="VE968_06585"
     CDS             complement(5760..6395)
                     /locus_tag="VE968_06585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HZU51524.1"
                     /translation="MADLIFYTNPQSRGRIIRWMLEEVGQPYETEIIAYDRLKGERYL
                     AINPMGKVPAIKHHDHVVTECAAICAYLADVFPNAMIGPRADEKADYYRWLFYAAGPL
                     EAAVSNKAVGWEPTPERERMFGYGNFDRVVAVIDELLTLRDYACGSRFTAADVYLGSQ
                     IMFPLQFGMLPERESFLRYRDRLQSRPAYKRATQIDDEAVKAMPQMAPQTA"
     gene            complement(6440..6952)
                     /locus_tag="VE968_06590"
     CDS             complement(6440..6952)
                     /locus_tag="VE968_06590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010410646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HZU51525.1"
                     /translation="MSETLEPALPDELDQTAERLMHVLCDKNLSVATAESCTGGMLAA
                     LLTDIEGAGHAFDRGFVTYSKEAKTDLLGILPSLLEQNDAVSEVVARAMAEGALRRSD
                     ADIAIGVTGFAGPGGPGQEEGLVHFALARRDRRTTHIAKHFGPRGRGVIRVQSLKTML
                     DMLEHAVEEV"
     gene            complement(6949..>8145)
                     /locus_tag="VE968_06595"
     CDS             complement(6949..>8145)
                     /locus_tag="VE968_06595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017500712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family metallopeptidase"
                     /protein_id="HZU51526.1"
                     /translation="VVLVNDPDFEATPGEPVAGKFGGKAMTYYGRWTYKYEEAARQGA
                     AGVIIIHETAPASYGWDVVQNSNTNAQFDIVRSSPAAAHTPFESWIQRPLAVQLFQRS
                     GLDFEQAKRAARRADFRPIPLKATLSARFAANPQVIASHNVVGILPGTKYPDETIIYS
                     AHWDHLGIGKPDATGDRIYNGAVDNATGVSELIEQARVFAHQPRTQRSIVFLAVTGEE
                     KGLLGSGYYAAHPLYPLAKTVANLNVDAWIPDGLQRNFTIRGTARLDLADDIIAEGKR
                     QGRYFTPDPHPETGGFYRSDHFSFAKMGVPAVSFSEGLDLVNGGTARGEAIAQEYNAK
                     HYHQPSDEWHADWDWSGVAQNAELLHQVGLRLANSREWPNWSADSEFRAARDQSAAER
                     SPGGRG"
BASE COUNT         1613 a         2400 c         2433 g         1699 t
ORIGIN      
        1 acgctggtcc aggttcgacc gccgtcggtc gacttgtaga ctccgcggcc agactcgacg
       61 tcatacctcg gctctggctg cccgcctccg atgtagatta cattgggatt cgagggcgcg
      121 accgcgatcg ctccgatcgc ggaacttgat cccttgtcga agagggaaga ccaggtctgc
      181 ccagcatcgt ccgttcgcca gacgccgccg cccgatgcgc cgaagatgaa gctgttcggc
      241 ttgcccggga tcccctggat catttctgcc catccagcgc gaaagggccc aagcagccgc
      301 cagtgaagag aggaatagag cgccgggtca actgcggatg cagacgcacg agcatcaatc
      361 gttgcagcag agatcagcaa cagagcaatt gcagagcgta gacgattcac gggcatgatc
      421 cctcgggctt ccagtttgaa cggaaacgct aagcggacgg ggcgcgcgct gcaatcgatc
      481 gtgacgaacg ctgtttcaat caccgccttc ccatgcaaca aaagcccatt cagcaggggg
      541 gcgctgatga gcggcgacag caagctcagc aattcggagt atgaagaact ccaggaaccg
      601 ctcgcaagag agctgagcgc catggctcgc tgggtatccg aagccggtcg acgaatggta
      661 atcctattcg aggggcgcga caccgcgggg aagggcggct cgatcgagat gttctcgcgg
      721 gtgctcaacc cccgtcagtg ccggattgcg gccttgccga gcccggacga gcgcgaacga
      781 accgagtggt atttccagcg ctatgttgca cacttgccgg cgagcggtga gatcgtcctg
      841 tttgaccgca gctggtacaa tcgcgcgggc gtcgagaaag tgatgggctt ttgcacgccc
      901 gagcaaaccg ccgcttttct cgacgcagcg cccgacttcg agcaccatct cgtcgccgac
      961 gggattctcc tgttcaaata ctggctgtgc tgtgaccagg cagtgcagga gcaacgcttc
     1021 gagcaccggc tcaacaatcc aatgaaacgg tggaagctat cgccgatcga tctcgaggca
     1081 cgacatcggt acgaggagta tacacaagct cgcgaaacga tgctcgcggc aacgcacacc
     1141 gattttgcgc cgtggacctt gatcgacttc aacgatcagc cggtcgggcg attgaccctt
     1201 ctgcgtgacc tcctcgaccg cgtacccgac gtcgagctac cgctcgcgca gatagactgg
     1261 ccgccacttg gacacgagcc gctgcgtgaa cattatggcg tgcttaagcc gatccccaac
     1321 tacccggtcg agggcaagca caagcatcgc caccatcatg atgaaaaggt gaactgaaga
     1381 gcgttggagg gacaaatgcg cgcggggaag ctgcttttac agattacgct ttactatctc
     1441 gtcattgcgc ttgtcgtgtt tgccgcgctt cggctctggc cgcccctgag gggctacttg
     1501 cctatcggcg gcgtcgagca attgatcacc cagcccagca agaatccgct gcaggcaagt
     1561 gaggctgtcc gagcagcgca cgtcgcgaac tttggccaga gcgtcttctg gctggtcgtc
     1621 gcgatgattg ccgcgatcat tgtttcactg ccgatcagct ggacctacat ggcggtccgc
     1681 ggcggtgacg aatatgatca gtcccttgtc aacacgatca tcgtccttcc aatggtcgtg
     1741 acgggcattg taatcatcgt ccagaactcg cttgcgcttg cgttcagcct cgccgggatt
     1801 gccggagcgg ttcggttcag aaactcgctc aaaagctccg gcgatgcctt gttcatcctg
     1861 cttgccgttg ctgttgggct atcggcgggc atcggagcga tcgagcttgc cgccgtcatc
     1921 agcatcttct tcaattactg tttcgcgctg ctgtgggtca cggaatatgg tgagcgaaaa
     1981 ggaatgaagc gcttcctcgc ggactatgat gggagcgacg ctgcttcatt ggtcgtggtc
     2041 gagaaagccg gcgccgtcgt ggtcaacgaa aacacgacta cctgacgcaa ttcttgaaga
     2101 ttttgccggt ctcaagatca ttgaagaagt cgttgatata gctcaccgca ttgcgctgat
     2161 tgcgggaatc gagccccggc accgtcgcga acacgcccaa aaattcattg cgcctcggcg
     2221 caagagacgc agcgaatgcg cgcgcttggc tgagatgcgc gcaataacca cgaaaggtgc
     2281 gttgccgaac gttgctgact ggaatgccgt cagggacgcc ggaataggga gcatcgacca
     2341 gtccggacca atcgaaatcg taaggaacgg ggataatttc gccggtcgaa cccagcgcga
     2401 gtgggcgact gttatggcag caaggctggc cttttggccc tgcgcgcatc gaccaatcat
     2461 aattgctgat catatattca aagacggcga accgagcact gcttgctgga tccagcatcg
     2521 agcccgcgat cgtgtcgggt aggtgcgcgg gagccattcc gttgcgcttc gcgacgtcgc
     2581 tgaagtcttc gaggaaaaat cccacgcgcg agatgtatgg gcgtccgtcc tcatcgcgat
     2641 aatcgatgtt tgcaaggcga gctcggaagc tctgctcggt cattttgtta tagagcaggt
     2701 aggctgaata ttcgagcaga accttctgtt ggaaatcggc tgatcgccgg cagtgagtga
     2761 cgagcttcaa atgatgctga tgctcaaaca gcgagcctgg cggcgctgga cgggtaaggg
     2821 taacccttag tggcgggaag tcgcatgtcg cggctgacct tcgcgtgatg ccgcgagtcg
     2881 tcagcgtgat tgggtagggg acgccgtcga ccgtcatggt cgccggacgc ggaacttgag
     2941 cgcggtttga cgcgagtagg gccatcggtc cctcgatcgt gacatggatc ggaacatcac
     3001 ttgcgaagag cgcgcgcggt tccggtgact tggctccagc agccgatgca agcgcaagtg
     3061 cagcaagcaa ggcccaagca tttctcatgt cgcctccatc atctcattgc gagcgaggga
     3121 ttgaatgcgg gatcatccgg tcaccgctga tctcgagcca agtgagtggt ccaccgtagt
     3181 agcgcgatat gccggtatcg atccgagcaa gcctgccgct gccgctgatc gtaatgccgc
     3241 gcaggcttgg cgtgtgcgcg atcaccatcc gatcggcacc taaagccgcg agcacttgcc
     3301 taagctcttg gtcttgcgtc agcggtggtg gcggaggctt catctcggca cgcgcggcct
     3361 gcgcagccgg gtcgatctcg acgaggccgc ggtaccacag cgggcccagc ggatcggaga
     3421 ggattgatgt tgcactgtcg tcggcggaat tcatcgccct agcgacgcga gcattcaccg
     3481 cttgcagcga ccgcgttgaa tattcggcac taatgccgcc atgcacgaac aaggtgcgcc
     3541 cgatttttac gatcgccggg ttgctcgttg cccagcgacc cagctctccc gacggcgccc
     3601 aggcgagttg gtgctcaacc cagccgagcg gatgatcagc catccacgcc gcgcgaactt
     3661 catcatccga gatattggga ttctttgcct tgtagaactc ccgcgcgcgg ccgcgattgg
     3721 cttcaaagac tcggtcgcgt cgagccgccg actgatcatc ggcaaaggcc gcatactcgc
     3781 ccgccgtggt gtatcgattg tcgccgagga gattcatggc ctcgtgatta ccaagcagaa
     3841 cgatgacctt gccgcctctt cgcggggctt cgcgctgaag ctgttgcagg ctgtgtatga
     3901 tggcgagtga atcgggttcg cggtcggtga cgtcgcccat ctggacgagg agcctattcc
     3961 caccggccca gtgcccacgg gcatccatga gcccggcagc acgtgcaatc atctgccatg
     4021 ccgaagcatc gccgtgcaga tcaccaactg cgataatcgt ctgcgtgacc gctgccgcgg
     4081 ctgcctgtgc agccaagagc ggcatcagca gtgccgcaat gatcaaggcg ggccgtcgaa
     4141 acaaggcacg tgctcccccg agcgacggga ggcactgtcg cactgagacg cgtcggcagc
     4201 aatcccgtta atcccttgtt ctgcaatggt cgacgaacag gcaattgctg tcgatcggat
     4261 tcgcttgaag tcctcttgag catcaacgat atatccgacg ttagcgaacg ggccttttgc
     4321 ccgcgcgaag gagatagaat ggccaactgg caagacccgc gaacgaccgg cgtaaccgcc
     4381 gcgaccgtag gcgttccgcg cgccgcccgc gatgcgggcc tgcggtcgta catgctttcc
     4441 gtttataact acatggcttc tggcgttttg ctgacgggca tcatcgccat gcttttcgcc
     4501 aatagcagcc tcatcagctt gatcgtgaac cccgcgaccg ggcaagcaac accactattc
     4561 tggatcgcgc tgttcgcccc gctcgcgatc gtgttcgttc tcggcttcgg cattaaccgc
     4621 atttctgccg gtactgcgca ggcgctcttc tgggcttacg ccgcactggt tggagtgcag
     4681 ttctcaagcc tctttcttgt ctacaccggc acgtcgattg cgcaggcatt ttttgcaacg
     4741 gcggcagcgt tccttggctt gagcttgttc ggatacacga cgaagcgtga cctttcggga
     4801 atggggacat tcctgatcat gggagttgtt gggcttctcg ttgcaatgtt gctcaacgtc
     4861 ttcctgcgtt caccgggtct gaaccttgcg ataagcgcaa tcggagtgct gatcttcgcc
     4921 gggctcaccg cctatgacac gcagaagatc aagagcatct attttgccgt tgctggcaac
     4981 ggcgaagcca ttgccaagac tgccgtcatt ggcgcgctca acctttacct cgacttcatc
     5041 aacatgttcc tgttccttct ccggttcatg ggcgaccgac gctaaccgga aagaagaata
     5101 tgcgaagtgg gccggcggaa gcggatccgc cggccttttc gttgacgtcg agggtaattc
     5161 cggtcccgcc cgtttgggtt caagcggaag taggcgggac cggacttgtg caagcacccg
     5221 ggggtaaggc ttgggtgcga aaagcggttt aacagcctcg gcgttaagct ccgtcaaagg
     5281 gaattggtta gcgccatata aggaattgct tcgccgcgtt gcttcgccag ttcggtgatc
     5341 acgacgtcgc ggaaacttgc ttcgagcagc ctgttaaccc gctttgagtc tcaccgcatg
     5401 cacgatctcg acgatgtctt ccgaaaactt gcgcaatctc ccttccgagc gcggttcagg
     5461 cttaatccca aggattcggc ctatcttgag gagcgcgggt tggaggtcgt tcgaactcac
     5521 gctcgggact tcattgccaa tcgcctcgcg ccggctgcac cgcaaaatga cggacgccag
     5581 actccaatgc gcggccatcc cgtcttcgtc gcgcagcatg cgtcggcgac gtgctgccga
     5641 tcgtgcctgt cgaagtggca cggaataccg gctggccgcg agcttacggc cgacgaacag
     5701 gcacatgtcg ttgcggccat tgagcgctgg ctaacgagcg ggctccaata gcttgcttgt
     5761 caggctgtct gcggcgccat ctgcggcatc gccttgacgg cttcatcatc gatttgcgtt
     5821 gctcgcttgt acgcgggtcg cgactggagc cggtcgcggt atctgaggaa actctcgcgc
     5881 tcgggcagca ttccaaattg cagcggaaac atgatctgtg agccgagata cacgtcggca
     5941 gcggtgaaac gactgccgca cgcataatcg cgaagtgtaa gtagttcgtc gatgaccgcg
     6001 accactcgat caaaattccc gtagccgaac atacgctcgc gttctggagt cggctcccat
     6061 cctaccgcct tgttcgaaac agcagcctca agcggtcctg cggcatagaa caaccagcgg
     6121 taataatccg ccttctcgtc ggctcgcggt ccaatcatcg cgtttgggaa tacatccgca
     6181 agataggcgc aaatcgctgc gcactcggta acgacgtgat catggtgctt gatcgccggc
     6241 accttgccca tcggattgat cgcgagatag cgttcaccct tcagccgatc ataggcgatg
     6301 atctccgttt cgtacggctg acccacttct tcgagcatcc accgaattat tcgtccgcgt
     6361 gactgtgggt tggtgtagaa gatgagatcg gccatccatg cttctcctgt ccggcgataa
     6421 aatcagaaca aaacacgaac tatacttctt cgaccgcatg ctcaagcatg tcgagcatag
     6481 tcttgaggct ttgcacgcgt atgacaccgc gacctcgtgg accgaaatgc ttcgcgatgt
     6541 gcgttgtacg acggtcgcgc cttgcgaggg cgaagtgaac gaggccctct tcctggccag
     6601 gacccccggg acccgcgaat ccggtgacgc cgatcgcaat atccgcgtca cttcgacgaa
     6661 gcgcgccttc agccattgcg cgcgccacga cttcagaaac cgcatcattt tgttcgagga
     6721 gggacgggag gattccgaga agatccgtct ttgcttcctt tgaataagtg acgaacccgc
     6781 gatcgaaggc atggccagcg ccttcgatgt ccgtgagcaa ggctgcaagc atgccgccgg
     6841 tgcagctttc ggccgttgcg acgctaaggt tcttgtcgca aagaacgtgc atcagccttt
     6901 cggccgtctg gtcgagctcg tcgggaagag caggctcaag cgtttcgctc aaccgcggcc
     6961 tccgggtgac cgctcggctg ccgattgatc acgtgccgca cgaaactcgc tgtcggcact
     7021 ccaattcggc cactcgcgtg agtttgcaag ccgcaggccc acctggtgca gcagttccgc
     7081 gttctgcgcg actccactcc agtcccagtc cgcatgccat tcatcacttg gctggtggta
     7141 atgcttggca ttgtattcct gcgcgatcgc ctccccacgt gcggttccac cgttcacgag
     7201 gtcaagtcct tcggagaagc tcacggccgg tacccccatc ttcgcgaacg agaaatggtc
     7261 cgagcgataa aagccgccgg tttcggggtg tggatccggg gtgaagtagc gtccctgtcg
     7321 tttaccttca gcgatgatgt catcggcaag atcgagccgc gccgttccgc ggatggtgaa
     7381 gtttcgctgc aaaccgtcgg ggatccaggc gtcgacgttg aggttggcga cggtcttcgc
     7441 gagtggataa agagggtgcg ctgcgtaata gccggagcct agcaggcctt tttcttcgcc
     7501 ggtcactgca agaaaaacga tcgatcgctg cgttcgcggc tgatgagcga aaacacgagc
     7561 ctgctcgatc agctctgaaa cgccggtcgc gttatcgacc gcgccgttat agatgcggtc
     7621 gccggtcgca tccggcttgc caatccccag atggtcccag tgagccgagt agatgatcgt
     7681 ttcgtccgga tatttggtgc cgggcaggat cccgacgacg ttatgactag cgatgacctg
     7741 cgggttggcg gcgaagcgcg cggaaagagt tgccttcaag gggatcgggc ggaagtcggc
     7801 gcggcgggca gcgcgcttcg cttgttcaaa gtcgagacct gagcgctgga acagctggac
     7861 ggcaagtggc cgctggatcc agctttcgaa cggcgtatgt gctgctgccg ggctgctgcg
     7921 cacgatatcg aactgggcat tggtattcga attctggacc acgtcccagc cgtaggacgc
     7981 cggagcggtc tcatggatga taatcacgcc ggcagcaccc tgccgtgccg cttcttcata
     8041 tttgtaggtc cagcggccgt aataagtcat tgccttgcca ccgaacttgc ccgcgaccgg
     8101 ctcgcccgga gtcgcttcga aatccggatc attgacgaga acgac
//
LOCUS       DASRBJ010000236         5726 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_633709,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000236 DASRBJ010000000
VERSION     DASRBJ010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5726
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_633709"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..547
                     /locus_tag="VE968_06600"
     CDS             <1..547
                     /locus_tag="VE968_06600"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016746053.1"
                     /note="Catalyzes the rate-limiting step in dNTP synthesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     alpha"
                     /protein_id="HZU51527.1"
                     /translation="AIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFSIKNPYLE
                     KMLKEKAKDSQQVWNSILENGGSVQHLDFLTQEEKDVFKTSFEIDQRWLLELAADRTP
                     FIDQAQSLNLFIPADVDKWDLMMLHFRAWELGIKSLYYLRSKSVQRAGFAGGVEADNT
                     PELKEIKLASTTDYDECLACQ"
     gene            610..1032
                     /locus_tag="VE968_06605"
     CDS             610..1032
                     /locus_tag="VE968_06605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004209930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HZU51528.1"
                     /translation="MKTYDEAKTGAVQRARQLRRASTEAEKKLWRALRSKLPQYKWRR
                     QMPVGPYFTDFACFAEMLIVELDGGQHAAAADKDAARTAFLAAQGYRVLRFWNNDVLS
                     NSDGVLQAIGENLSTSPSHSFAAGPSLSLGRGQLESCQ"
     gene            1029..1157
                     /locus_tag="VE968_06610"
     CDS             1029..1157
                     /locus_tag="VE968_06610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51529.1"
                     /translation="MKRALPIRKVAKGAGAVVLGMIALDLVATIATLAIGATWLRR"
     gene            1142..1375
                     /locus_tag="VE968_06615"
     CDS             1142..1375
                     /locus_tag="VE968_06615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51530.1"
                     /translation="MAPAMTTARMIELAAAVAILAASVWLYRRNRAVDRGYGSQGAVL
                     LLVVGAIMAIHALGFMEYRPSASELEAMKARAR"
     gene            1375..1644
                     /locus_tag="VE968_06620"
     CDS             1375..1644
                     /locus_tag="VE968_06620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51531.1"
                     /translation="MALHVPACLHVACAATQQAGAVVPKAPGFFMGLWHGLIFPLAWI
                     VSLFAPNIAIYAVPNNGGWYDFGYFLGIVVFGVGARHTRVVVRRR"
     gene            1843..2913
                     /locus_tag="VE968_06625"
     CDS             1843..2913
                     /locus_tag="VE968_06625"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004209931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009263 - deoxyribonucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HZU51532.1"
                     /translation="MPLLEASKQYKPFEYPWAFEYWKRQQQIHWMPEEVPLGEDCRDW
                     AQKLTAHERNLLTQIFRFFTQADVEVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHI
                     AAYSHLLDTIGMPESEYSAFLQYKEMKDKHDYLQQFGVDTDEDIARTLAMFGGFTEGL
                     QLFASFAMLMNFPRFNKMKGMGQIISWSVRDESLHCEGIIKLFHTFVKERDCLTPAVK
                     EAIIDQCQKTVRLEDAFIDLAFEMGPVNGMSPKEIKKYIRYIADWRLGQLGFAPVYMV
                     DEHPLPWLAPLLNGVEHANFFETRATEYSKAATRGDWNTVWDNFDRRMKAKAAAANDA
                     KDGDTSGDGEGDMFSAAGVAAE"
     gene            complement(2930..3817)
                     /locus_tag="VE968_06630"
     CDS             complement(2930..3817)
                     /locus_tag="VE968_06630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51533.1"
                     /translation="MVSPKEENDPDDPPVHLRDRFGITPLLDTEIDVAGAGLVGLTAN
                     ADHDLRIDVTSAVIARFLGTSLATARKHIKDVKEHFPKDQIIRELCQLHLHRYDQFYR
                     TIPIRTDGPIGVFAFDLAMIRSRASIELMLVTARQGFLIEPCLIARSLVEQFAYSVRV
                     WGTEDDAIVFLSKPQALIRYLSSINPSAGRAYGMLSRLSHYDPKMHYSFIGSAEKNGD
                     SEESSTVLQRSWKFKIAALAWVFFVLDLKFKVFAWAYGKHENFACLEPLRGSIEEAYD
                     EFFADVDFPAVKEVRTLLS"
     gene            complement(3960..4772)
                     /locus_tag="VE968_06635"
     CDS             complement(3960..4772)
                     /locus_tag="VE968_06635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51534.1"
                     /translation="MRNVLLLLPITCVVLAGCANAKTPVYTIGNVSVNAPIPQDWTCR
                     TLLKNTIDFRINPSQYIGEVITPNDDGTFSIVAKPILALGSKPIEKSFESGSVYDSKI
                     DKKASASGNYLAIVTASLAANQKMDVDIVDAVHASVPPLEYPDDKLFALAKSKSTIKR
                     FWIAELYISTITESVYSDLSGSTNITAPAFGADGKVYQQSSQTTHDYAVAAKLIDIDD
                     YARNHGKASGGPAAQSRKSACPAILPPGLVKGFAPSPPKSFAILPAVAVRPK"
     gene            complement(4902..5546)
                     /locus_tag="VE968_06640"
     CDS             complement(4902..5546)
                     /locus_tag="VE968_06640"
                     /inference="COORDINATES: protein motif:HMM:NF012774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HZU51535.1"
                     /translation="MNQPRPKLPSYFQAPKRIRRGVVTLVLGAVFAGLVGAAAWQRWS
                     DASRPPVDTSAIEWNAVQAVPTRAPDPEDIAWQQRAEAPLPEPVIANPANEPGEAIQS
                     GLPRASGARNDGIYVIDGDTFEMGGQRIRVAGIDAPETHPPRCMDEAWLGLAATEKLK
                     QLLSSGNVTISGSGHDQYGRDLRQVSVDGVDVAQTMIAAGLASSYSGGKRQWWC"
BASE COUNT         1179 a         1785 c         1645 g         1117 t
ORIGIN      
        1 ggcgatcgcg ccgaccgcgt cgatctcgat catctgcggc ggcacgagcg cctgcatcga
       61 gccgatcccg gccaacatct acacgcacaa gaccctgtcg ggcagcttct cgatcaagaa
      121 cccgtatctc gagaagatgc tgaaggagaa agccaaggac agccagcagg tgtggaactc
      181 gatcctcgag aatggcgggt cggtgcagca cctcgacttc ctgacccagg aagaaaagga
      241 cgtgttcaag accagcttcg agatcgacca gcgctggctg ctcgagctcg cggccgaccg
      301 cacgccgttc atcgaccagg cgcagtcgtt gaacctgttc atcccggccg acgtcgacaa
      361 gtgggacctg atgatgctcc atttccgcgc ctgggagctc ggcatcaagt cgctctacta
      421 cctgcgcagc aagtcggtgc agcgcgccgg cttcgccggc ggcgtcgagg ccgacaacac
      481 gcccgagctc aaggaaatca agctcgccag caccaccgac tacgacgagt gcctcgcgtg
      541 tcagtgaaaa tccctctccc gcgggagagg gaaggagccg cgaagcggcg gaagggtgag
      601 gtatagacag tgaagacata cgacgaagcc aagacaggag ccgtacagcg cgcacggcag
      661 cttcgtcgtg cgtcgactga agcggagaag aagctttggc gggcgcttcg ctccaagctg
      721 ccacagtaca agtggcgcag gcagatgcct gtcggcccct acttcacaga cttcgcctgc
      781 ttcgccgaaa tgctgatcgt cgaactggac ggcggtcagc acgcagccgc tgcggacaag
      841 gatgcggcgc ggaccgcctt tctcgcagcg cagggttatc gcgtgctgcg cttctggaac
      901 aacgatgttc tgagtaacag tgacggcgtg cttcaggcca tcggcgaaaa tctctcgacc
      961 tcaccctccc acagcttcgc tgcgggtccc tccctctccc ttgggagagg gcaattggag
     1021 tcatgtcagt gaaacgcgcc ctccccatcc gcaaggtggc caaaggcgcg ggcgccgtgg
     1081 tgcttgggat gatcgcgctc gacctggtcg cgaccatcgc gacgctcgcc atcggcgcga
     1141 catggctccg gcgatgacga ccgcgcgcat gatcgagctc gccgccgcgg tcgccatcct
     1201 cgccgcaagc gtctggctct atcgccgcaa ccgcgcggtc gaccgcggct acggcagcca
     1261 gggcgcggtg ctgctgctgg tcgtcggcgc gatcatggcg atccacgcgc tcggcttcat
     1321 ggaataccgc ccgagcgctt ccgagctcga agcgatgaag gcgcgcgcgc gatgatggcc
     1381 ctccacgttc ccgcctgcct gcacgtcgcc tgcgccgcca cgcagcaggc tggcgcggtc
     1441 gtccccaagg cgccgggctt cttcatgggc ctgtggcacg gcctcatctt cccgctcgcc
     1501 tggatcgtct cgctgttcgc cccgaacatc gcgatctatg cggtgccgaa caacggcggc
     1561 tggtacgatt tcggctattt cctcggcatc gtcgtgttcg gcgtcggcgc caggcacacc
     1621 cgcgtcgtgg tgaggcgccg gtgagccagc ccatacctct cgtcattccc gcgaaagcgg
     1681 gaacccgacc ttacttcgcc agccgcgcag cggctcaacc ggcccatttc ctcacgcaaa
     1741 ggcgcaaagg acgcaaagga gccgcggcct ctgcaaccgc gctgccttcc cttcgcgcct
     1801 ttgcgccttt gcgtgaacca tctttctctc gggagaagta gaatgcccct tctcgaagca
     1861 tcgaagcagt acaagccctt cgaatatccg tgggcgttcg agtactggaa gcgccagcag
     1921 cagatccact ggatgccgga ggaggtgccg ctcggcgagg attgccgcga ctgggcgcag
     1981 aagctcaccg cccacgagcg caacctgctg acgcagatct tccgcttctt cacgcaggcc
     2041 gacgtcgagg tgcaggattg ctaccacgac aagtacggcc gcgtgttcaa gccgaccgag
     2101 atcaagatga tgctgaccgc cttctccaac atggagacgg tgcacatcgc ggcgtacagc
     2161 cacctcctcg acacgatcgg catgcccgag agcgagtaca gcgccttcct ccagtacaag
     2221 gagatgaagg acaagcacga ttacctgcag cagttcggcg tcgacaccga cgaggacatc
     2281 gccaggacgc tcgccatgtt cggcggcttc accgaggggc tgcagctctt cgccagcttc
     2341 gcgatgctga tgaacttccc gcgcttcaac aagatgaagg gcatgggcca gatcatcagc
     2401 tggtcggtcc gcgacgagag cctccactgc gagggaatca tcaagctgtt ccacaccttc
     2461 gtgaaggaac gcgactgcct taccccggcg gtcaaggaag cgatcatcga ccagtgccag
     2521 aagacggttc ggctggagga cgcgttcatc gacctcgcgt tcgagatggg gccggtcaac
     2581 ggcatgagcc cgaaggagat caagaagtac atccgttaca tcgccgactg gcgcctcggc
     2641 cagctcggct tcgcgcccgt ctacatggtc gacgagcacc ccctcccctg gctcgccccg
     2701 ctgctcaacg gagtcgagca cgccaatttc ttcgagaccc gcgcgaccga atactcaaag
     2761 gccgcgaccc gcggggattg gaacacggtg tgggacaact tcgatcgccg gatgaaggcc
     2821 aaggccgccg cggcgaacga cgccaaggac ggcgatacgt caggcgacgg cgagggcgat
     2881 atgttcagcg cggctggagt tgcggcggag tagctgtagg ctagctgctc tagctgagga
     2941 gtgtccggac ctctttgacg gcagggaagt ctacatcggc gaaaaactcg tcataagctt
     3001 cctcgatgga tccccgaagc ggctcaagac aagcgaagtt ctcgtgcttg ccataggccc
     3061 acgcgaatac tttgaatttc aagtcgagaa caaagaacac ccaagcgagc gcggcaattt
     3121 tgaatttcca gctgcgctga aggacggtcg agctctcttc gctgtctccg ttcttttcgg
     3181 ctgagccgat gaatgagtaa tgcatcttgg gatcgtagtg cgacaagcgc gacagcatgc
     3241 cgtaggcgcg gcccgcacta gggttgatcg agctgagata gcgaatgagc gcttgcggct
     3301 ttgataaaaa gacaatcgca tcatcttcag ttccccagac ccggaccgag taagcgaact
     3361 gctccacgag agagcgagca attaaacaag gctcaataag aaagccctgt cgcgcggtta
     3421 caagcatcag ctcgattgat gcacggctac ggatcatcgc gaggtcgaaa gcaaagactc
     3481 caattgggcc gtctgtcctt ataggaatgg tcctatagaa ctgatcgtac ctatgaagat
     3541 gtagctgaca gagctctcta atgatctggt ctttaggaaa gtgctccttc acgtctttaa
     3601 tgtgcttccg agctgtcgcg agcgacgtgc caagaaatct cgcgatgaca gcgctcgtga
     3661 cgtcgatacg aagatcgtgg tcagcgttcg ctgtcaggcc gaccaatcct gctcctgcca
     3721 cgtctatttc ggtgtccagt agaggtgtta tcccgaagcg gtcacgcaag tgtacaggtg
     3781 gatcgtctgg atcattctct tcctttggcg ataccatcta actccccagt atcgtcagta
     3841 ggagtctcca gtgtatcaat catggacatc attccagcat cccccgcttc ttctcgcttt
     3901 cgtaactctg ctgcagacgg ccgacgtcaa atcagccgct acgcccgaaa gccacgatgt
     3961 catttggggc gcacagcgac agcaggaaga atggcaaaag attttggcgg cgacggcgca
     4021 aaacccttaa ctaagcccgg cggcaagatc gctggacacg cggactttcg ggattgcgcg
     4081 gcagggccac cggaagcttt gccatgattc ctcgcataat catcaatatc aatcagcttt
     4141 gccgctacgg cgtaatcgtg cgtagtttgg ctgctctgtt ggtacacttt cccatctgcg
     4201 ccaaatgccg gcgctgtgat attggtgctt ccacttagat cactgtatac gctttcagta
     4261 atggtggata tgtacaactc tgcgatccag aaccgcttta tagtagattt tgactttgca
     4321 agcgcaaaaa gcttgtcatc tggatattcc aaaggcggaa ctgatgcgtg taccgcgtcc
     4381 actatatcca catccatttt ctgattggct gctaagctgg ccgtaactat agcgaggtaa
     4441 ttgccgctag ccgatgcctt cttgtctatc ttgctatcat acactgagcc actctcgaag
     4501 ctcttctcaa ttggtttaga tccgagagct agaatcggct tagcaactat tgagaatgtg
     4561 ccatcgtcgt ttggcgtgat cacctcacca atgtactgtg aagggtttat tctgaagtcg
     4621 atggtgtttt tcagtagtgt acggcacgtc cagtcctgcg ggatcggcgc atttaccgac
     4681 acgttaccga tcgtatagac gggtgttttc gcattggcgc atccggccaa cacaacgcaa
     4741 gtaatcggca gaagaagcaa gacattacgc atcgcggact ccccctaact cgctccgcag
     4801 ggacgcgggc gcgggcggct cgttaaccga gctctagagt cgccaaacgg ctgtttacca
     4861 gaaaattaac gcgcaacaac gatctgatca ttacaaatgc atcagcacca ccactgccgc
     4921 ttgccgcccg aatagctgct cgccaggccg gccgcgatca tcgtctgcgc gacgtccacg
     4981 ccatcgacgg acacctgcct gaggtcacgg ccatattggt cgtggcctga gccgctgatc
     5041 gtcacattgc cgctgctcag cagctgcttg agcttctcgg tcgcggcgag gccgagccac
     5101 gcctcgtcca tgcagcgcgg cggatgggtc tcgggcgcat cgatcccagc gacacggatt
     5161 ctctgcccgc ccatctcgaa cgtatcgccg tcgatcacat agatgccgtc attgcgagcg
     5221 ccggaggcgc gcggcaatcc actctggatc gcttcccccg gctcattggc cgggttcgcg
     5281 atgacaggtt cgggcagcgg tgcctcagcc ctctgttgcc acgcaatgtc ctccggatca
     5341 ggcgcgcgcg tcggcactgc ctgcacagca ttccattcga tcgcggaggt atcgaccggc
     5401 ggtcgcgagg catcgctcca acgctgccaa gccgccgcac caaccaaccc ggcgaacacc
     5461 gcgccgagca ccagcgtcac gacgccgcgt ctgatgcgct tcggcgcctg aaaataagag
     5521 ggcagcttcg gcctcggctg gttcatgccg tgccagcttt gccgctctcc aactgggcgg
     5581 atgcgaccga tcttactttc tggacgccaa tacttgctca tgcgctcgag cgtaagcgcg
     5641 ccatcttacc ctgcagttag cgcgctcatc ctcccgcact cagccgatag gcgttggtga
     5701 tcacaaagtg cgcgatcatg atcgcg
//
LOCUS       DASRBJ010000237         4645 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_738550,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000237 DASRBJ010000000
VERSION     DASRBJ010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4645
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_738550"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3394)
                     /gene="dnaE"
                     /locus_tag="VE968_06645"
     CDS             complement(<1..3394)
                     /gene="dnaE"
                     /locus_tag="VE968_06645"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HZU51536.1"
                     /translation="MLEGAMEPKTVAEKAAKLGFPAVALTDRNGLYGSMPFSEACFGK
                     GVQPIIGSLLAIARPAELGAGAAIDWLALLAKDEQGYSNLCKLVSSAHLERPLEQEPH
                     VALSQVEELSAGLIALTAGNEGAVARLLADGQELKAEAYLDQLQAIFADRLYIELSRQ
                     NDPVEEAAESRLIDLAYARDLPLVATNPAAYPDPSFHAAHDAMLCIANSVYVESQDRP
                     KSSRDAWLKDPAMMSQLFSDLPEALANTLVIAQRCAVAAPKRKPILPRLSADEDEQLR
                     RDARAGLGKRICGRSDEDLQRYSDRLEYELDIITGMGFSGYFLIVADFIKWAKANDIP
                     VGPGRGSGAGSVVAWALTITDLDPLALGLLFERFLNPERVSMPDFDIDFCETHRDKVI
                     SYVQGKYGRDKVAQIITFGRLKARAVLKDTGRVLQMSYGHVDRLAKLIPNHPTDPWTL
                     ERSLNGVAEVAAEYKDPDVKRLFDLAMKLEGLPRHASTHAAGVVIGDRPLAELVPLYR
                     DPRSDMPVTQFDMKYVEAAGLVKFDFLGLKTLSVLKEGQRLLMEQGVEVDYSALPWDD
                     PAVFELLQCGDTVGVFQVESEGMRRTLSAVKPTVFEDIIALNALYRPGPMDNIPMFGR
                     RKNGQEPIEFPHPLLEGILKETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKI
                     KSEMDAQRASFVEGCAKHNGIPTAKANELFDLIDKFAGYGFNKSHAAAYALLTYQTAW
                     LKAHHRAEFYAASMSFDVALTDKLAMFVEDMRRGSVECLPPDLNASEAHFTVENGAVR
                     YALGALKGVGEKAMEALVEERKRSPFTTLEDFAARVDPRQLNRRQLESLAAAGAFDSI
                     NANRPAVFEAAETILAHASAAHDQRTTGQAALFGASSSELAPIRLPRDASWTIAQRMA
                     AERDAFGFYFSAHPVDASRHLLAAHNVKTFADIIDIQINEGERLTATMAGLAEEARWR
                     TSAKGRRYLMATLSDSSGQFIATSFDDDATAALEAAAKTGSCGLLTVELDRRPGDETP
                     RVTIKRFQPLNELAKRTRLQMTVRLADPAMAVPLASELAGSRGANGLLRFLIPLAGGG
                     EAAVIVGRDFVLDAELAARIGRFAGEGSVDLSVQEPPKLALVG"
     gene            complement(3501..4478)
                     /locus_tag="VE968_06650"
     CDS             complement(3501..4478)
                     /locus_tag="VE968_06650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51537.1"
                     /translation="MKDPPHDNASPSSGRTNWSTIILLGALALLVLIVAYFATRGSSD
                     EDKLTNKTVVTSNRASANPEKLCASNATYDLIKRELFRRAAQLRGSDQAAFDRLSSVA
                     VVRMDHPVMENVDTSTGGVNCSGTVSFDLPPGLAVVGGRSTLQSDVDYTVAMAADGSG
                     PVVLLKNADAIVTPLATLAQVNRGAPQQPPDADTASTTGPADSTPPPAEQSAPVQKSA
                     PVAAPPMPAPPSRNVRPSFDCSTARTRGEMAVCNDPGLAALDRQMAAQYSRAFADASP
                     DEREVLRATAQRFYAYRDRCSTSACVADAYAGRMREIRDIMDDRWQPPQ"
     gene            complement(4475..>4645)
                     /locus_tag="VE968_06655"
     CDS             complement(4475..>4645)
                     /locus_tag="VE968_06655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017501823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HZU51538.1"
                     /translation="ADEPTGNLDEKTADTVLSEFLALTRNEGSAALVATHNERLAARM
                     DRVVRLHDGRLE"
BASE COUNT          937 a         1369 c         1400 g          939 t
ORIGIN      
        1 agccgacgag ggccagcttc ggcggttcct gcacggaaag gtcgacgctg ccctcgcccg
       61 caaagcgtcc aatgcgggct gccagttctg cgtcgagcac aaagtcgcgt cccacgatga
      121 cggcagcttc tccgccgccc gcaagaggga ttaggaagcg aagaaggccg ttcgcgccac
      181 gcgagcccgc gagttcgctc gcgagcggca cagccatggc gggatccgcg agacgaacgg
      241 tcatctgcag tcgcgtgcgc ttcgcgagct cgttcagcgg ctgaaatctc tttatcgtga
      301 cgcgcggggt ttcatcgcca ggccggcgat cgagttcgac ggtaagaagg ccgcacgagc
      361 ccgtttttgc agcagcttcg agggcggcgg tagcgtcgtc gtcaaacgac gtcgcaatga
      421 actgcccgga actgtcgcta agcgtggcca tgagatagcg acggcccttt gctgaggttc
      481 gccagcgcgc ttcctcagcc agcccggcca tcgtcgcggt aaggcgttcc ccctcgttga
      541 tttggatgtc gatgatgtcc gcgaacgtct tcacgttgtg cgcggccagt aaatggcgcg
      601 aagcatcgac cgggtgtgcc gagaaataaa agccgaaagc atcgcgctcc gctgccattc
      661 tttgcgcaat ggtccaactg gcgtcacgtg gcagacggat tggagcaagt tcagacgagg
      721 atgcaccgaa caatgccgcc tggccggtcg tgcgctggtc atgcgccgcc gacgcgtgcg
      781 caaggatcgt ctcagcagct tcgaaaaccg cggggcggtt cgcgttgatg ctgtcaaagg
      841 ctccggctgc agcgaggctt tcaagctggc gacgattgag ctgccgaggg tccacgcgag
      901 cggcaaaatc ctcaagcgtc gtgaagggcg atcgttttct ttcttcgacc aacgcctcca
      961 ttgccttttc gccaacgccc ttgagcgcgc caagcgcata tcgcacggcg ccgttctcga
     1021 cggtgaagtg cgcctcactc gcattcaggt cggggggaag gcactccacg gaaccacgtc
     1081 gcatgtcctc cacgaacatt gcgagcttgt cggtgagcgc gacgtcaaag ctcatcgacg
     1141 ccgcgtagaa ttcggcgcga tgatgcgctt tgagccaggc tgtttggtac gtcagcaaag
     1201 cataggccgc tgcatggctc ttgttgaaac catagcccgc gaacttatcg atcaagtcaa
     1261 agagttcgtt cgctttggct gtcggtatac cgttatgctt ggcgcagcct tcgacgaaac
     1321 ttgcgcgctg cgcatccatt tcggatttga tcttcttgcc catggcacgg cgaaggaggt
     1381 ccgcgccccc aagtgagtag ccggcgagga tttgcgccgc ctgcatcacc tgctcttgat
     1441 aaacgaagat gccgtaagtt tctttgagga ttccctcgag cagcgggtga ggaaattcaa
     1501 taggctcctg accattcttc cggcgtccga acattggaat gttgtccatc ggaccaggtc
     1561 ggtaaagtgc gttcagcgca ataatgtcct cgaaaaccgt gggcttaacc gctgaaagcg
     1621 tgcgcctcat gccttccgat tccacctgga acacgccaac ggtgtcaccg cattgcaaga
     1681 gctcgaaaac cgccggatcg tcccagggaa gcgcggaata atcgacctcg acgccctgtt
     1741 ccatgagcag ccgctgacct tccttgagga cggatagcgt cttgagcccg aggaaatcga
     1801 atttgacgag tcccgcagcc tcgacatatt tcatgtcgaa ctgcgtcact ggcatgtccg
     1861 aacgcgggtc acgataaagc ggaaccagct cagcaagcgg tcgatcgccg attacgacgc
     1921 ccgcggcgtg ggtcgaggcg tgtcggggca atccttcgag cttcatcgcg agatcgaaca
     1981 gccgcttgac gtcgggatcc ttatactcgg cagcaacctc ggcaacaccg ttcagcgacc
     2041 gctcgagagt ccacgggtcg gtcgggtgat tggggatcag ttttgcaagc cggtcgacat
     2101 gcccatagct catctggagc acgcggcccg tgtccttcaa caccgcgcgc gccttcagac
     2161 gtccgaacgt gattatctgc gcgaccttgt cgcgcccata tttgccctgg acatacgaaa
     2221 tcaccttgtc gcggtgagtt tcacaaaaat cgatgtcgaa atctggcatc gagacgcgtt
     2281 cggggttgag aaatcgctcg aacagcagcc ccaatgcgag cggatcaaga tcggtgatcg
     2341 tcaaggccca tgcgactacg gagccggcgc ccgaaccacg acccgggccg actggtatat
     2401 cgttggcctt ggcccatttg atgaaatcgg caacgatcag gaaatagcct gaaaatccca
     2461 tcccggtgat gatgtcgagc tcatattcga gacggtcgga gtaacgttgc aggtcttcgt
     2521 ccgagcggcc gcagatgcgc ttgccaaggc ccgctcgcgc atcacgtctg agctgctcat
     2581 cctcatcggc gctcagccgc ggcaggatcg gctttcgctt gggcgcggca accgcgcagc
     2641 gctgagcaat gacaagagtg ttggcgagcg cttccggcaa atcggagaac aattggctca
     2701 tcatcgccgg gtcttttaac caggcgtcac gcgacgattt gggtcgatcc tgactttcca
     2761 catagaccga gttcgcgatg cacagcattg cgtcatgcgc tgcatgaaac gagggatccg
     2821 gataagccgc ggggtttgtc gcgactaacg gaagatcacg ggcataagcg aggtcgatca
     2881 gccggctttc agccgcctcc tcgacaggat cattctgtcg cgagagctcg atgtagagac
     2941 gatcggcaaa aattgcctga agctggtcaa ggtatgcttc ggccttgagt tcctggccat
     3001 cggcaagcag acgcgcaact gcgccttcgt ttcctgcagt aagcgcgatg aggcctgcgc
     3061 taagttcttc cacctgtgaa agcgcaacat gtggctcttg ttcgagcggc cgttctaaat
     3121 gcgctgagga aacaagcttg cagaggttcg agtaaccctg ttcatccttt gcaagaagag
     3181 caagccagtc aattgcagcg ccggcgccga gctccgccgg acgcgctatt gcgagaagtg
     3241 acccgatgat tggctgcacg cccttgccga agcatgcctc actgaaaggc attgagccat
     3301 aaaggccatt ccgatcggta agtgcgacgg ccgggaaacc cagctttgcg gccttttcgg
     3361 caacggtctt gggctccatc gcaccttcga gcatcgtgaa ggatgaaaag acccgaagtg
     3421 gaacgaatgg ctggctcacg gatcggttat ggctctcttc gcctcaggcg gacaagcgaa
     3481 gccgagcgaa ttatccacca ttattggggc ggttgccacc gatcatccat gatgtcgcgg
     3541 atctcgcgca ttctaccggc ataggcatcg gcgacgcacg cacttgtgct gcatcgatcg
     3601 cgataggcgt aaaaacgttg cgccgttgct ctcagtacct cccgctcgtc cggcgaggcg
     3661 tccgcgaatg ctctcgaata ttgcgcagcc atttggcgat cgagcgcagc caggcccgga
     3721 tcattgcaaa ccgccatttc gccccgcgtc cgtgccgttg aacagtcgaa gctcggtcgt
     3781 acgttccgcg acggaggagc cggcatcggc ggcgcagcaa ctggtgctga tttctggact
     3841 ggcgctgatt gctctgccgg cggaggcgtt gaatcggccg ggccggtggt cgaggcggtg
     3901 tccgcatccg gcggctgctg gggcgcgccc cgattgactt gtgcgagtgt cgccaatggc
     3961 gtcacgatgg catcggcgtt cttgagcagg acgacggggc cacttccatc ggcagccatt
     4021 gcaaccgtgt agtcgacgtc actttgaagc gtactgcgac cacccacaac ggcgaggccg
     4081 gggggcagat caaatgaaac ggttcccgag cagtttacgc cgccagtgga ggtatccacg
     4141 ttttccatca ccggatggtc catccggacc acggcaaccg aagacaatcg gtcgaatgct
     4201 gcctgatcgc tgccacgaag ctgcgctgca cggcgaaaaa gctcgcgctt tattaagtca
     4261 taggtggcgt tgctcgcgca cagcttttca ggattggccg aggctcgatt gctcgtgacg
     4321 actgtcttgt tcgtgagctt gtcctcatct gaactccctc gcgttgcaaa ataagcaacg
     4381 ataagcacaa ggagcgcgag agcgccgagc aagatgatcg ttgaccaatt cgtgcggcct
     4441 gaagacggag aggcattatc gtgcggcgga tccttcattc gagtcggccg tcgtgaaggc
     4501 gcaccaccct gtccatgcgc gcagcgagac gttcgttgtg ggtcgcaacg agcgctgcgc
     4561 ttccttcatt tcgcgtcagc gcaagaaact ctgacaagac cgtgtcggcg gtcttttcgt
     4621 cgaggttgcc ggtgggctcg tcggc
//
LOCUS       DASRBJ010000238         2427 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_592150,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000238 DASRBJ010000000
VERSION     DASRBJ010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2427
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_592150"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1147
                     /locus_tag="VE968_06660"
     CDS             <1..1147
                     /locus_tag="VE968_06660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HZU51539.1"
                     /translation="DPQRHGCRSETVVAVNFSKKLILIGGTSYAGEMKKSVFGLLNFI
                     LPPAGIMPMHCSANIGPNGDTAIFFGLSGTGKTTLSADPNRTLIGDDEHGWSDTAVFN
                     FEGGCYAKMIRLSAESEPEIYATTKRFGTVLENVVIDPVTRELDLDDATLAENSRGAY
                     PIDFIPNSSADNLGPVPTNVVMLTADAFGVLPPIAKLTPDQAMYHFLSGYTAKVAGTE
                     IGVTEPQATFSTCFGAPFMPRHPSVYGNLLKERIAKGEVDCWLVNTGWTGGKYGVGKR
                     MPIKETRALLNAALDGSLKNVEFRKDPNFGFEVPVSVPGVDTSILDPRSTWKNPADYD
                     AMAAKLVDLFVENFAQFAEQVDEGVRQAAPKISQQSVQPTQSAATAA"
     gene            1189..1635
                     /locus_tag="VE968_06665"
     CDS             1189..1635
                     /locus_tag="VE968_06665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51540.1"
                     /translation="MTEYLPRLFNTDADVVHVGEGLLSRTLPRAEWTHEAHLAATTYL
                     LLRHPEIDLDEKLPSIIRRYNESVGGVNSDTEGYHDTITRVFLAGIRLFVKEADVSKP
                     LHELVNQLLLSPMGRREWPLRFYSPAKLLSVEARKNLVDPDIAALP"
     gene            1664..>2427
                     /locus_tag="VE968_06670"
     CDS             1664..>2427
                     /locus_tag="VE968_06670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014074722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HZU51541.1"
                     /translation="MKSLRVALAAAFLIAAAPPFEPPHSGARTVYRHASLIDGTGRGL
                     QGDMAVLTDGERIIAVVPDTALTAAQLRGATQVDLAGKFLLPGLIDSHQHLATPPNRS
                     EAERRLRRDIYSGITATRDMADDLRQIADLTRAARVGEIPSPDIDYAALMAGPSFFVD
                     PRTQAIAEGAVAGKVPWEQAIDDRTDLQLAVARAKGTYATAVKIYANLPGTLVAAITR
                     EAHRQGMRVWAHAMVFPATPVEVIDAGVDSASHACY"
BASE COUNT          509 a          772 c          683 g          463 t
ORIGIN      
        1 cgatcctcag cgccacggat gccggagcga aaccgtcgtt gccgtcaact tctcgaagaa
       61 attgatcctg attggcggca cctcttacgc tggcgagatg aagaaatcgg tcttcggact
      121 tctgaacttc atccttcccc cggcgggaat catgccgatg cactgttcgg caaacatcgg
      181 ccccaacggc gacactgcaa tcttcttcgg gcttagcggt accgggaaga ccacgctttc
      241 ggccgacccc aaccgcacgc tcatcggcga cgacgaacat ggctggtcgg acacggcggt
      301 cttcaacttc gaaggcggtt gttatgccaa gatgatccgg ctgtcggcgg agtcggagcc
      361 cgagatttac gcaaccacca aacgcttcgg aacggttctt gaaaatgttg tcattgatcc
      421 ggtgacgcgt gaacttgatc tcgatgatgc gaccctcgcc gagaacagcc gcggcgcgta
      481 cccgatcgat ttcattccga actcttcagc cgacaacctc ggcccggtcc cgacgaatgt
      541 cgtcatgctc accgccgatg cattcggcgt tcttccgcca atcgcaaagc tgacgcccga
      601 ccaggcaatg taccattttc tttccggcta cacggcgaag gtcgccggaa ccgagatcgg
      661 ggtcaccgag ccgcaggcaa cattctcgac ctgcttcggc gcacctttca tgccgcgcca
      721 tccctcggtt tacggcaatc tgctcaagga gcgaattgcc aagggcgagg tagactgctg
      781 gctcgtcaac accggctgga caggcggcaa atatggcgtc ggcaagcgca tgccgatcaa
      841 ggagacgcgc gcgctcctca acgccgcact cgacggcagc ctcaagaatg tcgaattccg
      901 caaagatccg aatttcgggt tcgaggtgcc ggtttccgtc cctggtgtcg acacgtcgat
      961 cctcgatcca agaagcacct ggaaaaatcc ggcggactat gacgcgatgg ctgcaaagct
     1021 cgtcgacctt ttcgtcgaga acttcgccca atttgcggag caagtagacg agggggtccg
     1081 acaagcggca cccaagatct cgcaacaatc cgttcaaccg acgcaaagcg cggcgacagc
     1141 cgcataacag gacccggctt cgatcgggtc tatccaagga cctgatcgat gaccgaatac
     1201 ctcccacgcc ttttcaacac cgacgccgat gtcgttcacg tcggcgaagg attgttgtcg
     1261 cgcactttgc cgcgcgccga atggacgcac gaggcgcatc ttgcagcaac tacctatttg
     1321 cttctgcggc acccggaaat tgatctcgac gagaagctgc cgtcgatcat ccggcgctat
     1381 aacgagagtg tcggtggtgt gaacagcgac actgaaggct atcacgacac gatcacgcgc
     1441 gtcttcctcg cgggcatccg cctgttcgtg aaagaggccg atgtttcaaa gccgctgcac
     1501 gaactcgtca atcagttgct gctgtcgccg atgggaaggc gcgagtggcc tctgcgtttt
     1561 tatagtccag cgaagttgct gtcggtcgag gctcgaaaaa atcttgtcga tccggacatc
     1621 gcagcccttc catgaacatc cgacgggagg caggatcctc gagatgaaaa gtctccgcgt
     1681 tgctcttgcc gcagcattcc tgatcgccgc ggccccgccg ttcgaaccac cgcacagtgg
     1741 cgcccgaaca gtctaccgcc atgcatcctt gatcgatgga actgggcgcg gcctccaagg
     1801 ggatatggcc gtgcttaccg acggcgaacg catcattgcc gtcgttccgg acaccgctct
     1861 aacggccgcg cagttgcgcg gcgcaaccca agtcgacctt gctggaaagt ttcttctgcc
     1921 cggtctcatc gactcccatc agcaccttgc tactcccccg aaccggagtg aagcggagcg
     1981 tcggcttcgc cgcgacatct acagcgggat cacggccacg cgcgatatgg ccgacgatct
     2041 ccggcaaatc gccgacctca cgagagcggc ccgggtcggc gaaataccgt caccagatat
     2101 cgactacgcc gcgctcatgg ctggaccgag cttcttcgtc gatccacgca cacaggcaat
     2161 cgcggagggg gcggtcgccg ggaaggtgcc gtgggagcaa gcgattgacg accgcaccga
     2221 cctccagctt gcggtcgccc gagcaaaggg cacctacgca acggccgtaa aaatctatgc
     2281 caatctcccc ggtacgctcg tcgcagcaat cacgcgcgaa gcccaccgtc agggaatgcg
     2341 cgtctgggca catgcgatgg tttttccagc gacgcccgtt gaagtcatag acgcgggtgt
     2401 cgatagcgcg tcgcatgctt gctattt
//
LOCUS       DASRBJ010000239         3516 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_231851,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000239 DASRBJ010000000
VERSION     DASRBJ010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3516
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231851"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..950)
                     /gene="csx17"
                     /locus_tag="VE968_06675"
     CDS             complement(<1..950)
                     /gene="csx17"
                     /locus_tag="VE968_06675"
                     /inference="COORDINATES: protein motif:HMM:TIGR04113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-U CRISPR-associated protein Csx17"
                     /protein_id="HZU51542.1"
                     /translation="MAEIVLAGCAPIPLASYLKALGVFRLVAEQKDKKARGCWRDETF
                     VLDTALTEQELVHFFLHEYRPSPIISPWNGGSGFFPNDNKLGISPIVEAKAERFAAYK
                     EAIEVARSILEQNNIVEKPEGAQKDAIRAQVRTRLPDGALLWYDAAVLLTQTKFLTPP
                     LLGSGGNDGRTDFSNNFMCRLTDLFEAESGKPSEIAKRSLEAALYATLSTSLIRESTT
                     SIDGSRREKLLAIGQFGPGASGGANATVGFERETLINPWDYVFLIEGTLLFAASAARR
                     LQSSSSAGLSYPFTVNSTSTDGAGASLTDEKRKSKGKFVG"
     gene            complement(943..3402)
                     /gene="cas3"
                     /locus_tag="VE968_06680"
     CDS             complement(943..3402)
                     /gene="cas3"
                     /locus_tag="VE968_06680"
                     /inference="COORDINATES: protein motif:HMM:TIGR01587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0043571 - maintenance of CRISPR repeat
                     elements [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated helicase Cas3'"
                     /protein_id="HZU51543.1"
                     /translation="MNFSDFFSLATQKRPYEYQRLLAEAGWPDVLIAPTGLGKTAAVI
                     VAWLWQRWLVSNATPRRLVYCVPMRTLVEQTAVNVCCWLANLRGSELDPNGSLPDKTH
                     ILMGGEVDDEWIRYPERPAILIGTQDILLSRALMRGYGVGRARWPVDFALLHNDAMWV
                     FDEVQLMAAGAPTSAQLEAFRREISSWAGCRSLWMSATLERDWLKTVDFEKHAAKLVV
                     QKLTEADRAHPAVQQRFAAPKPLAKAKTIIGWAATSGRGLIEYADALADEVTGAHRPG
                     KTTLVILNRVGRAQALYDALKKRNSPPLLLVHSRFRPAEREKINKQLAEKPDASGRIV
                     VATQAVEAGVDITSAVMFTELAPWASLVQRFGRLNRGGEEKKIEGSETELGGQAFWID
                     IATDDGKTDNLALPYTPQELTAARERLEKLEDVSLKSLEGFAHGFQGSWQVLRRKDLY
                     QLFDTDPDLTGFDVDVSPYVRGADDTDVRVFWRAIADLKAGPQGAEARRPHRDEICAV
                     PIGQARAWLGKHSGRAFVWDWLEKRWTKLDRPWPGALVLVDAAVGGYNAERGFDVNAT
                     SAVDPVVRQDGPKTEPDSADGDSDTVKDREVWLPDHLRHVRDEARWLCEALEVQGVEA
                     EAVVTAAQWHDLGKAHEVFKARCGLAPDAAPLAKTPDYNWRMKCPPNRRYFRHELASA
                     LAWLQRGPQSQSHDLVAYLIAAHHGKVRMGLRALPDERGPNDAKNPDKRFARGVWDGD
                     RLPALSVDELCLPDTDITLDVMELGGGATGRSWATRTLELLERYGPFRLAFLEALVRI
                     ADWRASGSEQANACRSGGGDG"
BASE COUNT          664 a         1130 c         1012 g          710 t
ORIGIN      
        1 ttgccgacga acttgccttt gctctttctt ttttcgtcgg tcagcgaggc gcctgcgcca
       61 tcggtgctgg tcgaattcac cgtaaacgga tagctaagac ctgcggagct tgaactttga
      121 agtcgacgag ctgcactcgc agcaaagagc aatgttccct ctatcagaaa aacatagtcc
      181 cacggattga tgagcgtctc ccgctcgaac ccgactgtcg cgttcgctcc gccgctcgca
      241 ccggggccaa attgccctat ggccagcaat ttctctctcc gcgacccatc gattgaggtc
      301 gtagactctc gtatcaagga agtgcttagc gttgcgtata acgccgcttc caatgatcgc
      361 ttggcaatct cgcttggctt accgctctcc gcctcgaata agtctgtcag ccgacacatg
      421 aaattgttcg agaaatcggt gcggccatcg ttgcccccag aaccgagcag tggaggcgtt
      481 agaaatttgg tctgagtaag caggacagca gcgtcgtacc aaagtagcgc gccatccggc
      541 agtctcgtgc gtacctgcgc tcgtattgcg tccttctgtg cgccttcagg cttctcgacg
      601 atattgtttt gctcgagaat gctccgcgca acctctatcg cctccttata agcagcgaat
      661 cgctcggcct tggcttcgac tatcgggcta attccaagtt tgttgtcgtt gggaaagaac
      721 ccgctgccgc cgttccacgg cgagatgatc ggcgaagggc ggtattcgtg cagaaaaaaa
      781 tgtacgagct cttgttccgt cagcgccgta tcgagcacga aagtctcgtc gcgccagcag
      841 ccgcgcgcct tcttgtcctt ctgttccgcg acgagccgga agacgccgag cgccttgagg
      901 taggaagcga gcgggatcgg cgcgcagccg gcaaggacga tttcagccat cgccacctcc
      961 cgaacggcag gcgttcgctt gctctgaccc cgaagcccgc cagtccgcga tgcgcacgag
     1021 cgcttcgaga aaggcgagcc ggaacgggcc gtagcgctcc agaagctcca gcgtgcgtgt
     1081 cgcccagctt cgcccggtcg cgccaccacc gagttccatg acgtcgagcg tgatgtccgt
     1141 atctggaaga cagagctcgt ccaccgacaa cgccggtaga cggtcgccgt cccagacgcc
     1201 gcgcgcgaaa cgcttgtcgg ggttcttggc atcgttcggt ccgcgttcat cgggcaaggc
     1261 gcgcagcccc atgcgcacct tgccgtgatg agcagcgatc agataggcga cgagatcgtg
     1321 cgactgcgat tgcggcccgc gctgcagcca cgccagcgcc gaagcaagct cgtggcggaa
     1381 gtagcggcgg ttcggcggac acttcatgcg ccagttgtag tcgggcgtct tggccagcgg
     1441 cgcggcatct ggtgcgaggc cgcagcgcgc cttgaacacc tcgtgcgctt tgccgagatc
     1501 gtgccactga gccgccgtga caacggcctc cgcttccacg ccttgtacct cgagcgcctc
     1561 gcacagccac ctggcctcat cgcgcacgtg gcgcagatgg tctggcagcc agacctctcg
     1621 atctttcacc gtatcggaat caccgtccgc gctgtcgggc tccgtcttcg gtccatcctg
     1681 ccggacaacg ggatcgaccg cgctcgtcgc gttgacgtca aatccacgct ccgcgttata
     1741 gccgccgacg gcagcatcta cgaggacgag cgctcccggc caaggcctat caagcttcgt
     1801 ccagcgcttc tccaaccaat cccagacgaa agctctgccg ctatgcttgc ccagccatgc
     1861 tctcgcctgc ccgatcggca ccgcacaaat ctcgtcgcga tgcggtcgcc ttgcttcagc
     1921 cccttgtggg cccgccttga gatcggcgat ggcacgccag aacacgcgca cgtctgtatc
     1981 gtcggcgccg cgcacatagg gcgagacatc gacatcaaaa cccgtcaagt ccggatcggt
     2041 gtcaaagagt tggtagaggt ccttgcggcg aagaacctgc cacgatcctt ggaagccatg
     2101 cgcaaatcct tcaagcgact tcagcgagac gtcttcgagc ttttcaagac gctcgcgcgc
     2161 cgcggtgagt tcttgcggcg tatacggcag ggccagattg tccgtcttcc cgtcatccgt
     2221 agcgatatca atccagaagg cctgcccgcc aagctccgtc tcactgccct ctatcttttt
     2281 ctcctcgccg ccgcgattga gccggccgaa acgctgcacc aatgatgccc aaggtgcgag
     2341 ctcggtgaac atgacggcgg aggtgatgtc aacgcccgcc tcgaccgcct gcgtcgccac
     2401 gacgatgcgg ccgcttgcat cgggcttctc ggcgagctgc ttgttgatct tttcgcgctc
     2461 ggccggccgg aagcgactat gcacgagtag aagtggcgga gaattccgtt ttttcagtgc
     2521 atcataaagc gcctgcgcgc gtcccacgcg gttcaagatg acgagcgtcg tctttcctgg
     2581 tctatgcgcc cccgtgacct catcggcaag tgcgtcggcg tattcgatca agccccttcc
     2641 cgaggttgcc gcccaaccga tgatcgtctt tgcctttgcg agaggctttg gggcggcaaa
     2701 ccgctgctgg acagcgggat gcgctcggtc ggcttcagta agtttttgta caacaagctt
     2761 ggccgcatgc ttctcgaagt cgaccgtctt cagccaatcc cgctccagag tcgccgacat
     2821 ccacagcgag cggcagccgg cccaggagct gatctctcgc cggaaagctt cgagctgcgc
     2881 ggacgtgggt gcgccggccg ccatgagctg gacctcgtcg aacacccaca tcgcatcgtt
     2941 gtgcaggagg gcgaagtcga cgggccaacg ggcgcgccca accccatagc cgcgcatcag
     3001 cgcacgcgag aggaggatgt cctgtgtgcc aatcagaatg gcgggtctct cagggtatcg
     3061 aatccattcg tcatcgactt cgcctcccat caggatgtgt gtcttgtcgg gcaaggagcc
     3121 atttggatcg agctccgacc ctctgagatt tgcgagccag cagcaaacat tcaccgccgt
     3181 ctgctccaca agcgtccgca tcggcacgca gtaaacgagc cgacgtggtg tcgcattaga
     3241 aacaagccaa cgctgccaaa gccaagcgac gatcactgct gctgtcttgc cgagtcccgt
     3301 cggagcgata agcacgtccg gccaaccggc ctccgcgagc aagcgctggt attcataggg
     3361 tcgcttttgc gtcgccagag aaaagaagtc gctgaagttc atagacgcga ggctccctaa
     3421 ctctcaatgt gatcctcaat gggaccggcg actaggcttt gcaaaacctc acctcggatt
     3481 ggcgagcgtg taattcgtgc tctattgtgg ggcgac
//
LOCUS       DASRBJ010000240         3960 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_738829,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000240 DASRBJ010000000
VERSION     DASRBJ010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3960
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_738829"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..261
                     /locus_tag="VE968_06685"
     CDS             <1..261
                     /locus_tag="VE968_06685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly protein CpaB"
                     /protein_id="HZU51544.1"
                     /translation="EKQMLLAMANRPIDTNTTFTTGGDVSRFQRRTVPARPADKAEVL
                     AKAMGSFGKGLGQAVTGQASDTGPVVRIARGNNVTVVPVGAR"
     gene            263..1714
                     /locus_tag="VE968_06690"
     CDS             263..1714
                     /locus_tag="VE968_06690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II and III secretion system protein family
                     protein"
                     /protein_id="HZU51545.1"
                     /translation="MNNVAIIRRARLGTALAAAALALGTLGASAPAVAQPTSARPAET
                     VNLSKGTGTLVRLSEPMSDVFVANDAVADVQVRSSTQLYVFGKGQGETTIYATSKGGR
                     VVYAANVRVGNNISSVGEMLHLAMPDASIQATPMNNLVLLTGTVANPDDVAEAQRLTQ
                     AYVGDGTQVISRVKSATPLQVMLKVRIAEINRSLLKSMGVNLLSHDTTSGFQFGIGRG
                     TPGTISGNTATFNVNPTGTTLAGFGHLLGLDILGTLDIAATDGLATTLAEPTLTALSG
                     ETASFLAGGEFPIPISQASGTSSAVTIEYKQYGVGLAFTPIVLGDGRISMRVRPEVSQ
                     LDPSSGVSLGGYSVPGLITRRAETTVELGSGQSFMIAGLLQNTGSNSVDKTPVLGDLP
                     ILGALFRSTQFQRKETELVVVVTPYLVRPVSGQLATPLDGYRSPNDIQRDWGGQTFTG
                     VSGHLDPTAVVAPAGPAPAPAMSGGSAAPGFKM"
     gene            1744..2379
                     /locus_tag="VE968_06695"
     CDS             1744..2379
                     /locus_tag="VE968_06695"
                     /inference="COORDINATES: protein motif:HMM:NF021025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaD family pilus assembly protein"
                     /protein_id="HZU51546.1"
                     /translation="MRSTFLLIAIGSSLAACQTAHQPDKPAMGLAAVNVPIVTSADYV
                     FDAAAPGGSLAPGESDRLNGWFQGLGLGYGDHVYVDGGYAPSARAQVAAIAGRYGMLV
                     SAGAPVTAGTVQPGSVRVIVARRRAVVPGCPNWSQPSQPDWDNKTMSNYGCAVNSNLA
                     AMVADPEDLVHGREGASVTDTRDAIRAVDLYRTKTPTGQGALQAVSSKGGN"
     gene            2379..3644
                     /locus_tag="VE968_06700"
     CDS             2379..3644
                     /locus_tag="VE968_06700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein CpaE"
                     /protein_id="HZU51547.1"
                     /translation="MNAPFQARAGLRDPFTAFVCDDATADMLRPVAVEHGWSPEKVNK
                     GGLRNAVQSLSVSASPNILFVDLSESADPLNDINALAEVCEPGTIVIAAGTVNDVRLY
                     RDLVASGIHDYLLKPFTVDQLRDTFAHAQMILSGPRGEAQADKPHVMAAVIGVRGGVG
                     ASTIATSLAWLFGEKARRSTALLDLDVHFGTGALALDLEPGRGLTDAIENPSRIDGLF
                     IERAMVRANERLSVLSAEAPIHQPLVTDGTAFFQLQEEMRNAFESTVLDLPRHMLIQY
                     PHLVHDAHVAIVVAELTLAGTRDTIRVLAWLKSNAPQTKVVVVANSVPSGGALEISRK
                     DFEQSIERSVDVVFPYDAKVAAQAAKLGKPMAEVASGKLASPFNTLSGMVLNHASEEG
                     TPSEAPAAASKSLVNNLKSMLAKPKDKAA"
     gene            3713..>3960
                     /locus_tag="VE968_06705"
     CDS             3713..>3960
                     /locus_tag="VE968_06705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein TadB"
                     /protein_id="HZU51548.1"
                     /translation="MFLWLLIIGGIGAIALAFMAVRGPSASKNLKRRMELIKERHGDV
                     ITGNAQAQIRKLFAERASRFEGYASTLIPKPALLRQRL"
BASE COUNT          765 a         1280 c         1184 g          731 t
ORIGIN      
        1 gaaaagcaga tgctgcttgc gatggctaac cgtccgatcg acaccaacac cacgtttacg
       61 acgggcggcg atgtgtcacg cttccagcgc cgaacagtcc ctgctcggcc ggccgacaag
      121 gcagaagtcc tcgcaaaggc gatgggtagc ttcggcaagg gcctcggcca ggctgtaacc
      181 ggccaagcga gcgacaccgg acccgtcgtc cgcatcgcac gcggcaataa tgtcaccgtt
      241 gttccggtgg gagctcgcta agatgaacaa tgtagcaatc attcgccggg cacgcctcgg
      301 cacggcgctc gcagctgctg cgctcgctct gggaacgctt ggagcttcgg ctccggccgt
      361 agcccagccg acgtcggccc gtccggccga aacggtaaac ctcagcaagg gtaccgggac
      421 tctcgttcgt ctctccgagc cgatgagcga tgtgttcgtc gctaatgacg ccgttgctga
      481 cgtacaggtc cgctcgtcca cccagctcta tgtcttcggc aaaggccaag gcgagacgac
      541 gatctacgcg acctcaaagg gtggccgggt tgtctacgcg gcgaacgtcc gcgtcggcaa
      601 caacatcagc tcagtcggcg agatgcttca tctcgcgatg ccggacgcaa gcatccaggc
      661 tacgccgatg aacaatctcg tactgctgac cggaaccgtc gccaaccccg acgatgtcgc
      721 ggaggcgcag cgcctgacgc aagcctatgt cggtgacgga acgcaggtca tcagccgcgt
      781 caagtccgca acgccgctcc aggtgatgct gaaagtgagg attgctgaaa tcaaccgttc
      841 gcttttgaag tccatgggcg tcaacctcct gtcccatgat acgacttcgg gcttccagtt
      901 cgggattgga cggggaactc ccggaacgat ttcgggaaac accgccacgt tcaacgtgaa
      961 cccgacgggg acgaccctgg ctggttttgg gcatctgctt gggcttgata tcctcggcac
     1021 gctcgacatc gcagcgacgg acggccttgc aacgacgctt gctgaaccga cgctcaccgc
     1081 actttcaggc gaaacagcga gcttccttgc cggtggcgaa ttcccgatcc cgatctcgca
     1141 ggcgagcggg acgagttcgg cagtcaccat cgagtacaag caatatggcg tcggcctcgc
     1201 tttcaccccg atcgtccttg gcgacggccg catttcgatg cgcgtccgcc cggaagttag
     1261 ccagctcgat ccatcgagcg gcgtctcgct cggcggctac tcggtaccag gccttatcac
     1321 ccgacgcgcc gaaacaaccg tcgagctcgg atccggtcag tcgttcatga ttgccggcct
     1381 gctccagaac acgggcagca acagtgtcga caagaccccg gttctcggcg atctgccgat
     1441 cctcggcgcg ctgttccgct cgacacaatt ccagcgcaag gaaaccgagc tcgtcgtggt
     1501 cgtcacgcct tatctcgtgc ggccagtgtc gggtcagctt gcgacgccac tcgatggcta
     1561 tcgcagcccc aacgacatcc agcgcgactg gggcggccag acgttcacgg gcgtgagcgg
     1621 ccatctcgat ccgaccgcag tcgttgctcc ggcgggacca gcacccgctc cagcgatgag
     1681 cggcggttcg gcggcccctg ggttcaagat gtgatgcgcg gcatgttcag gaaggattcg
     1741 aagatgcgct cgacgtttct gcttatcgca atcggctctt cgctggcagc ctgccagacc
     1801 gcacaccagc ccgacaagcc cgccatgggt cttgcagcgg tcaatgtccc gatcgtgaca
     1861 agtgccgact atgtgttcga tgccgccgct ccgggcggat cactcgcccc gggcgaaagt
     1921 gaccgcctca atggttggtt ccaaggactt gggctcggct atggcgatca tgtctatgtc
     1981 gatggcggct atgcaccgtc cgctcgagcc caggttgcgg caattgccgg ccgttacggg
     2041 atgctcgttt ccgccggtgc tcccgtcacc gcgggaaccg tgcagccagg ctccgttcga
     2101 gtaatcgtcg caaggcggcg cgctgtcgtc cctggctgtc cgaattggag ccagccgtca
     2161 cagcccgact gggacaacaa gaccatgtcg aactacggtt gcgctgtaaa ttcaaacctc
     2221 gccgcgatgg tcgccgatcc cgaggatctc gtccacggac gagagggcgc ctcagtcacc
     2281 gacacgaggg atgcaatccg cgcggttgat ctttatcgca cgaagacacc gaccggccag
     2341 ggcgcgctgc aggctgtcag ctccaaggga ggcaactaat gaacgctccg ttccaggctc
     2401 gcgccgggtt gcgcgatccg ttcacagcct tcgtttgcga cgatgcaacg gccgacatgc
     2461 ttcggcccgt cgcggtcgaa cacggctggt ctccggaaaa agtgaacaag ggcggcttgc
     2521 gcaatgccgt gcagtcgctg tcggtttcgg caagcccgaa catcttgttt gtcgacctca
     2581 gcgaatccgc cgatccgctc aatgacatca acgcccttgc agaagtctgc gagcccggaa
     2641 cgatcgtcat tgcagcgggc acggtcaacg atgttcggct ctatcgcgac ctcgtcgcga
     2701 gcggcattca cgactacctt ctgaagccct tcaccgttga ccagcttcgt gacaccttcg
     2761 cacacgccca gatgatcctt tctggtccac ggggcgaagc gcaggcagac aagccgcacg
     2821 tcatggcggc cgtgatcggc gttcgcggcg gcgtcggcgc ctcgacaatc gcgacctcgc
     2881 ttgcctggct cttcggcgaa aaggcccgtc gctcgacggc gcttctcgac ctcgacgtcc
     2941 attttgggac cggcgctctc gcgcttgacc tcgagccggg acgcggcctt acggacgcga
     3001 tcgaaaatcc tagccgcatc gatggcttgt tcatcgagcg cgcaatggtg cgtgccaacg
     3061 aacgtctgtc ggtgctttcg gccgaagcgc cgatccacca gccactcgtt acggacggaa
     3121 cggcattctt ccagctgcag gaggaaatgc ggaacgcttt tgagtcgacc gtactcgacc
     3181 tgccgcggca catgctgatc cagtatccac acctcgtcca tgatgcgcat gtcgccatcg
     3241 ttgtcgccga gctgacactg gccggaacga gggataccat tcgcgttctt gcgtggctca
     3301 agtccaacgc cccgcaaacc aaggtggtcg tcgttgcgaa cagcgtcccc tcggggggcg
     3361 cgctggaaat cagccgcaag gacttcgagc aatcaattga acgctcggtc gacgtcgtct
     3421 tcccgtatga cgcgaaagtt gcggcccagg ctgcaaaact cggcaaaccc atggccgagg
     3481 ttgcaagcgg aaagcttgct tcaccgttca acacgctctc cggcatggtc ttgaaccacg
     3541 caagcgagga aggaactcct tcggaggcgc cggccgcagc aagcaaatcg ctggtaaaca
     3601 atctcaagtc gatgctggcg aagccgaaag acaaggctgc gtaagcagcg tgccgcacgt
     3661 gctttcccca agggggtggc cggcgcaaca gagtgagagg cagtaggcaa gtatgttctt
     3721 gtggctactc attatcggcg gcatcggggc aatcgctctt gccttcatgg cagtgcgcgg
     3781 cccgtcagcg tccaagaacc tcaagcgtcg catggagctc atcaaggagc gtcacggcga
     3841 tgtgataacc ggcaatgcgc aagcgcagat ccgcaaactg ttcgccgagc gcgcaagccg
     3901 gttcgaaggt tatgcttcga ccctgatccc caagcccgca ctcctgcgcc agcggctcga
//
LOCUS       DASRBJ010000241         7197 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_128945,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000241 DASRBJ010000000
VERSION     DASRBJ010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7197
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128945"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            150..1193
                     /gene="pstS"
                     /locus_tag="VE968_06710"
     CDS             150..1193
                     /gene="pstS"
                     /locus_tag="VE968_06710"
                     /inference="COORDINATES: protein motif:HMM:NF008171.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HZU51549.1"
                     /translation="MKQLFAVLPLTVALVACGSNAGSQGGNAAGPSGAQVTGAGSTFV
                     YPVLSAWAADYRKESGASINYQSIGSGAGISQAKAGTVDFGATDQPLGSDELGQAHLA
                     QFPIVIGGIVAVVNIPGLNAGQLKLTGPVLADIFAGKVKSWNDPVVTKLNPGLKLPAA
                     TIAVVHRSDGSGTTFNFTHYLSQVSPSWKSGPGEGKTVNWPSGVGGKGNEGVAGYVKQ
                     IPNSIGYVEYAYVIQNKMTYAQLQNAAGNFVTPSAATFSNAAESADWKNAKDFNLVMT
                     NAPGADAYPITATTFILMPTQPRDRTKSDAAIAFFKYALEKGQAQANKLDYVPLPAGL
                     VQQIETYIGATIK"
     gene            1190..1990
                     /gene="pstC"
                     /locus_tag="VE968_06715"
     CDS             1190..1990
                     /gene="pstC"
                     /locus_tag="VE968_06715"
                     /inference="COORDINATES: protein motif:HMM:TIGR02138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HZU51550.1"
                     /translation="MNASLAREQNAAAAPIRSGAAADRLFQLITAAAAWLVLLLLGAA
                     ALSMAWGGRLAFKTFGSRFITSSDWDAVGGHFGALVPIYGTLVTSAIALIIAVPVSIG
                     IALFLTDIAPRWTRAPIAMAIELLAAIPSIIYGMWGLFVFAPFMAAHVEPWLSDSLGN
                     VAIVGPLFSGPPIGIGMLTAGIVLGIMVIPFIASVAREVFNAVPAPLRESAVALGATR
                     WEILSRVTLPYTRSAIIGAVFLGLGRALGETMAVTSSSGTRTISRSHS"
     gene            1990..2169
                     /locus_tag="VE968_06720"
     CDS             1990..2169
                     /locus_tag="VE968_06720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51551.1"
                     /translation="MPSNSIAAAIANEFTEADTDLYRSSLIGLAFLLFVVTLIVLGIA
                     KLLLLRMNRQFGRTH"
     gene            2171..3010
                     /gene="pstA"
                     /locus_tag="VE968_06725"
     CDS             2171..3010
                     /gene="pstA"
                     /locus_tag="VE968_06725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HZU51552.1"
                     /translation="MAIPVRRRAADIAAFLFASAATAFGLLWLFWILWTTLRQGAAAL
                     TPELFTQMTPPPGTTGGLLNAFYGSAIMVLLAVVIGAPLGVAAGTYLAEHGRHSRLAT
                     VVSFLNDVLLSAPSIVIGLFVYELLVVTAGHFSGYAGALALAMILLPIVVRTTEESLR
                     LVPDQMREAGFALGLPRWRVTSQIIYKAALSAILTGILLGIARIAGETAPLLFTALNN
                     QFWSANLNGPLANLPVVIFQYAMSPYDEWHTLAWAGAFVLTAFVLILNLLVRFLARKG
                     THR"
     gene            3085..3822
                     /gene="pstB"
                     /locus_tag="VE968_06730"
     CDS             3085..3822
                     /gene="pstB"
                     /locus_tag="VE968_06730"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HZU51553.1"
                     /translation="MRNLNFHYGKVHALKDVTMTVPANAVTAIIGPSGCGKSTLLRTI
                     NRIYELYPEQQATGEIIIDDRNVLDRRYPLADLRRLVGMVFQKPTPFPSSIRANVAFA
                     LSYYERLSKSELNDRVEDALRQAALWDEVKDKLNHSALSLSGGQQQRLCIARAIAVKP
                     EILLLDEATSALDPISTAKIEELIHELSERFTIMIVTHNMQQAARVSRRTAFFHLGEL
                     IEFGKTSDIFTNPREQRTKDYITGRFG"
     gene            3834..4523
                     /gene="phoU"
                     /locus_tag="VE968_06735"
     CDS             3834..4523
                     /gene="phoU"
                     /locus_tag="VE968_06735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010164455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HZU51554.1"
                     /translation="MQQTREHTLKAFDQDLERLRALISQMGGLAEHAIGEAMRCLVER
                     DLDGAEGVIKDDKKLDALEVETERRAVQLIALRAPMAEDLRDVVAALKISGVVERIGD
                     YAKNIAKRVPLLENAGKIEPLSLLPEMARIATGMVHDVLDAFIERDAEAAYRVCQRDD
                     AVDDFYDSIFRALLTHMMENPQSIGQATHLLFVAKNLERVGDHATNIAEMVYYAATGQ
                     HMTDRPGKSPK"
     gene            4520..5218
                     /gene="phoB"
                     /locus_tag="VE968_06740"
     CDS             4520..5218
                     /gene="phoB"
                     /locus_tag="VE968_06740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HZU51555.1"
                     /translation="MRSTTTKRLLVVEDDRPIAELLKFHFTGAGFTVTTTPSGDEALI
                     LIEEIRPDLVILDWMIEGTSGIEVCRRVRRSNATATLPIIMLTARGDEDDRIRGLETG
                     ADDFVPKPFSPKELVARANALLRRSVPDLMTEKLNYGGIELDTAAHRVRRNGQAVSLG
                     PTEYRLLHHFLRNPERVYSRQQLLDIIWPHNEEVELRTVDVLIRRLRVALGPGEDVIR
                     TVRSEGYSLDTCVG"
     gene            complement(5590..6219)
                     /locus_tag="VE968_06745"
     CDS             complement(5590..6219)
                     /locus_tag="VE968_06745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HZU51556.1"
                     /translation="MGHSSYDPVEQGPAWNAGKKLGAKRPLKPKEIWEIRFMLDREHR
                     LRDRALFDLAIDSKLRGCDLVKVRIGDLVSGGRVRNRAMVIQQKTKRPVQFELLEPAR
                     SSLLAWLERRGGSLESHAFPSRVDRLDHLSTRQYSRLVEEWVSGIGLRKEDYGTHSLR
                     RTKAALIYKQTGNLRAVQILLGHSKIETTVRYLGVEVEDALTLAEATEV"
     gene            complement(6428..>7197)
                     /locus_tag="VE968_06750"
     CDS             complement(6428..>7197)
                     /locus_tag="VE968_06750"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HZU51557.1"
                     /translation="EGNVLAARLCSILLGPSRHLWVRKHGYHHRHANVFGWDDDLETR
                     GLLRLSPAYAWQPRFRRQELKAILYYGLNTMEWVFWKDFRSVAKGRLNKWHTLKLDRK
                     EEIEFVICKALYLILLFLPPFIMLPFWWAIAAFILFHLVFGWVLAAVFQVAHLTLGMG
                     FDGVRAGDDWAMHQVRTSANFATHSRFITWFTAGLNHQLEHHLFPNVAHTHYSGLRPI
                     VRAVAQRHGLECHELGSLPSAVGQHFALLKSLGTVTL"
BASE COUNT         1411 a         2257 c         2149 g         1380 t
ORIGIN      
        1 gcagtgagat cgggaagggc acgaccgtcg tcgtccggct tccgacgcga tcttagagcc
       61 gccgtcacac tggcgtaagg ccaatgtcac acagctgtca caaccgcctt ctaagcgggg
      121 gctgagttca acgactctgg aaaattgtca tgaaacagct ctttgccgtc cttccgctca
      181 ccgttgcgct ggttgcctgc ggtagcaatg ccggcagcca aggcggcaac gcggctggcc
      241 cctcgggggc gcaagtcact ggcgcgggct cgaccttcgt ctatcccgtg ctgtccgcct
      301 gggctgcgga ctatcggaaa gaatccggag ccagcatcaa ttatcagtcg atcgggtcag
      361 gtgccggaat ctcgcaagcg aaggcaggca ccgtcgactt cggggcgact gaccagccgc
      421 tgggcagcga cgagctgggg caggcccatc tggcgcaatt cccgatcgtc atcggcggaa
      481 tcgtcgcggt cgtgaacatt cccggactca acgccggcca gctgaagctc acggggccgg
      541 tgcttgccga catcttcgcc ggcaaggtca agagttggaa cgatccggtc gtcaccaagc
      601 tcaatccggg cctaaagttg ccggccgcaa ccatcgcggt ggtgcaccgg tctgacgggt
      661 cggggacgac gttcaatttt acccattatc tttctcaggt gagcccgtcg tggaagagcg
      721 gtccgggtga aggcaagacg gtcaactggc cttccggcgt cggtgggaag ggcaatgaag
      781 gcgtcgccgg ctacgtaaag cagatcccga attcgatcgg ctacgttgaa tatgcctacg
      841 tcatccaaaa caagatgacc tacgcgcagc tgcagaacgc ggccggcaac ttcgtcacgc
      901 cgagcgccgc gaccttctcc aatgccgcgg agagcgccga ctggaagaat gccaaagact
      961 tcaacctggt catgaccaac gcgcccgggg cggacgccta tccgatcacc gcgacgacgt
     1021 tcatcctcat gccgacgcaa cccagggata ggacgaagtc tgacgctgca atcgcgttct
     1081 tcaaatatgc gctcgagaag gggcaggcgc aggcgaacaa gctcgactat gtcccgcttc
     1141 cggccggcct cgtgcaacag atcgaaacct atatcggcgc cacgatcaag tgaatgcaag
     1201 cctcgcccgc gagcagaatg cagcagcggc gccgataagg agcggcgccg ccgccgatcg
     1261 gctcttccag ctgattaccg ctgcagcggc atggcttgtc ctgctgctcc tgggtgccgc
     1321 ggccttgtcc atggcgtggg gcggccgcct ggcattcaag acgttcgggt cgcgcttcat
     1381 caccagcagc gactgggatg ccgttggcgg ccatttcggg gcgctggttc caatctacgg
     1441 aacgctcgtg acctcggcga tcgcgctgat tatcgccgtg cctgtcagca ttggcatcgc
     1501 acttttcctc actgacatcg cgccccgctg gacgcgtgcg cctatcgcca tggccatcga
     1561 actgctcgcg gcgattccga gcatcatcta cggtatgtgg gggctgttcg tcttcgcgcc
     1621 gttcatggct gcccatgtcg agccatggct cagcgattcc cttggaaacg tggcgatcgt
     1681 cggccctctg ttcagcggcc ctccaatcgg gatcggaatg ctgacggccg gcatcgtcct
     1741 ggggatcatg gtgatcccct tcattgcgtc ggtcgcgcgg gaagtgttca acgccgtacc
     1801 agcgccgctt cgcgaatcgg cggtagctct gggagccacg cgctgggaga tcctgagccg
     1861 cgtgacgctg ccctacacgc gctcagcgat catcggggca gtcttcctcg gcctgggccg
     1921 tgcgctcggc gaaacgatgg ccgtcacctc gtcctcggga acgcgcacga tctctcggtc
     1981 tcactcctga tgccgagcaa ctcgattgcc gctgcgatcg ccaacgagtt cactgaggcg
     2041 gatactgatc tttatcgctc gtcgctcatc ggcctcgcat tcctcctgtt tgtagtgacg
     2101 ctgatcgtcc tcggcattgc caagctgctg ctgcttcgga tgaatcgtca gttcggaagg
     2161 actcactgag atggcgatcc ccgttcgccg ccgcgcagct gacatagccg cattcctctt
     2221 cgccagcgcg gccacggcat ttgggctcct atggctgttc tggatcctgt ggaccacgct
     2281 tcggcaaggg gcggcggcac tgacgccgga gctgttcacc cagatgacgc caccgccggg
     2341 gacgaccggc gggctcctca atgcgttcta cggaagtgcg atcatggttc ttctcgccgt
     2401 ggtcatcggc gctccgctcg gcgtcgcggc cggcacttac ttggccgaac acgggcgcca
     2461 ctcccgcctc gcgacggtgg tgagcttcct caacgacgtg ctgttgagcg cgccctcgat
     2521 cgtgatcggc ctgttcgtct acgagctgct agtcgtgacc gcgggccatt tctccgggta
     2581 cgcgggcgcg ctagcgctag cgatgatcct gcttccgatc gtcgtccgca ccaccgagga
     2641 atccttgcga ctcgtgcccg accaaatgcg cgaggcgggc ttcgctctcg gtttgccgcg
     2701 ctggcgcgta acttcgcaga taatctacaa ggccgcgctc agcgccatcc tcaccggcat
     2761 cctgctggga attgcgcgga tcgccggcga gacggcaccc ttgctcttca cggccctcaa
     2821 caatcagttc tggagcgcga acctcaacgg gcccctcgcg aacctcccgg tggtaatttt
     2881 ccaatatgcg atgagcccgt atgacgagtg gcacacactc gcctgggcgg gtgcattcgt
     2941 cctcacggca ttcgtgctca tcctcaatct cctggtgcgg ttcctcgccc ggaaaggcac
     3001 acatcgatga acgacgccgc gacgctcgtt cgaattgaga ccaaggaaac gccagacctg
     3061 ccggcggcgc ccggcgcgat cctcatgcgc aatctcaact ttcactacgg caaggtacat
     3121 gcgctgaagg acgtgaccat gaccgtcccc gccaatgccg ttacggccat cattggtccg
     3181 tccggctgcg gcaaatcgac cctgctcagg acgatcaacc gcatatacga actctaccca
     3241 gagcagcagg cgactggcga gatcatcatc gatgaccgca acgtcctcga tcgccgctat
     3301 ccgctggcgg atctgcggcg gcttgttggg atggtgttcc agaagccgac gcccttcccc
     3361 tcatccattc gcgccaacgt tgctttcgcg ctgtcttatt atgagcgact gtcgaagtcg
     3421 gagctcaacg accgcgtgga ggacgctctc cgccaggcgg ccctatggga cgaggtgaag
     3481 gacaagctca accacagcgc attgtcacta tccggcgggc agcagcagcg gttgtgcatc
     3541 gctcgcgcga tcgcggttaa gcccgagatc ttgctactcg acgaggcgac atcggcgctc
     3601 gatccgattt cgacggccaa aatcgaagag ctgatccatg agctgagcga gcgcttcacg
     3661 atcatgatcg tcacgcacaa catgcagcag gcggctcgcg tgtcgcggcg gacggccttc
     3721 ttccatctcg gtgagctgat cgagttcggc aagacgagcg acattttcac gaatccgcgc
     3781 gagcagcgga ccaaggacta catcaccggc cggttcggct gactggagcg aacatgcagc
     3841 aaacccggga acacacgctc aaagccttcg accaagatct ggaacggtta cgagcgctca
     3901 tcagccaaat gggcggtctt gctgagcatg cgatcggtga ggcgatgcgc tgcctggtgg
     3961 agcgcgacct ggacggcgct gagggtgtca ttaaggacga caagaagctt gatgcgctcg
     4021 aagtcgagac tgaacgccgg gccgttcagc tgattgccct tcgcgcgcca atggcagagg
     4081 accttcgcga cgttgtcgcc gcgctcaaga tttctggcgt agttgagcgg atcggcgact
     4141 atgccaagaa catcgcaaag cgcgttccac tgctggagaa cgccgggaag atcgagccgc
     4201 tttcgctgct gccggagatg gcgcggattg caaccggcat ggtgcacgat gttctcgacg
     4261 ccttcatcga gcgtgacgct gaagccgcgt accgagtgtg ccaacgtgac gacgcggtgg
     4321 atgacttcta tgattccatc ttccgcgctc tgctcactca tatgatggag aatccgcaga
     4381 gtatcggtca ggcgacgcat ctgctcttcg ttgccaagaa cctcgagcgg gtcggcgacc
     4441 acgcgacgaa catcgctgag atggtctatt atgcagcgac cggccagcat atgaccgacc
     4501 ggcccggcaa gtcgccgaaa tgaggtccac gacgacgaag cggctcctcg tcgtggagga
     4561 cgacagaccg attgcagaac tgctgaagtt ccacttcacg ggtgctggct tcacggtcac
     4621 cacgacgcca agcggcgacg aggccctgat cctgatcgag gagatcaggc ctgacctcgt
     4681 cattcttgac tggatgatcg aagggacgag cggaattgaa gtctgtcgtc gggtgcgacg
     4741 cagcaatgcc accgcaacct tgcctatcat catgctgacc gcgcggggcg acgaggacga
     4801 ccgcatccga ggactcgaaa ccggtgcgga cgatttcgtt cctaagccgt ttagcccgaa
     4861 agagctggtg gcgcgcgcca atgcattact gcggcgctcg gtccccgacc tgatgaccga
     4921 aaaactgaac tacggcggaa ttgagctcga tacggccgcg cacagggttc gcaggaacgg
     4981 ccaagcagtg tcgctcggtc cgaccgagta ccggctgctg caccacttcc tgcgaaatcc
     5041 ggaacgagtc tactcgcgtc agcaactgct cgacatcatt tggccgcaca acgaagaagt
     5101 cgagcttcgc actgtcgacg ttctcatccg gcgcctccgc gttgcactcg gccccggcga
     5161 agatgtgatc cgcacggtgc gctcggaagg ctattcgctg gacacttgcg tcggctgaac
     5221 gggcggacgc gcgtcgctca catcgtcatc gatctgacac gcgccagcca ttcgcgcgca
     5281 acctcgttcg cgtatcgccg ccgacggagg tgttcgatgg ctcaggaaga atccgattat
     5341 cttcgcaggc gcgagcgaca agagcgggcg gccgctaagg cagcgctcaa cacgagcgcg
     5401 cgccaagcgc atcagcattt ggcccaatgc tatgccgcgc ttctacatgg cctcgcgtcg
     5461 tacgaaccgc tggcgatgtt acgccgggaa ggactcctct gaaccggaca ctcgcccggt
     5521 gccacgccga cggcctgctt tcggccaaac cacgccggcg cccatacgag ataagcgccg
     5581 gccgggtagt cagacttcag tcgcctcagc caaggtgagc gcgtcttcaa cctcgacccc
     5641 caggtacctc acggtagttt ctatcttcga atgcccaagg aggatctgca ctgctcgcag
     5701 attcccggtt tgcttgtaga tcagcgcagc cttagtccgt cgaagagagt gagttccgta
     5761 gtcctccttc cgaagcccga taccgctgac ccactcttca acaagcctcg agtactggcg
     5821 cgtgctgaga tgatcgagcc tatcgacgcg gctcgggaag gcgtggcttt ccaacgagcc
     5881 accacggcgt tccaaccacg cgagcaagct tgaacgggcg ggttcgagca actcgaattg
     5941 gactggtcgc tttgtcttct gctggatgac catagcgcga tttcgaacgc gaccaccgga
     6001 cacgaggtca ccgatgcgaa ctttgacgag atcgcagccg cgaagtttgc tgtcgatcgc
     6061 aaggtcaaac agcgcccgat ctcgcagccg atgctcgcga tcgagcatga agcggatctc
     6121 ccaaatctcc tttggcttta gcggccgctt agcaccgagc ttcttgccag cgttccaggc
     6181 aggaccttgc tcaacagggt cgtatgacga gtgtcccatc gtcgttctcc gttggccgga
     6241 attggcctac cgaagaacga tccggtttag gtcacgtttt ggccggaagc ggactttccg
     6301 tctgggagca cgaccgccac tttctcgctg ttcccgcgtg ccgctaattg atgcgcgtcg
     6361 atgccaaatg gatcgcccac ccgcggtacg gaattcctgc gtccgcccat tttcgagcgg
     6421 ctacacttca tagggtcacg gtaccgagac tcttgagcag tgcaaaatgc tgaccgacag
     6481 cagacggtaa gctgcccagt tcgtggcatt ccaatccatg acgttgtgca acggcgcgga
     6541 cgatcggccg caggcccgaa taatgtgtgt gcgccacatt cggaaaaaga tgatgttcga
     6601 gctggtggtt tagtccggcg gtaaaccagg tgatgaaccg cgaatgcgtc gcgaaattcg
     6661 cactggtgcg gacctgatgc attgcccagt cgtcaccggc gcgaacgccg tcgaacccca
     6721 tgcccagcgt gagatgcgca acctggaaga cggcggccag cacccagccg aaaaccaggt
     6781 gaaacaggat aaacgccgcg attgcccacc agaacggcaa catgatgaag ggcggcagaa
     6841 aaaggaggat cagatagagt gccttgcaaa tgacgaactc gatttcttcc ttcctgtcca
     6901 gtttcagagt gtgccacttg tttagccgac ccttcgcgac ggagcggaag tctttccaga
     6961 atacccattc catcgtgttc aggccgtagt agagaattgc cttcagctcc tggcgtcgaa
     7021 agcgaggttg ccaggcataa gcgggggaca atcgaaggag gccgcgcgtc tcgagatcgt
     7081 catcccaccc gaagacgttg gcgtggcggt gatgatagcc atgcttgcga acccacaaat
     7141 ggcgcgaagg cccgagcagt atcgaacata atctcgcagc cagaacgttg ccttcgg
//
LOCUS       DASRBJ010000242         3313 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_539381,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000242 DASRBJ010000000
VERSION     DASRBJ010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3313
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_539381"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..559
                     /locus_tag="VE968_06755"
     CDS             <1..559
                     /locus_tag="VE968_06755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003040450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidase dimerization domain-containing
                     protein"
                     /protein_id="HZU51558.1"
                     /translation="RIIDEFRREIPEEKLTYNVGLIGGGQTATLDTDKIRLEATGKTN
                     IIAATAVARGDLRAISQEQIDRVEAKMRAIVERPLRGAQSTISFDPDIYPPMPPTNGN
                     RALLADLNGVNRDLGLAEMAELDPAERGAGDISFVAAEVDGLAGLGPASSGSHTASET
                     VDLPSISRQAKRAAILMSRLAREHR"
     gene            696..2600
                     /locus_tag="VE968_06760"
     CDS             696..2600
                     /locus_tag="VE968_06760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009823858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HZU51559.1"
                     /translation="MDQKTTDDPSKLLVQSIIDYAIYMLDPQGFVTSWNAGAERIKGF
                     QTEEIVGKHFSTFYTEEDRQAGMPQRVLATARKEGKFEGEGWRVRKDGTRFWASVVVD
                     RINDENGELVGFAKITRDMTEKRDAQNALLEAERRFRILVEGVTDYAIYMLDQDGRVT
                     NWNAGAERIKGYTPDEIIGEHFSRFYTPEDFNAGIPFKALETARETGRYEAEGWRVRK
                     DGTRFWASVVLDAIRDPDGRLLGFAKITRDMTEKREAQKRLDESREQLFRSQKMEALG
                     QLTGGLAHDFNNLLTAILGACELGLRNLQDPDKIKRLLDGVRGSAQRGAGLTKQLLAF
                     ARAQQLEITQIDLREFFSEVATLIRPSLRSNIELVTELSDQLWPVDADAGALELAILN
                     LAFNARDAMKDGGRLKISAQNLVLEGNPDGLRGEHVALQVADTGEGMSADVMERVFEP
                     FFTTKSFGEGTGLGLSQVFGFAKQIGGGVTVDSKKGRGATFTIYLPASRGATAAESRQ
                     NGGTSLERVLIVEDDTLVAELAAGMLSELGFECTVAHSAKDALERLAGGEKPKLIFSD
                     IVMPGGISGIELARKVRDRFPELPILLTTGYSEQIGGTHGFPILQKPYEMEKLASALG
                     NVLKREIPLD"
     gene            2694..2945
                     /locus_tag="VE968_06765"
     CDS             2694..2945
                     /locus_tag="VE968_06765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51560.1"
                     /translation="MATTAHRPVPMHLWAVGAIALLYSCFGAYDYVMSHMRDLQYLAK
                     AMPGVDPNAALAWMDNFPGYAKVGWALGVWGGLLVPFCC"
     gene            complement(3113..>3313)
                     /locus_tag="VE968_06770"
     CDS             complement(3113..>3313)
                     /locus_tag="VE968_06770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51561.1"
                     /translation="FNSPQPVTAASMVDIIDTSASRRVARNVAQRASAAITQQFETHS
                     IALTNSRDVLVSAEQAALRHRA"
BASE COUNT          712 a          919 c         1034 g          648 t
ORIGIN      
        1 gcgcattatc gatgaattcc gacgcgagat tccagaagaa aagctcacct acaacgtcgg
       61 actgatcggc ggcggacaga ccgcgactct cgacaccgac aagatccgcc tcgaggcgac
      121 ggggaagacc aacataatcg ctgcaaccgc ggtcgcgcgc ggcgatcttc gtgcgatcag
      181 ccaggagcag atcgaccgcg tcgaagccaa gatgcgggcg atcgttgaac ggccgctccg
      241 aggtgcacag tcgacgatca gcttcgaccc ggacatctat ccgccaatgc cgccgacaaa
      301 cggcaatcgc gcgctcctcg ctgacctgaa tggcgtcaat cgcgacctgg gcctggccga
      361 gatggcggaa ctcgatcctg ccgaacgtgg tgccggcgac atcagcttcg ttgctgccga
      421 agtcgatggt ttggctgggt tgggtccagc gagttcgggg tcgcacaccg cttcagagac
      481 agttgacctt ccctcgatca gcaggcaggc gaaacgggcg gcgatcctga tgagccggtt
      541 ggcaagggag catcgctagc tcccagctcg gcaatacaga caaactactg tactttcgtg
      601 caaccgcaac cgaagttgcg ggttaagctt catcgcgcag ttgcgcgtgt tgagttcggc
      661 ggggagcaat gccgttggca ggcgacgggg atttagtgga tcagaagact accgatgacc
      721 cttctaagct gctcgtgcag tcgatcatcg actatgcgat ctacatgctt gatccacaag
      781 ggttcgtgac gagctggaac gccggagcgg aacgcatcaa gggcttccag accgaagaaa
      841 tcgtcggcaa gcatttttcc actttctaca cggaggagga ccgacaggcg ggaatgccgc
      901 agcgggtcct tgcgaccgct cgaaaggagg gaaagttcga aggcgaaggc tggcgcgtcc
      961 gcaaggatgg cactcggttc tgggcgagcg ttgttgtcga tcggataaac gacgagaatg
     1021 gggaactcgt cggtttcgca aaaatcacgc gcgacatgac cgaaaagcgc gatgcgcaaa
     1081 acgcgctgct cgaagcggag cgacgatttc ggatccttgt cgaaggagtg acggattacg
     1141 cgatctacat gcttgaccaa gatggccgag ttaccaattg gaatgccgga gccgagcgca
     1201 tcaagggcta cactcctgac gagattatcg gcgaacattt cagccggttc tatacgcccg
     1261 aagacttcaa tgccggcatc cccttcaagg cactggagac ggcgcgcgag accggtcgat
     1321 acgaagccga gggttggcgc gttcgcaagg atggtacgcg cttctgggcg agtgtggtgc
     1381 tggacgccat ccgcgatcct gacggacggc tgctcggctt cgcgaagatc acccgcgaca
     1441 tgaccgagaa acgggaagca cagaaaaggc tggacgagtc tcgtgaacag ctgttccgct
     1501 cccagaagat ggaagctctc gggcaactga ccggcggcct tgcccatgat ttcaacaatc
     1561 tccttacggc aatcctcgga gcctgcgagc ttggcctacg caatctgcaa gatccggaca
     1621 aaatcaaacg gcttctcgac ggcgttcggg gttcggcgca gcgtggcgcg ggactgacga
     1681 aacagcttct cgccttcgct cgcgcgcaac agctggaaat cacccagatc gatctgaggg
     1741 agttcttcag cgaggttgcg acgctgatac ggccgtcgct gcgctcgaac atcgaactcg
     1801 tgacggagct ttcggatcag ctgtggccgg ttgatgccga tgccggcgca ttggagcttg
     1861 caatcctcaa tctggcattc aacgcacgtg atgcgatgaa agatggcggg cggctcaaga
     1921 taagcgcgca aaacctcgtt ctcgagggca accccgacgg ccttcgcggc gaacatgttg
     1981 cactccaggt cgccgataca ggcgaaggca tgagcgccga tgtcatggaa cgggtgttcg
     2041 agccgttttt cacgacgaaa agcttcggag aaggaaccgg cttggggctg agccaagtat
     2101 tcggctttgc caagcaaatc ggtggaggtg tcactgtcga ctcaaagaaa gggcggggcg
     2161 caacattcac catctatttg ccagcgagcc ggggagcgac cgcggcggaa agtcggcaga
     2221 atggcgggac gtcgctcgag cgcgtcctca tcgttgaaga tgataccctc gttgccgaac
     2281 ttgccgccgg aatgctgagc gaacttgggt tcgaatgcac cgtcgcccat agtgcaaagg
     2341 acgcgcttga gcggctcgcg ggaggcgaaa aacccaagct cattttttcc gacattgtca
     2401 tgccaggcgg catcagtggc atcgagctcg cgcgcaaagt gcgcgatcgg tttcccgagc
     2461 tgccaattct gctgacgacc ggctacagcg agcagatcgg gggaactcac gggtttccca
     2521 tacttcagaa gccttatgaa atggagaagc tcgcttccgc acttggaaat gtgctcaagc
     2581 gcgaaattcc tttggattga agagcttggt gaaaggccat tgacaagtgg ctgacggtgg
     2641 gcgcctcatc accgccgccg cgcccaacgc ggtgcgggcg tcagggggtt ccaatggcaa
     2701 cgactgcaca cagaccggtg cccatgcact tatgggcggt gggcgcgatc gcgctcttgt
     2761 acagctgctt tggcgcatat gattacgtca tgagccacat gcgcgacctg cagtatcttg
     2821 caaaggctat gcccggcgtt gatcccaatg ccgcgctcgc ctggatggat aactttcctg
     2881 gatacgccaa agtcggatgg gcacttggcg tttggggagg gttgctcgtt ccattctgct
     2941 gctgatccgg agccgcttcg cattctgggc ctattgcgtt tcggcagtag ggatcgttct
     3001 tagcattggt tatcagatga cgctcgcgcc cccgctgcag ggcaacaagg gcactgcatc
     3061 agtgctgatg ccgtggttga tcatcgtcat cggtgtggcg ttgctgcttt attcacgcgc
     3121 gatgacgaag cgcggcttgc tccgctgata cgagaacatc gcgtgaattg gtcagcgcga
     3181 tagaatgcgt ttcaaactgt tgcgtaattg ctgcactcgc gcgttgagcg acatttcgcg
     3241 caacgcgcct acttgcactc gtgtcgataa tgtcgaccat gctggcggcc gtgacgggct
     3301 ggggggagtt gaa
//
LOCUS       DASRBJ010000243         2220 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_85376,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000243 DASRBJ010000000
VERSION     DASRBJ010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85376"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(34..588)
                     /gene="dcd"
                     /locus_tag="VE968_06775"
     CDS             complement(34..588)
                     /gene="dcd"
                     /locus_tag="VE968_06775"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009394 - 2'-deoxyribonucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HZU51562.1"
                     /translation="MAILSDRWIREQAENHRMIEPFVEAQRREGCISFGLSSYGYDAR
                     VADEFKIFTNVDNALVDPKDFAHNSFVDRKTDVCIIPPNSFALARTVEYFRVPRDVLV
                     ICLGKSTYARCGIIVNVTPLEPGWEGHVTLEFSNTTPLPAKVYANEGACQFLFLKGNE
                     PCEVSYADRAGKYMGQKGVTLPRL"
     gene            773..>2220
                     /locus_tag="VE968_06780"
     CDS             773..>2220
                     /locus_tag="VE968_06780"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010339984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HZU51563.1"
                     /translation="MAEVVRIAEPVDPATNPVLPQNVEAEAALLGALMIDNRLVEDIG
                     MKLRPHHFFEPLHGRIYEAILRLTDSNRVANPVTLKPLFDADDGMKEVGGPAYLAQLT
                     GSGAAVIGARDFAGQIYDLALLRALVGVGRDLVEGALDTSEDVAPLAQIERAETELYK
                     VAEEGGSEGKAKSFGEATKEALQLAEKALNSGGHLSGFTTGLDSLNTKIGGLHKSDLI
                     IVAGRPGMGKSSLATNMAFNASKRLLQDQEDGIEKAKSAGAPVALFSLEMSADQLATR
                     ILAEQSGISSENLRMGRISQQEFRSLARAAAELQSLPLYIDDTPGLTIAALRARARRL
                     KRQKGIGIVIVDYLQLLQGTGKGSAGDNRVQEISEISRGLKQLAKELDVPVIALSQLS
                     RAVEQREDKRPQLSDLRESGSIEQDADIVIFIYREDYYLAAKQPADDHPDFASWQEEM
                     ARAYGLAEIIVAKQRHGSTGKVRVKFDSRITK"
BASE COUNT          479 a          630 c          667 g          444 t
ORIGIN      
        1 aacgacagaa tgcaagcgaa cctgcggtcc ttctcagagc cttggtaatg tgacgccttt
       61 ctgtcccatg tatttgcccg ccctgtccgc atagctcacc tcgcagggtt cattcccttt
      121 aagaaacagg aactggcaag ccccctcgtt cgcataaacc tttgccggca gtggcgttgt
      181 gtttgagaat tcgagcgtca cgtgtccttc ccacccaggt tcaagcggcg tcacattcac
      241 aatgatcccg cagcgggcgt aggttgactt gccaagacaa atgacaagca cgtcgcgcgg
      301 cacgcggaaa tattcgacgg tgcgcgcgag cgcgaagctg tttggaggga tgatgcagac
      361 atccgtcttg cgatcgacga agctgttgtg cgcaaagtcc ttggggtcga cgagcgcatt
      421 gtcgacgttg gtgaaaatct tgaactcgtc ggcaaccctc gcgtcatagc cataggacga
      481 aagaccgaag ctgatgcagc cttcgcgacg ctgggcctcg acgaagggtt caatcatgcg
      541 gtgattctcg gcttgctcgc gaatccagcg gtcagacaaa atcgccatgg tgagtgccta
      601 acgagacgac atgcgcgcat caatttgacc cgcattattt ctgtggatgg ggcgaggccg
      661 acaattttgc gagttcctgc ggccagcagc atgattcgtg cacatgctat ccacactcgt
      721 gctgcttatg ttccgtttgg gtgagctgcc gtaaaggcgt aggagagtcg tcatggctga
      781 agtcgtgcgt atcgctgaac cggttgatcc ggctaccaat ccggtcctgc cccagaatgt
      841 ggaagcggaa gccgcacttc tcggcgcgct gatgatcgac aacaggcttg ttgaagacat
      901 cggcatgaag cttcgaccgc accatttctt cgagccgctg cacggccgaa tctacgaggc
      961 catcctgcgc ctcaccgaca gcaaccgagt cgccaatccg gttaccttga agcccttgtt
     1021 cgatgctgat gacggcatga aggaggtcgg cggcccagcc tatctcgcgc aattgacggg
     1081 ctcaggcgcg gccgtgatcg gcgctcgtga ctttgctgga cagatctacg atctcgcgtt
     1141 gcttcgcgcc cttgtcggcg ttggccgcga cctcgtggaa ggcgcgctcg acacgagcga
     1201 ggacgttgcc cccctcgctc aaatcgagcg cgccgagacc gagttgtaca aggttgccga
     1261 ggagggcggt agcgaaggta aggcgaagag cttcggagag gcgacgaaag aggcgctcca
     1321 gctcgctgag aaggcgctga acagcggcgg gcatctttcc ggttttacga ccggtctcga
     1381 tagcctcaac acgaagatag gcggccttca caaatcagac ctgatcatcg tcgccggccg
     1441 tccgggcatg ggcaagagtt cgcttgcgac gaacatggca ttcaacgcat ccaaaaggct
     1501 gcttcaagac caggaagatg ggatcgaaaa ggccaagtca gcgggtgcac cggtggcgct
     1561 cttcagtctc gaaatgtccg ccgaccagct tgctactcga attctcgccg agcagtcggg
     1621 aattagctcc gagaacctcc ggatggggcg gataagccag caggaatttc gctcgctcgc
     1681 acgcgctgcc gccgagttgc agagcctgcc cttgtacatt gatgacacgc caggactgac
     1741 aatagcggcg cttcgtgcac gcgctcggcg gctgaaacgt cagaagggaa tcggcattgt
     1801 catcgtcgat tatctccagc tgctccaggg tacagggaag gggagtgctg gagataatcg
     1861 cgtgcaggaa atctctgaga tcagtcgcgg actaaagcag cttgcaaagg agctggacgt
     1921 gccggtgatt gcactttccc agctgagccg cgccgtcgag cagcgggaag acaagagacc
     1981 gcaactatcc gaccttcgcg agtcgggatc gatcgaacag gacgcggata tcgtcatctt
     2041 catttatcgc gaggattatt acctcgcggc gaagcagccc gccgacgatc atcccgactt
     2101 tgcttcctgg caggaggaaa tggcccgcgc gtacgggctt gccgagatca tcgttgccaa
     2161 gcagcgccac ggttcaacgg gaaaggtgcg ggtcaagttc gacagccgca tcacgaagtt
//
LOCUS       DASRBJ010000244         2466 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_592954,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000244 DASRBJ010000000
VERSION     DASRBJ010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2466
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_592954"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            124..2034
                     /gene="hscA"
                     /locus_tag="VE968_06785"
     CDS             124..2034
                     /gene="hscA"
                     /locus_tag="VE968_06785"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF003520.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HZU51564.1"
                     /translation="MPNNDRIVGIDLGTTNSLVAFMDRDTPVVIPGEDGSNLVPSLVA
                     LDEHEQIIVGNPARKYLIETPERAVYSIKRLMGRGIEDIKEELKLFPFRLAEGLKPGE
                     VLRIRLGDKEFTPPEISAFVLRQLKRNAERYFGAPVTKAVITVPAYFNDAQRQATKDA
                     GRIAGLEVLRLVNEPTAASLAYGLDKKKHGLVAVYDLGGGTFDVSILRLQDGIFEVVA
                     TNGDTHLGGDDIDNLLIAIALDDIQGDLKIDVRRNSSVVQAIRKAVIEAKIALSSKER
                     TTLDVTLEGGHRYQREITREQFEQLIEPILQRTVGPCKQALKDANLAPSEIEEVVLVG
                     GSTRIPKVRTLVENLFQRKPHTDLNPDEVVALGAAVQANILAGGSIATSDMLLLDVTP
                     LSLGIEALGGVVAKIIHRNSTIPASATEHFTTGVEGQTSVAIHVLQGERELAKDNRSL
                     ARFDLKGIPPMPAGLPRIEVKFLIDANGILHVSAREQRSGKEAEIEVQPSYGLTDEQV
                     ESMILDSFDYAEEDFRQRQLIEARNEAETIFGALEKGRKSPAWNQLTKDERSKIAKLE
                     KELVKAKSGDDYKTIREGIEALNQSTMRLAEMMMDSAVATALQGKNMDQADLGEGPTA
                     PHPIAPAEITRD"
     gene            2044..2460
                     /locus_tag="VE968_06790"
     CDS             2044..2460
                     /locus_tag="VE968_06790"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HZU51565.1"
                     /translation="MADEKTQGTAATLDKPAENLVQVTFLPLNKTVEFEHGKLPYKDH
                     GKPESLLDVALNNGIHLDHACGGNCACTTCHVVVKEGEECLSDMEDDEADRLDMAADL
                     TLHSRLGCQSVITKPGKIVVEIPAWNRNYVSEGGEH"
BASE COUNT          584 a          702 c          754 g          426 t
ORIGIN      
        1 agaaacgcgt cgcaaggtcc gcgacaaaat ggtggacctg ctgaaccgcc gctcctacat
       61 ccgcaatctg gttcgtgacg tcaacgaagt gcttgagccg taagagcagt ttcagaaaca
      121 gtaatgccga acaacgatcg catcgtcgga attgatcttg gcaccacgaa ctcactggtc
      181 gcgttcatgg accgggacac gcctgtggtc atcccgggcg aagacggctc gaacctggtg
      241 ccgtcactgg tcgcgctcga cgaacacgag cagatcatcg tgggaaatcc cgcgcgtaaa
      301 tacctgatcg aaactccgga gcgcgcggtg tattcgatca agcgcctgat gggccgcggc
      361 atcgaggata ttaaggaaga attgaagctg tttccattcc gcctcgctga aggactgaaa
      421 cccggcgagg tgctgcgaat caggctcggg gacaaggaat tcacgccacc ggaaatatcc
      481 gcttttgtcc tgcgccagct caaacgcaat gcggaacgct acttcggcgc gccggtcaca
      541 aaagccgtga tcacagttcc tgcatatttt aacgacgcgc agcgacaggc gacaaaagac
      601 gccggccgga tcgccgggct tgaagtcttg cgcctagtga acgaacctac cgcggcatca
      661 ctcgcttatg ggctcgataa gaagaaacac ggcctcgttg ccgtgtatga cttgggtggc
      721 ggcacgtttg atgtctcgat tcttcgcctg caggacggaa ttttcgaggt ggtggccacc
      781 aacggcgaca cgcacctcgg gggcgacgac atcgacaacc tgctgattgc gatcgcgctc
      841 gatgacatcc agggggatct gaaaattgat gtgcgccgca acagttcggt cgtgcaggcg
      901 atccgcaaag ctgtgatcga ggcaaagatt gctctctcct cgaaagagcg aactacgctc
      961 gacgtcacac tggagggcgg ccaccgctac cagcgggaaa tcacgcgcga gcagttcgag
     1021 caactgattg agccgatttt gcagcggacc gtgggtccgt gcaagcaggc gctgaaggat
     1081 gcgaacctcg cgccgtccga gatcgaggaa gtcgtcctgg tgggcggctc tacgcgcatt
     1141 ccgaaggtgc gcacgctggt cgaaaatctt ttccagcgca agccgcacac cgacctcaat
     1201 ccagacgaag tggttgcgtt gggcgcggct gttcaagcga acattcttgc gggcggatcc
     1261 atcgcgacca gcgacatgct tctgctcgac gtgacgccgc tctcgttggg aatcgaagcc
     1321 ttgggcggcg tggtcgcgaa gatcattcat cgcaattcaa cgattccggc ttccgccacc
     1381 gaacacttca cgaccggcgt cgagggccag accagcgtcg cgatccacgt gctgcaaggc
     1441 gagcgcgaac tggcgaagga caacaggtca ctcgcgcgtt tcgatctgaa gggaattcca
     1501 ccaatgccgg cagggctgcc gcgcatcgag gtgaagtttc tgatcgacgc gaacggcatc
     1561 ctgcacgtct ccgcgcgcga gcagcgcagc ggcaaggaag ccgaaattga ggtgcagccg
     1621 agctacggcc tcaccgacga gcaggtcgag agcatgatcc tcgattcgtt cgactacgcc
     1681 gaggaagact tccggcagcg gcagctcatc gaagcacgta acgaggcgga aacgattttc
     1741 ggcgcgctcg aaaagggacg caaatcgccg gcgtggaatc aactcacgaa ggacgagcgg
     1801 tcgaaaatcg ccaagctcga aaaagagctg gtgaaggcga agtcgggtga cgattacaaa
     1861 acgatccgcg aggggattga agccctgaac cagtcgacga tgcgcttggc ggaaatgatg
     1921 atggactcgg cggtcgcgac ggcgctgcag ggcaagaaca tggaccaggc ggatctcggc
     1981 gaagggccga ctgcgccgca tcccatcgcg ccggccgaga tcacgcggga ttagcgagga
     2041 attatggcag acgaaaaaac gcaaggcacg gcggcaacgc tggacaaacc ggccgaaaac
     2101 ctggtgcagg tcacgttcct gccgctgaat aagaccgtcg aattcgagca cggcaaactg
     2161 ccctataagg atcacggcaa acccgagtct ctgctcgatg tcgccttaaa taacggcatc
     2221 catctggatc acgcgtgcgg cggaaattgc gcgtgtacca cgtgtcacgt cgttgtaaag
     2281 gaaggcgagg agtgtctcag cgacatggaa gacgacgaag ccgatcgcct cgacatggcc
     2341 gccgatctta cgctgcactc gcgcctgggc tgccagtcgg tgattacaaa gcccggcaag
     2401 atcgtggttg aaatccccgc ctggaatcgg aactacgttt ctgaaggcgg agaacactaa
     2461 aaacag
//
LOCUS       DASRBJ010000245         2796 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_634634,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000245 DASRBJ010000000
VERSION     DASRBJ010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2796
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_634634"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            827..1636
                     /locus_tag="VE968_06795"
     CDS             827..1636
                     /locus_tag="VE968_06795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51566.1"
                     /translation="MPRLVSAPFFSAHPVFDRAEYAAAVGRDPSDKVVTAMLAQHLQA
                     GNIKRVARGVFASVPKHADARKWSVDRFLAASRLRRGAVIAYHSALELHGSAYTEGYE
                     VQMIAPGEPGVLEAAGFSCRFVKPPRGFARRDGELKDGVMVVDRMGLDVRVTTVERTI
                     ADLFDRYELAGGTEELFNSLDLVARVDAAALVRHMRALGNAAAAGALGYWLEREQQRL
                     GIPDTALRQLHAMAPRQARYALGTKPGEGRTAKGWNVILPLDVVERRFEGL"
     gene            1637..2614
                     /locus_tag="VE968_06800"
     CDS             1637..2614
                     /locus_tag="VE968_06800"
                     /inference="COORDINATES: protein motif:HMM:NF020419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyl transferase AbiEii/AbiGii toxin
                     family protein"
                     /protein_id="HZU51567.1"
                     /translation="MAAPSIQTLQRIADDTGHQAGTLEKVLRLLDILQETAGDTILSE
                     QLALKGGTALNVFHLGLDRLSVDIDLNYIGALERSAMEAERPEVEAALNRLLASQGYV
                     VRRQPDEHAGGKWLLRFASALGGNATLELDVNYMARQPLFGATRMPSTALGDVRAERV
                     LVLDLHEIVAGKLVALFDRHAARDLFDARRILSLDGLDWKKIKAAMLAFGACGRRDWR
                     TVSIDSIKGDPRELRQKLMICLPRGYFADRRAIDTWVEETVALCREKFAFLLDLTTAE
                     REFLDCVLDRGEINTDLLDVAPEIRARMRAMPMLAWKCQNVRKHRGLDS"
BASE COUNT          521 a          832 c          881 g          562 t
ORIGIN      
        1 gctggcgcgt tgcccatatg cccacagccg ccacaaccac aacaggcttt gatcgcataa
       61 gggcttcaca aggtcggaac ggtccagctt ccaactaaga aaccggtccg agcggtccca
      121 cggatggggt ccacttcaca ctcggtttgg gtttgcacgc cggacttcca gcgcgtcgtg
      181 aagctgcgcc gtaccatgac tgaccgcacg cccagcgttc tgagcgcccg tttcgaagag
      241 ggaagcgccc aggcgatagt caggcggctt ggtcgttccc gcccgatttg gtctcaggct
      301 taatcgcaac tgcctcttcg aattggctcg catgcggctg cagtccgacg gctatggctg
      361 tgatgaatga tatctgccat cgcgcctggt ctcgcggcgt gcatccgttc ggtcgcgtgt
      421 cgatgactgt cgatgctacg ggcgagacgg tgccggggcc cggactcgtg catgggccca
      481 atgcccaagc tgatctccca aggagaggta acgagcgcgg cgagcgtgaa cgttatgtgc
      541 tataggctct gccggcgagc ccgtgcggtg tcttgcgcga agagggaacg atgacgcgca
      601 aaatcgtaga gtggcgcacc caacaggatt cgaacctgtg acctccacct tcggagggca
      661 gaccggcagg gccataactt tgttgttact gtatgaagcg atatatgaga tgtggctaag
      721 gcctgtgtac gagaatgact gtttggggaa gccggactct cccattgacg gagtaagcca
      781 tatttgatat atggttatat caggctaaga caaagccact gatatcatgc cccggctcgt
      841 ctccgctcct ttctttagcg cgcacccggt cttcgatcgc gcggagtacg cggctgcggt
      901 aggccgagat ccgagtgaca aggtcgtcac cgcgatgctt gctcagcacc ttcaagccgg
      961 caacatcaag cgggtcgcgc ggggcgtctt cgcttccgtt cccaaacacg ccgacgcccg
     1021 aaagtggtcg gtcgatcggt tcttggcagc atcccgacta cgccggggcg ctgtcatcgc
     1081 ctatcactcg gcgctggagc tgcacggctc cgcctacacg gaggggtatg aggtccagat
     1141 gatcgcgccc ggtgagccag gcgtgctcga agccgccggc ttctcctgcc gcttcgtcaa
     1201 gccgccgcgc ggcttcgccc gacgagatgg agaattgaag gacggggtga tggtggttga
     1261 ccgcatgggg ctcgacgttc gcgtcacgac ggtggagcgc acgatcgcag atctgttcga
     1321 ccgctatgaa ctcgccggtg ggacggagga gctgttcaac tcgctcgatc tcgtcgcacg
     1381 ggtggatgct gccgcgctcg tccgccacat gcgcgcactt ggcaatgcgg cggcggctgg
     1441 cgcgctcggc tattggctcg aacgggagca gcaacggctt ggcattcccg atacggcgct
     1501 ccgacaactg cacgcgatgg caccgcgtca ggctcggtat gccctgggca caaagccagg
     1561 agaggggagg acagccaagg gctggaacgt aatcttaccc ctcgacgtcg tagaacgccg
     1621 gttcgagggg ctgtgagtgg cggcgccttc gattcagacg cttcagcgga ttgccgacga
     1681 taccggtcat caggccggga cgctcgaaaa ggtactccgg ctgctcgata tcctgcagga
     1741 aacagcgggc gacaccatcc tgagtgaaca gcttgctctc aagggcggca cggcgctcaa
     1801 tgtctttcac ctcggtctcg accggctgtc ggttgatatc gacctcaact atatcggcgc
     1861 ccttgagcga tcggcgatgg aagctgagcg gccagaggtc gaagctgctc tgaaccgtct
     1921 cctcgcatct caaggctatg tcgttcgacg ccagcctgac gaacatgcgg gcggcaagtg
     1981 gcttctgcgc tttgcctccg cgttgggcgg aaacgccacg ctggagctcg atgtgaacta
     2041 catggcgcgc cagccgctgt ttggcgccac tcgtatgccg tccactgcgc tcggcgacgt
     2101 acgcgcagaa cgagtgctgg tcctcgacct ccatgagatc gtcgctggca agcttgttgc
     2161 actcttcgac cggcacgcag cgcgcgatct ttttgacgcg cgccgcatcc tgtcgctcga
     2221 tggactcgac tggaaaaaga tcaaggccgc catgctcgct tttggcgcct gcgggcgccg
     2281 agactggcga acggtgtcaa tcgattccat caaaggtgat ccgcgcgagc ttcggcaaaa
     2341 gcttatgatt tgtctgccgc gtggctattt cgctgaccgg cgtgcgattg acacttgggt
     2401 tgaggaaacc gttgcgctct gccgagagaa atttgccttc cttctcgact tgacgacggc
     2461 cgagcgggag ttcctcgact gcgtactcga ccgtggggag atcaacaccg atctgctgga
     2521 tgttgcaccc gagatccgcg ctcgcatgag ggccatgccg atgcttgcct ggaagtgcca
     2581 gaacgtgcgg aagcatcgtg ggctcgacag ttgatgttcg gtttaatgga cgatgacgca
     2641 ccttcgtcgc tcctcgtgaa gcggccccct aaaagaccgg acagggccta ccccttggtt
     2701 aagcaccagg agtatgcctg tgtctatgac tgggaacatc gatcgggtcg aggtcatcac
     2761 atcggttcag cggcggcgcc gctggtcggc agaaga
//
LOCUS       DASRBJ010000246         5916 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_129754,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000246 DASRBJ010000000
VERSION     DASRBJ010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5916
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129754"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..190
                     /locus_tag="VE968_06805"
     CDS             <1..190
                     /locus_tag="VE968_06805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51568.1"
                     /translation="LAAIKLPPLFIALIVAELFFKFHSFTLEAIPFLALWYILRRLYA
                     PLERWASARLARRAARVV"
     gene            315..1880
                     /locus_tag="VE968_06810"
     CDS             315..1880
                     /locus_tag="VE968_06810"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HZU51569.1"
                     /translation="MWCNTQVTYSPSPSNSRSESEVDVNPLDARNLVGASKRFTNPST
                     YAFSLAAYASFDGGESWNEAAPFVLLGNADPNKVWSGISDPAIAWDNAGNCYLVALPF
                     PSSASPYSALGIAVYKSADGGRTWSGPNFIHQSTNDDKQWATGDRNPRSPHFGNVYAA
                     WDDGSKLAFARTTDHGATWQGVGAQPVGTALALDSFSPAVVVADDGSIYIFWISGSTI
                     KFVKSTDGGNSFSAPVIAASGLTTFSAALGSPGGFPKFPGMKFRVLTLPTACAGSGSN
                     LAVAWADYREGVSRVYYRRSTDGGASWLGAGSGEPLLTFAGVPGADQHDFHPQLASTL
                     SGTIGCCYYQLGPKWSGGPPLIDTMIAVSSDGGATFGSVERVSNVAWDPTVNAPWSHG
                     DPNTTFIGDYFGLAGVPGGFVPFWTDTRTGIQEIFSGRRLTIGPWTGVQFQGHLPAGA
                     TQSWFTFGWPACWHVAWDVVSITPHTGAPQVSWRVQVERATSGTITYWIKITNLTGKN
                     IDVEGRYAIFAAD"
     gene            1892..2149
                     /locus_tag="VE968_06815"
     CDS             1892..2149
                     /locus_tag="VE968_06815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51570.1"
                     /translation="MVVGVQFTGSLPAHATQRWFTFNWPAAWNVVWTVVSTSPVPGAP
                     QVEWEVAVERATASTITFWITIHNLTANLTNIEARYAITNI"
     gene            2160..2537
                     /locus_tag="VE968_06820"
     CDS             2160..2537
                     /locus_tag="VE968_06820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51571.1"
                     /translation="MRIIIDIDGATVVTRADASGQELTAPIAAAGTDAGSAPVELLRQ
                     HAAISQGLGEHGEHGTGERSPDREGEGLNPLRAGEKVARKRLRHSVQHFAHPLEIIDA
                     GSAPKALLGSEAEPRAKQPSRKK"
     gene            3033..4313
                     /locus_tag="VE968_06825"
     CDS             3033..4313
                     /locus_tag="VE968_06825"
                     /inference="COORDINATES: protein motif:HMM:NF024826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SidA/IucD/PvdA family monooxygenase"
                     /protein_id="HZU51572.1"
                     /translation="MARQRLAIIGAGPKAVAIATKAACLRDLAALPLEVVIFERDVIG
                     AAWTGQFGYTDGLQRLCTPAERDVGFPYDTDLAADLDRAMLARFSWTAFQIETERYGD
                     WVDRGRPKPTHQDFAQYLAWCLSGLGPIRFGPVTALKHRNGRWSVRYTSRDSGASISE
                     GRFDGVVVTGPGPQSTNLRKVADGRIFDGVDFWRPGVIAAVKQAAASGPDDPVVIIGS
                     GGTAAATAAALVRADISNDIRVLGSQAALYARADSYFENRTFRDPKFWSALSAADRRT
                     FSDRLTRGAVWSNVVNVLAGVERIDYLQGAAKEVRFDPPGTVGGALMVVYAPSAHPDA
                     EVPLQASAVIDATGFDPMWFRTLLSPSLARKLNNEKKMRTQMASDLSLPLEGVPRLHV
                     PMISQAVGPAYNSLMALGSLSDAVLRPYVSAALA"
     gene            4364..4690
                     /locus_tag="VE968_06830"
     CDS             4364..4690
                     /locus_tag="VE968_06830"
                     /inference="COORDINATES: protein motif:HMM:NF013561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HZU51573.1"
                     /translation="MSDTKENMVLRTVYLPLDLDRELRQLAFSRDVSKADLIRDFIHQ
                     GLGNVEASGEKTLAAKVQERIREHNSAIETAAGSKRTFSGSKEKTSRHRSSHRRASAG
                     HAGSGR"
     gene            5207..>5916
                     /locus_tag="VE968_06835"
     CDS             5207..>5916
                     /locus_tag="VE968_06835"
                     /inference="COORDINATES: protein motif:HMM:NF025022.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HZU51574.1"
                     /translation="MREAPEAQHDFVVVPDANMLIHGKALPDLPWAELGRDTIEVLYV
                     PSVIREVDNLKVQSGRPNKLARQLGADLRALRKTADRTAIVRERSPRVVKRLVVDQVT
                     RKFHRRLKLDHADQALINYCLSLKAAGRDVLLLTNDTICASTADDVGLPVLQVEDHWL
                     RNPEPNERDRENARLKEEIRRISASEPEIEIVFSSKDGARLSSLEAQLTRWPALTREQ
                     VDELFAQVQQGCPMATSF"
BASE COUNT         1179 a         1803 c         1787 g         1147 t
ORIGIN      
        1 gcttgcggca atcaaactgc cgccattgtt catcgcactg attgtcgcgg aactattctt
       61 caagttccac agcttcacgc tcgaagcgat cccgtttctc gcactgtggt acattcttcg
      121 gcggctgtat gctccgctcg agcgctgggc gagtgcccgg ctcgcgcgtc gcgcggcgcg
      181 cgtcgtgtaa gcgagggtgc cgacatcggc ggcagtgatc ccaagcgccg ccggcgaacg
      241 gcaaaagatg tcattgccgc aactcattag cggggggcgc acgactgcat cgtcaacagg
      301 gcaggacggc aattatgtgg tgcaacacgc aggtcaccta cagtcccagt ccaagcaatt
      361 cgcgtagcga gtcagaagtc gacgtgaacc cgctcgatgc acgtaatctc gtcggtgcct
      421 cgaagcgatt caccaacccc tcaacctatg cgttctcgct ggccgcctat gcgagcttcg
      481 atggcggcga atcctggaac gaagcagctc ccttcgtgct gcttggaaat gccgacccga
      541 acaaggtttg gtcggggatc tcagacccgg caattgcctg ggataatgcc ggcaactgtt
      601 acctcgtagc gcttcctttt ccgagcagcg ccagtcctta ttcagcgctc gggatcgcgg
      661 tctacaagtc cgccgatggc ggtcgcacgt ggagtggccc caatttcatt caccagagca
      721 ccaacgacga caaacaatgg gcgaccggcg acaggaatcc tcgaagcccc cacttcggga
      781 acgtctatgc ggcctgggat gacggctcga agttggcatt tgcgcggacc accgatcacg
      841 gcgccacctg gcaaggtgtc ggcgcgcagc cggtcggaac cgcgctcgcg ttggattcat
      901 tctcaccagc cgtcgtcgtt gccgacgacg gatcgatcta catcttttgg atctccggca
      961 gcacgatcaa gttcgtcaag tcgacggacg gcggcaactc cttctcagcg ccggttatcg
     1021 cagcgtccgg attgacaacc ttttcggcgg ccctcggctc gccgggtggc tttccaaagt
     1081 ttcccggaat gaagttccgt gtgctgacat tgccaaccgc gtgcgccggg tcgggcagca
     1141 acctggccgt cgcgtgggcc gattaccgcg agggcgtgtc gcgggtctat taccgtcgtt
     1201 cgacggacgg tggagcgtct tggctcggcg ccggctccgg agagcctctg ctgacgtttg
     1261 caggtgtgcc aggcgcggac cagcacgatt tccacccgca gcttgcaagc acactctcgg
     1321 gcaccatcgg ctgctgctat taccagcttg gtcccaaatg gtccggcggc ccaccgctca
     1381 tcgataccat gatcgcggtt tcgtccgacg gtggagcaac gttcggaagc gttgaacgtg
     1441 tttcgaacgt cgcgtgggac ccgacggtca atgcgccatg gtcgcatggc gaccccaaca
     1501 ccaccttcat cggtgattat ttcggcctcg ctggcgtgcc gggtggcttt gttcctttct
     1561 ggactgatac tcggacaggc attcaggaaa tcttctctgg ccgacggttg acgattggac
     1621 cttggaccgg agtccagttc cagggccacc tgcctgccgg cgcgacacag tcgtggttta
     1681 cgttcggctg gccggcgtgc tggcatgtcg cgtgggatgt cgtctcaatc acgccgcata
     1741 ccggcgcacc ccaagtcagc tggcgcgtac aggtcgaacg ggcgacgtcg ggaacgatca
     1801 cctactggat caagatcacc aacctgacgg ggaagaatat cgacgttgaa ggtcgctacg
     1861 cgatcttcgc cgccgactga aggaggcagc tatggtcgtt ggcgtccagt tcaccgggtc
     1921 ccttcccgca cacgcaacac agcgctggtt cacgttcaac tggcctgcag cttggaatgt
     1981 cgtctggacg gtcgtctcga ccagcccggt acctggcgca ccgcaggtcg aatgggaggt
     2041 tgccgtcgaa cgagcaacgg caagcaccat taccttctgg ataactattc acaacctgac
     2101 ggcaaacctc accaacatcg aggcgcgcta cgccatcacc aacatctaag gaaaaagaaa
     2161 tgcgcatcat tatcgacatc gacggcgcga ccgtcgtcac aagggcagac gcgtcgggcc
     2221 aggaactcac tgccccgatc gctgccgctg gaacggacgc gggctcagcg cccgtcgaac
     2281 tgcttcggca acatgcagcc atcagccaag gacttgggga gcatggcgaa catggaaccg
     2341 gcgagcgctc tccggaccgg gaaggcgaag gccttaatcc gcttcgcgcg ggcgaaaaag
     2401 tcgctcggaa gcgccttcgt cactcagttc aacactttgc tcatccgctc gagattatcg
     2461 acgcagggag cgccccgaag gcgctgttgg ggagtgaggc agagccacga gcaaagcagc
     2521 cgtccaggaa gaagtgaatt ccaggcgtcg gtgctcgcca acgatcaaag accttagctt
     2581 gtccaggttc ttcaagaaca aaccgcttct ctgcctagcc tcgctggatc gggcggtgac
     2641 cgacgggata agctcgggcg tcacttctca tcgaaaagga ggcgacgcat agatcggaag
     2701 gccatcgatc acatcccgcg acacaagcat ccccaggggc aaatcacacg cccaggcaac
     2761 gcttgcctga actcggctca agttgcattc caagccactg caggcgttgt ccgatgacgg
     2821 ctggcattgg cgtgatcgtt cgcgccgtgc ccaatcaaca caagtgcacg gcgtttctct
     2881 caaccggtag gagtgagggg cgacaagcag agcggacgcg ctgcataact gtgcgaattg
     2941 ccggcttctt cgtctgccgg cggcttgggc agcaatgctt tgccttttgc aacggaaatt
     3001 ggaacaaggg acgcgcgcaa gacggaaatt ggatggcaag gcagaggctg gcgatcattg
     3061 gtgcggggcc taaggcagta gcgattgcca ccaaggctgc gtgtcttcgc gaccttgccg
     3121 cgctcccgct tgaagtcgtg atcttcgaac gtgatgttat cggcgcggcc tggacggggc
     3181 aattcggata caccgacggg cttcagcgcc tctgcactcc tgccgagcgc gatgtcggct
     3241 tcccctatga caccgacctc gcagcagatc tcgatcgtgc gatgctggcg cggttctcct
     3301 ggacggcgtt ccagatcgaa accgagcgct atggcgactg ggtcgatcgc ggacgaccca
     3361 aaccaaccca ccaggacttc gcgcaatacc tcgcctggtg tctctccggt cttggaccaa
     3421 tacgctttgg tccggttacg gcactaaagc accgcaatgg ccgctggagc gtgcgctata
     3481 cgagccgaga cagcggagca tcgattagcg aaggccgctt cgacggtgta gtggtgaccg
     3541 gaccgggacc ccaatccaca aatttacgaa aagtcgccga tgggcgaatc tttgatgggg
     3601 tcgatttctg gcgcccgggc gtcatcgctg ccgtcaagca ggcggctgcc agcggcccgg
     3661 atgatcccgt tgttattatt ggctcggggg gtacggcagc cgcgacggcc gcagcgctcg
     3721 ttcgagcgga catcagcaat gacattcgcg tcctcggcag ccaggcggca ctttacgcgc
     3781 gtgccgacag ttattttgaa aatcgaacct ttcgtgatcc caagttctgg tcggctctta
     3841 gcgccgcaga ccgacgcacc ttttcagaca ggctcactcg cggcgccgtg tggtccaacg
     3901 tcgtcaacgt gctcgcgggc gtcgagagga tcgattattt gcagggagcc gccaaggaag
     3961 tacgcttcga tccgcccggc acggtcggcg gggcgctgat ggttgtctat gcgccgtccg
     4021 cgcatccgga tgccgaggtc ccgctgcagg cgtcggctgt cattgacgca accggatttg
     4081 atccgatgtg gtttcgcacg ttgctcagcc cgtcgcttgc aaggaagctt aacaacgaga
     4141 agaagatgcg aacacaaatg gcgagcgacc tgagcctgcc tcttgagggc gtgccgcgcc
     4201 tccacgtgcc gatgatctca caggctgtcg ggccagccta caattctctg atggcgcttg
     4261 gatcgctatc ggacgccgtc ctccgacctt atgtctccgc ggcactcgct tgaaatttac
     4321 gtgtttatat gtacatataa catcagatga gatggaggca atcatgtcgg acaccaaaga
     4381 gaatatggtc ttgcgcaccg tatatctgcc actggatctc gatcgcgagc tccgccagtt
     4441 ggcattcagc cgcgatgtca gcaaggccga cctgatccgc gatttcatcc atcagggact
     4501 cggaaacgtc gaggcttctg gcgagaagac tctcgccgcg aaggttcaag agcgcatccg
     4561 ggagcacaac tcggcaattg agaccgcggc gggctcgaaa aggacttttt ctggttccaa
     4621 ggagaaaacg tcgcgccacc ggtcttcgca ccgccgagcg tcagcagggc acgccggcag
     4681 cggtcgttga ggactcgaac ggccctgaac ttcgccatcg agcgggggtt tttgtgcaag
     4741 gggctcggca ttcatttcgc ttgcggctat ccagccattg ccccgcgcag tggtagacga
     4801 ggcggcgtcc aagcactcga tccgccggtg tagcgatcat cgaaacgagt tcagctcacg
     4861 aacgaacgag cgcaggctac gcacatccgc gaagttgtac ctgtgagcgt cacgagcgag
     4921 cacattggaa gcatcgggta gccaatccgc gatgcgcgat cgatcggcac atggccgatc
     4981 gacctaatgg ttcggtaggt cgtatcggcc tcggctgcag ccctgcgtca ccaccccgat
     5041 acagccgtgc ggcggcgcct gttcgttgca gctttaacag agttgatgcc ggaccgcgtc
     5101 cctcgcgagg cgcgccacaa ttcggacgat tgcggagccg gtgttcggct cctgttcaac
     5161 tctctgtcaa ttgcggcgac ggcttggctg actatatcgg ccaagcatgc gagaggcgcc
     5221 tgaagcacaa cacgacttcg tcgtcgttcc cgacgcaaac atgctcatcc acggcaaggc
     5281 tctgccggac ctgccctggg ccgaactggg ccgcgatacg attgaggtcc tttatgtgcc
     5341 gtcggtaatc cgcgaggtcg acaacctcaa ggttcaaagc ggacgaccga acaagctcgc
     5401 tcggcagctc ggcgctgatt tgcgcgcgct gcgcaagaca gccgatagaa cagccattgt
     5461 tcgggagcgc tcgccccgag tggtcaagcg gctagtggtt gatcaggtca cgagaaaatt
     5521 ccaccggcga ctgaagctcg atcatgccga tcaggcgctg atcaactact gcctgtcgct
     5581 gaaggcagcg ggccgcgacg tcctgctcct taccaacgat accatttgcg cgtcgaccgc
     5641 ggatgatgtc ggccttccgg tactgcaggt cgaagaccat tggctgcgca atccggagcc
     5701 caacgagcgt gaccgcgaga acgcgcgcct caaggaagag atacgtcgca tttcggcaag
     5761 tgagcctgag atcgagattg tcttcagcag caaggatgga gcgcgattgt ctagcctcga
     5821 ggcgcagctt acgaggtggc cggcactcac gcgagagcag gttgacgagc tgttcgcgca
     5881 agtccagcaa ggctgcccca tggcgacgtc cttcga
//
LOCUS       DASRBJ010000247         2283 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_232479,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000247 DASRBJ010000000
VERSION     DASRBJ010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232479"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(18..686)
                     /gene="purQ"
                     /locus_tag="VE968_06840"
     CDS             complement(18..686)
                     /gene="purQ"
                     /locus_tag="VE968_06840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HZU51575.1"
                     /translation="MRSAVVVFPGSNCDRDVAVALEQVTGRRPVMIWHRETELPDGTD
                     FIGLPGGFSYGDYLRSGAMAARSPIMRAVSEAASRGVPVIGICNGFQVLTESGLLPGA
                     LMRNAGLKFVCRNVALKVENSQSMFTAQYDAGETISLPVAHHDGNFQADEGTLDRLEG
                     EGRVAFRYLEECNGSARNIAGILNDAGNVLGLMPHPERVIEPAHGGTDGRRLFEGLLE
                     TVYA"
     gene            complement(683..928)
                     /gene="purS"
                     /locus_tag="VE968_06845"
     CDS             complement(683..928)
                     /gene="purS"
                     /locus_tag="VE968_06845"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017182327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HZU51576.1"
                     /translation="MKARVFITLKNGVLDPQGKAIHHALEGLGFTGVNDVRAGKMIEL
                     DLADGTSNEAIEEMCRKLLANTVIENFRIERLEVVEA"
     gene            935..1222
                     /locus_tag="VE968_06850"
     CDS             935..1222
                     /locus_tag="VE968_06850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51577.1"
                     /translation="MPAVLLQAAPRRLAQEGASFTRYLPNCRIIGHSLVNGSPALGRF
                     SMVGGIAIAMFVALVGWGGRYFGWEDPEGKVQLALITSFILGIIGGFKARS"
     gene            complement(1230..1673)
                     /locus_tag="VE968_06855"
     CDS             complement(1230..1673)
                     /locus_tag="VE968_06855"
                     /inference="COORDINATES: protein motif:HMM:NF014687.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HZU51578.1"
                     /translation="MDEPRTAKVLANQGADMRRSAKAVEQSTGQLADSADRRTQLASD
                     RTLLAAERTYAAWVRTALAALAAGIGARALVRDVLPAWVGQVSGSILIIFAAFCLVAG
                     VWRELHGVPRDPGPDMKPMPRGMLIIMNFFMLVVALAALIGIWAS"
     gene            complement(1680..>2283)
                     /locus_tag="VE968_06860"
     CDS             complement(1680..>2283)
                     /locus_tag="VE968_06860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010408660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HZU51579.1"
                     /translation="TDGITLFAVPRDLPGITIENETLVDSSKAASVTFENVELDSDAV
                     IGDLDQGWTRLNRALLAGRAAAAAELVGVAAGAFTMSLDYLKQRKQFGKFIGEFQALQ
                     HRAAHLYAEIEIARASILKAAQLLDCADERAELYVSVAKAKCADVANIAVREAVQMHG
                     GIGMTDEHDIGLFMKRQVVLGQLFGDVYFHRERVARLIGY"
BASE COUNT          451 a          702 c          660 g          470 t
ORIGIN      
        1 ccattcacga ctgccgtcta ggcgtaaact gtttcgagca gtccctcgaa caaacgtcga
       61 ccgtccgttc cgccgtgcgc cggttcaatg actctttccg ggtgcggcat cagaccgagc
      121 acattgccgg catcgttgag aattccggca atgttgcgcg cagagccgtt gcattcctcg
      181 aggtagcgga aggcaacccg gccctcgcct tcgagcctgt cgagcgttcc ttcgtcagcc
      241 tggaaattgc cgtcgtgatg agcgacgggc aaggagatcg tctcgcctgc atcatattgc
      301 gcagtgaaca tgctctggct gttctcgacc ttgagcgcca catttcggca aacgaacttc
      361 aggcccgcat tgcgcatgag tgcaccggga aggagtcctg actccgtaag cacttggaag
      421 ccgttgcaga tcccgatcac cggcacgccg cgggaagctg cttcgctaac ggcacgcatg
      481 atcggcgagc gtgctgccat tgcccctgaa cgcagataat cgccgtagga aaaaccaccc
      541 ggaagaccga taaagtcggt tccgtcggga agctctgttt cacggtgcca gatcattact
      601 ggcctacggc cggtaacctg ctccagagca acagcaacat cgcggtcgca attcgaacca
      661 ggaaaaacga cgaccgcgct cctcatgcct ccaccacctc cagccgttcg attcggaagt
      721 tttcaataac cgtgttcgcg agaagcttgc ggcacatttc ctcgatcgcc tcgttgcttg
      781 ttccgtccgc aagatcgagc tcgatcatct tgcccgcacg gacgtcattc acaccggtaa
      841 atccaagccc ctcgagcgcg tggtgaatcg ccttcccttg cgggtcgagc actccattct
      901 tgagggtgat gaagacgcgc gctttcatgt gcttatgcct gcggttttgt tgcaagccgc
      961 tcctaggcga ctagcgcaag aaggggcaag ttttacgcgc tatttaccta attgccggat
     1021 tatcggccac tcgctggtca atggttcacc ggcacttggg agattctcga tggtcggcgg
     1081 tatcgccatt gccatgttcg ttgcgctcgt cggttggggc ggcagatatt tcggttggga
     1141 agaccccgag gggaaagtcc agctggcgct gattacatcg ttcattctcg gcatcatcgg
     1201 cggcttcaag gcgcgcagct gacgcgccct taactcgccc aaatgccgat gagagcggca
     1261 agggcaacca ccagcatgaa gaaattcatg atgatgagca tcccccgtgg cattggcttc
     1321 atgtcgggac cggggtcgcg cgggacgccg tggagctctc gccacactcc agcgacgagg
     1381 cagaaagcgg cgaaaatgat gaggatggat ccgctgacct gtccgaccca cgcgggaagg
     1441 acgtctctca ccagcgccct tgcgccgatg ccggccgcga gcgccgctag cgccgttcgt
     1501 acccaagcgg cataggtccg ttcggcggca agcaacgtcc ggtcgcttgc aagttgcgta
     1561 cggcggtcgg cgctatcggc aagctgtccc gtgctttgct caacggcctt ggcgctccgc
     1621 cgcatgtcgg cgccttggtt cgcgagcact ttggctgtcc gcggctcgtc catcgttcgt
     1681 caataaccaa tcagccgggc aactcgctcc cggtgaaagt aaacgtcgcc gaacagctgc
     1741 ccaaggacga cctgccgctt catgaagagg ccgatgtcat gctcgtccgt cattccgatg
     1801 ccaccgtgca tttgtacggc ttcacgcacg gcaatattcg cgacgtccgc gcacttcgcc
     1861 ttggcgacgg agacatagag ctcggctcgt tcgtccgcgc agtcgagcaa ttgcgcagct
     1921 ttcagaatcg atgcgcgagc aatctcgatc tcggcgtaga gatgtgccgc gcgatgctga
     1981 agcgcctgga actcgccgat aaactttccg aactgctttc gctgcttgag ataatcgagg
     2041 ctcatcgtga acgcaccggc ggcaacgccg accagttcgg ccgcagcggc ggcccggcca
     2101 gctagaagag cgcgattgag ccgagtccaa ccttggtcga gatccccgat gaccgcatcg
     2161 gagtcgagtt cgacattctc gaaagtgacg cttgcagcct tcgagctgtc aaccagggtc
     2221 tcattctcga ttgtaatgcc cggaagatcg cggggaacgg cgaaaagcgt aatgccgtcg
     2281 gtt
//
LOCUS       DASRBJ010000248         5489 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_380922,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000248 DASRBJ010000000
VERSION     DASRBJ010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5489
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380922"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(13..765)
                     /locus_tag="VE968_06865"
     CDS             complement(13..765)
                     /locus_tag="VE968_06865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HZU51580.1"
                     /translation="MKVLVAVKRVIDYNVKPRVRMDGTGVDLANVKMSMNPFDEIAVE
                     EAIRLKEKGVATEIVAVSIGPAKAQETLRTALAMGADRAILVQADEEVEPLGVAKILA
                     KIAREEQAQLVILGKQAIDDDNNATGQMLAAILDWPQGTFASKVELASEDVTVTREVD
                     GGLEKLKLKLPAVVTTDLRLNEPRYASLPNIMKAKSKPLATRLPADYQVDVARRLETL
                     RVTEPAKREAGVKVASVDELVERLKGLGIAKS"
     gene            complement(844..2049)
                     /gene="sucC"
                     /locus_tag="VE968_06870"
     CDS             complement(844..2049)
                     /gene="sucC"
                     /locus_tag="VE968_06870"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HZU51581.1"
                     /translation="MNIHEYQAKELLAKYGVPVPAGHAAMSVEEAVDAAKRLPGPLWV
                     VKAQIHAGGRGKGKFKELPESAKGGVRLARSIDEVRENAAEMLGKTLVTIQTGAAGKE
                     VQRLYITDGVDIAKEFYLALLVDRETGRIAIVASTEGGMEIEKVAHDTPEKIATITID
                     PATGLMPHHGREVAAALGLSGELAKQAARLLASLYQAFLGTDASQIEINPLAVSEQGQ
                     LLVLDAKVGFDNNAEFRHKDLQELRDLTEEDPMEIEASKYDLSYIKLDGSIGCMVNGA
                     GLAMATMDIIKLEGAEPANFLDVGGGASKEKVTAAFKIILSDPAVKGILVNIFGGIMR
                     CDIIAEGIVAAARDVSLNVPLVVRLEGTNVQQGKDILASSGLPIIAANDLGDAARKIV
                     AEVKEAVPA"
     gene            2237..3319
                     /gene="dinB"
                     /locus_tag="VE968_06875"
     CDS             2237..3319
                     /gene="dinB"
                     /locus_tag="VE968_06875"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HZU51582.1"
                     /translation="MTDSARPLRKIIHVDMDAFYASVEQRDNPELQGKPLAVGGGHRG
                     VVAAASYEARAFGIRSAMPSVTAKRRCPDLIFVKPRFDVYRAVSQQIRAIFADYTDLV
                     EPLSLDEAYLDVTEDRHGLGSARAIAEDIRRRIRLETGLTASAGVSYCKFIAKLASDH
                     RKPDGLCVITPEKGPSFVASLPVARFHGIGPVTARKMEQLGIITGADLCAWSLAALQA
                     HFGSSAEWYWRICRGIDDRDVKPDRPYKSVSAERTFDEDLTDPQRLAAELERVAGYAW
                     ERARRADVMGRTVTLKVKYGDFTLVTRSKSFVGPVPDLEAFTLSGQALLAALQPLSKG
                     IRLLGLGLHNLVDSSEEKPIQLGLAI"
     gene            3482..4015
                     /locus_tag="VE968_06880"
     CDS             3482..4015
                     /locus_tag="VE968_06880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CarD family transcriptional regulator"
                     /protein_id="HZU51583.1"
                     /translation="MATKALSFDVGDYVVYPKHGVGRVVELQSTEIAGTRLDLYVLRF
                     EKEKMTLRVPVNKADSVGMRKLSSDKTMKDALETLKGKPKIKRTMWSRRAQEYEAKIN
                     SGDLTSIAEVVRDLFRPDDAPEQSYSERQIFEAASSRLARELGAMEQTDEKAALAKIL
                     DILNKAAAIHHKSKEVA"
     gene            complement(4079..4414)
                     /locus_tag="VE968_06885"
     CDS             complement(4079..4414)
                     /locus_tag="VE968_06885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007682766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family protein"
                     /protein_id="HZU51584.1"
                     /translation="MTTILLLMISNVFMTIAWYGQLKFPQLSSFAAILIGWSIAFVEY
                     CFAVPANRIGYSHGFTGGQLKIIQEVITLTVFALFAAVVLKEPIGWRYLGAFACLIGA
                     AGFMFVGRS"
     gene            4525..5253
                     /locus_tag="VE968_06890"
     CDS             4525..5253
                     /locus_tag="VE968_06890"
                     /inference="COORDINATES: protein motif:HMM:NF022441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head GIN domain-containing protein"
                     /protein_id="HZU51585.1"
                     /translation="MRKSLAFVIAGTGMLAACTNGDAESGGPTVSRNYQVGSFQEVEL
                     AGHYDVEIRTGSPISVNARGPENVLNRLRVEVDGNKLTIGPKNEGGWFHFGRRFSRET
                     VHVTVTVPTLTSATLAGSGVLNVDKVQGGSFEGTVAGSGQLNLTSVDVQSLKLNIAGS
                     GSAKAGQGKAQSAEVDIAGSGNVDAGAVHTNQVKVSIAGSGGVRANASNTATVDIMGS
                     GDVDISGGAKCTVSKAGAGNVRCS"
     gene            5300..>5489
                     /locus_tag="VE968_06895"
     CDS             5300..>5489
                     /locus_tag="VE968_06895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2807 domain-containing protein"
                     /protein_id="HZU51586.1"
                     /translation="MRTFPMVFPVIVAAMIASGADGATRNFTVTGFTNVRIEGPYKVR
                     LATGVPPSAKATGSSAALD"
BASE COUNT         1137 a         1621 c         1589 g         1142 t
ORIGIN      
        1 ggacaagtac gctcatgatt tcgcgatccc cagaccttta aggcgttcaa ccagctcgtc
       61 gacgcttgcg acctttacgc ccgcctcgcg cttggcgggc tcggtgaccc tcaatgtttc
      121 gagccggcgc gcaacgtcaa cttggtaatc agcaggcaag cgcgtcgcga gcggcttcga
      181 cttcgctttc atgatgttgg gaagggaagc gtatcgcggc tcattgaggc gaaggtcagt
      241 tgtgacaact gccggcaatt tgagtttcag tttctcaagt ccaccatcaa cctcgcgcgt
      301 aacggttaca tcctcgctgg ccagctcgac cttggaagcg aacgtcccct gcggccaatc
      361 aagaatcgcc gcaagcattt gcccagtcgc attgttgtcg tcatcgattg cctgcttgcc
      421 gaggattacc agctgcgcct gctcctcccg cgcgatcttc gccaggatct tggcaacgcc
      481 aagaggctcg acctcttcat ctgcttgaac cagaatcgca cgatctgcgc ccatggcgag
      541 cgccgttctc aatgtttcct gcgcctttgc tggaccaatc gaaacagcaa cgatttcggt
      601 cgcaacgccc ttttccttca ggcgaattgc ttcctcgaca gcaatttcgt cgaacgggtt
      661 catgctcatc ttgacgttgg cgagatcgac tcccgtgccg tccatgcgga cgcggggctt
      721 cacattatag tcgatcaccc gtttgacggc gaccagcact ttcatcgctt cactccattc
      781 gcccgcgcgc cgcaaccgga ccttgccaat gccatgagcg gccgagattt gaaccgtccg
      841 aaactaggcc ggcacggcct ccttgacttc cgccacgatc ttccttgcgg catccccgag
      901 atcgttcgcg gcaatgatcg gcaaacccga actcgcgagg atgtcctttc cctgctggac
      961 gttcgtgccc tcgagccgga ccaccagcgg cacattgagc gacacgtcac gagcagcagc
     1021 gacaatccct tcggcgatga tgtcgcatcg catgatcccg ccaaagatgt tgacgagaat
     1081 gcctttgaca gcaggatcac tgaggatgat tttgaatgcc gccgttacct tttccttgga
     1141 cgcgccgccg ccgacgtcga ggaagtttgc gggttcggca ccttcgagct tgatgatgtc
     1201 cattgtcgcc atcgcaaggc ccgcgccgtt caccatacag ccaatcgagc catcaagctt
     1261 gatgtaggac aggtcgtact tcgaggcctc gatttccatc ggatcctctt cggtaaggtc
     1321 acgaagctcc tgcaagtcct tgtgacggaa ctcggcattg ttatcgaagc caaccttggc
     1381 atcgaggact aacagctgtc cctgttcgct gacggcaagc ggattgattt cgatctgtga
     1441 tgcatcggtt ccaagaaacg cttgatagag gctcgcaaga agcctcgcgg cttgcttggc
     1501 aagctcgcca ctaagtccca gcgcggccgc aacctcgcgt ccatggtgcg gcattaatcc
     1561 ggtcgcaggg tcgatcgtga tcgtcgcgat cttttcaggg gtgtcgtgcg cgaccttctc
     1621 aatctccatc cctccttcgg ttgaagcgac aatggcgatc cgaccagttt cccggtcgac
     1681 gagaagcgct agataaaatt ctttcgcgat atcgacgcca tcggtgatgt acagccgttg
     1741 aacttccttc ccggctgcgc ccgtttggat cgtgaccagc gtcttgccga gcatttcggc
     1801 cgcgttctcg cgtacttcgt cgattgagcg cgccaggcgg acgccgccct tggcactctc
     1861 gggtaactcc ttgaatttgc cctttccgcg tccgccagcg tggatctgcg ccttaaccac
     1921 ccacagtggt ccaggcagcc ttttggcggc atcaacggct tcctcgacgc tcattgctgc
     1981 gtgccctgcg ggaacaggaa cgccatattt cgcaagcagc tctttggcct ggtattcgtg
     2041 gatattcatg gcgcggccct taagcagatt ggaacgcgta agggaaggcg agcggccgtc
     2101 gcagcgccgg taacttccat ccgccctggc gcttccagga gatgggcact tggtagatta
     2161 agagccgttc gcttagggca gcgagggaat tggacgctgg acttgcgggt gcccgtcggg
     2221 acagaaaaat cgcgctttga ccgactcagc ccgccctttg cgaaagatca tacacgtgga
     2281 catggatgct ttctatgcat ccgtcgagca gcgtgacaat ccggagcttc aaggcaaacc
     2341 tctcgcggtt ggaggcggtc atcggggtgt agtcgcagca gcaagctatg aagcacgcgc
     2401 cttcggcatt cgatcggcca tgccctccgt gactgcaaag cggcggtgtc ctgaccttat
     2461 ctttgtaaag ccgaggttcg acgtctaccg cgccgtctcg cagcaaatcc gcgcgatttt
     2521 cgccgattac accgaccttg ttgagccgct cagcctcgat gaggcctatc tcgacgtgac
     2581 ggaggaccgc cacggattgg gaagcgcacg ggcgatcgcc gaagacatta ggcgccggat
     2641 caggctcgag accggcctta cggcatcagc cggcgtgtcc tattgcaaat tcatcgcgaa
     2701 gcttgcctcg gatcatcgga agcccgatgg cctttgtgtc atcaccccgg agaagggacc
     2761 aagcttcgtc gcttcgctac cggtcgcgcg cttccacgga atcggcccgg ttacagcaag
     2821 gaagatggaa cagcttggga tcatcactgg cgcggatctt tgcgcgtgga gccttgcggc
     2881 actccaggcg cattttggaa gttctgccga atggtactgg cgaatttgcc gcgggattga
     2941 cgatcgcgac gtgaagcctg atcgaccgta taagtccgtt agtgccgagc gaaccttcga
     3001 tgaggatcta accgaccctc agcggctagc cgctgaactt gagcgagtgg cgggttacgc
     3061 ctgggagcgc gcgagacgtg ctgacgtgat gggacgaacc gtcaccctga aggtcaagta
     3121 tggcgatttc acgcttgtaa cccggtcgaa gagcttcgtc ggaccagttc cggatctcga
     3181 ggcattcacc ctttccgggc aggcgcttct tgctgctctt cagcccttat caaaaggtat
     3241 aaggctgctt ggcctcggac tccataatct ggtcgattcc tctgaggaga agccgatcca
     3301 actcggactc gcaatctgag gtaagtcatg ttataaaact gtcacatggg gccgccgcga
     3361 ttcagctgcg gccttaaatt caagggaagc cacgaaacag gctggggagc cacgaccaca
     3421 ggtcgctttg gggggcggca cgaaggtgct ggctcttttg ccgtatttgg aaaggtgagc
     3481 aatggctaca aaggcgctta gcttcgatgt tggtgattat gtcgtgtacc ccaagcatgg
     3541 cgtaggtcgc gtcgtcgagc ttcaaagcac cgagatcgcc ggcacccgtc tcgaccttta
     3601 tgttctaagg ttcgagaagg aaaagatgac gctgcgcgtt ccagtcaaca aggccgactc
     3661 ggtcggcatg cgcaagctgt cgtccgacaa gacgatgaag gatgcactcg agacactcaa
     3721 gggcaagccg aagatcaagc gcaccatgtg gtcgcggcgc gcgcaggagt atgaagcgaa
     3781 gatcaactcc ggcgacttga cctcgatcgc cgaggtcgtt cgcgacctgt tccgaccgga
     3841 tgacgcacca gagcagagct attcggagcg gcagatcttc gaggccgcgt cctcgcgcct
     3901 tgcacgcgaa cttggagcga tggaacagac ggacgaaaag gccgctctcg cgaagatcct
     3961 cgacatcctg aacaaagctg cggcaatcca ccacaagagc aaagaagtcg cctgacttta
     4021 gcaggcttgc ggtgatctag agggcgcccg ttgcgggcgc cctttttatt tggccaggtc
     4081 aactgcgccc cacgaacatg aatcctgctg caccgatgag gcaagcgaat gcgcccaaat
     4141 aacgccagcc gatcggttcc ttgagcacca ctgctgcaaa gagcgcgaag actgtcagcg
     4201 tgatgacttc ctggatgatt ttcagctgcc cgcctgtaaa cccatggctg tagccaatgc
     4261 ggttcgccgg gaccgcaaag caatattcga cgaaggcgat cgaccagccg atcagaatgg
     4321 ccgcaaaaga ggagagctgc gggaatttca gctgcccgta ccaggcgatc gtcatgaata
     4381 cattcgagat catgagtagc aggattgtcg tcatgagccg caactagtgg agcatcgacg
     4441 aagactccag acgggcgaaa ttcccgcttg cggctgctgc tgtcaaagtg tattgcgtct
     4501 ataacacacg tgcaggagga tcggatgcgt aagtccctag cgtttgtcat cgcaggtaca
     4561 ggcatgcttg ctgcctgtac gaacggtgat gccgaaagcg gcggaccaac cgtgtcccgc
     4621 aattatcagg tcggaagttt ccaggaggtc gagcttgccg gccactatga tgtcgaaatc
     4681 aggaccggct cgccgatcag cgtgaatgca cgaggtccgg aaaacgtcct caatcggcta
     4741 cgcgtcgaag tggatggcaa caagctgaca atcggaccca aaaatgaggg cggctggttt
     4801 cacttcggtc gccgcttctc ccgcgaaacc gttcacgtta ccgtgacggt gccaacactg
     4861 acgagcgcaa cgctggctgg atcgggcgtc ctcaacgtcg acaaagttca aggtggcagc
     4921 ttcgaaggca ccgttgcggg gtcaggccag ctcaatctaa cgtccgtcga cgtccaatcg
     4981 ctcaagctta acatcgccgg ttccggcagt gcgaaggcgg gccaaggaaa ggctcagtca
     5041 gccgaagtcg acatcgcagg ttccggcaat gtcgatgccg gggccgttca cacgaaccag
     5101 gtcaaagtat cgattgccgg ctcgggcggt gtgcgtgcga acgcaagcaa cacggcgacg
     5161 gtcgacatca tgggctcggg tgatgtcgac atatcaggcg gtgcaaaatg cacggtcagc
     5221 aaggccggcg cggggaacgt ccgctgctcc taggcagctc ttagcacggc gttaaccatc
     5281 agcgtggaag gtgagcgaca tgcgcacctt cccaatggtt tttcccgtca tcgtcgcggc
     5341 aatgatcgcc agcggagcgg acggcgccac ccgcaatttc acggtcacgg gctttaccaa
     5401 cgttcgcatc gaggggccgt acaaggttcg tctcgcgacc ggtgtgccgc cgtcggcgaa
     5461 ggcgaccggc tcatccgcgg cgcttgatc
//
LOCUS       DASRBJ010000249         2690 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_381097,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000249 DASRBJ010000000
VERSION     DASRBJ010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2690
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381097"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1081)
                     /locus_tag="VE968_06900"
     CDS             complement(<1..1081)
                     /locus_tag="VE968_06900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017502397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HZU51587.1"
                     /translation="MTDHVAQFINEAGTTLGAKGLITDAREIEPWLTDWRGRIHGRSR
                     AIVAPGSTDEVAAIVRLAAKHRIALVPQGGNTSMAAGATPPSDGSAILLSLRRMNRIR
                     SVNAQNRLAVAEAGVILANLHDAALEVGMRFPLSLGARGSCTIGGLASTNAGGTQVLK
                     FGTMRSLVAGVEAVLPDGSVHNGLSALKKDNRGYSIDQLLIGAEGTLGIITAVALRLV
                     PAIADRIVAWVGVESPTRALELLRFLEARTSTIEGFELVPGDALDLVLKHIPATRRPL
                     DKAHGWNVLIEATSPSPDANLGTQIEHLLGSALERGIVADAVIGRSEAEAAAFWKIRD
                     SISEAERSEGQTLAHDISVAVADMPA"
     gene            1136..1627
                     /locus_tag="VE968_06905"
     CDS             1136..1627
                     /locus_tag="VE968_06905"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HZU51588.1"
                     /translation="MEQPCITLVVARALNGVIGREGKLPWHLPADLKRFKKLTIGSVL
                     VMGRKTFESLPGLLPGRRHIVLTRDPHWNSDGAEVAHSLDEALHRARDERISVIGGAD
                     IFDLFLPFANRIELTEVVEEAAGDTTIDDPRRSGSWRESFREEHESTDGKPAFRFITL
                     ERA"
     gene            complement(1665..2315)
                     /locus_tag="VE968_06910"
     CDS             complement(1665..2315)
                     /locus_tag="VE968_06910"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017499627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_function: GO:0019205 - nucleobase-containing compound
                     kinase activity [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HZU51589.1"
                     /translation="MNIILLGPPGAGKGTQAARLQAERGMIQLSTGDMLREAVAAGTP
                     VGLKAKEVMERGELVSDAIVSALIGERLDGAADSGAIFDGFPRTKHQAEALEILLGER
                     GRKLDHVIELEVDEEALVTRITGRFTCAKCGTGYHDTFRPTKVAGVCDVCGSTQFKRR
                     PDDNEQTVRTRMEEYRAKTAPILPYYANKGLVRRVDGMANVDEVARQIAAILDGTP"
     gene            complement(2353..>2690)
                     /locus_tag="VE968_06915"
     CDS             complement(2353..>2690)
                     /locus_tag="VE968_06915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011240443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HZU51590.1"
                     /translation="QFNSEETADNLKRHGGFIPGIRPGKATEQYFDYLLNRITVVGAV
                     YLALICVIPDLAAGSAGLTNLRLGGTSLLIVVNVTMDTVSQIQSHLIAHQYGDLIKKA
                     KLKTAPRRR"
BASE COUNT          483 a          863 c          815 g          529 t
ORIGIN      
        1 aagccggcat gtccgcgacg gcgaccgaaa tgtcatgagc caatgtctgc ccctccgaac
       61 gctccgcttc cgagatcgag tcacggattt tccagaatgc cgccgcctcg gcctcgctgc
      121 gtccaataac cgcgtcggcg acgattcccc gctcgagcgc ggagccaagg aggtgttcga
      181 tttgagtgcc aaggttcgcg tcgggggacg gactcgttgc ctcgatcagc acgttccagc
      241 catgcgcctt gtcgagtggc cgccgcgtag ccggaatatg cttgaggacg agatccaagg
      301 catcaccggg gacgagctca aagccctcga tggtcgatgt tcgtgcttcg agaaagcgaa
      361 ggagctcgag cgcgcgtgtc gggctctcaa cgccgaccca ggcgacaata cgatccgcaa
      421 tcgccggcac gagccgcaag gcgaccgcag tgatgatccc gagcgttccc tcggccccaa
      481 tcagaagctg gtcgatactg tagccacgat tgtctttctt gagtgcggag agcccattgt
      541 gcaccgatcc atcgggaaga acggcttcga ctccggcgac cagtgagcgc atcgtcccga
      601 acttcagcac ctgcgttcca ccggcattgg tggacgcgag gccaccaatg gtgcagcttc
      661 cgcgcgcgcc aagactcaat gggaagcgca tgcccacctc aagcgccgcg tcgtgcaagt
      721 tcgcaaggat cacgccagcc tccgcgaccg ccaggcggtt ttgcgcgttc accgaccgga
      781 tgcggttcat ccgccggagc gaaagcaaga tcgcgctgcc gtcgcttggc ggcgttgctc
      841 ccgctgccat gctcgtgttt ccgccctgtg gaaccagcgc aatgcggtgt ttcgccgcga
      901 gcctgactat cgcggcgacc tcgtccgttg accccggcgc cacgatcgcg cgtgatcggc
      961 catggatgcg ccctcgccag tccgtcagcc acggctcgat ctcgcgagca tccgtgatca
     1021 gtcccttcgc cccaagcgtt gtcccagcct cgttgatgaa ttgcgctaca tggtcggtca
     1081 tgccgcgccc attagcgtgc ttggcaggac cgcgcgacag cggcaaaaag ccgcgatgga
     1141 acagccatgc atcacactcg tcgtcgcgcg cgcgcttaac ggggtgattg gccgtgaggg
     1201 caagcttcca tggcatctgc ccgccgatct caagaggttc aagaagctga cgatcggcag
     1261 cgtcctcgta atggggcgca agaccttcga gagtttgcct ggccttttac caggccgccg
     1321 gcacatcgtt ctgacgcgcg acccgcactg gaacagcgat ggcgcggaag tcgcccatag
     1381 cttggacgag gcactccatc gtgcccgcga tgagcgcatc tccgtcatcg gaggggccga
     1441 cattttcgac ctctttctcc cctttgccaa ccgcatcgag ctgaccgagg tcgttgagga
     1501 agcggccggc gacacgacca tcgatgatcc gcggcgatcc ggatcgtggc gcgaaagctt
     1561 ccgggaagag catgagtcga ccgacggtaa gcccgcattt cgcttcatta cgctggagcg
     1621 agcctgatat ttgcgcgtgt gccttcgtcc gctccagaaa aagctcaggg cgtgccgtcg
     1681 agaatagcgg cgatctgccg ggctacctcg tcgacgttgg ccatgccgtc gacccgtctc
     1741 accagcccct tgttggcgta gtaaggaagg atcggtgcgg tttttgcacg atattcctcc
     1801 atgcgcgtgc gcaccgtctg ctcattgtcg tccgggcgcc gcttgaactg cgttgagccg
     1861 cacacgtcgc agactcccgc aaccttcgtc gggcggaacg tgtcgtggta tccggtgccg
     1921 cacttggcgc aggtgaaccg gccagtaatg cgcgtgacga gcgcctcttc gtcgacctcc
     1981 agctcgatca catggtcgag cttgcgcccg cgttcgccaa gcagaatttc gagcgcttcg
     2041 gcttggtgct tcgtccgtgg aaagccgtcg aagatggcgc cactgtcggc tgccccatca
     2101 agccgctccc caatgagtgc gctcacaatg gcatcgctga cgagctcgcc gcgctccatg
     2161 acttccttgg ccttgagccc gacgggcgtt cctgccgcga ccgcttcacg aagcatgtca
     2221 ccggtcgata actgaatcat gccgcgctcc gcttggagcc gagcggcttg agtacccttg
     2281 cccgcgcctg gcgggcccaa caggatgatg ttcagcattt cggcgctctc tccctgttcg
     2341 ccgactggga cgctagcgcc ggcgtggcgc cgtcttgagt ttggccttct tgatcaggtc
     2401 accatattgg tgagcgatga gatggctctg aatttggctc acagtgtcca ttgtgacgtt
     2461 gacgacgatg aggaggctgg tgccgccaag gcgcaggttc gtaagcccgg cagaacccgc
     2521 agcaaggtcg ggaattacgc agatgagcgc aagataaacc gcgccgacaa ccgttatccg
     2581 gttgagaagg taatcgaaat attgctccgt cgccttccct ggtcgaatgc caggaatgaa
     2641 gccgccgtgg cgctttagat tgtcggctgt ttcctcgctg ttgaactgca
//
LOCUS       DASRBJ010000250         6736 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_175769,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000250 DASRBJ010000000
VERSION     DASRBJ010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6736
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175769"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..674)
                     /gene="tsaD"
                     /locus_tag="VE968_06920"
     CDS             complement(<1..674)
                     /gene="tsaD"
                     /locus_tag="VE968_06920"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007713124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HZU51591.1"
                     /translation="MTVILGLESSCDDTAAALVSDQRVILAEAVVGQNNAHQPYGGVV
                     PEIAARAHVEILPALIGKVLGEAKMSIQEVDAIAATAGPGLIGGVMVALLAGKGLALA
                     ARKPLLAINHLEGHALSPRLADPTLCFPYLLLLVSGGHCQIVEVHAAGEYRRLATTID
                     DAAGEAFDKAAKLLRLPYPGGPSLERLAETGDPGLVPLPRPLVGSKEPHFSFAGLKSA
                     VQRAVE"
     gene            728..1639
                     /gene="hemC"
                     /locus_tag="VE968_06925"
     CDS             728..1639
                     /gene="hemC"
                     /locus_tag="VE968_06925"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HZU51592.1"
                     /translation="MQGLRLGTRGSPLALAQARKVAAAIETAQRWPEGWVQIVEITTT
                     GDKVQDRPLAELGGKGLWTKELDRALLENAVDFCVHSMKDVESVRPAEIHIAAVRPRG
                     DVRDRLIGADSVEKLKEGARVGTSSPRRAAQMRRLRPDLEIVPIRGNVETRLRKVETG
                     EVDATLLSAAGLKRLDINVGTAIPTEVILPAPAQAVIGMECRTNDTRTQSVLTSVNNQ
                     ITYNCVMAERAFTRELGATCHSPVAAFCAFEDGDLRLRGQLFSEDGRDLIEDRITFEC
                     GQSEAPEKLARRLLERAPQSIRKLFVT"
     gene            1641..2297
                     /locus_tag="VE968_06930"
     CDS             1641..2297
                     /locus_tag="VE968_06930"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HZU51593.1"
                     /translation="MTHVLVLRPEPGAGITADKARKLGMRPLVAPLFQIEAVEWQAPD
                     AANFDGVLLTSANAIRCAGEQLSSYRGLKAYAVGEATAESARHAGFDIASTGESGVER
                     LLASIEPDLKLLHLAGEDRHAAPAARQAITTVAVYRSIEITDPKLRPNPGDVAMIHSP
                     RAGRRFAELVRDRTPIGVAAISEAAAAAAGAGWMKVEIAEKPNDEALLALAARLCKNA
                     "
     gene            2356..3108
                     /locus_tag="VE968_06935"
     CDS             2356..3108
                     /locus_tag="VE968_06935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51594.1"
                     /translation="MLILVGAAGAVWGLGHYRSAARLLGVAPAAAPPSPTATVPPARA
                     TGSTSLMAASTAEPDKQRIDLLEQRISKVENATERAEGYAGRADGLVIAFAARRAIDR
                     GVALGYLENLLSQRFGAQHQAAVATIITESRSPVRLNDLIDEYEALGPDLRHGGPNDS
                     WWASFRRELGTLAEVHRVDQPPANAEARYARALQRLETGDVDQALAETMRLPGAVSAQ
                     AWTQKARRYVAAHRALDEIESAALMPQSPTMS"
     gene            3203..4285
                     /locus_tag="VE968_06940"
     CDS             3203..4285
                     /locus_tag="VE968_06940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HZU51595.1"
                     /translation="MRAALALTTVAGLMACAGAYPQSSERISRSAPPETRPTAPGYLQ
                     QRISELGQSFDGCVGIAVISIDSGWTIGWKADEFYPQQSVSKLWVSVTVLDKVDKGKI
                     ALDQPVTLGRDDLTLFHQPIAQEILAGPVETTVRDLLVRAITTSDNTANDKLMWIAGG
                     PPAVRAMIKEKHLGAIRFYNGERALQSRIAGLAWNPAYSIGNAFFDARDALPARVRKA
                     AFDRYVANPYDGAAPTAIVRALARLKRGEILSSYSTQFLLDTMSRTHTGPNRLKGGLA
                     PGWLLNHKTGTGQVLGELQAGYNDVGILTAPDGRSYGVAVMIKVTSAPLPVRMGLMNN
                     VVRAVITAHDIEYPGASGPTIRTVGR"
     gene            4537..5391
                     /locus_tag="VE968_06945"
     CDS             4537..5391
                     /locus_tag="VE968_06945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51596.1"
                     /translation="MLFRYCFGALLIGVAAVSASAQDAQSLIRKNLEARGGAPAFAAL
                     KNVTFEGRTIYPGDFELQYKETRQRLGRGYADRVDFGVQGLDIIQAYDGREGWKVNPL
                     QGRKDPEKMSADEVRELEDSALIEGPLLASRYDGSNVAYLGRDDFDGTLAYKLKVTQK
                     DGDEFVYWLDPDTFLEIKVDETRRIRGAQQTTETELGDYEKIAGVYFPMSIESWPQGQ
                     DNSRSRTLIASGAANSEVPANFFSEPGMTVPEAKAVPSNPPDQGKPKGKPSGRKPSEQ
                     TTPSGKGE"
     gene            5398..>6736
                     /locus_tag="VE968_06950"
     CDS             5398..>6736
                     /locus_tag="VE968_06950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017668385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase"
                     /protein_id="HZU51597.1"
                     /translation="MPRMMLFATAAAIVAAPVFAEAPVPADSAVISGIGVRNIGSAKM
                     SGRISAVAGRHEKDGKLTLLVGSASGGVWMSEDSGTTFKPVFDKQPVQSIGAVAFDPT
                     NPKTLWVGTGESWTRNSVSVGNGIYKSVDGGETWTHMGLPSTERIARILVNPKNGNVV
                     YVCAPGPLWADSPDRGLYKTADGGKTWALILKGANLSTGCSTVAMDPLNPDHLFAGTW
                     DFRRKPYGFRSGGNGPDAPSGSRFAESHDGGRTWAYLDARNRKGLPPQPWGRLEIAFA
                     PSNAKRVYAFIENVRPALFVSDDAGATWHERDRSQGMVWRPFYFGRMIVDPKDADRVF
                     KMGFNAIVSDDAGKSFLSTTDATHPDWHDLWIDPDNSKYMFGGSDGGLWYSYDGGNRW
                     WMAQNLPVSQFYHVSTDDRDPYQVYGGLQDNSAWVGDQEYPGGITNDRWENLNG"
BASE COUNT         1395 a         1988 c         2087 g         1266 t
ORIGIN      
        1 tgttcaaccg cgcgctggac ggcgcttttc agtccggcga atgaaaaatg cggctctttt
       61 gaaccaacaa gaggtcgcgg cagcggcaca agccccggat cgccggtttc agccaatcgc
      121 tccagtgacg ggccgcccgg atagggaagt cgcagcagct ttgcagcctt gtcgaatgcc
      181 tcgccggcag catcatcaat ggtcgtcgcc agccgccggt attcccccgc cgcgtgaacc
      241 tcgacgatct ggcaatgacc gcccgataca agcaggagaa ggtaggggaa gcacaaggtc
      301 ggatcggcaa gccttggcga aagagcgtgc ccttcaaggt gattgatggc gaggagcggc
      361 ttccttgcag cgagcgcgag gcccttgccg gcgagcagtg cgaccatcac gccaccgatc
      421 agacccggcc cagccgttgc tgcaatggcg tcaacttctt gaatagacat tttggcttcg
      481 ccaagcacct ttccgataag tgccggcagg atctcgacat gagcgcgtgc cgcgatctcc
      541 ggcactacgc cgccataagg ctgatgcgca ttgttctgcc cgaccacggc ctcggcgaga
      601 atgactcgtt ggtcgctcac caatgctgcc gcagtgtcat cgcagctgct ttcaagtcca
      661 aggatcactg tcatttcgcg accggccctt tgccttaacc cgtcgcattg cactagaggt
      721 accagccatg cagggactaa ggctcgggac tcgcggctcg ccgctcgcgc tcgctcaggc
      781 acgcaaggtc gcggcagcga ttgagacggc acagcgctgg cccgaaggct gggtccagat
      841 cgttgaaatc acgaccaccg gtgacaaggt gcaggacagg cctctcgccg aactcggcgg
      901 caaggggctt tggacaaagg aactggatcg cgcgctcttg gagaacgcgg tcgacttttg
      961 tgtccactca atgaaggacg ttgaaagcgt ccggccggca gaaattcaca ttgcggctgt
     1021 gcgccccagg ggtgacgtcc gagacaggct gatcggcgcc gattcggtcg agaagctgaa
     1081 ggagggagcg cgtgtcggca catcgtcgcc acgacgagct gcgcagatgc gacggctgcg
     1141 accggacctc gagatcgttc cgatcagggg taatgtcgag actcggctac gcaaggtgga
     1201 aacgggcgaa gtggacgcga cgctgctcag tgccgctggc ttgaagcggc tcgacataaa
     1261 tgtcggaacc gccattccaa cggaagtcat tcttccggcg ccggcacagg ctgtgatcgg
     1321 gatggagtgc cgcaccaatg acacgcggac gcaaagcgtg ctgacgtccg tgaacaacca
     1381 gatcacctac aattgcgtca tggcagagcg agcgtttaca cgcgaacttg gcgccacctg
     1441 ccattcaccg gtggcggcat tttgcgcgtt cgaagatggc gacctgagat tgcgcgggca
     1501 attgtttagt gaagacggcc gcgacctcat tgaagatcga atcacctttg aatgcggcca
     1561 aagcgaagcg cctgaaaagc ttgcacggcg attgctcgaa cgtgcgccgc agtcgattcg
     1621 gaagctattc gtcacctgaa atgacccatg ttctcgtcct gcgtccggag ccgggggccg
     1681 gcatcacggc tgataaggcg cgtaagctcg gcatgaggcc tttggtcgcg cctctcttcc
     1741 aaatcgaagc ggtcgaatgg caagcacctg atgcggcaaa cttcgatggc gtgctcctga
     1801 cgagcgccaa cgcgatccgt tgtgccgggg aacaattgtc gagctaccgt ggcctcaagg
     1861 cctatgcggt tggcgaagcg accgcggaat cggctcgtca tgccggcttc gacatagcat
     1921 cgacgggcga atcgggtgtg gagcgattgc ttgcatcaat cgaacccgac ctcaagctgc
     1981 ttcaccttgc cggcgaagat cgccacgcgg ctccggcggc gcgccaggca attacgacgg
     2041 ttgccgtcta ccggtcgata gaaatcactg atccgaagct ccgaccaaac cccggtgacg
     2101 tcgcgatgat tcactcgccg cgcgccggcc ggcgttttgc cgagctagtg cgcgatcgca
     2161 cgccaatcgg tgttgcggcg atcagcgagg ctgccgccgc tgcggccggc gcgggctgga
     2221 tgaaggttga gatcgcggaa aaaccgaacg acgaggctct tctggctctc gcggcacggc
     2281 tgtgtaagaa cgcgtaacct gatgaacgga tcgcgaagca gcatgggttg gagcgcgcga
     2341 ctgtctatcg cactggtgct catcttagtg ggtgccgctg gagcggtgtg ggggctgggc
     2401 cactatcgca gtgcggctcg cttacttgga gttgcgcccg ctgcggcacc cccgtcacca
     2461 accgccacgg tccccccggc gcgcgcgact ggttcgacca gcctaatggc cgcttctacg
     2521 gccgaaccag acaagcagcg gatcgacctc ttggagcagc gcatctcgaa ggttgagaat
     2581 gcgacagagc gcgccgaggg ctatgcgggc cgtgcggacg ggctcgtcat cgcgttcgcc
     2641 gcacgacgcg caatcgatcg cggcgtcgcg cttggctacc tcgagaattt actaagccag
     2701 cgcttcggcg cacagcatca agcggcggtt gcgacaatca taacggagtc acgcagtccc
     2761 gtaaggctca atgatctcat cgatgaatat gaggctctcg gacccgatct caggcatggc
     2821 ggacccaatg atagctggtg ggcgagcttc cggcgggagc ttggcacact cgccgaggtg
     2881 catcgggtcg accagccgcc ggcgaacgcc gaggcccgtt acgcgcgcgc ccttcagcgc
     2941 ctcgaaactg gcgacgtgga ccaggcgctt gcggaaacga tgcgactgcc aggagcggta
     3001 agcgcacaag cctggacgca gaaggcgcga agatatgtgg cggcacatcg tgcactcgat
     3061 gaaatcgaat ccgctgcatt gatgcctcaa tcgccaacga tgagttgaga ttgcgcagcg
     3121 gtgatccagc gtctgtttgg gatgtctcga tgaatttcgt gctttggaag aaatcgacgg
     3181 catggcgtca cacttggctt tgatgagagc cgcgcttgcg ctcaccacgg tggctggcct
     3241 catggcatgc gccggagcct atcctcagtc atcagaacgt atcagccgat cggctcctcc
     3301 ggagaccagg ccgaccgcac ccggctacct gcagcagcgg ataagcgaac tcggacaatc
     3361 cttcgacggt tgtgtcggta ttgcggtaat ctcgatcgat agtgggtgga cgatcgggtg
     3421 gaaggccgac gagttctacc ctcagcagag cgtaagcaag ctctgggtat cggtcactgt
     3481 gctcgacaag gtcgacaagg gtaagatcgc gctcgatcaa ccggtgacgc tcggccgtga
     3541 cgatctcacg ctcttccatc aaccgattgc ccaggagatc cttgccgggc ccgttgagac
     3601 gaccgttcgt gatctgctgg ttcgagcaat cacgacgagc gacaacacag ctaatgacaa
     3661 gttgatgtgg attgccgggg gcccacctgc ggtccgcgcc atgatcaaag agaagcacct
     3721 cggtgccatc cgcttctaca atggtgaacg cgcgttgcag agccgcatcg cggggttggc
     3781 gtggaaccct gcctattcga tcggaaacgc gttcttcgat gctcgtgatg ccttgccggc
     3841 gcgcgtacgc aaggccgcat tcgaccgcta tgtcgccaat ccctatgacg gtgctgcacc
     3901 gaccgctatc gttcgcgcgc tggcgcggct caaacgtggc gaaatcctgt ccagctactc
     3961 cactcaattc ctgctcgaca cgatgagccg aacgcacacc ggtcccaacc ggctgaaggg
     4021 cggcctggcc ccgggatggt tgctcaatca caagaccggg acagggcaag tacttggcga
     4081 gctccaggcg ggttacaacg atgttggcat tctgacggca ccggacggca ggagctatgg
     4141 cgtcgccgtt atgatcaagg tgacttccgc tcccttgccc gttcggatgg gcttgatgaa
     4201 caatgtcgtt cgggcagtaa tcaccgcgca cgacatcgaa tatcctggcg cctccggacc
     4261 gacgatacgc accgtgggtc gttgatggat accgagcgtt tcggtggagc cgccttgaac
     4321 cgctaatggc ttccgcagca cactccggcg tcgccgcgaa gaaaaaaaat ggaaaacaaa
     4381 gtcgatcttg caggtcctcc gtccgccgat tcagtcgatt gattcggcgt ttctccccac
     4441 caacgcgtga gtagcttcga cgaacgtcgg accactctac ttgattgatg atcatggcag
     4501 ttccatcctc gaggctccat ttgggggcgg gcggccatgc tatttcgtta ctgcttcggc
     4561 gcacttctga tcggcgtcgc ggccgtttcg gcatcggcgc aggacgcgca gagccttatc
     4621 cggaaaaacc ttgaggcgcg tgggggcgct cccgccttcg cggccctcaa gaacgtgacc
     4681 ttcgaaggcc gcacgattta tcccggcgac ttcgaactcc aatataagga gacgcgacaa
     4741 agactcggac gcggctacgc cgatcgcgtc gacttcggtg tccaaggcct cgatatcatc
     4801 caagcctatg atggtcggga gggctggaag gtaaatccgc tgcagggccg caaggacccc
     4861 gagaaaatgt ctgccgacga agtacgcgag ctcgaggaca gcgcgttaat tgagggcccg
     4921 ctactcgcat cgcggtacga cggaagcaat gttgcttacc ttggtcgcga cgatttcgac
     4981 ggaacgctcg cttacaaatt gaaggtcact cagaaagacg gtgacgaatt cgtctattgg
     5041 ctcgatccag acacgttcct cgagatcaaa gtcgatgaga cgaggcgaat tcgcggggcg
     5101 caacagacga cagagaccga actcggcgac tacgagaaga tcgcgggcgt ctactttccg
     5161 atgtcgatcg agagttggcc gcaagggcag gacaattccc gctcgcggac cttgattgca
     5221 agcggcgctg ccaattcaga agttccagcg aacttcttct ccgaaccggg aatgactgta
     5281 ccggaagcca aagctgttcc ttcgaacccc ccggatcagg gtaaacccaa ggggaagcca
     5341 agcggccgta agccgagcga gcagacgacg ccctccggaa aaggggagta aacgccaatg
     5401 ccgcgaatga tgttgttcgc cacggcggca gcaatagttg ccgcccccgt gttcgctgaa
     5461 gctccggtgc ctgccgacag cgctgttatc tcgggtatcg gcgtgcgcaa tatcggctct
     5521 gcaaagatgt cgggacgaat ttcggccgtc gccggccgcc acgagaaaga cgggaagttg
     5581 acgctcctag tgggctccgc ttccggcggt gtgtggatgt ccgaggacag cggtacgacg
     5641 ttcaaacccg tgttcgacaa gcagccggtt caatcaattg gcgcagttgc ttttgatccc
     5701 acaaacccaa agaccctgtg ggtcggtacc ggtgaaagct ggactcggaa ttcggtctcg
     5761 gtggggaatg gtatctacaa gtcggttgat ggcggcgaga cgtggaccca catgggccta
     5821 ccttcgacgg agcggatagc gcgcatcctc gtgaatccga agaacggcaa tgttgtctat
     5881 gtctgcgcgc caggcccgct ttgggccgac tctcccgatc gggggctcta caagaccgcc
     5941 gatggaggca aaacttgggc gctgatcctc aaaggcgcca acctgtcgac gggatgctcg
     6001 acggtcgcaa tggacccgtt gaaccccgat catctgttcg ccggcacttg ggatttccgt
     6061 cgcaagccct atggattccg ttcgggtggc aatggtccgg atgccccgtc gggcagccgc
     6121 ttcgctgaga gtcacgacgg gggccgcaca tgggcttacc tcgacgcgcg caaccgcaag
     6181 ggtcttccgc cacagccgtg gggccggctc gagatcgcgt tcgccccgtc gaacgccaaa
     6241 agggtatacg ccttcattga gaacgtgcgt cccgctctct ttgtctcgga cgacgccggc
     6301 gcgacgtggc acgaacggga ccgcagccaa ggtatggtgt ggcgaccttt ctattttggt
     6361 cggatgattg tcgatccaaa ggacgcggat cgcgtgttca agatgggatt caatgccatc
     6421 gtttcggatg atgctggaaa gagcttctta agcacaaccg atgctacgca ccccgactgg
     6481 cacgatctgt ggatcgatcc cgacaatagc aaatacatgt tcggaggaag cgacggcggc
     6541 ctctggtaca gctatgatgg aggaaaccgg tggtggatgg ctcagaactt acccgtcagc
     6601 cagttctatc acgtcagcac cgacgaccgc gatccttatc aagtttacgg cggattgcag
     6661 gacaatagcg cgtgggtagg cgatcaggaa tatccaggcg gaatcacgaa cgaccgctgg
     6721 gaaaatctga atggcg
//
LOCUS       DASRBJ010000251         2922 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_490242,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000251 DASRBJ010000000
VERSION     DASRBJ010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2922
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490242"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..126)
                     /locus_tag="VE968_06955"
     CDS             complement(<1..126)
                     /locus_tag="VE968_06955"
                     /inference="COORDINATES: protein motif:HMM:NF013765.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51598.1"
                     /translation="MARADAPTPMMAQYRRLKEEAADALLFYRMGDFFELFFEDAK"
     gene            295..2604
                     /locus_tag="VE968_06960"
     CDS             295..2604
                     /locus_tag="VE968_06960"
                     /EC_number="1.1.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019367686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004470 - malic enzyme activity [Evidence
                     IEA];
                     GO_function: GO:0004471 - malate dehydrogenase
                     (decarboxylating) (NAD+) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HZU51599.1"
                     /translation="MAESHIKYTDSEALDFHTRGRPGKLEIIASKPMATQRDLSLAYS
                     PGVAVPVRAIADDPGCAYDFTTKGNLVAVISNGTAILGLGNLGALASKPVMEGKAVLF
                     KRFADVDAIDIEVKTEDAQRFIDAVELLEPSFGGINLEDIAAPDCFIIEQTLRERMNI
                     PVFHDDQHGTAIITAAGLINACYLTKRKLSEIKVVVNGAGAAAIACTELVKAMGVRGD
                     NVLMCDRKGVITKDRTDLDQWKSAHAVDTDKRTLAEALEGADVFLGLSAAGALKPDMV
                     RKMASEPIIFAMANPDPEIWPPDAMEARPDAIIATGRSDFPNQVNNVLGFPFIFRGAL
                     DVRATAINDEMKIAAAEALAELAREPVPEEVAAAYGGRAHSFGRDYIIPAPFDPRLME
                     VVASAVAEAAVQSGVAQKPIANIEAYRQQLRARLNPTVSVMSLAYENARQNPKRVLFA
                     EGEEPNVLRAAIAFKEGGYGTPVLVGREDVYNQLKEIGVENPHDYEVLNSRNSPLVGR
                     AVDYIYSRHQRHGMLRREVERLVNQDRNYFAAAMLALGEADAMITGTTRPFSQSLKQV
                     RLVIDDEPGATPFGITVVVSRNHTILIADTAVTERPTAEQYAAIAMRSSAFARRMGLE
                     PRLAFISYTTFGNPPGVHVETLRGAVSILDGFKADFEYEGEMAPDVALNYDMQKRYYP
                     FSRLSGPANILVMPGLQSASISAKLLRELGGESVMGPYVLGLEHPVQIAPMTASASDL
                     MMLAVLAGGDAHARSQRLAARAARSARQS"
     gene            complement(2582..>2922)
                     /locus_tag="VE968_06965"
     CDS             complement(2582..>2922)
                     /locus_tag="VE968_06965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HZU51600.1"
                     /translation="RREDEEIEVHVIGCDTLASGIDADWLDLAWGEGSDGGAARLAVI
                     LRDIPGALGTMSSILGQKHANIINLQLVHRDGSFQTFHLDIEVHDLAHLHAIIAALRD
                     AEPVSSVERI"
BASE COUNT          618 a          869 c          867 g          568 t
ORIGIN      
        1 cttcgcgtct tcaaaaaaca actcgaagaa gtcgcccatg cgatagaaga gcagcgcgtc
       61 ggccgcctct tccttgaggc ggcggtactg cgccatcatc ggtgtcggag cgtcggcgcg
      121 ggccattcac gagccgtagc ggctcaagtg cgcttgcaga acttcttttc ggtttgaacg
      181 aatgcaaaaa gtcgtgctgg gcgcttaacc atggacctcg ttcatgatcc agcttgtcgc
      241 gggttcgcat gacagggtga ctcgaccgac cggtctccgc taagcacgcc cgccatggcg
      301 gaatcccaca tcaaatatac cgactctgag gccctcgact tccacactcg tggacgccct
      361 gggaaactcg agattatcgc atcaaagccg atggcgacac aacgggactt aagcctcgct
      421 tattcgcccg gagtcgcggt tccggtccgt gccatcgccg acgatccggg atgcgcctat
      481 gatttcacaa ccaagggcaa tcttgttgcg gtaatttcca atggaacggc aatccttggg
      541 ctcggcaacc tcggcgcgct tgcctccaag cccgtgatgg aaggcaaggc agtcctgttc
      601 aagcgttttg ccgatgtcga cgcgatcgat attgaggtca agaccgagga cgcgcaacgt
      661 ttcatcgacg ctgttgaact gctcgaacca agtttcgggg gaatcaacct cgaagacatc
      721 gcggcacccg actgtttcat catcgagcaa acactgcgcg agaggatgaa tatcccggtc
      781 ttccacgacg accagcacgg gaccgcaatc atcactgccg ccgggctgat caacgcttgc
      841 tatctcacca agcgcaaact ctcggaaatc aaggtggtgg tgaacggcgc tggcgccgct
      901 gcaatcgcct gcaccgaact cgtcaaggcg atgggcgtcc ggggtgacaa cgtactgatg
      961 tgcgaccgca aaggcgtcat cacaaaggac cggacggacc ttgatcagtg gaagtctgcc
     1021 catgcggtcg acacggacaa gcgaacgctc gcggaagcat tggaaggagc ggacgttttc
     1081 ctcggacttt cggccgctgg agctttgaag ccagacatgg tccgcaaaat ggcgagtgag
     1141 ccgataattt ttgccatggc caatcccgac ccggagattt ggccgccaga cgcaatggag
     1201 gcgcgtccgg acgccattat tgccacgggc cgctcggact ttccgaatca ggtcaataat
     1261 gtgcttggct tccccttcat tttccgcggc gctctcgatg tacgcgcgac ggcaatcaac
     1321 gacgaaatga agatcgcggc ggcagaagcg ctggcggaac tcgcgcgtga accagtcccc
     1381 gaggaagtcg ccgccgctta tggtggtcgc gcgcacagct tcggacgcga ttacatcatc
     1441 cctgcgccgt tcgaccctcg gctgatggag gtggttgcct ccgcagtagc ggaagcagcg
     1501 gtgcagagtg gagtggctca aaagccgatt gccaatatcg aagcctatcg acagcaactg
     1561 cgcgcccgat tgaacccgac ggtgtcggtc atgagcctcg cttacgagaa tgcgcgtcaa
     1621 aatcctaagc gcgtgctttt tgcggaaggc gaggagccaa atgtccttcg cgcggcgatc
     1681 gctttcaagg agggtggata cggaacgccc gtgctcgtcg gccgcgaaga cgtgtacaat
     1741 caactgaaag aaataggcgt cgagaacccg catgattacg aggtgctcaa cagccgtaac
     1801 tcaccgctag tcggtcgagc cgtcgattat atttattcaa gacaccagcg gcatggcatg
     1861 ctgcgtcgcg aggtcgagcg gctcgtcaac caggaccgta actatttcgc ggcggcgatg
     1921 cttgcgcttg gcgaagcgga cgcaatgatc acgggcacta cgcgcccatt cagccagtcc
     1981 ttgaagcagg tccgacttgt catcgatgat gagcccggtg caacgccgtt cggaatcacg
     2041 gtcgtggtta gtcgcaatca caccattctc atcgccgaca ccgccgtgac ggagcgcccc
     2101 actgccgaac aatatgccgc gattgcgatg cgatcatcgg cgttcgcacg gagaatggga
     2161 cttgagccgc gattagcgtt catcagctac acgacgttcg gcaacccacc cggagtgcac
     2221 gtcgaaaccc ttcggggcgc ggtttctatt ctcgacgggt tcaaagccga cttcgaatat
     2281 gagggcgaaa tggcgcccga cgttgcgctc aactatgaca tgcagaagcg ctactatccc
     2341 ttcagccgcc tcagcgggcc agcgaatatc ctcgtgatgc cgggtcttca gtcggcgagc
     2401 atttcagcaa agctgctgcg cgagctcggt ggcgaaagtg tcatgggccc ctatgttctt
     2461 gggcttgagc atccggtgca aatagcgccg atgactgcaa gcgcgtcgga cctcatgatg
     2521 ctcgcggtgc ttgctggcgg tgacgcgcat gcacgctcgc agcgcctcgc ggcgcgcgcg
     2581 gctagatccg ctcgacagag ctgacaggct ctgcgtcgcg caatgcggcg atgatcgcgt
     2641 ggaggtgggc caagtcgtgc acttcgatgt cgaggtgaaa cgtctggaag ctaccgtcgc
     2701 ggtgaaccag ctgaagattg atgatgttcg cgtgtttctg tccaaggata ctggacatcg
     2761 tcccgagcgc cccaggaata tcgcgcagga tcaccgcgag ccgggcagca ccgccgtctg
     2821 agccttcacc ccaggcgaga tcgagccaat cggcatcgat cccgcttgcc agcgtgtcgc
     2881 agccgatgac gtgaacttcg atctcttcat cctcgcggcg ga
//
LOCUS       DASRBJ010000252         4960 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_698452,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000252 DASRBJ010000000
VERSION     DASRBJ010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4960
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_698452"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..341
                     /locus_tag="VE968_06970"
     CDS             <1..341
                     /locus_tag="VE968_06970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HZU51601.1"
                     /translation="GIEERVHYIDGGQLDQLAADTTGMVCVNSTSATLALAAGRPVCT
                     LGEAIYNVPGLTFDRHLDEFWTDPVPPEPGLYGAFRRVLVDRCLVRGGLASETAVKTL
                     IQSMLERLGC"
     gene            complement(338..1495)
                     /locus_tag="VE968_06975"
     CDS             complement(338..1495)
                     /locus_tag="VE968_06975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HZU51602.1"
                     /translation="MADDAPILLDVTRLIWRRWKGRLPTGIDRVALAYLDHFAPRSQA
                     VVQHQRLRRILDVKASQQLFALLQAPRHSFKRDLVTGLITNATRYGAKGQDRIYLNVG
                     HTGLDSPGFQTWIDQNNVRPIYLVHDLIPISHPQFARANENIRHRNRMRTALLTGTGI
                     IANSRSTLHELEQFAASEALELPATLVAWLGVDQLPGRSRGRPPTKPTFVTIGTIEGR
                     KNHALLLNVWDRMVTRLHDAAPRLLIIGQRGWEAEKVFDRLDADATLNGHVFELGTCS
                     DDELAQHLGSARALLFPSFAEGYGLPLVEALASGVPVIASDLPVFRELCGNIPTYLAP
                     DDESAWEGMICDYANFDSGPRQTQLTRLKAYAAPSWAEHFRSVEQWLARLG"
     gene            complement(1676..1927)
                     /locus_tag="VE968_06980"
     CDS             complement(1676..1927)
                     /locus_tag="VE968_06980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin"
                     /protein_id="HZU51603.1"
                     /translation="MPQRTATIYRMKLPTHECPYGLLAKRMLEDAGFEVEDCLLTSRE
                     QVDEFKEEHGVSTTPLIFIDGEEIGGSEQLAAYLERVPH"
     gene            2025..3179
                     /locus_tag="VE968_06985"
     CDS             2025..3179
                     /locus_tag="VE968_06985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase"
                     /protein_id="HZU51604.1"
                     /translation="MNPLYEQMKTSVFERMSLAATRAGAVNLGQGFPDFGWPDAILDA
                     AAQALKQGSNQYAPSRGLPSLREAIANHYQRHFGLELTAAHVCVTSGATEALGAAILA
                     TIEPGDEVIILAPAYDSYAPMIRRGGGVPIEVALSPPSWRVERDKLEGAVTNRTRAII
                     INNPHNPTGKLFTRSDLEPVASVAEDRDLIVISDEVWEHVVLDERRFTPIATLPGMER
                     RSIKIGSAGKIFSLTGWKVGWIVAPPELTDILARAHQFLTFSTPPNLQAAVAFGLAEG
                     DPWLAPMRERFARSRDRLASGLLRSGYAVLNAEATYFLCVDLKASEIAVEDERFAEAA
                     VNRAGVAVIPLSAFSEKHSITHLVRLCFGKKDETIDAGIAAMAKAKEFFA"
     gene            3176..4642
                     /locus_tag="VE968_06990"
     CDS             3176..4642
                     /locus_tag="VE968_06990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003052760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HZU51605.1"
                     /translation="MTPAEEASHILELAGIETKAGRLISYSPIDGKPIGHVTTGDPDL
                     AAERATAAFDHWRRVPPPRRGELVRLLGERLREAKPHLAKLVTIESGKIYQEALGEVQ
                     EMIDICDFAVGLSRQLYGLTIASERPSHRMMEQWHPLGPVAIISAFNFPVAVWAWNAA
                     LALVCGNPVIWKPSEKTPLTAELVMMLVRRAADRFGLVADGLVQLVQGERDIGEALVD
                     DQRIALVSATGSTAMGRSVGPRVAKRFGRVLLELGGNNATIVAPSADLELAARAILFS
                     AAGTAGQRCTTLRRLIVHESIAEMFVARVRQLFARVKIGDPRDSDTLIGPLIDERAYD
                     AMKSVLGDKIERVDAVPGGYYVRPALVQLDAQDGSVLEETFAPILYVLRYQGIEEAIA
                     LNNAVPQGLSSSIFTNDLREAELFMSAAGSDCGIANVNIGTSGAEIGGAFGGEKETGG
                     GRESGSDSWRAYMRRQTNTINFGSELPLAQGIKFDVAP"
     gene            4688..>4960
                     /locus_tag="VE968_06995"
     CDS             4688..>4960
                     /locus_tag="VE968_06995"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003821131.1"
                     /note="catalyzes the formation of
                     2-dehydro-3-deoxy-D-octonate 8-phosphate from
                     phosphoenolpyruvate and D-arabinose 5-phosphate in LPS
                     biosynthesis; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HZU51606.1"
                     /translation="MSSTVTIENGITFSNDRPFILIGGMNVIEDEATVMATAHAFVET
                     TRELGIPYVFKASFDKANRSSIHSFRGPGMDKGLEILAAVKQRFGVP"
BASE COUNT         1012 a         1446 c         1491 g         1011 t
ORIGIN      
        1 tggggatcga ggagcgggtg cattacatcg atggcggcca actcgatcaa ctcgcggccg
       61 atacgacggg aatggtctgc gtcaacagta cgtcggcaac gctcgcgctc gcagctgggc
      121 gaccagtctg tactcttggt gaagccatct acaacgttcc gggtttgacg ttcgaccggc
      181 atctcgacga attctggacg gacccggtcc caccggagcc cggactctat ggtgcgtttc
      241 gtcgagtgct ggttgatcgt tgtctcgtaa ggggagggct cgcgagcgaa acagcagtga
      301 agaccctcat ccagtcaatg cttgagcgac ttggctgtta gccaagtcgt gccagccatt
      361 gttctactga acggaaatgc tctgcccagc taggcgcggc ataagccttg agccgtgtta
      421 attgcgtttg tcgcggccca ctgtcgaaat tcgcataatc gcagatcatc ccttcccaag
      481 cggactcgtc atccggagcg agataggtcg ggatgtttcc acagagctcg cgaaagaccg
      541 gcaagtcgct cgcaattacc ggaactcccg aagcaagggc ctcgacgagt ggaaggccat
      601 agccttccgc aaaacttgga aacagcagag cacgggctga cccaagatgc tgcgcgagtt
      661 cgtcgtccga acacgttccc agctcgaaga catgcccgtt aagcgtcgca tcggcgtcaa
      721 gccgatcaaa caccttttcc gcctcccagc ctctctggcc aatgatcaag aggcgaggag
      781 ccgcgtcgtg caaccgcgtg accattcgat cccacacatt caggagtaaa gcgtggttct
      841 ttcgaccttc gattgtcccg atggtgacaa atgttggctt ggtcggcggc cgaccacgac
      901 ttcgtcccgg cagctgatca acaccgagcc aggcgacgag ggtagcgggc aattcaagag
      961 cttctgatgc cgcaaattgt tcaagctcgt ggagcgtcga acgactgttc gcaattattc
     1021 ccgtacccgt cagaagtgca gtccgcatcc ggttccggtg gcggatgttt tcgttcgcgc
     1081 gagcgaactg cggatgcgag attgggataa gatcgtggac gaggtaaatc gggcgaacgt
     1141 tgttttggtc gatccaggtt tgaaaacccg gtgagtcaag gcccgtgtgg ccgacgttga
     1201 ggtagattcg atcctgaccc ttcgcaccgt agcgggtcgc atttgtgatt agacccgtca
     1261 ccaagtcacg tttgaacgag tgtcgcggcg cctggagtag cgcgaacagt tgctgggacg
     1321 ccttcacgtc gagaattcgc ctcaaacgct gatgctggac gacagcctgc gatcgcggag
     1381 cgaaatgatc caaataggcg agcgcaactc ggtcgatgcc agtaggcagg cgacctttcc
     1441 agcgacgcca gataagccgt gtcacgtcga gaaggattgg tgcgtcgtca gccaagagct
     1501 gtattcgatc gggcgctttg cttcatcggt cgagtgccaa tcacaagaag cgcgcaagag
     1561 gtcaactcaa gggcacgtcc atcggcgaga ggatctgtcc gttgtgcgcg cgcgagcgca
     1621 agcaggtgca gtcattttct accggcgggt gccgatcctc tctcgctttc acgctttagt
     1681 gcggaactct ctccagatag gccgctagct gctcacttcc gccgatctct tcaccgtcga
     1741 tgaaaatgag cggcgttgtg gaaacgccat gctcctcttt gaactcgtcg acctgctcgc
     1801 ggctcgtgag aaggcagtcc tcgacttcaa aacccgcatc ttcgagcatg cgcttcgcta
     1861 gcagcccata ggggcattcg tgggttggaa gcttcattcg ataaatggtc gcggtacgct
     1921 gcggcattgg tgtctctttc ataattgccg cactgcaatg cgtgcgggca ccagaaggtt
     1981 gcgtcactcg cgatgaacag atcttggggc tatgcgacct tccgatgaat ccactttacg
     2041 aacagatgaa gacgagcgtc ttcgaacgta tgtcgcttgc ggcgacgcga gcaggcgcag
     2101 tcaacctggg gcagggcttt ccggacttcg gctggcccga cgcgatcctc gacgccgcgg
     2161 cacaagcact aaagcaggga tcaaaccaat atgctccctc gcgtgggctt ccctcgctcc
     2221 gtgaggcgat cgctaaccat tatcagcgcc atttcgggct ggagctaacg gcagcccacg
     2281 tgtgcgtgac gagcggcgcg accgaagctc tcggtgccgc gatcctagca acgatcgagc
     2341 ccggcgacga agtcatcatc cttgcacctg cctatgacag ttacgcgccg atgatccgcc
     2401 ggggcggggg agttccgatc gaggttgcac ttagcccgcc gtcgtggcgt gtcgaacgtg
     2461 acaagctcga aggtgctgtg acaaacagga cgcgcgcgat catcatcaac aatccgcaca
     2521 atccgacagg caagctcttc acgaggtccg atctcgagcc agtcgcgtcg gtcgccgaag
     2581 atcgtgacct aatcgtgata agcgacgagg tctgggagca tgtggtgctc gacgagcgcc
     2641 gtttcactcc aatcgccacg ctcccgggaa tggaacgccg gtcgatcaag atcggctcgg
     2701 caggcaagat cttctcgctt accgggtgga aagtcggctg gatcgtggct cctccagaac
     2761 tcaccgatat actcgcacgc gcccaccagt tcctcacctt ctcaacgccg cccaatctgc
     2821 aggcagcggt ggcctttggc ctcgcagagg gtgatccttg gctagcgcca atgcgggagc
     2881 gttttgcacg gtctcgtgac cgactggcga gtggtttgct gcgctcaggg tatgcagtgc
     2941 tcaatgctga agctacttac ttcctctgtg ttgatctcaa ggcttccgaa attgcggttg
     3001 aggacgagcg gtttgccgaa gcagcggtca atcgcgcggg cgttgccgtg atccctctgt
     3061 ccgccttttc ggaaaagcat agcatcacgc atctcgtgcg cctctgtttt gggaagaagg
     3121 acgaaaccat cgatgctggc atcgccgcga tggcgaaagc gaaggagttt tttgcgtgac
     3181 gcccgctgaa gaagccagcc atatcctcga gcttgccggc attgaaacga aggccgggag
     3241 gctcatcagt tattcgccga tcgacgggaa accgatcggt cacgtgacga ccggtgaccc
     3301 ggatctcgcc gccgagcgcg ccaccgcagc gttcgatcat tggcgccggg ttccgccacc
     3361 gcgccgcggc gagctcgtga ggctccttgg cgagcgtctt cgcgaagcaa agccgcatct
     3421 tgcaaagctt gtcacgattg aatccgggaa aatttaccag gaggcgctcg gcgaggtaca
     3481 ggagatgatc gacatctgcg atttcgctgt cggtctctca cgacaattgt atgggctgac
     3541 catcgcgagc gagcgcccaa gccatcgcat gatggagcag tggcatcctc tggggccagt
     3601 cgccatcatc agcgcattca acttcccggt cgctgtttgg gcatggaatg cggcgctcgc
     3661 acttgtctgc ggcaaccccg tcatctggaa gccaagcgag aagactccgc ttactgccga
     3721 gctcgtcatg atgctcgttc gccgggcggc tgaccgcttt gggctggtcg ccgatgggct
     3781 cgtgcaactg gtgcagggag agcgcgacat cggtgaagcg ctcgtcgacg accagaggat
     3841 agcgcttgtc tcggcaacgg gttcgacggc gatgggtcgt tcggttggac cacgcgttgc
     3901 aaagcgcttc ggccgggtcc tcctggagct tggcggcaat aacgcgacca tcgttgcgcc
     3961 gagcgctgac ctcgagcttg ccgcccgggc gattctgttt tcggccgcgg gcacggccgg
     4021 tcagcgatgc acgacccttc gccgattgat tgttcacgaa agtattgccg aaatgttcgt
     4081 cgcgcgcgtc cgccagctgt tcgcacgcgt gaagatcggc gacccgcgtg actccgatac
     4141 actgatcggg ccgctcatcg atgagcgcgc gtatgatgcg atgaagtcgg tcctcggcga
     4201 caagatcgag cgcgtcgatg ctgtccccgg cggttattat gtgcgacccg cactcgttca
     4261 actggatgca caggacggga gtgtccttga agagacgttt gcaccgatcc tctacgtgct
     4321 ccgctatcag gggatcgagg aagcaatcgc cctcaacaat gccgttcccc aaggcctttc
     4381 gtcgtcgatc ttcaccaatg atcttcgcga agcggagctt ttcatgtcgg cggcgggttc
     4441 ggattgcgga attgcgaacg tcaacatcgg aacatcaggt gccgagatcg gcggcgcgtt
     4501 cggcggcgaa aaagagaccg gcggcggacg cgagagcggt tcagacagct ggcgggccta
     4561 catgcgtcgg cagacgaaca cgatcaactt cggctcagag cttcccctcg cccaaggcat
     4621 aaagttcgac gttgcgccct agaagatccg atcgcccgat gaacagcaaa gagcagggaa
     4681 gaaagccttg tcatcaacag taacgatcga gaacggcatt accttctcga atgaccgtcc
     4741 gttcatcctc atcggcggaa tgaacgtcat tgaagacgag gcaacggtga tggcgaccgc
     4801 gcatgcgttc gttgaaacca cgcgcgagct tggcattccg tatgtcttca aagcaagctt
     4861 cgacaaagcc aaccgctcgt cgatccattc cttccgggga cccggaatgg acaagggcct
     4921 cgaaatactg gcagccgtca agcagcgctt tggagttccg
//
LOCUS       DASRBJ010000253         2749 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_490524,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000253 DASRBJ010000000
VERSION     DASRBJ010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2749
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490524"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..631
                     /locus_tag="VE968_07000"
     CDS             <1..631
                     /locus_tag="VE968_07000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxypeptidase family protein"
                     /protein_id="HZU51607.1"
                     /translation="KLTDEDDPVARVLRTECTFHVVPNMNPDGSRRGHLRTNAVGVNL
                     NREWHAPSPEKSPEVLCVRNAMDDTPPDFAMDVHGDEAIPANFLAGFEGIPSLTDRQQ
                     QLFNLFSETLERLSPDFQRQQGYEIPAPGQANMSMSTTQLAERYGCVSMTLEMPFKDN
                     FDLPDAVYGWSPQRSKYLAYACIDALHAILPRLKDAKSQRTKTKHTEAA"
     gene            631..1317
                     /gene="gpmA"
                     /locus_tag="VE968_07005"
     CDS             631..1317
                     /gene="gpmA"
                     /locus_tag="VE968_07005"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003042166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004619 - phosphoglycerate mutase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HZU51608.1"
                     /translation="MPTLVLLRHGQSQWNLENRFTGWWDVDLSAQGIEEARLAGAKLR
                     EKGFDFDCCFTSVLTRAIRTLDLVLHELERLWLPVTKDWHLNERHYGALTGLNKQEMV
                     EKVGAEQVKIWRRSYDVPPPPLELGSRYDVSQDRRYREVDVPRTESLKDTITRAVPYY
                     EREIATALKSGKRVLVAAHGNSLRAIVKYLSNISDDDILSLEIPTGKPIVYDLSTDLS
                     VEARYYLDDA"
     gene            complement(1347..1934)
                     /locus_tag="VE968_07010"
     CDS             complement(1347..1934)
                     /locus_tag="VE968_07010"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HZU51609.1"
                     /translation="MSDQLTDVVDVDDHDRLIREISQLRGKVARLQERVEQLDQLAHQ
                     DSLINLPNRRGFMRELERLIARVDRYGLKAAMLFVDVDGLKIINDTFGHRAGDEALIQ
                     VANLLSKGVRHSDVVARIGGDEFGILLECADEDAAQETAARLIEQISACEFLHDGEPL
                     PLGVAIGVGMIDCLDTPESVMERADEAMYRRKAAA"
     gene            2114..2596
                     /gene="purE"
                     /locus_tag="VE968_07015"
     CDS             2114..2596
                     /gene="purE"
                     /locus_tag="VE968_07015"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HZU51610.1"
                     /translation="MTKSVVGIIMGSNSDWKTMRHTAETLDELAIPHERKIVSAHRTP
                     RRLYDYAHSAKERGLKVVIAGAGGAAHLPGMAASMTSVPVLGVPIESQSLKGMDSLLS
                     IVQMPAGVPVGTLAIGKAGAINAALLAASMLANYDEALARRLDAWRDAQTRSVAESPE
                     "
     gene            2593..>2749
                     /locus_tag="VE968_07020"
     CDS             2593..>2749
                     /locus_tag="VE968_07020"
                     /EC_number="4.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007677460.1"
                     /note="With PurE catalyzes the conversion of
                     aminoimidazole ribonucleotide to carboxyaminoimidazole
                     ribonucleotide in the de novo purine nucleotide
                     biosynthetic pathway; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HZU51611.1"
                     /translation="MIPPGSSIGILGGGQLGRMLSIAAAQLGYRSHIFGPDEYPCAAD
                     VAADFTRA"
BASE COUNT          571 a          865 c          760 g          553 t
ORIGIN      
        1 aaagctcacg gacgaggatg atcctgttgc gcgggttctc agaacggaat gcacgttcca
       61 cgtcgttccc aacatgaacc ccgatggatc gcgccgggga catctgcgaa cgaacgcggt
      121 gggcgtcaat ctaaaccgtg aatggcatgc tccttctccg gaaaagagcc cggaagtgct
      181 ctgtgtgcgt aacgcaatgg acgacacgcc ccccgatttt gcgatggacg ttcacggcga
      241 cgaggccatt ccggcaaact tcctcgcagg tttcgaaggc ataccttcgc tgacggaccg
      301 gcagcagcag ctgttcaatc ttttcagcga gactctcgag cgcctttcgc ccgatttcca
      361 acggcaacag ggttatgaaa ttcccgcgcc cgggcaggcc aacatgtcca tgtcgacgac
      421 gcagctcgcc gagcgttacg gctgtgtctc gatgaccttg gaaatgccct tcaaggataa
      481 tttcgacttg ccggatgcgg tctatggctg gtcaccgcag cgatcgaaat acctcgccta
      541 tgcctgcatt gatgcccttc acgccattct gccaaggctc aaggacgcaa agtcgcagcg
      601 caccaagacg aagcataccg aggctgcgta atgccgactt tggtgttgct gcggcacgga
      661 caatcgcagt ggaatctcga gaaccgcttc accggctggt gggacgtcga cctctcggct
      721 caaggcatcg aggaagcacg ccttgcaggc gccaagttgc gcgaaaaggg attcgacttc
      781 gactgttgtt tcacaagcgt gctcacccgg gctattcgaa ccctcgatct cgtcctccac
      841 gagcttgagc gtttgtggct tccagttacc aaggactggc atctcaacga gcgccattac
      901 ggcgcactca ctggtcttaa taagcaagag atggtcgaga aagttggcgc cgaacaagtt
      961 aagatctggc gccgttcgta cgacgtccct ccgccgccgc tcgagctcgg aagccgctac
     1021 gacgtcagcc aagaccgccg gtatcgcgag gtcgacgtac cccggactga gagcctcaag
     1081 gacacgatca cgcgcgccgt tccctattac gaacgcgaga tcgccacagc actcaagagc
     1141 ggtaagcgcg tgctcgttgc cgcccatggc aattcgcttc gagcgatcgt caaatatctc
     1201 tcgaacatca gcgatgatga catcttgagc ctcgagattc ctactggcaa accgatcgtc
     1261 tacgaccttt cgacggacct ttccgtcgag gcacgctact atctcgacga cgcgtgacgg
     1321 attagccgcc gcgtcaccta acttatctag gccgccgcct tccgccgata catcgcctcg
     1381 tctgcccgtt ccatgacact ttcgggcgtg tcgagacaat cgatcatccc gacgccaatc
     1441 gccacaccga gcggtagcgg ttcgccatcg tgcaggaact cacaggctga aatctgctca
     1501 atcagccgag cggccgtttc ttgcgcggcg tcctcatccg cgcactcgag gaggatccca
     1561 aattcgtcac ctccaatgcg agcgacaacg tcgctgtgtc gaaccccctt cgaaagcaga
     1621 ttcgcaacct ggatcagcgc ctcgtcaccg gctcggtggc cgaacgtgtc attgatgatc
     1681 ttcaagccgt ccacgtcgac aaacagcatc gccgccttga ggccgtagcg gtcgactcga
     1741 gcgatcagcc gctcgagctc acgcatgaat cctcgccgat tcggcaagtt gatcagcgaa
     1801 tcctggtgtg cgagctggtc gagctgctcc acgcgctcct gcaagcgcgc aactttccct
     1861 ctcaattggc tgatttcccg aatcagccga tcatgatcgt cgacgtcgac gacgtcggtt
     1921 agttgatcag acattgcccc tgagccctcg ctcttgtctg ttccctttcc atagcgcgat
     1981 tctacagccc tgaaaatgct cgttttccga cgcatgcgag tcacaaccaa tttcgcgccg
     2041 caaagctccg attgcgtagc ccgaatagca cacctaaacg agccgctttc tacgactgga
     2101 tcaaggcggg acgatgacaa agtcggttgt cggcatcatc atgggcagta attccgactg
     2161 gaaaacgatg cgccacaccg ccgaaacact cgacgagctc gcaatcccgc atgagcgcaa
     2221 gatcgtatcg gcacatcgaa ctccccgccg gctgtatgat tatgcacatt cggccaagga
     2281 acgcgggctg aaagttgtca ttgcgggcgc cgggggtgcc gcgcacctgc cgggaatggc
     2341 ggcatcgatg acctcggttc cagtgctcgg cgtgccgatt gagagccagt cactgaaggg
     2401 gatggatagt ctcctgtcga tcgtgcagat gccagccggg gttccggtgg gcacgcttgc
     2461 aatcggcaag gcgggtgcaa taaacgcggc gcttcttgca gcatcgatgc tcgcaaatta
     2521 cgacgaggcc ctggcgcgac ggctcgacgc ctggcgcgac gcgcagacgc gctcggttgc
     2581 cgaatcgccc gaatgatacc acctggatcg agcatcggca ttctcggcgg cggtcagctc
     2641 gggcgcatgc tttcaatcgc cgcagcccag cttggctatc gctcccatat ctttggcccg
     2701 gacgagtacc catgtgctgc cgatgtggcc gcggatttca ctcgggccg
//
LOCUS       DASRBJ010000254         7901 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_541056,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000254 DASRBJ010000000
VERSION     DASRBJ010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7901
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_541056"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1183)
                     /locus_tag="VE968_07025"
     CDS             complement(<1..1183)
                     /locus_tag="VE968_07025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HZU51612.1"
                     /translation="MADPDISSVIETPFDAALSERYLVYALSTITARSLPDVRDGLKP
                     VHRRLLWAMRLLRLDPAGAYKKSARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYP
                     LVDGQGNFGNIDGDNAAAYRYTEARLTAVAIQLMAGLDEGTVDFRPTYNGEEEEPEVF
                     PGLFPNLLANGASGIAVGMATSIPPHNVAELIDAAVHLVDNPKAEDRTLMDFVAGPDF
                     PTGGVLVDSRESIAEAYATGRGSFRLRARVEVEREKGGGWHLLVSEIPYGVPKAKLIE
                     QIAQLIADKKLPILADVKDESDEQVRLILEPRARTVDPDLLLESLYRLTDLEVRFPLN
                     LNVLDASRTPGVMSLKQALAAWLAFQIEVLVRRSQVRVGKIDDRTELLDGFLVAYLNL
                     DR"
     gene            complement(1324..2292)
                     /locus_tag="VE968_07030"
     CDS             complement(1324..2292)
                     /locus_tag="VE968_07030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HZU51613.1"
                     /translation="MRRLPPLAAIRAFEAAARAENFTAAAAELGMTQAAVSYQVKSLE
                     ERLGSPLFVREKGRARLTPLGQRLLPALSSAFDSIEAAFASHREEDESLLTITTTHTF
                     ANTWLAWRLGAFQMAHPDLAVRMTTSNEVCDLRGGDADVAIRAGNGGWEGLDEIRLFE
                     SAFTPMTSPDWLLEVERKIGRKLQPQDVPQEKRINPTDEWWQQWFSDNGVPTDDALLR
                     QAGIRLENQANEGHAAMAGLGFALLTPLLWKGDVAAGRLSVPFPDRVSTRGWAYWLAY
                     PRERRMVPKVKRFREWLVAEMRKAIDELDGGWASSGRVPAAFRQVG"
     gene            2493..2681
                     /locus_tag="VE968_07035"
     CDS             2493..2681
                     /locus_tag="VE968_07035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51614.1"
                     /translation="MAYGLSTRAFIEHGPAEQLAKVTSARSTARSWHALTDARRLELI
                     EQALSAANDRIDGFPIAL"
     gene            2709..2885
                     /locus_tag="VE968_07040"
     CDS             2709..2885
                     /locus_tag="VE968_07040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51615.1"
                     /translation="MVDDLFDRDYQAGRRALNAEIANFIARLGAAAANAFNVLNRIEY
                     SEPWAASSKGTRFN"
     gene            2975..3754
                     /gene="purC"
                     /locus_tag="VE968_07045"
     CDS             2975..3754
                     /gene="purC"
                     /locus_tag="VE968_07045"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011950954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HZU51616.1"
                     /translation="MARRRQIYEGKAKILYEGPEPGTLIQYFKDDATAFNAQKRGTIS
                     GKGVINNRISEHIFTSLAAIGVPTHFIRRLNMREQLIRQVEIIPIEVVVRNVAAGSLS
                     KRLGIEEGTQLPRTIIEYYYKDDALGDPMIADEHIACFGWATQDEMNDIADMAIRVND
                     FLSGMFAAIGIRVIDFKLEFGRVWEGDYARVILADEISPDGCRLWDIKTNQKLDKDRF
                     RQDLGGVEEAYQEVARRLGLLQPEDESAVLDFDHHRKKRGR"
     gene            3882..6044
                     /locus_tag="VE968_07050"
     CDS             3882..6044
                     /locus_tag="VE968_07050"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HZU51617.1"
                     /translation="MRRARVVTINAALGPLDYRVPDGLCVEPGSIVVAPVGPRQLLGV
                     AWEAERLPTSEVADARLRPLATLLDAPAVPAPLRRLCEWAADYYLAPLGAVLRMVLPS
                     SAALDGPRQLTEYRPTGIPPTRSTAQREKALRAIVGRQGTIRELARHAEVSDAVLRGL
                     VAAGTLEPVTVDGDRPLALPDPDHASPDLNPEQQLAASSLSSAIGKGFDPVLLDGVTG
                     SGKTEVYFEAIAQCLREGKQALVMLPEIALTEPFLKRFETRFGCQPVAWHSDLRSSQR
                     RRAWRGIASGEAAVTVGARSSLFLPYPNLGLIIVDEAHEPSFKQEEGVLYHARDAAVM
                     RAKFEDIPVILATATPPIESKHMVEIGRYREVSLPMRFAGASLPDISAIDLTQDVPPR
                     GRWLAPRLVHELHQNLERGEQSLLFLNRRGFAPLTLCRHCGHRFQCPNCTAWMVEHRL
                     MHRLACHHCGHVMPPPNACPECGEEDSLVACGPGVERIADEVADLFPDARTALVTSDT
                     MWSPLRAAEFVGAMEAGAIDIVIGTQLITKGYHFPNLTLVGVVDADLGLAGGDLRAAE
                     RSFQQIQQVAGRAGRGDKPGRVFVQTHDPEAQVIAALVNGDIAGFYAAETDARREAAM
                     PPFGRLAAMIVSAEDAGEAEAVARKIGRAAPDVEGMAVFGPAPAPLAMLRGRHRQRLL
                     VHARRSLDVQDVIRDWLASLDWSSRVRVSVDVDPYSFL"
     gene            complement(6149..7060)
                     /locus_tag="VE968_07055"
     CDS             complement(6149..7060)
                     /locus_tag="VE968_07055"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CAAX endopeptidase family protein"
                     /protein_id="HZU51618.1"
                     /translation="MTRRFGFRLATEGSWRDFLDFPLVALAIAVALFIGASEIGQALA
                     SLISLPTQAGQTWLTNALVLGVILTTYKVAIVRLGAFPRDDLTYSGAVVNVGAGILIG
                     FLLMAASVGIAAISHVYHLLGEGDSSELIHELVTTGVMTAFTEEIVFRGILFRWLEEL
                     GGTWVALIMSSALFGMAHVFNANATWFASLAVAIEGGFLLGGAYMLTRNLWLPIGIHA
                     AWNVTQGEVFGVPVSGGPVHGLVRARLAGPPLLSGGGFGLEASLIALVIAAAVGACFV
                     WLAIRRGEIVRPAWVRGSEPADELGQS"
     gene            complement(7124..>7901)
                     /locus_tag="VE968_07060"
     CDS             complement(7124..>7901)
                     /locus_tag="VE968_07060"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008065786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HZU51619.1"
                     /translation="DEAPRLSELALAVGYAPHHFQRIFKRDLGVSPAEYARGLRSRRT
                     EQALKANERVTDAVYEAGYSGPSSFYTDAKERLGMTPSAWRDGGRGETIRWTHFDSPL
                     GKMFIAATSKGICRLTFDDDEQSLKRLFPNATIIEDKGGLKELVEGALAAIQQPLRMP
                     DLPIDVAGTAFQEAVWRELRRIPPGETRSYAQIAAAVGHPKAVRAVGSANGDNHVCVL
                     IPCHRVIRSDGSLGGYGGGIDRKKKLLEAEGIAAESPRLI"
BASE COUNT         1587 a         2443 c         2338 g         1533 t
ORIGIN      
        1 cccggtcgag gttgaggtag gcaacaagga agccatcgag caattccgtg cgatcgtcga
       61 tcttgccgac acgaacttgg ctccgtcgga cgagaacctc gatctggaag gcgagccagg
      121 cggcaagcgc ctgcttaagg ctcatgactc ccggggttct gcttgcgtca agaacattga
      181 gattgagcgg gaaccggacc tcgagatccg ttaggcgata gaggctctca agcagcaggt
      241 cggggtcgac cgttcgtgcg cgaggttcaa ggatcaggcg cacctgttcg tcgctctcgt
      301 ccttcacatc cgcaaggatc ggcaacttct tatcggcgat cagttgtgca atctgctcga
      361 tcagcttggc cttcggaaca ccgtacggga tttcgctgac gaggagatgc catccgcccc
      421 ctttctcgcg ctccacttca acgcgcgcgc gaagtcggaa ggagcctcta ccggttgcat
      481 aggcctcggc aatcgattct cggctgtcga ccagcacgcc gcccgtcggg aaatcgggtc
      541 cggcgacaaa gtccatgagg gtgcgatcct cggccttcgg attatcgaca agatggaccg
      601 cagcatcgat caactcggcg acattatgcg gtggaatcga cgtcgccatg ccgaccgcaa
      661 ttccgcttgc accgttcgcc agcagattgg ggaaaagccc gggaaagacc tccggttctt
      721 cttcctcgcc attataggtc ggacgaaaat caaccgtgcc ttcatcgagg ccagccatca
      781 gctggatcgc aaccgcggtc agacgagctt ccgtatagcg ataggccgca gcattatcgc
      841 cgtcgatgtt gccgaaattg ccctgaccgt cgacgagtgg gtatcgcagt gcaaagtcct
      901 gagcgagccg taccattgcg tcatagaccg actgatcgcc atgcggatga tacttgccga
      961 tgacatcgcc gaccactcgc gcggacttct tataggcacc ggcgggatcg agcctcagga
     1021 gacgcattgc ccacaagagc cggcgatgca ccggtttcaa tccgtcgcga acatccggaa
     1081 gcgagcgcgc cgtgatggtt gacagtgcgt agacaaggta gcgttcggaa agtgcagcat
     1141 cgaacggtgt ttcgatgacg ctcgaaatgt cgggatcagc cattcgtcgt cgctaccaag
     1201 ggctgatctc gaccgccagc cgttcgagca ggtgccgcgc gttttctgtt caccaacgat
     1261 gtaggggcct ttctaaaccg atagcgatcg ccgccgtcgc caatggagac gcgcggcggc
     1321 ggatcagcct acctgccgga atgccgccgg aacgcgcccg gaacttgccc aaccgccgtc
     1381 gagctcgtcg attgcctttc gcatctcggc gacgagccac tcacggaacc tcttgacctt
     1441 gggcaccatg cgacgctcgc gcggataagc gagccaatag gcccagccac gggtcgatac
     1501 ccggtctggg aagggaacag acaagcggcc cgcggcaacg tcgcccttcc agagcaaggg
     1561 tgtcagcagg gcaaagccga gtccagccat tgccgcatgg ccctcgtttg cttggttctc
     1621 gaggcgaatg ccagcttgcc gcaacagcgc gtcgtcggtc gggacgccat tgtcgctgaa
     1681 ccactgctgc caccattcgt cggtcggatt gatccttttt tcctgcggga cgtcctgcgg
     1741 ctggagtttt cggccgatct tccgctcaac ctcgagcaac caatccgggc tcgtcattgg
     1801 cgtaaacgcc gattcgaaga gccgaatttc atcaagccct tcccagccgc cgttcccggc
     1861 acggatcgca acgtccgcat cgccgccgcg gaggtcacac acctcattgc ttgttgtcat
     1921 cctcacggcg aggtcgggat gtgccatctg gaatgcgcca aggcgccagg cgagccaggt
     1981 attcgcaaaa gtgtgcgtcg tcgtgatcgt gagaagtgat tcgtcttctt cgcgatggct
     2041 cgcaaaagct gcctcgatcg aatcgaaggc actggacaat gccggcaata atcgctgccc
     2101 aagcggcgtc aggcgcgccc ttcctttttc ccgcacgaac aagggcgagc cgagccgttc
     2161 ctcaaggctc ttcacctgat aagatacggc tgcctgggtc atcccaagct cggctgctgc
     2221 agcagtgaaa ttctcggcgc gagcagccgc ttcgaatgct cgaatcgctg ccaagggcgg
     2281 aagtcgccgc attagctcac ctttctgtcg cgatccccgt cgaaatgcca ctatgacagg
     2341 tgagttgata agcccatctt atcgccgccg cgaagcgttt gattggcgga acgaatgcag
     2401 aatatctaac tgcaaatcaa gtcgccggtg ggacaattgc tcccctcgac agcccgccca
     2461 ccggcgacca ctagcaggaa aggagagttg ccatggctta tggccttagc acccgtgcgt
     2521 tcatcgaaca tggtccagcc gagcaactcg cgaaagtgac ctcggcgcgt tcgacggcac
     2581 gttcgtggca cgcgctcacc gatgcgcgtc gcctcgagct gatcgagcaa gcactgagcg
     2641 ctgccaatga ccgtatcgat ggatttccga tcgccctttg atcctttgga gcaaggaagg
     2701 aattgaccat ggtcgacgat ttgtttgacc gcgactacca ggcaggccgc cgtgccctga
     2761 acgcggaaat tgcgaacttt atcgcgcgcc ttggcgcggc cgcagcaaac gccttcaacg
     2821 tgctgaatcg gatcgaatat tcagaaccgt gggctgcaag ttcgaagggc acgcggttta
     2881 actgaatgct taagagcagg gcggactagc acgtgccgcc ctcctcgctt atagcgcccg
     2941 ctccttctca atgtccgttg gagtgacgcg aaccgtggct cgccgccgcc agatctacga
     3001 gggcaaggcc aagatccttt acgagggtcc cgagcccgga acgctcatcc agtatttcaa
     3061 ggatgatgcg accgctttca atgcgcagaa gcgcggcacg atcagcggca agggggtaat
     3121 caacaatcgc atctcggagc atatcttcac atcgctcgcg gcaatcggtg tccccaccca
     3181 cttcatccgt cgcctcaata tgcgcgagca gctgatccgg caggtggaaa tcatcccgat
     3241 tgaagttgtt gtgagaaacg tcgcagcggg ctcactgtcg aagcgactgg gcatcgaaga
     3301 aggcacgcag ctcccacgaa cgatcatcga atattattac aaggacgacg ctcttggcga
     3361 tccaatgatc gccgatgagc atattgcttg ctttggttgg gcaacacagg acgagatgaa
     3421 cgacatcgcg gacatggcaa ttcgcgtgaa cgattttctg tccgggatgt tcgctgcgat
     3481 cggcattcga gtcatcgatt tcaagctcga gttcgggcgc gtctgggagg gcgattacgc
     3541 gcgcgtaatt ctcgccgacg agatcagccc cgacggctgc cggctgtggg acatcaagac
     3601 caaccagaag ctcgacaagg atcggttccg ccaggatctc ggtggagtgg aggaggctta
     3661 tcaggaggtg gcgcgacgcc ttggcctcct tcagccggag gatgagtccg cggtgctgga
     3721 ctttgatcac caccgaaaga agcgtggtcg ttagcctttt cccccgtcag ttctcttcac
     3781 ttgtcgttcg ctcgtccgtt acaggcccgc tcgcgtgagt cggtggcaat ccgacggcag
     3841 cggttgcctt tcgcccaaac agactcgatc tagcgcgcac catgcgccgt gcccgtgtcg
     3901 tcaccatcaa tgctgcactt gggccgctcg attaccgtgt tcccgatggg ctttgcgtcg
     3961 aaccaggttc gatcgtcgtt gcaccagtcg gtccacgaca attgctgggt gtcgcatggg
     4021 aagctgagcg acttcctacg agcgaagtcg ccgacgcaag gctgcggcct cttgcaacgc
     4081 tgctcgatgc tccggccgtc cccgcgccgc tccggaggct ctgcgagtgg gctgcggatt
     4141 actacctcgc tccactcggc gccgtgctgc ggatggttct cccatcgtca gcggcgctcg
     4201 atgggccgcg ccagctgacc gaatatcggc caacgggaat tcctccaacg cgttcgaccg
     4261 cccagcgcga aaaggcgctg cgcgcaatcg ttggtcgtca ggggacgatc cgcgagcttg
     4321 cgcgccatgc cgaggtcagc gatgctgttc ttcgcggact agtcgctgcc ggcacgctgg
     4381 agccagttac tgtcgatggc gaccggccgc tcgctcttcc ggaccctgac catgcttcac
     4441 cggacctcaa tcccgagcaa caacttgctg catcaagcct ctcttcggcg attggaaagg
     4501 ggtttgatcc ggtccttctc gacggcgtca ctggctcggg aaagacggag gtctattttg
     4561 aagcgattgc gcagtgccta cgcgaaggca aacaggcctt agtcatgctg cccgaaatcg
     4621 cactgacgga gccgtttctc aaacgcttcg aaacgcgctt tggctgtcag ccggttgcat
     4681 ggcactcaga tcttcgctca tcgcagcgcc gaagggcctg gcgtggcatc gcgagcggcg
     4741 aggcagccgt gacggtcggc gcacgttcct cgctctttct cccctacccg aacctcggtc
     4801 tcatcattgt cgatgaagcg catgaaccct cgttcaagca ggaagaaggc gtcctttatc
     4861 acgcgcgcga cgcggccgtg atgcgcgcca agttcgagga cataccggta atacttgcga
     4921 cggcgacgcc tcccatcgag agcaagcaca tggtggaaat cggccggtat cgcgaggtca
     4981 gcctaccgat gcgctttgct ggagcgtcac ttcccgacat cagcgccatt gatcttacgc
     5041 aggatgttcc gccgaggggc cggtggcttg cgccgcggct cgtgcacgag cttcaccaaa
     5101 atctcgagcg cggcgaacaa tcgcttctgt tcctcaaccg aaggggcttt gcgcctctca
     5161 ccttgtgccg tcactgcggc caccgcttcc aatgcccaaa ctgtacggcc tggatggtcg
     5221 agcaccgcct catgcaccgc ctcgcttgcc accattgcgg ccatgtcatg cccccgccga
     5281 acgcctgtcc cgagtgcggc gaagaagata gccttgttgc ctgcggaccc ggcgtcgagc
     5341 gcatcgcgga tgaggttgcc gatctcttcc ccgatgcgcg aacggcgctt gtcacctccg
     5401 acaccatgtg gtcgcccctt cgcgcggcgg aattcgtggg tgcaatggaa gccggagcaa
     5461 ttgacatcgt cattggcacg cagctgatta ccaagggcta tcacttcccc aacctcacgc
     5521 tggttggcgt cgttgatgcg gatctcggcc ttgccggtgg cgaccttcga gcggcggaac
     5581 gaagcttcca gcagatccag caggttgccg gtcgtgccgg gcgcggcgac aagccgggcc
     5641 gagtgttcgt gcagactcat gatcctgaag cgcaagtcat tgcggcgctg gtgaacggcg
     5701 acatagcggg cttctatgcc gccgaaacgg atgcccgccg cgaagcggcc atgccgccct
     5761 ttggtcgact tgccgcgatg atcgtttcag cagaggacgc tggcgaagcg gaagccgtcg
     5821 cgcgaaaaat tggtcgcgcc gctcctgatg tcgagggaat ggccgtgttc ggaccagcgc
     5881 cggcgccgct cgcaatgctg cgcggtcggc atcgccagcg cctgctggtg cacgcaaggc
     5941 gcagtcttga tgttcaggac gtgatccgcg attggcttgc ttcgctcgac tggagcagca
     6001 gggtccgtgt cagcgtcgat gtcgacccct acagtttcct ctgagaattc tgctcttcat
     6061 ccgcaattat ccgcgagtgc gagcgacccc ggccgaaagc gcgagtgact actcgcaagg
     6121 gtgcgagcgg acctgccgcg tcatccaatc aagattgtcc gagctcgtca gccggctccg
     6181 agccgcgaac ccacgctggg cggacgattt cgccgcggcg aatcgcgagc caaacgaagc
     6241 aggcacctac ggcagcggca ataaccaagg cgatcagcga cgcttcgagg ccgaagccac
     6301 caccggaaag gagcggcggc ccagcaagcc tcgccctaac gaggccatgg acgggtccgc
     6361 cggagactgg cacgccgaag acctcgccct gcgtcacgtt ccaagcggca tggatgccga
     6421 tcggcaacca caggtttcgt gtcagcatat aagcgccgcc gagaagaaat ccgccttcga
     6481 ttgcaacggc gagcgaagcg aaccaggtcg cgtttgcatt gaaaacgtgc gccatcccga
     6541 acaaagccga ggacataatg agtgcaaccc aggttccacc aagctcctcg agccagcgga
     6601 acaggattcc acgaaagaca atctcttccg tgaacgcagt catgaccccg gtcgtgacca
     6661 gctcgtggat gagctcgctg ctgtcaccct caccaaggag atgatagaca tgcgatattg
     6721 cagcaatgcc gaccgaggcg gccatcagaa gaaagccgat gaggatccct gctccaacat
     6781 tgaccactgc accggagtag gtgagatcat cgcgcgggaa cgcgccgagg cgaacgatcg
     6841 ccaccttgta cgtcgtcaga atgacgccaa gcacgagcgc atttgtcagc cacgtttgac
     6901 cggcttgcgt tggtagactg atgagcgaag cgagcgcctg cccgatttcg gaagctccga
     6961 tgaagagcgc aacagcaatt gcgagtgcaa cgagcgggaa atcaaggaaa tcgcgccagc
     7021 ttccctcagt cgccagccgg aaaccaaagc gccgggtcac gcatcctccc tcaagaacga
     7081 agagagcgct agagttggtg tattatggtg tcaacacaga ggcttaaatg aggcgtgggc
     7141 tttccgccgc aatgccttcc gcttcgagaa gtttcttctt gcgatcaatc ccgccgccat
     7201 agccgccaag acttccgtcg ctacggatca cgcgatgaca gggaataaga acgcagacat
     7261 gattgtcgcc gtttgccgat ccaacggcgc gaacggcttt gggatggccg accgcggccg
     7321 cgatttgtgc atagctgcgg gtttcgccgg gcgggattct tcgaagctcg cgccagacag
     7381 cttcctggaa tgcagtcccc gcgacgtcga tcggaagatc cggcatccta agtggctgtt
     7441 ggatagctgc gagcgctcct tcgactagct ccttaagacc gcccttatct tcgatgatcg
     7501 tggcgttggg gaacagccgc ttcagcgatt gttcgtcatc atcgaacgta aggcggcaga
     7561 tacccttgct tgtcgcggca atgaacatct tcccaagagg gctgtcaaaa tgggtccagc
     7621 ggatggtttc tccacggccc ccatcgcgcc atgctgaagg tgtcatgccg agcctctcct
     7681 tcgcgtcagt gtaaaagctg ctcgggcccg aatagcccgc ctcgtaaacg gcatcggtga
     7741 cacgctcatt tgccttcagc gcctgttccg tccggcggct gcgcaaaccg cgcgcatatt
     7801 cagccggaga tacgccgagg tcgcgcttga agatgcgctg gaagtggtgc ggcgcatagc
     7861 caaccgcaag agcgagttcc gaaagccttg gcgcctcatc g
//
LOCUS       DASRBJ010000255         2629 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_331964,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000255 DASRBJ010000000
VERSION     DASRBJ010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2629
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331964"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            191..913
                     /locus_tag="VE968_07065"
     CDS             191..913
                     /locus_tag="VE968_07065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51620.1"
                     /translation="MFRTVRHWWFEGNGQHTARLFVFEFVVVVAGVLVAQSLGEWMHD
                     REIDRQVTEENARVEYQIGRTQQFDRVWTAAPPCFRERMLSMIAAIDSGHRYPDDYLT
                     LPALAGYTVEPIPPAVALPMRDKYGAKRMEEFFAANVIAERDLTVARDLGDQWTKFAL
                     LNPRYGTLEGADRASMRAAGAQALRDLSRIQLAAAALETIGKRLRIAPIASADGHGGQ
                     ATFPAHSCDEIWRTGNIARSSP"
     gene            996..2315
                     /gene="gltX"
                     /locus_tag="VE968_07070"
     CDS             996..2315
                     /gene="gltX"
                     /locus_tag="VE968_07070"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008069727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HZU51621.1"
                     /translation="MSVVTRFAPSPTGRLHVGNIRTALHNFLFAKKYGGTFILRIDDT
                     DRARSTPEFDAAIRDDLDWLGLAPDHVVRQSERFDLYEREFERLKEAGRVYACYETPE
                     ELELRRKVLLGRGLPPVYERKPLDAPVPEDRAPHWRFRLDHDAPILVVDLIRGEQRFD
                     PKLLSDPIVRREDGSWLYLLPSVIDDIDLDITDIVRGEDHVTNSAVQMQMFEALGAKP
                     PQFAHEALLVASEGKLSKRLGSYGAEHLREEGVEPMALLDVLARIGTSQPVEPIASLD
                     ELAETFDFSTFGRAPAHFDPHEVELVNARLLHRLDYGAVADRLPEGASEGDWLLLRPN
                     LTRVSDFASWFSVLHGEIEAPDLPHDERLLVKDAAVIAEKLDWAQEPWRALTDEVKQA
                     TGKKGRELFHPLRLALTGRESGPEMAGLVRAMGKGRAVQRLEAAARR"
     gene            2414..>2629
                     /locus_tag="VE968_07075"
     CDS             2414..>2629
                     /locus_tag="VE968_07075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51622.1"
                     /translation="MLEYAAGRRQIAARPSSPNAMLVIISAHVALLAFVMSAKMDLPS
                     KIIFDPPTKIDLLPEPLPPQPQPIRHAS"
BASE COUNT          500 a          836 c          807 g          486 t
ORIGIN      
        1 gaggacatcg ggctcgttgc cgacatcgaa tccaaggtgc tgaaggccga gtacaagcgt
       61 cgccaggcgc ctccgggcgt gaagatcggc agccgcaact tcggccgcga tcgtcgctat
      121 ccgatcagca atttcttccg gagcggcaaa tagctgctac agctacgtcg ttcgggggag
      181 ggcgacggga atgttccgga cagtccggca ctggtggttt gagggtaacg gccagcatac
      241 ggcgcgcctt tttgtctttg aattcgtggt cgttgtggcc ggcgtcctcg tcgctcagtc
      301 gcttggcgag tggatgcacg atcgtgagat cgatcgccaa gtcacggaag aaaatgctcg
      361 ggtcgaatat cagatcggcc gtacgcagca gttcgaccgc gtttggaccg ctgctccccc
      421 ttgcttccgc gaacgtatgc tttccatgat tgcagccatc gacagcggcc accggtaccc
      481 agacgactat ctcacgctgc cggcccttgc tggttacact gttgaaccga ttccgcctgc
      541 ggtcgccctt cccatgcgcg acaagtacgg cgcaaagcgc atggaagaat tctttgcggc
      601 caacgtcatt gcggaaagag atttaaccgt agccagagat cttggtgatc aatggacgaa
      661 attcgcgctg ctgaacccgc gctatggaac gctcgaaggt gctgaccggg cgagtatgcg
      721 cgccgctggt gcgcaggcac tgcgagacct aagccgaatc cagcttgccg ccgctgcgct
      781 cgagaccatc gggaaaagac ttcgcatcgc tccgattgct tccgcggacg gccacggcgg
      841 gcaagccacc tttcccgctc acagttgtga tgaaatttgg cgaaccggca acatcgcacg
      901 ctcttcaccc tgaaagctgg aaatcaatct cgacgcagca gcccgctttc gacaacgcgc
      961 tagtcatgtc ggggtccacg ccttagtccg cgcgcatgtc cgtcgtcacc cgcttcgctc
     1021 cgtcgccgac cggccggctg catgtcggca atatccgcac ggcgctgcac aatttcctgt
     1081 tcgcgaagaa atatggcggg acattcatcc tcaggatcga cgataccgac cgggcgcgct
     1141 cgacccccga gttcgatgct gcgatccgcg acgatctcga ctggctgggg ctcgcgcccg
     1201 accacgtcgt caggcagtct gagcggttcg atctctatga acgcgagttc gagcggctga
     1261 aggaagcggg gcgggtctac gcctgctacg aaacgccgga ggagctggag ctcaggcgga
     1321 aggtgctgct cggccgcggc ctccctccgg tgtacgagcg caagcctttg gacgcaccgg
     1381 tgccggaaga ccgcgctccg cactggcgct ttcggctcga ccatgatgcg ccgatactcg
     1441 tcgtcgacct gatccgcggc gaacagcgct tcgaccccaa gcttctgagc gaccccatcg
     1501 tacggcgcga ggacggcagc tggctctatc tcctgccaag cgtcattgac gacatcgacc
     1561 tcgatatcac cgacatcgta cggggcgagg atcatgtcac gaacagcgcc gtccagatgc
     1621 agatgttcga ggcgctgggc gcgaagccgc cgcagttcgc ccatgaggcc ttgcttgtcg
     1681 ccagcgaagg caagctgtcg aagcggctgg gttcgtacgg cgcggagcac ttgcgcgaag
     1741 aaggggtcga gccgatggcg ctgctcgacg tgctcgcgcg gatcggcacg tcgcaaccgg
     1801 tcgagccgat cgcgtcactc gacgagctcg cggaaacatt cgatttttcg accttcggcc
     1861 gcgcgcctgc ccattttgat ccgcacgagg tcgagctggt caacgcgagg ctgctccacc
     1921 ggctcgatta tggcgccgtc gccgaccgct tgccggaagg tgcgagcgag ggggactggc
     1981 tgctgctcag gccgaacctt acccgcgtca gcgatttcgc atcctggttc tccgtgctgc
     2041 acggagaaat cgaggctccg gatctgccgc atgacgaacg cctgctggtc aaggacgctg
     2101 cagtaattgc cgagaagctc gactgggccc aggaaccctg gcgtgcgctt accgatgagg
     2161 tgaagcaagc cacgggcaag aagggccgcg agctgttcca tccgcttcgc cttgcgctga
     2221 ccggtcgcga aagcggaccg gagatggcgg ggctcgtccg cgcaatgggc aagggccgcg
     2281 cggtccagcg cctcgaagcc gccgcgcgac gttaactctc gactcaacag aatcggaaca
     2341 aagcctcttt tccaggattg tgtaatgttg taacatgccg aagcgccgag ccacttggga
     2401 gaggaggttc gaaatgctcg aatatgccgc aggccgccgc cagatcgccg cgcgcccgtc
     2461 cagccccaac gccatgctgg taatcatcag cgcccatgtc gcgctgctcg ccttcgtgat
     2521 gagcgccaag atggatctgc cgtcaaagat catcttcgac cctccaacga aaatcgatct
     2581 tcttccggaa ccgctgccgc cacagccgca gccaatcagg cacgcttcg
//
LOCUS       DASRBJ010000256         3880 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_594693,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000256 DASRBJ010000000
VERSION     DASRBJ010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3880
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_594693"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..259
                     /locus_tag="VE968_07080"
     CDS             <1..259
                     /locus_tag="VE968_07080"
                     /inference="COORDINATES: protein motif:HMM:NF024954.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="leucine zipper domain-containing protein"
                     /protein_id="HZU51623.1"
                     /translation="VAKWVARFRAEGVDGLRDRSSRALSSPDQTPVATCDAIEGLRRQ
                     RYTGKQIAVEFGISSVTVSRILRRLGLNRMRDLAPTEPVRR"
     gene            complement(278..1029)
                     /locus_tag="VE968_07085"
                     /pseudo
     CDS             complement(278..1029)
                     /locus_tag="VE968_07085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612221.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
     gene            complement(1167..2157)
                     /locus_tag="VE968_07090"
                     /pseudo
     CDS             complement(1167..2157)
                     /locus_tag="VE968_07090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611554.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(2179..2781)
                     /locus_tag="VE968_07095"
     CDS             complement(2179..2781)
                     /locus_tag="VE968_07095"
                     /inference="COORDINATES: protein motif:HMM:NF033580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HZU51624.1"
                     /translation="MELDRSALSALERLRCLAECGHRSRRDDGRERTLQHRLNNGSGS
                     RLGSGRKRGIHRRALGRSRGGFTRQIHCIGDARGRPIAFHLTPGEAADCKSDEALIDL
                     PEQAPDALLADKAYDTDAIRADLKQRRIKPVIPPKSNRIKTIRYSKRLYRQRTCIERV
                     LGHLKINRAGATRYDQLAESFLGMLFIASARYWIKFVHAA"
     gene            complement(2685..2999)
                     /locus_tag="VE968_07100"
                     /pseudo
     CDS             complement(2685..2999)
                     /locus_tag="VE968_07100"
                     /inference="COORDINATES: protein motif:HMM:NF033580.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            3230..>3880
                     /locus_tag="VE968_07105"
     CDS             3230..>3880
                     /locus_tag="VE968_07105"
                     /inference="COORDINATES: protein motif:HMM:NF013757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HZU51625.1"
                     /translation="MDFGVRSTAVALDILETVAFAPKEIGVSAIATELGLAKSAVFRH
                     LQTLLDRGYVRRNSATSRYRLGVKLQLLAQLTADEDNLLAAAEGPMSDLRDEVGETIV
                     LSALERSGVRVVATSIRNSMLEIGVRVGSLLPFASSAQGKTILAHLPREMADQLLDSV
                     QGEKILRKLNRELSRARRQGWLESAGEVMPGVNAIAAPIFDASDSCIGAIAVVGLFA"
BASE COUNT          714 a         1170 c         1206 g          790 t
ORIGIN      
        1 ggtggccaag tgggtcgcgc ggttccgcgc ggagggagtc gatggcttgc gcgaccgctc
       61 ctcaagagct ctttcatcgc cagaccaaac gccggtcgcc acctgtgacg ccatcgaggg
      121 tttgcgccgc cagcgctaca caggcaagca gatagccgtc gaattcggta tatcttcggt
      181 aaccgtcagc cgaatcctgc gccggctggg attgaaccga atgcgcgatc tggcgccgac
      241 cgaaccggta cggcgctagg atccggactc aattgagcta cgagatgacg gttgcggcga
      301 gtatggcact ggccaggaag tttctggcga gcatatcgta gcgggcgggt cgcaatgcgg
      361 cggaagtcgt tgaggcgagc gaacatccgt tcgatgagat tgcgttggcg ataggcgatc
      421 ttgctgtagc cgatcggtcg gcggctgctg gcggtggagg gaatgacggc cttggcccct
      481 tgatcggcga gaagccggcg caggccgttg gcgtcgtagg ccttgtcggc gatgggacgc
      541 ttgattggcc gggctcgcgg aaaccacggt cgaggccatt gcaatatcat tgacgttgcc
      601 gggcgagagc agcaggacac gtggcctgcc ttgctcgtcg gtcagcgcgt ggattttcgt
      661 ggtgcggccg ccgcgcgagc ggccgatagc ttcgcggaag gccccctttt ccgcccgctg
      721 ccgagcggtg tgctttgatg tgggaactgt caatggccgc gctggcaatg atgcctgtcg
      781 agccgtcaaa acctcgaaga tatcgaacca gagcccctgc cggctccagc ggttaaagcg
      841 gttatagacg gtcgtgtagg ggccgtattc cggcgggcag tcgcgccagc gcgcgcctga
      901 gcgcagcata ttcccgatcc cgctgatgac gcgcccgtca tccacccgac gcgcaccgcg
      961 ccgaccgcgc ggcgacagcg gttccagccg ttcccatccc ctgtcactga gccaataaag
     1021 ctgcctcatc atcaacaagg cctccgtcga ttcggaggcc ttgactcaca ccttcgcccg
     1081 ccacggaatc cttattgagt acagacccta gggctcatcc agccgagctg cgcgtgaggc
     1141 ccggccgtgt tgtaatcggt tcgtcaagcc tcgagcgcgg cgcgcgcatg taacagcgat
     1201 cggaacagcg tctcgttgaa aagctcgttg cgcagacggc cgttgaagga ctcgacgaag
     1261 ttgttctgga ccagcttgcc cggtgcgatg taatgccagg cgagtttgtt acggtcggcc
     1321 cattgtggaa tggcgttcga agtcaactcg gtgccgttct cgctgacgat ggtgccgtgc
     1381 tcgccgacga gccgatcgaa cttgcgcacg attcggatgc cgacgattgg agtgtcgggg
     1441 atcagcgcca ggcactcgcg cgtgcagtcg tcgaccacga cgaggatacg aagccggcgg
     1501 ccgtcaatga accgatcgga tacgaagtcg ggcgaccagc gctcgttcgg aagctgcggc
     1561 acgatcatcg tgcgtgcccg tgcccaacgc gtgctttggg ccggatcgcc ggcggacctg
     1621 cagcccttcc tcgcggtaga gccgaatagc cacttgtggt tcaccgtaaa gcgctcctgc
     1681 cgtagcagaa cgtgcaggcg ccggtagccg aggcaccggc gttcgtgcgc caaggctcgc
     1741 agcctcatcc gcagggctgt gtcgtccggt cgacgcgagc ggtagcatac ggtcatccgc
     1801 acacagccga tggtcctaca cgcccgtcgc ccgctcattt cgaacgcaga gcccaggtga
     1861 ccgacggcct ctcgcttgcc agcgggcgtc accattttgt tttgccggca ggtcctacag
     1921 cgccgcgttg tcgagcatgg cgtccgccaa aagcttcttc agcctagcgt tctcgctgtc
     1981 cagccccttg aaccgcttgg cctcggagac ttcaagcccg ccgtacttgg ctgttcagtt
     2041 gtaaaaggtc gcatcgctga tcccgtgctt gcggcacaga tcggccgcct tcatcccggc
     2101 ctcgtgttcc ttcagaatcg caatgatctg ctcttccgtg tgccccttgc gcttcatcgt
     2161 ctgggtcctt cccgaggcct aggccgcgtg gacaaatttg atccagtaac gtgctgatgc
     2221 gatgaatagc atgccgagga aactctcggc gagctggtca tatcgcgtgg cgccggcgcg
     2281 gttgatcttg aggtggccga gcacccgctc gatgcaagtg cgctgacgat agaggcgctt
     2341 gctgtagcgg attgttttaa tgcggtttga tttcggaggg atcacgggtt tgatccggcg
     2401 ctgcttcaaa tcggctcgga tcgcgtcggt gtcgtaagcc ttgtcggcaa gaagggcatc
     2461 cggcgcctgc tcggggagat cgatcagcgc ctcatcgctc ttgcagtccg ccgcttcgcc
     2521 gggcgtgaga tggaaggcga tcggccggcc tcgggcatcg ccgatacaat gaatttgacg
     2581 ggtgaacccg ccccgcgagc ggccaagagc tcgtcgatga atcccccttt tccgcccgct
     2641 gccgagacgt gagcccgaac cgttgttgag tcgatgttgt agtgtccgct ctcggccatc
     2701 gtctcggcga gagcgatggc cacactctgc cagacaccgc aggcgctcca gcgccgaaag
     2761 cgccgatcga tcgagttcca gttgccgtac ttttccggca catcgcgcca cggcgcaccg
     2821 gtacgcagcc gccacgagat gccgttgatg atgttgcgat tgtcgtcggg cggccggcct
     2881 cgcccgcgct tccccggctc tcgctcaacc ggcaacaaaa tcttcaatac gcgccactcc
     2941 gactccgtca ggtcgccacg gctcaaggct gcctcctcga atctgcagcc ttgaatcaaa
     3001 acgagattct tgcgtcaatg gattttgtcc acgccgccta gactccaatt cgtcttggat
     3061 caattcaggg ggcagcgtca ccacagttgg agtatcccct ttctcgcctg acaaagaacc
     3121 cccttacgtc accggatctc gaaactcgct tgacggggga aggaaagtca cggcataatg
     3181 ctatagaacg atgttctcga ccagagaacg aaagatggct gtctaggccg tggatttcgg
     3241 ggttcgatcc actgcagttg cactcgatat tctcgagacg gtcgctttcg caccgaaaga
     3301 aatcggcgtt tcggctatcg cgacggagct cgggctcgcg aaaagtgcag ttttccgaca
     3361 cctgcagacg cttctcgatc gcggctacgt caggaggaat tcggcgacat cgcgctatcg
     3421 cctcggtgtc aagctgcagc tgctagccca gcttacggct gacgaagaca atctgcttgc
     3481 agcagcagaa ggtccaatgt cggacctgcg tgacgaagtg ggtgaaacga tcgtcctatc
     3541 cgcgctggaa aggtcagggg tgagggtcgt tgctacgagc atccgcaact caatgctgga
     3601 aattggagtg cgggtaggca gtcttctacc tttcgcttcg tcagctcaag gcaaaacgat
     3661 cctcgcgcac ctgccacgcg agatggcaga ccaacttcta gatagcgtac aaggcgaaaa
     3721 aatacttcgt aagctgaacc gtgaactttc tcgcgctagg cgacagggat ggctcgaatc
     3781 ggcgggcgag gtaatgcccg gagtgaatgc aattgcagcg ccgatttttg atgcctcgga
     3841 ttcctgtatt ggggccattg cggtcgtggg gctttttgcg
//
LOCUS       DASRBJ010000257         3072 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_177038,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000257 DASRBJ010000000
VERSION     DASRBJ010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3072
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177038"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(139..1746)
                     /locus_tag="VE968_07110"
     CDS             complement(139..1746)
                     /locus_tag="VE968_07110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007709570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
                     /protein_id="HZU51626.1"
                     /translation="MPSLGPAPGPIGTVTEIAGSGSQIRLDAAAVTALQSHKDPSIAM
                     SGQVGSQIKTVVGNSWLIANVRTLRVGGEGELVAFVDFLGEGSRDSVGRMINFRRGVT
                     RYPIPGAEVLPVSTEDLRAVFAATDEPHIEIGTVYPTDDIRGALYVDPMLSKHFAVLG
                     STGTGKSTSVALILHRISQLSPEGHIVMIDPHGEYSAAFKGCGELFNVDNLQLPYWLM
                     NFEEHCEVILTTQGQERQRDADILAKCLLAARTKGKDVSQFGKVTVDSPIPYLLTDLN
                     AILVNEMGKLDRAGDTLPFQRIKTKLDELRADPRYTFMFSGMLVSDSMGSFIARLFRL
                     PSQGRPISIVDVSGVPSEVTSVVVSVLARMVFDYAIWSRTEAQRPLLLVCEEAHRYVP
                     KDEKSGAQSVRRILERIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIVSMRLNNDR
                     DQACVRAAMPEGARGFLDAIPALRNRECIVCGEGVAIPIRVRFDDLEPEKRPASSDPS
                     FARLWRETGDEEGIIQRTIKRWRGHGR"
     gene            complement(1901..2674)
                     /locus_tag="VE968_07115"
     CDS             complement(1901..2674)
                     /locus_tag="VE968_07115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02186 family protein"
                     /protein_id="HZU51627.1"
                     /translation="MSVRARDVALLVALLAPVELAADKPILVPDISARQVQIRYSFNG
                     AQLLLFGAVVYPGGRPPDRQVDIAVVLRGPVQPILVREKQKIAGIWMNADSNRFRSAP
                     SFYAVASSRPISQLLDERTAAIYELGIHNLQLSPGGGALPEKERRFEAGLLDLRSRRN
                     LYQENPAGVEITGGVLYRAVITIPSEVPVGTYTAETFLIDRHKVVAAASRDIQIDKSG
                     FERTIAVAARRDRFLYGLMCVLLSLTLGYGAAAAFRRRF"
     gene            complement(2665..>3072)
                     /locus_tag="VE968_07120"
     CDS             complement(2665..>3072)
                     /locus_tag="VE968_07120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HZU51628.1"
                     /translation="GLYISPIAPLALGFIAGTLTVFLGIGGGFILVPAMIYLLGMPAR
                     IVIGTSLVMILAVSAATTMVHALTTRAVDAVLAGLLLVGGVIGAQYGALLTLRLKPDF
                     VRLALSLIILLVGLRMFLGLFWHPDEIFSIEYL"
BASE COUNT          674 a          899 c          914 g          585 t
ORIGIN      
        1 gaggatcgac actgcgcccg tggtcgatcg cggtctcgcc gaggccatca agttgcgcct
       61 cgacgcgttg atgaccatcg cgtcgaagcg cagctaagaa taggtgcgcg caggcgtcag
      121 cccaagaggg acaagggcct agcggccgtg gcctcgccag cgcttgatcg tccgctggat
      181 aatcccttcc tcgtcgcccg tctcgcgcca cagccgggca aagctcggat cagacgatgc
      241 gggtcgtttc tccggttcga gatcatcgaa gcggacgcgg atcgggatag caacgccctc
      301 gccgcagacg atgcattctc ggttacgaag tgccgggatc gcgtcaagaa agcctcttgc
      361 tccttcgggc atcgctgcgc gaacgcaagc ctggtcgcga tcgttgttga ggcgcatcga
      421 gacgatcgtg ccgcactgcg acagcacgcc ttcggcaagg tccgagggac gctgagtaat
      481 cagtcccagc gacacaccat atttgcggcc ttccttggca atgcgctcga gtattcgccg
      541 gacggactga gcaccggatt tctcgtcctt cggaacgtaa cgatgggctt cttcgcatac
      601 taacaacagc ggtcgctgcg cttcggtgcg cgaccatatt gcgtaatcga aaaccatccg
      661 ggcgaggacg gaaacaacga ccgacgtgac ttccgatggt actcccgaca cgtcgacgat
      721 cgaaatggga cggccctggc taggcagtcg aaacaaccgt gcaatgaagc tgcccatcga
      781 gtcggagacc agcatgcccg agaacatgaa ggtgtaacgc ggatccgcgc gcaactcgtc
      841 cagtttcgtc ttgatgcgct ggaacggtag cgtgtcaccg gcgcggtcaa gcttgcccat
      901 ttcgttgacc aggatggcat tgaggtcggt cagcagataa ggaattggac tgtcgaccgt
      961 aaccttgccg aactggctta cgtccttgcc cttggtgcgt gccgcaagaa ggcacttagc
     1021 gagaatgtcc gcgtcgcgct ggcgctcctg gccctgcgtc gtcaggatga cttcacaatg
     1081 ctcttcgaaa ttcatcagcc aatagggaag ctgaagatta tcgacgttga atagctcgcc
     1141 gcatcccttg aatgccgccg aatattcgcc gtgaggatcg atcatgacga tgtgaccctc
     1201 gggtgaaagc tgtgaaatcc ggtgtaagat gagcgcgaca gaggtcgact tgccggtgcc
     1261 ggtcgacccc aagaccgcga aatgcttcga aagcattgga tcgacataga gagcaccgcg
     1321 gatgtcgtcc gtcggataga cggttccgat ctcaatatgt ggttcatccg ttgccgcgaa
     1381 caccgcacga aggtcctcgg tcgagacggg tagcacttca gcgccgggaa ttgggtatcg
     1441 cgtaacgccg cgcctgaagt tgatcattcg gccgacagag tcgcggctac cctctccaag
     1501 gaagtcgacg aaagcaacaa gctcgccctc tccaccgacg cgcaaagtgc ggacgttagc
     1561 gatcagccag ctgttgccaa caaccgtctt gatctggctt ccgacctggc ccgacatcgc
     1621 gatcgacggg tccttgtgcg attggagcgc ggtcactgcg gcggcatcaa gcctgatctg
     1681 cgacccggag ccggcaatct cggttaccgt cccgattggc cccggcgccg gtcccaacga
     1741 cggcattggt gcggctggac tttcatcggc actgaaactg ctgacttcat tgagaaaatc
     1801 gtgcaggttc gacttatgct catccatcaa tggatatact cccacgctga tctcgcgtcg
     1861 gaataagcaa cagcggttaa gattaacttg aggacgcctc ttaaaagcgg cgccgaaatg
     1921 ccgctgcggc cccatagcca agggtgagcg agagaaggac gcacatcagg ccgtaaagga
     1981 aacgatcgcg ccgcgctgcg acggcaattg tccgctcgaa ccccgacttg tcgatctgta
     2041 tgtcgcgact tgcggcagcg accaccttgt gacgatcgat gaggaaggtc tccgcagtgt
     2101 aggtgccgac cgggacttcg ctcgggatcg tgattacagc gcgatatagg acgccaccgg
     2161 tgatttcgac tcccgccgga ttttcctggt aaagattcct tcggctgcga aggtcgagaa
     2221 gcccagcctc gaaccgcctt tccttctcgg gtaatgcgcc tccgccgggg gaaagttgca
     2281 aattgtggat accaagctcg taaatcgcgg ccgttcgctc atcgagcaat tgggaaatcg
     2341 gcctcgacga ggctacggca taaaaggagg gcgcggagcg gaaccggttc gaatccgcgt
     2401 tcatccagat ccccgcgatt ttttgctttt cccgcaccag tatcggttga acggggcctc
     2461 ggagcacgac cgcgatatcc acttgtcggt ccggcggacg tcctccggga tagaccaccg
     2521 caccaaagag cagcaattgg gcgccgttga aactgtaccg gatctgcact tgtcttgccg
     2581 aaatgtccgg taccaggatg ggcttgtcgg ccgctaattc aaccggcgca agcagtgcaa
     2641 ccagaagggc gacgtcgcga gctctcacag atattcgatc gagaatatct cgtcgggatg
     2701 ccagaacaac ccgaggaaca tcctcaagcc gacgagcaag atgattagcg acaaggcaag
     2761 acggacgaag tcgggcttca ggcgcagcgt cagcagtgcg ccatattgtg ctccgataac
     2821 gccgcctacg agtagcaagc ctgcgagcac ggcgtcgacc gcacgtgtgg tcagcgcatg
     2881 caccattgtt gttgccgcgc tgacggcaag gatcatcacg aggctcgttc caatgacgat
     2941 ccgtgccggc attccaagca ggtaaatcat cgccgggacg agaatgaaac cgccgccgat
     3001 gccgagaaag accgtgagcg tgccagcaat gaatccgagc gcaagcggag caatgggtga
     3061 gatgtagaga cc
//
LOCUS       DASRBJ010000258         3328 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_542254,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000258 DASRBJ010000000
VERSION     DASRBJ010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3328
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_542254"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..190)
                     /locus_tag="VE968_07125"
     CDS             complement(<1..190)
                     /locus_tag="VE968_07125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008810 - cellulase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase N-terminal Ig-like domain-containing
                     protein"
                     /protein_id="HZU51629.1"
                     /translation="MKLWVACAAALAGLAVVPARAGPAASIRLNQLGELPDGPKIAVE
                     PNASGEPVDWKLIDRDGRI"
     gene            complement(187..1842)
                     /locus_tag="VE968_07130"
     CDS             complement(187..1842)
                     /locus_tag="VE968_07130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HZU51630.1"
                     /translation="MLAAPASARETSARFGWFDYEGKELGPHPGPGQYHNPILQGFYP
                     DPSLIRVGEEYFLANSTFAYFPGIPIFRSRDLVHWTQIGNAIDRPDQFNFAGLGVSEG
                     MFAPSISEHAGTWYIVNVCVGCGGNFVVTAKSPAGPWSSPTFIHGLDGAIDASLFFDE
                     DGTSWIVYNGPPPGKPRYDGHRAIWLRRFDTKTGQPASEPALLINGGIRPDTDPVWIE
                     GPHIFKRKGYYYLIAAEGGTGENHSEVVLRSTHVAGPYARGPANPILTQRDLPKGRPA
                     AVTSAGHASFVVTPNGDWWAAFLATRPYADDFYNTGRETFLLPVSWQDDWPLVLPRGE
                     AVPAIQQRPDLPPERQGSIPTSGSFKIIDKFTERKLPLYWMMLRTPRRRWYSMNAGML
                     ELKARPVSLGSRGNPSFLGRRQQHADASASTMLRFCPARDGARAGLVALQNEASWYFV
                     GLVRHGDKLSVTLDRRSATDQPLDGVTLVSVPFRARRGAPLFLKVRARGARYDFYYAY
                     KPNDWLPLKLGEDGTLLSTKRAGGFVGAMLGLYAYQPGAKERE"
     gene            complement(1875..2255)
                     /locus_tag="VE968_07135"
     CDS             complement(1875..2255)
                     /locus_tag="VE968_07135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51631.1"
                     /translation="MKRIILFILPAAAACSPQPTASPRLVNAGASVNCIDLKQVVGRR
                     VLPPSAVLFEMPGRIAYRNEFQGSCPGAARADPSAIIETESQSSELCRDDRVRIYDPV
                     EARATGPRSFAECRLGSFTAVPGD"
     gene            complement(2267..>3328)
                     /locus_tag="VE968_07140"
     CDS             complement(2267..>3328)
                     /locus_tag="VE968_07140"
                     /inference="COORDINATES: protein motif:HMM:NF012551.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endo-1,4-beta-xylanase"
                     /protein_id="HZU51632.1"
                     /translation="AFAAQSARRFGSAIAWAPAGVDAGSINNSRYAGLVERECSLLVP
                     ENQLKWQWVRRSPGAFDFRAFDAIAAYAAAHGFKLRGHTLFWTPTKWYPKWLAAMDFG
                     AQPAARAIAEKLLIDHVRTVCRRYGTKIYSYDVVNEAIQPETGEIRETNVTRALGGEH
                     FLDLMYHTARDEAPHAQLVYNDYMSWERNPVDERHMEGVLKLLAGFRKRGTPVDALGV
                     QSHIRLLKKEPVGAIVRESEGPWRHFIDAVVGMGYKLLITEFDVNDHAAPTDILVRDR
                     MVADYGRAYLDLMLSYPQLGDVLAWGLTDRYSWLTGFDPRADKTRQRGTPYDVDFRPK
                     LLRSAMATSFHSASSHHVS"
BASE COUNT          675 a         1003 c         1024 g          626 t
ORIGIN      
        1 caatgcgtcc atcccggtcg atgagcttcc agtcaacggg ctcgcccgat gcgttcggct
       61 cgacggcaat ctttggcccg tcggggagct cgccaagctg gttgaggcga atggaggcag
      121 ccggtccagc ccgcgcagga accactgcaa gcccggctag ggcagccgcg caagccaccc
      181 agagcttcat tcgcgctcct ttgcgcctgg ttggtaagcg tagaggccaa gcatcgcacc
      241 aacaaacccg ccggctctct tcgtgctaag gagagtgccg tcttcgccga gcttcaacgg
      301 cagccaatca ttgggcttgt acgcataata gaagtcatag cgagcgccgc gtgcgcgcac
      361 cttcaggaag agcggcgcgc cgcggcgcgc cctgaacggc accgaaacca gtgtcacgcc
      421 gtcgagcggc tggtccgttg ccgatcgacg atcgagcgtc acactgagtt tgtccccgtg
      481 ccgaaccaac ccaacaaaat accagctcgc ttcgttctga agggccacaa ggcctgcacg
      541 tgcgccatcc ctcgccggac aaaaccgtag catcgtcgat gccgacgcgt ccgcatgctg
      601 ttggcgtcgg ccaagaaacg acgggttccc acgactacca agactgactg gccgggcctt
      661 tagctcgagc attcccgcgt tcatcgaata ccagcgacga cgcggcgtcc gaagcatcat
      721 ccagtagagc ggcagtttgc gttcggtgaa cttgtcgatg atcttgaatg agccgctcgt
      781 gggaattgag ccttgccgct caggtggaag gtcgggtcgc tgctggattg cgggaacagc
      841 ctcacccctc ggcaggacga gtggccagtc gtcttgccag cttacgggca agaggaaggt
      901 ctcacgtcca gtattgtaga agtcgtcagc gtagggacgc gttgcaagaa acgcagccca
      961 ccaatcgccg ttcggtgtca cgacgaacga cgcatggcct gccgaggtga ccgcggctgg
     1021 tcgccccttg ggcagatctc tttgcgtgag gatcggatta gcgggcccac gagcgtaagg
     1081 accagcgaca tgcgtgcttc gaagcacgac ctccgagtgg ttctcgccgg tgcctccctc
     1141 ggcagcaatg agatagtaat agcctttgcg tttgaagatg tgcggtcctt cgatccaaac
     1201 cggatccgtg tctggacgga tgcccccatt gatgagcagc gcgggttcac ttgctggttg
     1261 acccgtcttc gtgtcgaagc gcctcagcca gatggcgcgg tgtccgtcgt agcgcggctt
     1321 tcctggcggc gggccgttgt agacgatcca tgaagtgccg tcctcatcga agaacagcga
     1381 tgcgtcgatc gcaccatcga ggccatggat gaacgtcggg ctcgaccagg gtcccgccgg
     1441 gctctttgcg gtgacgacga agtttcctcc gcaaccgacg caaacgttga cgatatacca
     1501 ggtaccagca tgctcgctga tcgaaggagc gaacatgcct tccgagacgc cgagccccgc
     1561 aaagttgaat tggtccggcc ggtcgatcgc attgccgatc tgcgtccaat gcacgagatc
     1621 gcggctgcga aagatcggaa ttccgggaaa ataggcgaac gttgaattcg cgagaaaata
     1681 ctcctcgccg acgcggatta gactggggtc gggataaaag ccctggagga tggggttatg
     1741 atattggccc ggaccgggat gcggcccaag ctcctttcct tcataatcga accatccgaa
     1801 acgtgcgctg gtctcccgcg cactcgcggg cgccgctagc atgaccgcaa gtagaagcgc
     1861 atcgcgtttt cgcatcaatc gccgggaacg gcagtgaagc tgccgaggcg gcattcggcg
     1921 aatgaacgcg ggcccgtcgc gcgcgcttcg accggatcgt agatgcgaac ccgatcgtca
     1981 cggcagagct cgctcgattg cgactctgtc tcgatgatgg cggacggatc agcacgtgcg
     2041 gcgccagggc agctgccttg gaactcattg cgataggcga tgcggccagg catctcgaag
     2101 agaacggctg acgggggaag aacgcgtcgg ccgactacct gcttaagatc gatgcagttc
     2161 acacttgcac cggcattcac aagccgtggg ctagccgtcg gctggggact gcaggccgcc
     2221 gcggcaggca gaatgaacag gatgatccgc ttcactgtca cctccttcag ctgacatgat
     2281 gtgacgaagc cgaatgaaaa gatgttgcca tcgccgatcg cagcaacttg ggtctgaagt
     2341 cgacatcgta aggcgttccg cgctgccgcg tcttgtcggc acgtgggtcg aaaccggtga
     2401 gccatgaata tcgatccgtg aggccccagg cgagaacgtc gccgagctgc ggatagctca
     2461 acatcaggtc gagataagct cggccatagt ccgctaccat cctgtcgcgc accaatatgt
     2521 cggttggagc ggcgtgatcg ttgacgtcga attcggtgat aagcagcttg tagcccatgc
     2581 cgaccaccgc gtcgatgaag tggcgccagg ggccctcaga ctcgcgaaca atagcgccga
     2641 cgggctcctt cttgagaagg cgaatatgcg attggacgcc gagcgcatcg actggcgttc
     2701 cccgtttgcg aaagccagcg aggagcttca gaacgccttc catgtgcctt tcgtcgacgg
     2761 ggttgcgttc ccagctcata taatcgttgt agacgagctg cgcatgcggc gcttcgtcac
     2821 gtgccgtgtg gtacatgagg tcgagaaaat gttcgccgcc aagcgcccgc gttacattcg
     2881 tctcgcgaat ttcccctgtt tccggctgaa tcgcctcgtt gacgacatca taggagtaga
     2941 ttttcgttcc gtatcggcgg cagaccgttc gcacatggtc gatgagcagc ttctcggcga
     3001 tcgcgcgcgc cgcgggttgc gcgccaaaat ccatcgccgc gagccacttc gggtaccact
     3061 tggtcggcgt ccagaagagc gtatgaccac gcagcttgaa cccgtgcgcc gcggcataag
     3121 cagcaatggc atcaaacgcg cgaaagtcga aggcaccggg tgagcgacgt acccattgcc
     3181 acttcaactg gttctccggg accagcagcg aacattcgcg ttcgacgagc ccagcatagc
     3241 gagagttgtt gatgctgccg gcatcgacgc cggccggagc ccatgcaatg gccgaaccga
     3301 accgacgcgc gctttgtgcc gcgaatgc
//
LOCUS       DASRBJ010000259         2809 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_234167,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000259 DASRBJ010000000
VERSION     DASRBJ010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2809
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234167"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1904
                     /gene="hrpB"
                     /locus_tag="VE968_07145"
     CDS             <1..1904
                     /gene="hrpB"
                     /locus_tag="VE968_07145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent helicase HrpB"
                     /protein_id="HZU51633.1"
                     /translation="PLEIRHVGRDAALRLEPQVASVIKSALSDQEGSILAFLPGVAEI
                     ERTAEALGNIPADVELHKLHGSVDPATQRTALVAPPAGKRKLVLATSIAETSVTLEDV
                     RIVVDSGLARRPRYDRGAGLTRLVTERASQAAVAQRAGRAARQRAGVAIRLWEEPATA
                     SLPAHDPPEILEADLSSLLLTSLLWGETDPRRLPFIDPPAAAALEEARRRLLSLGAMD
                     SEGRVTEHGRKIAALPLEPRLAHMLVEASARGFGAAAANVAVLLTERGLGGNDADLEL
                     RLSRWRNDQSRGAISARKLGASLLRRVEKGQTERSAHDLGKALALAYPDRLARRRDTT
                     GEAWQSVGGRGFRLDGGSSLARSEWLAVGEVAGHASGARILSAAPIEESVILDLFADR
                     IETRHDAAFDLSSGAVLPTRSRRLGTIRLASGPDPNPDSEAIERALLDAVQRHGLDLL
                     PWSDEARRLRERANFARAYDADIPPLDDESLLEHANERLAPLIANKRRLSDIHPGALT
                     AALQQVLGFEALTRLNRLAPPNFLSPAGTSHAIDYGAPGGPTVEVRAQALFGLTRHPT
                     VAAEKVPLVLAITSPAGRPIQTTRDLPAFWSGSWREVAKEMRGRYPKHPWPDDPASAA
                     PTLRSKRAS"
     gene            complement(1901..2494)
                     /locus_tag="VE968_07150"
     CDS             complement(1901..2494)
                     /locus_tag="VE968_07150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51634.1"
                     /translation="MRSTIILLLTAATFAASGCNRSSANGGTASAETKNVASEASKDP
                     IASAESAAPAALARDATIMAADASGAMKTLRPGKNGWTCIPDDPQTPGPDPMCMDANA
                     AKWVQALMGHKPPPDGVPGVMYMLEGGTDASNTDPYATKPTSSNDWIKTGPHLMIVGA
                     KAMLQGYPSGAKPNTSAPYVMWAGTPYAHLMVPVAKP"
     gene            2597..>2809
                     /locus_tag="VE968_07155"
     CDS             2597..>2809
                     /locus_tag="VE968_07155"
                     /inference="COORDINATES: protein motif:HMM:NF016674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase ubiquinone Fe-S protein 4"
                     /protein_id="HZU51635.1"
                     /translation="MTTARIVELERKTTQSGKANAGLWLLEFERQEAQRPDPLTGWNG
                     SGDTNTQVRINFQTKEAAVAYCEKHGL"
BASE COUNT          485 a          921 c          859 g          544 t
ORIGIN      
        1 tcccacttga aattcgccat gtcggtcgag acgcggccct gcgcctcgag cctcaagtcg
       61 caagcgtcat aaagtcggca ctttccgacc aggaaggctc catcctcgcg ttcctcccgg
      121 gcgttgccga aatcgaacgg accgcggagg cgcttggcaa cattcccgcg gacgtcgaac
      181 tccataagct ccatggcagt gtcgacccag cgacgcagcg cacggcactt gtcgcgccgc
      241 cggctggcaa gcgtaagctc gttcttgcga ccagtattgc cgagacgagc gttactcttg
      301 aagacgtgcg gattgtcgtc gacagcggcc ttgcgcgccg gcctcgctac gatcggggcg
      361 ctggtctgac gcggctcgtt acggaacgcg caagccaggc agctgtcgcc cagcgcgccg
      421 gccgcgctgc gcgccagcgc gcgggggtag cgatacgttt gtgggaagaa cccgcaacgg
      481 catcgcttcc ggcgcacgat ccgcctgaga tccttgaagc cgatctttcg agcttgctgc
      541 ttacgtctct cttgtggggt gagaccgatc ctcggcgcct tcccttcatc gacccgccgg
      601 ccgctgccgc gctcgaggaa gcacggcggc ggctcttatc tctcggagcg atggactctg
      661 aagggcgcgt gaccgagcac ggccgcaaga tcgccgcttt acccttggag ccgcgacttg
      721 cgcacatgct ggtcgaggcg agcgcacggg gatttggtgc ggccgcggcc aatgttgccg
      781 tgctgctgac ggaacggggt cttggcggca atgatgccga tctcgaactg aggctgagcc
      841 gctggcgaaa cgaccagtca cggggggcaa tcagtgctcg aaagcttggc gcaagcctgc
      901 tgcggcgggt cgagaagggc caaacagagc gcagcgctca tgaccttggt aaagcactcg
      961 ccctcgccta ccccgaccgg cttgcccgcc gacgcgacac gaccggcgaa gcctggcagt
     1021 ccgtcggcgg tcgtggcttc cgcctcgatg ggggttcatc gcttgcaagg agcgagtggc
     1081 tcgcggtcgg cgaagtggcc ggccacgcat ccggcgcccg gatcctctcg gctgcgccga
     1141 tcgaggaatc ggtcattctc gatctgttcg ccgacaggat cgagacgcgc cacgacgcgg
     1201 cgttcgacct ttcaagcggc gcggttcttc caacgagaag ccgtcgactc ggaaccatcc
     1261 ggctcgcaag cggtcccgat cccaaccctg acagcgaagc aatcgaacga gcattgctcg
     1321 atgccgtcca gcggcacggc ctcgatctct tgccctggag tgacgaggct cgtcggctgc
     1381 gcgagcgtgc gaactttgca cgagcctacg atgccgacat cccgccgctc gacgacgaaa
     1441 gtctcttaga acacgccaac gagcggcttg cgcccttgat tgccaacaag cggcggcttt
     1501 cggatatcca tccgggcgcg cttaccgcgg cgctccagca ggttcttggg tttgaagcgc
     1561 ttaccaggct gaaccggttg gcaccgccga atttcttgag ccccgccggt acaagccacg
     1621 cgattgacta tggagcgccc ggcggtccca cggtcgaggt tagagcccaa gcactttttg
     1681 gtctcacgcg gcacccgacc gttgccgctg agaaggtacc gctcgtactc gccatcacct
     1741 cgcccgctgg tcgccccatt caaacgacgc gcgatttacc tgccttctgg tcgggcagct
     1801 ggcgcgaggt cgcgaaggaa atgcgtgggc gctacccgaa acatccatgg ccggacgatc
     1861 ctgcatcggc agcacccacg cttcgatcaa aacgcgcttc ctagggcttt gcgaccggca
     1921 ccataaggtg cgcataaggt gtcccggccc acatgacgta aggagccgaa gtgttcggct
     1981 ttgctccgct cgggtagcct tgaagcatcg ctttggcccc aacaatcatg aggtgcggcc
     2041 ccgtcttgat ccagtcgttg ctcgaggttg gcttcgttgc gtaaggatcg gtattgctcg
     2101 cgtcggttcc cccttcgagc atgtacatga cgcccgggac gccgtcgggc ggtggcttat
     2161 ggcccatcag tgcctgcacc catttggcgg cattcgcatc catgcacatc gggtctgggc
     2221 ccggtgtttg cggatcgtcc ggaatgcacg tccacccgtt cttccccggt cggagcgttt
     2281 tcattgctcc cgaagcatcg gccgccatga tcgtcgcatc gcgcgcaagc gctgccggag
     2341 ctgcggactc ggcgctcgcg attgggtcct tgctcgcttc agacgccaca ttcttggttt
     2401 ctgcggacgc tgtacccccg tttgcactgc tcctgttgca gccgctcgcg gcaaaagttg
     2461 ctgccgtaag cagcaatatg atcgtgctcc tcatttgccc ctccttggtc aggaaggatc
     2521 gacgaattag cacaattgcc gtttcttcgc atcagtcgcg cttgattcgc tcgccgcact
     2581 ttgccacctg acgcgcatga ccaccgcccg catcgttgag ctcgagcgaa agacgaccca
     2641 gtccggcaag gcaaatgccg gcctttggct tcttgagttt gagcgtcagg aggctcagcg
     2701 ccctgatcca ctcaccggat ggaatggctc gggcgatacg aacacacagg tccgcatcaa
     2761 cttccagacc aaggaagcgg ctgttgctta ttgcgagaag cacgggctt
//
LOCUS       DASRBJ010000260         4352 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_234464,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000260 DASRBJ010000000
VERSION     DASRBJ010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4352
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234464"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            716..1171
                     /locus_tag="VE968_07160"
     CDS             716..1171
                     /locus_tag="VE968_07160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51636.1"
                     /translation="MVMTNELGKTLEMLGRAARAATDEWWLIGSAAVVLHGGHVPHVN
                     DVDLMMSARDADEFLRRAGAESGGVEPSERFQSAVFGIWNTPSVPVEVFGGFKLARGG
                     TWREVSFSTREPINVGNEIVYVPSAAELVRLLHSFGRMKDLERAKLLSG"
     gene            1666..2064
                     /locus_tag="VE968_07165"
     CDS             1666..2064
                     /locus_tag="VE968_07165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51637.1"
                     /translation="MYRLGVRAMVMYEKKRGLSMLPSTFFTAGSFASLAGSAAIVFVV
                     CNAAQSAFNFNPKWLALFVAEAVAIYGTWASGNAHVPSDYFVALLNGCLIFTTAAGGG
                     QVAASAKTIGQPKGRVGEEHGRRRFLTPWF"
     gene            2110..>4352
                     /locus_tag="VE968_07170"
     CDS             2110..>4352
                     /locus_tag="VE968_07170"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HZU51638.1"
                     /translation="MSRYSHDALNLRYAAENAARLFKAFANPTGCGVAPENLRLLRDE
                     HATAGAVLGAIAEAASNAREQDVLVLYFSGHGEREGNDFYLLASDADPSDLAATAVNA
                     VHLRDLLGGCRARGVLVILDCCKSAGLAEVAGGLFTTVGRQDFRLLLSASRTGQMSYE
                     FEEFRGTIFSHHLARVVGGEVPIGDRPGIVYFSDLFEFLAARLAEDLETIGVDPGAQE
                     AVFAGTYARDPRLFILQKVALETLDAEAPRYSRRFVRRAARRAIGAVAAALLVASAGY
                     YYYLDHARYLAPVTSNVDGHDGPYLAVFAGERRVNAFGFPHLLRVTDIPATALGGAGP
                     PTIPEFSSDGDIDRSIENALPTEWRAVLAGWTGDGPRLVSLVRRADGEYDVSDDPPGL
                     AAALDLLGFRLGRDAIPELEYNVSGFVAGRTSAALRQLAGLEPERALDLYEDGMDGEP
                     DNTKGLLQGLGGACPEDAPKILSDNAGSTFDKNLGRSLDVEPDPVRAVWWAAVFRTGC
                     SLSPELFKSVYDHEIYRDNNRDLNVLAYADLHKGAALIAFLQGDLATNAAKIVKRDKQ
                     VYWLDAFETEHRAWSDLRVLNALGAGPGEVSLADLTARDLDKNVKLAAARMAIRLQGI
                     QPRLVSKAASDLWIAAALIDHGWWNGKPVAEAVDDALARSTPYVGSDFGDALSYLLHM
                     IRRRHVVHAIPLVREIELRSRDRPAIVAASRTIEELAPTAGIQAPSTPRTRFFSLGMT
                     RPLRRLPA"
BASE COUNT          806 a         1331 c         1320 g          895 t
ORIGIN      
        1 tcaagacggg ctatctcacc caaggctttc gaacacgccg gagaatcttg cgttggtaat
       61 gtggctcact actcgaaaga tcatctcgtc ttggagcgat aggggccttt ttacagatga
      121 gattcggctg aaccggatct aagctggtca gggcggtcgc actcgaagcc gctccggaac
      181 tcgacgtctt gattatgcga atgacgcgcg cggctgtgag gctttcagta agcgccgcaa
      241 ttagcccatt tttcgacatc gtgagggaaa ttgccggcgt gcttcgactg gattcggaca
      301 agatcgaaga gctagtgcat ggcacatcgc gcacgaggac ttggcacgcc ggtatcagga
      361 gtccttttct acatcacctg actctcaagt ctcacattga tcgcgttccg caaagcctcc
      421 gtggagctcg aatccagttg caacccgtgg gatagctgac cgtcgcgctt tgcatctttt
      481 gacgggcgcc gagtgcaagc aaccggcctc gcatcgattc cgaatgccac cactatctca
      541 acagacggca tagtcctgtg ggatttaaaa agcgggacct gcctttcacg aagcttcgaa
      601 cacgcgagaa aagaatttct ctgcttcaat ggtcggccaa gggcaacgaa ccttcaattt
      661 cgtcggcagc tttcgataga ttgcggagat tagcgagagc cgtcatccgc acacaatggt
      721 gatgaccaac gagctcggga aaacgctcga aatgcttggg cgggccgcgc gggccgccac
      781 ggatgagtgg tggctcattg ggagcgccgc cgtcgttctt cacggtggac acgtgccgca
      841 cgtaaacgac gtagacttga tgatgtccgc gcgggacgcc gatgagttcc ttcgccgcgc
      901 cggtgcggag agcggaggcg tggagccgag cgagcgcttt caatccgcag tgttcggcat
      961 ctggaacacg ccgtccgtgc ccgtggaggt attcggcggg tttaagctcg cgaggggcgg
     1021 cacgtggcga gaagtcagct tctccacgcg tgagccgatc aatgtcggga acgaaatcgt
     1081 ctacgtgccg tccgcagccg agctcgtccg gcttctccac tccttcggta gaatgaaaga
     1141 cttggagcgg gcgaagttgt tgagcgggta acgtctgctt gccaggcgaa agcacacatt
     1201 ggattttgac gacgagccat gccgccttag tcgctaaaaa tggtgggact aaacgtggtg
     1261 ccaggaatgg cccgatgaag aaatcaaatc tttttcaacc gtttagaaat atgagaacct
     1321 cccgcggatc ggttccgctc cgctagcagc tcacgtcgcc gcgctggaac tgcacccttt
     1381 tgagcgatgc cccttcgtgg ccgcgccgag cgtacgcgga cggttattcc tttgaaacgg
     1441 gagctaggtc cggctggagc aaggcgcttc gccgccgtat caccttcaat gtcgacaacc
     1501 ccgacttaaa atatcgactc gaggtgcgtg ccgatcatga agttcaaatg ggataggcgc
     1561 cttgctgttc ggcgcgcgac tgctgagcga aagtataact tcaaccaaga cctacccgca
     1621 tgctggtgaa tcaaaccggc tggtcgcgag ttccatgaag ttatattgta ccgacttggc
     1681 gtccgcgcga tggtaatgta cgagaagaag cgggggcttt cgatgttacc cagtaccttc
     1741 ttcactgccg ggagtttcgc gtcgcttgct ggttcagcgg caattgtctt cgttgtctgc
     1801 aacgccgctc agtccgcgtt caatttcaac cccaagtggc tcgcgctatt cgtcgcggaa
     1861 gcggtggcca tctacggcac atgggcttcc ggcaatgctc acgtgccgag cgactatttc
     1921 gtcgcgctgc tcaatgggtg cctgatcttc acgacggcag ccggcggagg gcaggtcgca
     1981 gcttcggcca aaacgattgg ccagccgaag ggccgagttg gcgaggagca tggtcgaagg
     2041 cgcttcctca cgccttggtt ctgatcttcg atgctcgcgt cggaggccct gaaagtcctc
     2101 tgcatcggag tgagccgtta ttcgcatgac gcgctgaacc tccggtacgc ggcggagaat
     2161 gcggcgaggt tgttcaaggc gtttgccaat ccgaccggct gcggcgtcgc gccggagaac
     2221 ctgcgattgc tccgcgacga acacgcgact gccggcgcgg tgctcggagc gatcgccgag
     2281 gcagcttcca acgcgcgcga gcaggatgtc ctcgtcctat atttttctgg ccacggcgag
     2341 cgcgagggca atgatttcta tctgcttgct tccgatgccg acccgtccga tcttgcagca
     2401 accgccgtga atgcggtcca tcttcgcgac ctcctcggcg gttgccgagc gcgcggcgtc
     2461 ctcgtcattc tcgactgctg caagagcgcg ggcctggccg aagtcgccgg aggcctattc
     2521 accaccgtcg gccgccaaga tttccggctg ctcctcagcg catcgcgcac gggccagatg
     2581 tcctatgaat tcgaggagtt tcgcgggacg atcttcagcc accatcttgc ccgcgtggtt
     2641 ggcggggagg tcccgatcgg tgaccggcca gggatcgtct atttcagcga ccttttcgaa
     2701 ttcctcgccg cacgcctcgc agaggatctt gagacgatcg gcgtcgaccc cggtgctcag
     2761 gaagcggttt tcgcaggtac ttacgcgcgc gacccgcgcc tattcatact gcagaaggtc
     2821 gcgctcgaaa cgctcgacgc agaggcgccg cgatactcgc gccggtttgt tcgccgcgcc
     2881 gcgaggcgcg cgatcggcgc ggtcgctgcc gctctcctcg tcgcttccgc gggttattat
     2941 tactatcttg accacgcccg ctatctggca ccagtcacct ccaacgttga cgggcacgac
     3001 gggccctacc tcgcagtgtt cgccggcgag cggcgggtga atgcattcgg atttccgcac
     3061 ctcctgcgcg tgaccgatat ccccgccacg gcgcttggcg gcgcgggacc gccgacaatt
     3121 cccgaattct cgtccgacgg cgatattgat cgttcgatcg agaacgcgtt gcccacggaa
     3181 tggcgcgcag tgctcgcggg ctggaccggc gacgggcctc gcctcgtttc gctcgtccgc
     3241 cgcgcggacg gcgaatatga cgtgagcgac gatccgcccg gccttgcggc agcattagat
     3301 ttgcttggat tccggctcgg ccgggacgcc attcccgaac tcgaatataa cgtgtcgggg
     3361 ttcgtggcgg gacgaacgtc ggccgcgctg aggcagcttg ccgggctcga gcccgagcgc
     3421 gccctcgacc tttacgaaga cggcatggat ggcgagcccg acaacaccaa ggggctcctt
     3481 cagggccttg gcggagcatg cccggaagat gcccccaaga tcctttccga caatgccggc
     3541 tcgaccttcg acaagaacct cgggcgatcg cttgacgtcg agcccgaccc ggtgcgcgcc
     3601 gtttggtggg ccgccgtgtt tcgcacggga tgttcacttt cgccggaact cttcaagtcc
     3661 gtctacgatc atgaaatcta ccgcgacaac aatcgcgatc tcaatgtgct agcctatgcc
     3721 gatctccaca agggtgcggc gctcatcgcc tttcttcaag gcgatcttgc cacgaatgcg
     3781 gccaaaattg tgaagcgcga caagcaggtc tattggctcg atgcgttcga gaccgagcac
     3841 cgggcctggt cggaccttcg cgtcttgaat gcgctcggcg ccggaccggg cgaggtcagc
     3901 ctggccgatc tgaccgcgcg ggacctcgac aagaacgtca agctcgccgc ggctcggatg
     3961 gcgatccgcc tgcagggcat ccagcctcgg ctcgtttcga aggcagcgtc ggatctctgg
     4021 atcgccgctg ccctcatcga ccacggctgg tggaacggca agccagtcgc ggaggccgtc
     4081 gatgatgcgc tggctcgctc gacaccgtat gtcggatcgg actttggcga tgcccttagc
     4141 tatctccttc acatgattcg aaggcggcac gtggtccacg cgattccgct ggtgcgtgag
     4201 attgaactgc gctcgcgtga ccgcccggca atcgtcgctg cctcacgaac gatcgaggaa
     4261 ctcgcgccaa cggctggcat acaagctccc tcaacgccga ggactcgctt cttctcgctt
     4321 ggcatgaccc gaccacttcg ccgacttcct gc
//
LOCUS       DASRBJ010000261         3480 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_26902,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000261 DASRBJ010000000
VERSION     DASRBJ010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3480
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26902"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(52..1044)
                     /locus_tag="VE968_07175"
     CDS             complement(52..1044)
                     /locus_tag="VE968_07175"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HZU51639.1"
                     /translation="MDGDSQSRASQADVSRTGGMQEIRGSPVWDIDYRAIGHSIVAAE
                     HLSFHRAALVLGTDQSVVSRKIRALEDQLGVSLFERSRTGVRLTRAGKDFIRQAKSAL
                     GELDYAVKSARSAGSGYRGHLTIGFFCSLATGFLRELITAFARVHRTVLIDMSHGAPR
                     DHIQQLRDRTMDIAFFTGLPDLADCEVELLWHERVFCVLPNDHPLASVDTIDWADIRG
                     ESFIVSREEPGPEIHEYLIKRLATLGFHPQVRRLSVCRESLIHLVSMGFGITLTSEST
                     IATPFGGVVFKQIKGDEDQLPCAGAWLPGNDNPALRRFVSLARALKRARATAAT"
     gene            complement(1118..1342)
                     /locus_tag="VE968_07180"
     CDS             complement(1118..1342)
                     /locus_tag="VE968_07180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51640.1"
                     /translation="MNNVGFWTRTQDFVRHGGFGGYRFGVDSTARDGKSAGVNNTIAT
                     LARRASMMLQDFLIANRAALLEPTNAKSDA"
     gene            complement(1661..2497)
                     /locus_tag="VE968_07185"
     CDS             complement(1661..2497)
                     /locus_tag="VE968_07185"
                     /EC_number="1.-.-.-"
                     /EC_number="1.6.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003162621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HZU51641.1"
                     /translation="MKVLLVFAHPEPRSLSAALRDVAVGELEAQGHEVRVSDLYAMGW
                     KSEVDRADFPKLGADARMIVTAASRDAFYANALTEDVKAEVDKLLWADVLILQFPFWW
                     FAMPAILKGWVDRVFAYGFAYGVGEHSDRRWGDRYGEGTLAGRRAMLIVTAGGWEEHY
                     SARGVNGPIDDLLFPINHGMLYYPGYDVLPPFVVYRVDRLDESGFDPIAGRLRERMRT
                     LATTPPIPYRKQNGGDYLIPSMQLRPGLEDPGASGFALHKRADPGRRLSRGALAASQA
                     QS"
     gene            2624..>3480
                     /locus_tag="VE968_07190"
     CDS             2624..>3480
                     /locus_tag="VE968_07190"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HZU51642.1"
                     /translation="MRSFVRVAERGNLSAVARELGVGQSTVTRHLRELEEALGVPLLS
                     RTTRRVTMTQEGSRYYANCVQILRLVDQASEEARSTRGAPAGTIRISCTAALGVMHVS
                     RLVFAFQDVYPEIAVDLSLTDERIDLVREGVDIALRLGPLTDSSMKLRPLGQSQRLLV
                     AAPHYLKARGTPSRPQDLVAHEGIRMSNIAGSDLLVLEGRCERHAIPFGGRLRVDHGL
                     AAREALAAGRGIAPAHIWLVEDLIAAGRLTTVLPAYAPPPVPLNMLIVPERAGIARVR
                     LLVDFLAEQ"
BASE COUNT          702 a         1104 c         1018 g          656 t
ORIGIN      
        1 tcccgcctag agagctgtgc agaagcgcag acatgcgact cggcctaatg attacgtcgc
       61 ggccgtggcg cgtgctctct tcaatgccct ggccaagctg acgaagcgcc gcaaggcagg
      121 attgtcgtta cctggcaacc aagcgcctgc gcatggcagt tggtcctcat cccccttgat
      181 ctgtttgaat acgacgcctc caaatggcgt cgcgatcgtc gattcgcttg tcagcgttat
      241 gccgaacccc atcgaaacca aatggatcaa actttccctg caaacagaga gacgcctcac
      301 ttgtgggtgg aagccgagcg tcgccagccg tttgataagg tactcgtgaa tctcgggacc
      361 cggttcctct cggctgacga taaaactctc cccacgaata tctgcccaat caatagtgtc
      421 aaccgacgcg agcggatgat cattcgggag gacgcaaaag acgcgctcat gccacagaag
      481 ttcgacctcg cagtctgcca agtctggcag cccggtgaag aaggcgatgt ccatcgttct
      541 gtcacgcaac tgctggatat ggtcacgcgg agctccatgg ctcatatcga tgagcaccgt
      601 cctatgaacg cgtgcaaacg ctgttatcag ttcccgaagg aaacctgtcg ccagagaaca
      661 gaaaaagccg atcgtaagat gccctcgata gccgctaccg gcgcttcgtg ccgatttgac
      721 cgcgtaatcg agctcaccca gtgcggactt cgcctgacgt atgaagtcct tgccggcgcg
      781 cgtgagccga acgccagttc ggctccgctc gaacaacgag acacctaatt gatcctccaa
      841 agcgcggatc ttccggctaa ccacggattg atcggtcccg agtaccaaag ccgctcgatg
      901 aaagctgaga tgctcggctg cgacgatcga gtgccctatc gcacgatagt cgatgtccca
      961 tactgggctc ccacgtattt cttgcatacc gccggtgcga ctgacatcgg cctgcgacgc
     1021 tctcgattga ctatcaccgt ccatgggaag tcccggcagc tagttgcgag cgacatcgcc
     1081 cgacttcacg caaagcgcct ccactctgga aggctgccta cgcatccgat tttgcattcg
     1141 ttggttccag cagagcggct ctgttggcaa tcaggaagtc ttgcaacatc atggatgcgc
     1201 ggcgcgccaa tgtcgctatc gtgttattga cgccagcaga ctttccgtcg cgcgcagtac
     1261 tgtcaacgcc aaaccggtag ccgccgaagc ccccgtgcct tacaaaatct tgagtacgtg
     1321 tccaaaatcc gacgttattc atggcatcag cggaacgttg atcgcttttc tctttatgac
     1381 gcccgcggac ggccgcatcg attcggagaa atgccttcca aggctgctcg cagcgaatgc
     1441 tgactcagag gctgaatgat cttcagcgaa acggttacat cagactcccc gtgttgccga
     1501 ccaagcctcg aagcgtcgag tacagtctga gtccgctcgg gcaatcgctt tttgaaaagc
     1561 ttgatcttgt gctcggttgg gctagggaca accatcaagc cgttctggaa gcacgtcgca
     1621 cgtacgacag aaatggtagt tcgccatcga tcggagccag ctaagactgg gcttgcgatg
     1681 ccgccagtgc cccacgcgac agacgacgcc cggggtcggc gcgcttatgg agagcgaacc
     1741 cgctggcacc cggatcctcg aggccgggac ggagctgcat gctcgggatc agatagtccc
     1801 cgccattctg cttccggtaa ggaatcggcg gggtcgtcgc caacgtgcgc atcctctccc
     1861 gcaagcgccc cgcgatcggg tcgaagccac tctcgtcgag gcggtccacg cgatagacca
     1921 cgaacggcgg gagaacgtcg tagcccgggt agtagagcat gccgtgatta atcgggaaaa
     1981 gcaggtcgtc gatcgggcca ttgacgccgc gcgctgagta gtgctcctcc cagcctcccg
     2041 ccgtcacgat cagcatcgca cgcctgccgg cgagcgtgcc ttctccatag cggtcgcccc
     2101 agcgccgatc gctgtgctcg ccgacaccat aggcaaaccc ataggcgaac acccggtcga
     2161 cccaaccttt gaggatcgcg ggcatggcga accaccagaa cggaaactgg aggatcaaca
     2221 cgtcggccca cagcagcttg tcgacctccg ccttgacgtc ttcggtgagc gcgttggcat
     2281 agaaggcatc gcgggacgct gcggtcacga tcattctcgc atcggcaccg agcttcggaa
     2341 aatcggctcg atcgacctca gatttccagc ccatggcata gaggtcggat acgcgcacct
     2401 cgtgaccctg ggcttcgagc tccccaacgg cgacgtcacg cagagccgcg ctcagcgagc
     2461 gaggctcagg atgggcgaac acaagcagga ctttcatcgt cagcaccccg ttgagttgaa
     2521 ccttcggccc aacaggtggc aaatggagcg ctcatcgagt agatagtggg aatggataag
     2581 attatgccga aaaatggata aaccagagat cacgctcgaa cgcatgcgca gcttcgtgcg
     2641 cgttgccgag cgagggaacc tgtcggcggt cgcgcgagag ctgggcgtcg gccagtcgac
     2701 ggtgacccgg catctgcgcg aactcgagga ggcgctcggc gtgccgttgc tcagccggac
     2761 gacgcgccgc gtgaccatga cccaggaagg cagccgctac tatgcgaact gcgtgcagat
     2821 tctccgcctg gtggaccagg cgagcgaaga ggcgcgcagt acccgtggcg cgccggccgg
     2881 cacgatccgc atctcctgca cggccgcgct cggcgtcatg catgtcagcc ggctcgtctt
     2941 tgccttccag gacgtctatc cggagatagc ggtcgatctc agccttaccg acgagcgcat
     3001 tgatcttgtc cgggaaggcg tcgatatcgc gctgcgcctg gggccgctca ccgacagctc
     3061 gatgaagctc cggcccctcg gccagtcgca gcggctactt gtcgcggcgc cgcactatct
     3121 caaggcgcgc ggaacccctt cgcgtcccca ggacctcgtc gcccacgaag gcatcaggat
     3181 gtccaacatt gccggcagcg acctgctcgt gctcgaagga cggtgcgaac gccacgccat
     3241 accgttcggc ggtcgcttgc gagtggacca tggcctcgcg gcccgcgagg cacttgcggc
     3301 cggccgcggt atcgctcccg ctcatatctg gctcgtggaa gatcttatcg cagccggtcg
     3361 gttgacgacc gtgctgccgg cctatgcgcc gcctcccgtc ccgctcaaca tgctgatcgt
     3421 gccggagcgc gcgggcattg caagggttcg gctgctggtc gattttctcg ccgagcagat
//
LOCUS       DASRBJ010000262         2588 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_543003,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000262 DASRBJ010000000
VERSION     DASRBJ010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_543003"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..678
                     /locus_tag="VE968_07195"
     CDS             <1..678
                     /locus_tag="VE968_07195"
                     /inference="COORDINATES: protein motif:HMM:NF013630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HZU51643.1"
                     /translation="IFLAELEGLYVDDDPAQGVIEGPVFTHPDLKIQFRVPPGYLMSN
                     ASDAVTITGSAGKAQFRQGPPDLDLSIAYAFRLLTRGQREIGYPAPRHLVINGMRVAA
                     TTTRVETDSGLIDASVVAYQWDPRRVYYFVMLTPGGYGIGPFVPMINSLRRITPAEAA
                     AIRPRVIHVETVREGDTVQSLSSRMAYPDFRLERFLSLNGLSANASLVPGERVKLVVY
                     GARRSSN"
     gene            complement(675..857)
                     /locus_tag="VE968_07200"
     CDS             complement(675..857)
                     /locus_tag="VE968_07200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HZU51644.1"
                     /translation="MIAIRKFLRTLGADQRGATAIEYGLICGLIVVAMIAGLQQLGGG
                     VGGKWGTLEQEIQNAG"
     gene            complement(943..1713)
                     /locus_tag="VE968_07205"
     CDS             complement(943..1713)
                     /locus_tag="VE968_07205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HZU51645.1"
                     /translation="MAELFDMRARALRRDRAAQRPELFLHERAFADCLDRLDLVGRRF
                     ERALLIGCPDEEWPRRLGKYSKEVEVRDPGPRFAAKAHGSVLIEDAWVPAEQAFDLVL
                     ALGTLDSVNELPVALRLVRHGMRRDALFLGAFPGGENLPRLRSAMRAADAVTGFAAPH
                     VHPRIEASAVAPLLVEAGFVQPVIDVDRVPVSYASLGSLVGDLRAMAATNILSARPRF
                     MGRLSWQAAQSAFTSTAQNQRTIETFEIIHFAAWTQTG"
     gene            1956..2222
                     /gene="grxC"
                     /locus_tag="VE968_07210"
     CDS             1956..2222
                     /gene="grxC"
                     /locus_tag="VE968_07210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008602657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HZU51646.1"
                     /translation="MAAIEIYTKSFCPYCWRAKMLLESKGATFREISVDVGGPEKDKM
                     VDRARGRTTVPQIFIGDIHIGGCDDLIALDREGKLDPLIAERAR"
     gene            2219..>2588
                     /locus_tag="VE968_07215"
     CDS             2219..>2588
                     /locus_tag="VE968_07215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013833741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HZU51647.1"
                     /translation="MTRIALFQSTTGTEPSASARRLTEAVAEAASGGAEILFTPEMSG
                     LLDRDSARASKNLRSSDDDEVLSAVRSAAARRRIWVHIGSLAVVVDGGKIANRSFVID
                     REGEIRATYDKLHLFDVDLPT"
BASE COUNT          524 a          783 c          762 g          519 t
ORIGIN      
        1 atcttccttg ccgagcttga aggcttgtac gtcgacgatg atccggcgca gggggtaatc
       61 gaaggcccgg tttttaccca ccccgacctc aagatccagt tccgtgttcc ccccggctat
      121 ctcatgtcca atgcgagcga cgccgtcacc atcaccggat ccgcaggcaa agcccaattc
      181 cgacaagggc ctccggatct ggatctatcg atcgcctacg cttttcgtct gttgacgaga
      241 ggccagcgag agatcgggta tccagctccg cggcacttgg tcatcaacgg aatgcgcgtg
      301 gcggcaacaa ccacgcgggt tgagaccgat tccggtctca tcgatgcgag cgttgttgcc
      361 taccagtggg atcctcggcg cgtctattat ttcgtgatgc tgacgcccgg cggctatggg
      421 attggtccat tcgtgccgat gatcaattct ctccggcgga ttacgccggc cgaggctgcc
      481 gcgatccgtc cgcgagtcat ccatgtggag acggtccgag agggcgacac ggtgcagtcg
      541 cttagtagtc ggatggctta tcccgacttc aggcttgaac gattcctctc gctgaatggc
      601 ctttcagcga acgcttcact cgtgcctggc gaaagggtca agctcgtcgt ttacggcgct
      661 cggcgaagct cgaactagcc agcgttctgg atttcctgct cgagcgtacc ccacttgccg
      721 ccgacgcccc cgccaagctg ttgaagcccg gcgatcatcg cgacgacaat caggccgcat
      781 atgagcccgt attcgatcgc agttgctccg cgctggtcgg cgccgagcgt gcgcaaaaac
      841 ttccggatag cgatcacgcc accctcctct ggtccacgtc cacacaatgg gtgtaaccga
      901 gcttcagtta acaactctta ccttgcgacg gttaacgccg cttcagcctg tttgcgtcca
      961 tgcggcgaag tgaatgattt cgaacgtctc gatcgttcgt tggttttggg cggttgatgt
     1021 gaaggcgctt tgtgctgctt gccaactcag cctgcccatg aaccgcggcc tcgctgaaag
     1081 aatgttcgtc gccgccatcg cacgaagatc accaacgagg ctaccgagtg aagcatagga
     1141 taccggcacc cggtcaacat cgattacggg ttgcacaaat ccagcttcca cgaggagagg
     1201 cgcaaccgca gacgcctcga tccgcggatg cacgtgagga gcggcgaaac ccgtgacggc
     1261 atccgcagcc ctcattgcac ttcgcagccg aggcagattt tcgccgccag ggaacgcacc
     1321 gagaaagagc gcgtctcggc gcatcccatg ccggacgagg cgaagggcaa cgggaagctc
     1381 attcacgcta tcaagcgtcc ccaaggcaag cacgaggtcg aacgcctgct ccgctgggac
     1441 ccacgcatcc tcgatcagaa cgctgccgtg agccttggcc gcgaatcgcg gtccagggtc
     1501 acggacctcg acctccttgc tgtatttgcc gagacgccga ggccattcct cgtcgggaca
     1561 gccgattaac agtgctcgct cgaaacggcg cccgacgagg tcaagccggt cgaggcaatc
     1621 cgcaaatgct cgctcatgaa ggaaaagctc aggacgctgc gctgcgcgat cgcggcggag
     1681 cgcacgagcg cgcatgtcga acagctctgc caccaagcgc ttgtgctcgg caaagctggc
     1741 atcgacaagt agatcttccg cttggcgcga ccgccaaaag atccgcgcga cgcggggcgc
     1801 ttcccctttt gctcctggct gcctgggcgc aaggattgtt tgagacagat gccgacgcgg
     1861 tcgcccttcg cgccggcatt ttgcagcaat gacgcacgct taggcagttg atgcgttgag
     1921 cgtgatgcct aagttgatag ccgaaaggat gctcggtggc ggcgatcgaa atctacacaa
     1981 agtctttttg cccttattgc tggcgggcga agatgctgct cgaatccaaa ggggcgacgt
     2041 tcagggagat ctccgtcgat gttggaggtc ccgaaaagga taaaatggtg gaccgcgcgc
     2101 gcggaaggac gacggttccc cagattttca ttggcgacat tcatatcggt ggctgcgatg
     2161 atctgattgc gcttgaccgc gagggcaaac tcgatccctt gattgcggaa cgtgcccggt
     2221 gactcgaata gcgctctttc aatcaacgac agggactgag ccttccgcca gcgcccgacg
     2281 gctgaccgag gcagtcgccg aggcggcgtc cggaggcgcc gaaatattgt ttacaccaga
     2341 aatgtccgga ttgctcgacc gcgattccgc gcgcgcttca aagaacctga gatcaagcga
     2401 tgacgatgaa gtcctgtccg ctgtaagaag cgcagccgct cggcgtcgga tctgggtcca
     2461 cattggatcg ctcgccgttg tcgtcgatgg tggaaaaatc gccaatcgca gctttgtgat
     2521 cgaccgcgaa ggcgaaattc gagcgacata cgacaagctc cacctgtttg atgttgatct
     2581 tccgaccg
//
LOCUS       DASRBJ010000263         8888 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_27299,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000263 DASRBJ010000000
VERSION     DASRBJ010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8888
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27299"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(71..604)
                     /locus_tag="VE968_07220"
     CDS             complement(71..604)
                     /locus_tag="VE968_07220"
                     /inference="COORDINATES: protein motif:HMM:NF023249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3341 domain-containing protein"
                     /protein_id="HZU51648.1"
                     /translation="MAEPVLGLLAEFGTADALLEATKRARREGFHNIDAFSPYPIDGM
                     SEVLSLKSDHRVGWITLAGGLFGFFGMLCIQLFVNWDYPIEVGNRPLFAWPAFFVVDF
                     ELMILCAVLFAVVGMFVLIGLPKLYHPLFGVPRFGLASEDKFFLYIDARDPKFDPGQT
                     RSFLGSLGAWNVEPVRP"
     gene            complement(597..1952)
                     /gene="nrfD"
                     /locus_tag="VE968_07225"
     CDS             complement(597..1952)
                     /gene="nrfD"
                     /locus_tag="VE968_07225"
                     /inference="COORDINATES: protein motif:HMM:NF015851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NrfD/PsrC family molybdoenzyme membrane anchor
                     subunit"
                     /protein_id="HZU51649.1"
                     /translation="MASRTPALPLNQSLRDITTDVARVPLHMPARVPWLIALILSLAL
                     LALFLASITYLFARGVGIWGLNIPVNWAFAIHLYVWWLGLGHAGTLISAMLLLMGQDW
                     RNSLNRFAEAMTVCAVICAGMEPIIHLGRPWFLYWMFPYPATMAVWPQFRSPLEWDVW
                     AVLTYLIVSILFWYIGLVPDLATVRDRARKRGWQVFFGIFALGWRGSARHWAVWNKTY
                     RTIAAIAVPLVVSVHSEVSLLFAAGQIPGWHSTIFPPYFVLGAAFSGFAMVAMIAIVM
                     RHTFALGEIVTERHLDVLAKVLLAMGLMTAYGYFFEVFDAYYSGETHEIATVHDRFFG
                     EYAWSYWGAVVCNFIPLQGLWFDRVRRSPVLLFLISTSAVVGMWLERYMILVTSLYKD
                     FLPSSFGHYTPSFWDWSTYIGMLGLFMTPFLLFVRFLPSISIFEDKEVLAREKEEAAH
                     G"
     gene            complement(1942..4788)
                     /locus_tag="VE968_07230"
     CDS             complement(1942..4788)
                     /locus_tag="VE968_07230"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAT-variant-translocated molybdopterin
                     oxidoreductase"
                     /protein_id="HZU51650.1"
                     /translation="MSGKRVWRSLEEYQRSDAFGEMLKAEFPSIFDLWTVDRRQLLEV
                     MGASLALAGMTGCKPVRSDDAVPFVNRPEGFIEGRTGHYATAVLFEGYAQPVLATTSG
                     GRPIKLEGNRDHPSFGGGSTPFMQAAILDLYDPDRSQAPLFNGKPASWADFDGQMARW
                     RDSWAATKGAGLRLLLGPTTSPTMLRQIAELRTMLPLAQVHLFDPFGGFDRVTPSGLR
                     PIIQDADVIVSLDDDLLGPGPMQATNARAWGDRHGDIPLRERMRLLVAETTPTQTGSK
                     ADRRLGVAPTRLPSLAQAIATGVGVSSDGVRLTQKELAWTKEAARALIQARGRSLFVV
                     GRFAPPQLHSLAIEINRALGNLGRTCKLATPVGLTSQSTEPFLDLVRDIGQRRVSTLF
                     VLGANPLYQAPGNLDFAKLYATVPVTVHAGLHVDETGFQSKWHLPLPHALEDWSDARS
                     PDATATIMQPVVRPIYDSRSAHEIIASLTSDQPASSKDAVRQTWAAKLPDDASWNGVL
                     KSGFVPEEPQPAPTEPPITNTAIDVPRVGDGDFEILFRPDPTIHDGSFANNGWLQELP
                     KPLFKTTWENVVALSPADARARGITSGDLVAVEANGRRLTGPAWVLPGQPRRVVTLFL
                     GYGRSHAGRIGNGLGYDAFAMRDALRPWNATGKISKTGARTTLATTQEHHMLDAEGEG
                     VVRTVTPQHPSALREGDANQDSFYPPWPGDKPAWGMVIDLDRCIGCNACAVACQAENN
                     VPVVGKDQVARGREMAWLRVDRYFAGDPEEPETYFQPVPCMHCEQAPCEMGCPVHATV
                     HSPEGLNLMVYNRCIGTRTCSSYCPYKVRRFNWFDYTTDAPSPTEAQRNPDVTVRGRG
                     VMEKCTYCIQRIEAATVQADIENRPIVDGEVMTACQQACPAKAITFGNLADGGSAVRK
                     QRSSERNYALLAEQGTRPRTTYLARLEVEPGDGE"
     gene            complement(4785..5444)
                     /locus_tag="VE968_07235"
     CDS             complement(4785..5444)
                     /locus_tag="VE968_07235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008599796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HZU51651.1"
                     /translation="MPQVFSRTADTWLRAVALGALVVTLAIFLGALAFARSQYWDVVA
                     RTPLQPVPFSHKHHAGELGIDCRYCHTSVETSANAGFPATHVCMTCHSQLWTNAEMLA
                     PVRQSLAENRPIDWHRVARVPDYVYFRHDIHIAKGIACVECHGRIDRMPLTYRAKAFE
                     MKFCLDCHRNPAPNLRPRDEVYNFDWKPPADHEALGRKLMAIYHIKSPNQLTSCGTCH
                     R"
     gene            5680..6111
                     /locus_tag="VE968_07240"
     CDS             5680..6111
                     /locus_tag="VE968_07240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010405634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1622 domain-containing protein"
                     /protein_id="HZU51652.1"
                     /translation="MIRVKKRIGRPGRRIPVNMLAQVEQFAVGSAHIVTRIVELTGIA
                     IIAVGAFATLILFLYRLATLADRDEAVADFRSSLGRTILLGLEFLVAADIINTVAVEP
                     TLKSVAVLAGIVAIRTFLSFSLETEIEGEWPWQRGRRRREV"
     gene            6072..6929
                     /locus_tag="VE968_07245"
     CDS             6072..6929
                     /locus_tag="VE968_07245"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HZU51653.1"
                     /translation="MAVATRATPARGIEMIDAHLRRLRSRETVSHAEEDAIRRMVSEV
                     KRFPFNAVIARAGEPLDHSVIVTEGWVARVKQPQAYERQITALCIAGDFADLHGLSLR
                     ELDHDLVALTECAVAIVPHERLEAVIESSGHLARLYRLMSNIDSAMQREWATSLGRRS
                     RAAHLAHLFCELLSRLEIVGLAAGTTYEFPLTQNQLADCLGATPVHVNRVLQQLRATG
                     MIRLQHRSLAITNLAALSALAKFDASYLFIDARHRPSIMVDGEIRHLAKHSRADRRSK
                     SVRDIRAQP"
     gene            complement(6926..7702)
                     /locus_tag="VE968_07250"
     CDS             complement(6926..7702)
                     /locus_tag="VE968_07250"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HZU51654.1"
                     /translation="MADGERIRSGAELVDPGSILVHPTRDELPDLPIFNGVEEPLVET
                     LLASSSTRQYRAGGLIVRQGEQAPDLHVVLRGIVDLTLLSRKSECGVLLLSSKDLLLP
                     ATTLFHEPALVSARALTNTKILLLTGGAVEAALNRSTAFAANLMKPMSGQWRMAVRNI
                     LDLNCRSAAQRVAAFLLRIADLQPDTPAPVLPIAKRHLAVRLGITAETLSRMLQTVAD
                     HGLYLRGRTIVIRDRAAIEEFCGPDPYPQKDERILDVFAL"
     gene            complement(7845..8177)
                     /locus_tag="VE968_07255"
     CDS             complement(7845..8177)
                     /locus_tag="VE968_07255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2218 domain-containing protein"
                     /protein_id="HZU51655.1"
                     /translation="MTIVSCANISSSAFVPTENGSRYLQQLCKHWSHSLNVEFTPEYG
                     RVIFPKNARGSDYPGDAIVTFNAVEGGLNILVDASSDAQLEAMKSVVERHLDRFAFRE
                     NGLPFDWH"
     gene            8264..8872
                     /locus_tag="VE968_07260"
     CDS             8264..8872
                     /locus_tag="VE968_07260"
                     /inference="COORDINATES: protein motif:HMM:NF013460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HZU51656.1"
                     /translation="MNDGSTFNTATRIAAGDDKTNYDNVAISLHWATAILVLFQFASA
                     ETWDWLGKSTRETMQSLHISFGVLLTAVIIARIVWRLIPGHQRPSIVSGWVEVASKAV
                     HYLLYALLVAQACLGFAFRWAQGHPVSFFGLFGFPTPFGVVDKATRHTIHDLHEKVGW
                     AIIIIALGHALAALYHHYRLHDRVLGRMLPLARRSEERSAAR"
BASE COUNT         1849 a         2599 c         2720 g         1720 t
ORIGIN      
        1 ttctggtcgc tcatcgtgag gttctgatgg cagccggtga atgccagtgc ggccatgagc
       61 agcacccttc tcatggccgc accggctcga cgttccaggc tccaagactt ccgaggaagc
      121 tccttgtctg cccggggtcg aacttcggat cgcgcgcgtc gatgtagagg aagaacttgt
      181 cttccgaggc gaggccaaat cgaggcacgc cgaacaatgg atggtagagt ttaggtaagc
      241 cgatcagaac aaacatgcct acgaccgcga aaagcaccgc gcaaaggatc atcaattcga
      301 aatcgacgac gaagaatgca ggccacgcga aaagggggcg gtttccgact tcgatcgggt
      361 aatcccagtt cacgaaaagc tggatgcaca gcatcccaaa gaagccgaac agcccaccgg
      421 caagtgtaat ccagccgacg cggtgatcgc tctttagcga gagaacctcg ctcatcccgt
      481 cgatcggata gggactgaac gcatcgatgt tgtggaagcc ttcgcggcgt gcgcgcttcg
      541 tcgcctcgag gagcgcatcc gcggttccaa attccgcgag aagaccaagc acgggctcag
      601 ccatgagcgg cctcttcttt ctcgcgcgcg agcacttcct tgtcttcgaa gatagagatc
      661 gatggcagga agcgaacgaa caggaggaac ggcgtcatga acagcccgag cattccgata
      721 taggtgctcc agtcccagaa gctcggtgtg tagtgtccga acgaggaggg aaggaaatcc
      781 ttgtacaggc tcgtgacgag gatcatgtag cgctcgagcc acattccaac gaccgccgag
      841 gtgctgatca ggaatagcag aaccggactt cgccggactc ggtcgaacca cagaccttga
      901 agtgggatga agttgcagac gactgcgccc cagtagctcc acgcatattc gccaaagaag
      961 cggtcgtgga cggtcgcgat ctcgtgggtc tcgcccgagt agtaagcgtc aaagacctcg
     1021 aaaaaataac cgtaggcggt catcaagccc atcgcgagca ggacttttgc aagtacgtcg
     1081 aggtgacgct ccgtcacgat ctcgccgagc gcgaacgtat gccgcatcac gatcgcgatc
     1141 attgcgacca ttgcgaaacc tgagaaggcg gcaccaagga cgaaataggg cgggaaaatc
     1201 gtcgaatgcc agccgggaat ctggccagca gcgaacaaca gggagacttc gctgtgaacg
     1261 gaaacgacga gcggcacagc aatcgcggca atggttcggt acgtcttgtt ccacaccgcc
     1321 cagtgacgcg cggaacctcg ccagccgagc gcgaatatgc cgaaaaacac ctgccagccc
     1381 cgctttcgcg cgcggtcgcg aacagtggcg agatcaggta ccagcccgat gtaccagaag
     1441 agaatcgaga cgataaggta agtgagaacc gcccagacgt cccactcgag cgggcttcgg
     1501 aattgcggcc ataccgccat cgtcgccgga taggggaaca tccagtagag aaaccacggt
     1561 cgaccgagat gaatgatcgg ttccattccc gcgcagatca cggcgcagac cgtcattgct
     1621 tccgcgaacc gattgaggct gttgcgccaa tcctggccca tcaacagcaa cattgctgat
     1681 atgagcgtgc cggcgtggcc aagtccgagc caccatacat agaggtgtat ggcaaaggcc
     1741 cagttcaccg ggatgttgag gccccagatg ccgacgcctc gcgcgaacag gtaggtgatg
     1801 gaggcaagga agagcgcaag aagggcgaga ctgaggataa gcgctatgag ccaaggcacg
     1861 cgtgcgggca tgtgcagcgg cacgcgcgca acatccgtcg taatgtcgcg cagcgactga
     1921 ttgagaggga gtgctggagt tctactcgcc atcgcccggt tccacctcga gccgcgcgag
     1981 ataggtcgtt cgtggacgcg tgccttgctc ggcgagaagc gcatagttgc gctcgctcga
     2041 gcgctgcttg cggacggcgc tgccaccgtc agcgagattg ccgaaggtaa tcgcctttgc
     2101 gggacatgcc tgctggcagg ccgtcatgac ttcgccgtcg acgatggggc gattctcaat
     2161 gtccgcttga acagttgcag cctcgatgcg ctggatgcag taggtacact tttccatgac
     2221 accgcggccg cgaacggtga cgtctgggtt ccgctgcgct tcggtcggac ttggtgcgtc
     2281 ggtcgtatag tcgaaccagt tgaaccgccg aaccttgtag ggacagtagc ttgagcaggt
     2341 cctcgtcccg atgcaccggt tgtaaaccat gaggttcagt ccctcgggac tgtgaaccgt
     2401 cgcatgcacg gggcaaccca tttcacaagg tgcctgctcg caatgcatgc acggcacggg
     2461 ctggaaatag gtctcgggtt cctcgggatc gccggcaaaa taacggtcga cacggagcca
     2521 ggccatctca cggccgcggg ccacctggtc cttgccgaca acggggacat tgttctcagc
     2581 ctggcacgca acggcgcacg cgttgcagcc gatgcagcgg tcgaggtcga tcaccattcc
     2641 ccaagcgggc ttgtcgcccg gccacggcgg atagaagctg tcttggttcg catctccttc
     2701 gcgaagcgcc gagggatgct gcggagtgac cgttcggaca acgccttcgc cctcggcatc
     2761 gagcatgtga tgttcctgcg ttgttgcaag cgtcgtccgc gctccggtct tgctgatctt
     2821 cccggtcgcg ttccacggcc tcagcgcgtc gcgcattgca aacgcgtcat aaccaagtcc
     2881 gttaccgatc cttcccgcgt ggctccggcc gtagccgagg aacagagtca cgacacgacg
     2941 cggctgaccg ggaagtaccc aggcaggccc cgttagacgt cgtccgttgg cctcgacagc
     3001 aacaagatcg ccgctcgtta tccctctcgc gcgcgcgtcg gcaggactta gggcgacgac
     3061 attctcccat gtcgtcttga acagcggctt gggaagttcc tggagccagc cattattggc
     3121 aaagctgccg tcgtggattg tcgggtcggg gcggaacagg atctcgaagt cgccgtcacc
     3181 aacacgaggc acatcgattg ctgtgttggt gatcggcggc tctgttggtg ctggctgtgg
     3241 ttcttctggc acgaacccgc tcttgagcac gccgttccac gaggcatcgt cggggagctt
     3301 ggctgcccat gtctggcgga ccgcatcctt tgacgaagcc ggttggtcgg aagtgaggct
     3361 ggcgatgatc tcgtgggccg accggctgtc gtaaattggc cgcacgacgg gctgcatgat
     3421 cgttgcagtc gcgtcgggcg aacgcgcgtc actccagtct tcaagtgcat gcggcaaggg
     3481 gagatgccac ttgctttgaa aacccgtttc atcgacgtgc aagccggcat gcaccgtaac
     3541 tggaaccgtc gcatagagct tggcgaagtc caaattgccg ggtgcctgat aaagagggtt
     3601 cgcgccgagc acgaacaatg tcgaaacgcg gcgctgacca atgtcccgga cgagatcgag
     3661 gaatggctcg gttgactgcg acgtaagacc gacgggcgtc gctagcttgc aggtccgtcc
     3721 gaggtttccc aaggctcggt tgatctcgat cgcgagcgag tgaagttgcg gtggcgcaaa
     3781 tcgtccgacg acgaagagtg aacgaccgcg tgcctggatc aaggcacggg ccgcttcctt
     3841 cgtccaggca agttcctttt gcgtaagtcg aacgccatcc gatgagacac caacgccagt
     3901 cgcgatcgcc tgcgcgagtg aaggaaggcg tgttggcgcg actccgagcc gccggtcggc
     3961 cttcgaaccg gtttgggttg gcgtggtctc cgcgacaaga aggcgcatcc gttccctgag
     4021 cgggatgtcg ccgtgtcgat ccccccacgc ccgggcattc gttgcctgca tgggcccggg
     4081 gccgaggagg tcgtcgtcga gggaaactat gacgtcggcg tcctggatta tcggtctaag
     4141 gccagacggc gttactcgat cgaatccgcc gaagggatca aacaggtgca cctgggcgag
     4201 aggaagcatg gtccgaagct cggcaatctg gcgaagcatg gtgggcgagg ttgtcggtcc
     4261 aagcagcagc cgcagcccgg cgcccttggt tgctgcccaa gaatcgcgcc agcgagccat
     4321 ctggccgtca aagtcggccc agctcgccgg cttgccgttg aagagcgggg cttggcttcg
     4381 gtcgggatca taaaggtcga ggatggcggc ctgcatgaag ggcgtgctgc cgccaccaaa
     4441 ggaaggatga tcgcgatttc cttcgagctt gattggtcgc ccgcccgatg ttgtcgcaag
     4501 gaccggctgc gcatagccct cgaacagcac tgcggtcgca taatgaccgg ttctgccctc
     4561 gatgaacccc tcgggacggt tgacaaacgg caccgcatcg tcggagcgca ccggcttgca
     4621 gccggtcatc ccggcaaggg caagcgatgc acccatcact tcaagcaatt gtcgtcgatc
     4681 gaccgtccac aggtcaaaga tcgacgggaa ctcggccttc agcatctcgc cgaaggcatc
     4741 gcttcgctga tattcctcga gcgatcgcca gacacgcttg ccgctcatcg gtggcaagtc
     4801 ccgcaggaag tcagctggtt gggcgacttg atgtggtaga tcgccatgag tttgcggcca
     4861 agcgcctcgt ggtccgcagg gggtttccag tcgaaattgt agacttcgtc acgaggtcga
     4921 aggttgggcg cggggttgcg atggcagtcg agacagaatt tcatttcgaa cgccttcgcg
     4981 cggtaggtga gcggcatccg gtcgatgcga ccgtggcatt caacgcatgc aattcccttt
     5041 gcgatgtgga tgtcgtggcg aaagtagaca taatcgggga cgcgcgcgac gcgatgccaa
     5101 tcgattggcc ggttttccgc gaggctttgt cggactggcg caagcatctc agcgttcgtc
     5161 caaagctgcg agtggcatgt catgcacacg tgcgtcgccg gaaaacccgc attggcgctg
     5221 gtctcgacgg aggtgtggca atagcggcag tcgataccaa gttcgccggc gtgatgtttg
     5281 tggctgaacg gcactggctg cagcggggtt cgcgctacga cgtcccaata ttgcgaacgc
     5341 gcaaaggcga gcgccccgag gaaaatggcg agcgtcacga cgagtgcgcc aagagcaacg
     5401 gcgcgcaacc aagtgtccgc ggtccgtgaa aagacctggg gcactcagcg tgctttcctc
     5461 atttggcagt gacgaatctt gctgcaccga acggcagctc atcgattgaa gcagcgctca
     5521 atgttacact cctgcggtcg cactcacgca aagcgagccg ctgcaatttc gcgttccggt
     5581 atttgacggc catcaagcca acgtcctttg aaaacgcccg caagctgata cggatgtgcc
     5641 gtgcttccga tccattaaat tgctgttcac cgaacaacgt tgatccgcgt caagaaaagg
     5701 atcggccgcc ccggacggcg cattccagtg aacatgcttg cgcaagtgga gcaatttgcg
     5761 gtgggctcgg cccatatcgt gacgcgcatt gtcgaattaa cgggcattgc aataatcgcc
     5821 gttggagcgt tcgcgacgct catcctcttt ctttatcgcc tggcgacgct cgcggaccgc
     5881 gacgaggcgg tagcggactt ccgctcgagc cttggcagga ccattctcct cggcctcgag
     5941 ttcctcgttg cggcggacat catcaacacg gtcgccgttg agccgaccct caaaagcgtt
     6001 gccgtcctcg ccgggatcgt cgccatacga accttcctta gcttcagtct cgaaacagag
     6061 atcgaaggtg aatggccgtg gcaacgcggg cgacgccggc gcgaggtata gagatgatcg
     6121 atgcacatct aagaaggctc cgcagccgcg agactgtcag ccatgcagag gaagacgcca
     6181 tccggcggat ggtcagtgaa gtgaagcggt tcccgttcaa tgccgttatt gcgcgcgccg
     6241 gcgagccact ggaccatagt gtcattgtta ccgaaggatg ggtcgctcgc gtgaagcagc
     6301 cgcaagccta cgagcgccag attacggccc tttgcatcgc cggcgatttt gcggacttgc
     6361 acggattgag cctgcgagaa ctcgaccatg atctcgttgc gctaaccgag tgcgcggtag
     6421 cgatcgtccc gcacgagcgg ctcgaagctg tcatcgagtc gagcggacat ctcgcgcgtc
     6481 tctaccggtt gatgagcaac atcgacagtg cgatgcagcg cgaatgggct acatcgcttg
     6541 ggcgacggtc gcgcgccgct cacctcgcgc acttgttctg cgagctactg tcgcggctgg
     6601 aaatcgtcgg ccttgcggcg ggaaccacct atgagtttcc attgacgcaa aaccagcttg
     6661 cggactgtct tggcgcaacc ccggtccacg ttaaccgggt acttcagcag ctgcgggcga
     6721 ccggcatgat ccgcctccaa catcgctccc tcgcaatcac gaacttggcg gctctgtcgg
     6781 ccctcgcaaa attcgatgca tcctatctct tcatcgacgc aagacatcgc ccatcgatca
     6841 tggtcgacgg cgaaatacgg cacttggcca aacattcgag agcggatcgg cgcagcaaat
     6901 ccgtgcgcga cattcgtgcg cagccctaga gagcgaaaac gtcgagaatc cgctcgtcct
     6961 tctgaggata gggatcagga ccgcaaaatt cctcgattgc ggcacgatca cggatgacaa
     7021 tcgtccgtcc gcgaagatac aagccgtgat cagcaaccgt ctggagcatg cgcgacaagg
     7081 tttcagccgt tattccgagg cgaactgcaa ggtggcgctt ggcgatcggc aatacgggtg
     7141 cgggcgtgtc tggctggagg tcggcaatgc gcagcaggaa tgcagcgaca cgttgcgccg
     7201 cgcttcggca attgaggtcg agaatgttgc ggaccgccat tcgccactga ccggacattg
     7261 gtttcatgag gttcgcggcg aatgccgttg agcggttgag cgcggcttcg acggcgccgc
     7321 ctgtcagcaa taggatcttg gtgttcgtga gggcgcgggc ggaaaccaga gccggctcgt
     7381 ggaaaagggt agtcgccggg aggagcaagt ccttggacga gaggagaagg acgccgcact
     7441 cggactttcg cgacaaaagc gtgagatcaa caataccgcg caggacgacg tgcaggtcag
     7501 gtgcctgttc accctggcgc acgataaggc cgccggcacg atactgtctc gtcgaactcg
     7561 aagcgaggag tgtctcgacc agcggctctt caaccccgtt gaagattggc agatcgggaa
     7621 gttcgtctcg cgttgggtga accaggatcg acccagggtc cacgagttca gcccccgaac
     7681 gaattctttc gccgtcagcc attaacatcc aatagcatta tcaaccgttc ccagagacta
     7741 acctgcatta gctaccgagt taacatgtac tatagtccta gtcggttcaa tcgccggagt
     7801 tcctgagccg tctgcgatgg cgattgttca cgtcgacgcg catgttaatg ccaatcgaac
     7861 ggcaagccat tttctcggaa agcaaaacga tcgagatgtc tttcaacgac gctcttcatg
     7921 gcctcgagct gagcgtcgga tgatgcgtcc accaggatat tcagtccgcc ttcgaccgcg
     7981 ttgaacgtga cgatcgcatc tccaggatag tcgcttccac gcgcattctt gggaaaaatc
     8041 acgcggccgt actccggcgt gaactcgacg ttcagactat gggaccagtg tttgcagagt
     8101 tgctgaagat accgacttcc attctcggtc ggaacgaaag ccgacgacga gatgttggcg
     8161 cacgagacga ttgtcatact cacgagatat atcttagctt tggcaagaca agggtctgtg
     8221 gactccttaa ctagcgggtc caccagtagg taacagaaat cggatgaacg acggttcaac
     8281 tttcaacacg gcaacccgaa ttgccgcagg cgacgacaag acgaattacg acaatgtcgc
     8341 catatcgctc cactgggcaa cggcgatcct ggtccttttc cagtttgcct ccgccgaaac
     8401 gtgggactgg cttggtaagt ccacccgcga aacgatgcag agccttcaca tctcctttgg
     8461 cgtgctcctc accgccgtca tcattgcgcg gattgtctgg cggctcatcc ctggacatca
     8521 gcgcccctcg atcgtcagcg gttgggtcga agtcgcgtcc aaggcggtcc actaccttct
     8581 ttatgcgctg ctcgtcgccc aggcatgcct cggttttgcg ttccgctggg cccagggtca
     8641 tcccgtcagc tttttcggcc tgtttggatt tccgacgccc tttggcgtcg tcgacaaggc
     8701 gacgcgccac acgatccacg acttacatga aaaggtcggc tgggcgatca tcatcatcgc
     8761 cctcggccac gcgcttgcgg cactttacca ccattatcgg cttcatgacc gcgtgctcgg
     8821 gcggatgttg ccgctcgcgc ggcgctcgga ggaacggtca gccgctcgct agctacgctg
     8881 ggtgagcg
//
LOCUS       DASRBJ010000264         2626 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_636706,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000264 DASRBJ010000000
VERSION     DASRBJ010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2626
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_636706"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..530
                     /locus_tag="VE968_07265"
     CDS             <1..530
                     /locus_tag="VE968_07265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019051957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HZU51657.1"
                     /translation="PDNPIEIANEAFCLLTGYSESEIVGCNCRFLAGPETESSAQAQI
                     RAAIAGRRPVLVDILNYRRDGSCFRNGVMIVPMLDDDGELACFLGSQVDLGSTDTAAM
                     SMRRARARTLVQSLPQRQRQVLAAMANGLLNKQIAYELGIAEKTVKMHRVLLLERLGG
                     VTTAEAIRIAVEAGL"
     gene            complement(622..1767)
                     /locus_tag="VE968_07270"
     CDS             complement(622..1767)
                     /locus_tag="VE968_07270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HZU51658.1"
                     /translation="MQRLLDALGADEGLTRYVGGAVRDDLLGLPISDVDLATRIAPDE
                     VIRRLEAAKIKAVPTGIEHGTVTAVSDGQPFEITTLRRDVTTDGRRATVAFTDDWKED
                     AARRDFTINALSADPVTGELFDYFGGVSDLEHRHIRFIGDPLQRIAEDHLRILRFFRF
                     HARFDAGEPDAAALMACAARANDLMALSRERIADELLKLLALADPSNTIEIMLGARIL
                     APVLPEITEDGLKRLRALVASERFADVKADALRRLAALLPADVSVVQDVAGRLRLSNK
                     ARKRLVCAVTPSTGVAPRTLAYRAGVECAVDRLLLAGEPAEAAAIKEWSPPRLPLGGG
                     ALIARGLPEGPIVARTLRRIEEHWVHQGFPTGQCFDRIVDAAIRSAT"
     gene            complement(1803..2396)
                     /locus_tag="VE968_07275"
     CDS             complement(1803..2396)
                     /locus_tag="VE968_07275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HZU51659.1"
                     /translation="MTADNALGERLRRALAAPARVAPLEGDFPELRRRANVEAAVLIA
                     ITERDEPGVILTVRREHLRTHAGQIAFPGGRVDPGEDKVQAALREAHEEVGLDPQLVE
                     VAGAIEAYRTVTGYVITPVVGAVPPDLPLRPHEHEVAELFEAPLGYVLDPANHKRVSA
                     LFQGRTRYYYEIIWNNRRIWGATAAMIVNLSRRLQWR"
     gene            complement(2393..>2626)
                     /locus_tag="VE968_07280"
     CDS             complement(2393..>2626)
                     /locus_tag="VE968_07280"
                     /inference="COORDINATES: protein motif:HMM:NF044966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1285 domain-containing protein"
                     /protein_id="HZU51660.1"
                     /translation="LAFGLDNGDALILNLDHPLRIVATAHGPSPRLLVRHGLEAELAR
                     SIYYELADLALATAQGSPGVWSDGSFFPLEPVA"
BASE COUNT          515 a          795 c          822 g          494 t
ORIGIN      
        1 tgccggacaa cccaatcgaa attgcgaacg aggcgttttg cttgctcacc ggctattcgg
       61 aaagcgagat cgtcggttgc aactgccgtt tcctggcggg tccggaaacc gagtcatcgg
      121 ctcaagcgca aattcgggcg gcgatagcgg gcaggcgacc cgttctcgtc gatattctca
      181 attatcggcg cgacggatca tgtttccgta acggggtgat gatcgttcca atgctcgacg
      241 acgacggtga acttgcctgc ttcctcggct cgcaggtcga tcttggaagc accgacacgg
      301 cggctatgtc catgaggcgg gctcgtgcgc gaacgctcgt acaaagtttg cctcaacgac
      361 agcgccaggt gcttgcagca atggcgaacg gtctgctgaa caagcagatc gcctacgagc
      421 tcgggatcgc cgagaagacc gtcaagatgc accgggtact gctgctcgag cgcctaggcg
      481 gagtgacaac tgccgaagcg attcgcatcg cggtcgaagc cggactttga tcggcgcgta
      541 agtcgcagtg ctgccggctc cgagcgagcg tctgtgttcg tgcgtcgaga cggcggctgt
      601 catcgtggac tggtgaccag cttaggtggc ggaacggatg gcggcgtcaa cgatccgatc
      661 aaaacattga ccggttggaa atccctggtg gacccaatgc tcctcgatgc gccgcaatgt
      721 gcgcgcgacg attggtccct cgggcagtcc ccgagcaata agcgcgccac cgccaagcgg
      781 caggcgaggg ggtgaccact ccttgatcgc tgcggcctcc gccggctcgc cagcaagcaa
      841 taaccgatca acggcacact ctactccggc gcggtatgcg agtgttcgag gtgcaacacc
      901 ggtcgatgga gttacggcgc aaacaagacg cttccgcgcc ttgtttgaca gccgcagacg
      961 cccggcgaca tcctgcacaa cgctgacatc ggcagggagc aaggcggcaa gtcgacgcag
     1021 cgcgtcggcc ttcacgtccg cgaacctctc gctcgcaacg agcgctcgaa gccgtttcaa
     1081 cccgtcttcg gtgatctcgg gaaggaccgg cgccaatatt ctggcgccaa gcatgatctc
     1141 aattgtgttc gaagggtcgg caagtgccag aagtttcaat agctcgtcgg ctatccgctc
     1201 gcgcgacaag gccatcaaat cattcgctcg cgcggcgcat gccatgagcg ctgcagcatc
     1261 aggttcgcct gcatcaaacc gggcgtggaa gcggaagaag cggagaatac gaagatgatc
     1321 ctcggcaatg cgctggagtg gatcgccgat gaaccggata tggcgatgct cgaggtcgct
     1381 cactccaccg aaatagtcga acagctctcc ggtgacagga tcggctgaca atgcgttgat
     1441 ggtgaagtcg cgccttgcgg cgtcttcctt ccagtcatcg gtgaaagcga ccgtggcgcg
     1501 tcgaccatcg gtcgtaacgt cacgccgaag cgtcgtgatt tcgaacggct gaccgtcact
     1561 gacggccgta accgtcccat gttcgatgcc cgtcggaacg gccttgatct tcgctgcctc
     1621 gagccggcga atgacttcgt caggcgctat gcgcgtcgca agatcgacat cgcttatcgg
     1681 gaggccaagg aggtcgtcgc gaacggcgcc cccgacatag cgcgtcaacc cctcgtcggc
     1741 acccagcgca tcgaggagcc gctgcatccc gcgaagcttg cgccatttcc ccgcgtcgaa
     1801 gctcagcgcc actgcagcct acgagaaaga ttgacgatca ttgctgcagt tgcgccccag
     1861 atcctgcggt tgttccagat gatctcgtaa tagtagcgcg ttcgcccctg gaacagtgcg
     1921 ctcactctct tgtggttggc ggggtcaagg acatagccaa gcggcgcttc gaacaattcg
     1981 gcgacttcat gttcgtgtgg ccgcagcggg aggtcaggag gaaccgcgcc tacgactggg
     2041 gtgattacat agccggtgac cgtgcggtat gcttcgattg ccccagcaac ctcgacaagt
     2101 tgcggatcga ggccaacttc ctcgtgggct tctcgaagtg ctgcctgcac cttgtcttcg
     2161 ccgggatcga cgcgaccgcc cggaaaggcg atttgacctg catgcgtgcg cagatgttcg
     2221 cgccgcacgg tgaggatcac tccgggttcg tcccgctcgg taatcgcgat gaggactgcc
     2281 gcttcgacgt tggccctgcg ccgaagttcc gggaagtcgc cttcgagggg agcaacgcgc
     2341 gctggcgcag caagcgctct cctcaggcgt tcgccaagcg cgttgtcggc cgtcacgcca
     2401 ccggctccag cggaaagaag ctgccgtcgc tccagacgcc tggcgatcct tgcgcagtcg
     2461 caagggcaag atcggcaagt tcgtaataga tggatcgggc aagttcggct tcgagaccgt
     2521 ggcgcacgag tagtcgcggc gaggggccat gggccgtcgc aacgatcctc aatgggtggt
     2581 ccaaattgag gatgagcgcg tcaccgttat ccagcccgaa cgctag
//
LOCUS       DASRBJ010000265         2200 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_235465,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000265 DASRBJ010000000
VERSION     DASRBJ010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2200
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235465"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1448)
                     /locus_tag="VE968_07285"
     CDS             complement(<1..1448)
                     /locus_tag="VE968_07285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014500476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HZU51661.1"
                     /translation="MIGAVARKLFGSANDRRIRSYQPRVAAINALEPEVSELSDDALK
                     ARTDTFKKQIAEGASLDDLLVPAFATVREAAKRTLGQRHFDVQLIGGMILHEGKIAEM
                     KTGEGKTLVATLPVYLNALTGRGVHVVTVNDYLAKRDAEWMGQIYNFLGLSVGVIVHG
                     LDDEQRKRAYDCDITYGTNNELGFDYLRDNMKYRLEDMVQRGHVYAIVDEVDSILIDE
                     ARTPLIISGPLDDRSDFYNTIDSYILKLDKSDYEVDEKQRTVTMTEAGMEKMEVMLRD
                     AGLLKGGKLYDIENVSVVHHVNQALRAHKLFQRDKDYIVRNGEVVIIDEFTGRMMPGR
                     RYSEGLHQALEAKEHQPIQPENQTLASITFQNLFRMYEKLAGMTGTAMTEADEFMDIY
                     GLEVLEVPTNMPLARIDEDDEVYRTAAEKYRAIIALIEDCRKRGQPVLVGTTSIEKSE
                     HLAELMRKEGWEQHDFSDPNAFADLYSGETNK"
     gene            1795..>2200
                     /locus_tag="VE968_07290"
     CDS             1795..>2200
                     /locus_tag="VE968_07290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51662.1"
                     /translation="MISLFPAGLPASLRRTGAVAAALGLFVGATAYGLAQDKNPVVAT
                     VNGTQIHQSDVNIAEEETGQLPPMSAEQKQDYMVQFLTDMTLLTQAAEAKKMGDTEDF
                     KRKLDFARKKLLMETLLQSVAKDSLSDAALHKV"
BASE COUNT          383 a          674 c          683 g          460 t
ORIGIN      
        1 ttcttgttgg tctcgccgga atagagatcg gcgaacgcat tcgggtcgga aaagtcgtgc
       61 tgctcccagc cttccttgcg catgagctcg gccagatgct cagacttttc gattgatgtg
      121 gtgccgacca gcacgggctg cccgcgtttg cggcagtcct cgatcagagc gatgatcgcg
      181 cggtatttct ccgccgcggt gcgatagacc tcgtcgtcct cgtcgatgcg cgcaagcggc
      241 atgttggtcg gcacttcgag gacttcgagg ccgtagatgt ccatgaactc gtccgcttcc
      301 gtcatcgccg tgccggtcat gccggcgagc ttctcgtaca tgcggaacag gttctggaag
      361 gtgatcgatg cgagcgtctg gttttccggc tgaatcggct gatgctcttt cgcttcgagt
      421 gcctggtgca gaccttcgga atagcgccgg cccggcatca tgcggccggt gaactcgtcg
      481 atgatgacga cctcgccgtt gcgcacgatg tagtccttgt cgcgctggaa cagcttgtgc
      541 gcgcgcagcg cctgattgac gtggtgcacg accgagacgt tctcgatgtc gtagagcttg
      601 ccgcccttga gcagccccgc atcgcgcagc atcacctcca tcttctccat gcccgcttcg
      661 gtcatggtga ccgtgcgttg cttttcgtcg acctcgtagt cgctcttgtc gagcttgagg
      721 atgtagctgt cgatcgtgtt gtagaagtcc gagcggtcgt cgagcggacc ggagatgatc
      781 agcggcgtgc gcgcctcgtc gatcaggatc gagtccacct cgtcgacgat ggcgtagacg
      841 tgcccgcgct ggaccatgtc ctccagccgg tacttcatat tgtcgcgcag ataatcgaag
      901 ccaagttcgt tgttggtccc gtaagtgatg tcgcagtcgt acgcccgctt gcgctgctcg
      961 tcgtcgagcc cgtgcacgat gacgccgacg gaaaggccga ggaagttgta aatctgaccc
     1021 atccattccg cgtcgcgctt ggcgagatag tcgttgaccg tcacgacatg cacgccgcga
     1081 ccggtgagcg cgttgaggta gacgggaagc gtggcgacca gcgtcttgcc ctcgccggtc
     1141 ttcatctcgg cgatcttgcc ttcgtgcagg atcatgccgc cgatgagctg gacgtcgaag
     1201 tggcgctggc cgagcgtgcg cttggcagcc tcgcgcaccg ttgcgaaggc gggaacaagc
     1261 aggtcgtcga gcgaagcgcc ttccgcgatc tgcttcttga aggtgtccgt gcgcgcctta
     1321 agcgcgtcgt cggagagctc agatacctcc ggctcgagcg cgttgatggc ggcgacccgc
     1381 ggctggtaac tgcgaatccg ccggtcattg gcggagccga acagcttgcg ggcaacggcg
     1441 ccaatcatgt ctcaagctcc tcaatccatg tcctctggcg ctatcgtgac gcagcggccg
     1501 gatcgtagtt ccggcgcgcc gaagtgcggc tgttttcggg taaattcaac gcaatccgcg
     1561 ccagcaagcg ctttccgccg aggtcatttc gagacatagg agggggtccg attgatgtca
     1621 atcggccgct tgccgcctga actttcgcga ctcatagagg gccaaacgct gccgtcacgc
     1681 gcagtttacg gctttcaccg cgccctagcc attgctttgc cacggttgac gggtcagaag
     1741 actaccgccg tccgcatgtc gatatgcgga cgctccaacc ccaaggatag ctttatgata
     1801 tctctctttc cggcaggctt gccggcttcc ctgcgccgga ccggcgccgt cgccgcagcg
     1861 ttaggacttt tcgtcggtgc gaccgcgtac ggtctcgcgc aggacaagaa cccggtcgtc
     1921 gccaccgtca acggcacgca gatccaccag agcgatgtca acatcgccga ggaggaaacg
     1981 ggccagctgc cgccgatgtc ggccgagcag aagcaggact acatggtcca gttcctgacc
     2041 gacatgacgc tgctgactca ggcggccgaa gccaagaaga tgggcgacac cgaggacttc
     2101 aagcgcaagc tcgacttcgc ccgcaagaag ctgctgatgg agacattgct gcagtcggtc
     2161 gcgaaggact ctctcagcga cgcagcgcta cacaaggtct
//
LOCUS       DASRBJ010000266         3750 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_545882,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000266 DASRBJ010000000
VERSION     DASRBJ010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3750
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_545882"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            47..736
                     /locus_tag="VE968_07295"
     CDS             47..736
                     /locus_tag="VE968_07295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1013 domain-containing protein"
                     /protein_id="HZU51663.1"
                     /translation="MPHATAAWLVDNTSLTFEQIADFCGLHILEVQAIADDTAATKLT
                     GRDPIRASELTHEEIEKGQSDPDYRLKMHKAPEEIRRTKGPRYTPVSKRQDKPDGIAW
                     IIKNHPEVSDGQISKLIGTTRTTIAAIRDRTHWNMANITPKDPVTLGLTTQRELDAAV
                     AKAAKAAGMQAPSDTRLDSDREALIEELRHERERHAREAEAALAGAGDEALRDEIVPG
                     IRDPFKNTPIE"
     gene            781..1029
                     /locus_tag="VE968_07300"
     CDS             781..1029
                     /locus_tag="VE968_07300"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HZU51664.1"
                     /translation="MATLEEDVSELSFEAALARLEEIVRTLERGEAPLDRSIELYQEG
                     DRLKRHCEARLKDAQARIEQIAFGSDGKPAGLKPFDAA"
     gene            1019..1933
                     /locus_tag="VE968_07305"
     CDS             1019..1933
                     /locus_tag="VE968_07305"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004337 - geranyltranstransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="farnesyl diphosphate synthase"
                     /protein_id="HZU51665.1"
                     /translation="MPLEAIDRLAQELNAESARVRADVDGVFTKLLAPTGDSRDRLYE
                     AMRHAAVGGGKRLRPLLTIGASRLFAIDRSRALRVGCAIEALHVYSLIHDDLPCMDDA
                     DLRRGKPTVHKCFGEATAVLAGDSLHALAFEILADSSTHEDPWVRSDLVFELARAAGP
                     AGMAGGQMMDLAAEGQALDLPAITRLQQLKTGALIEYAVEAACIMTKLPSEARTPYRG
                     YARNIGLAFQIADDLIDHSGDALAAGKPTGRDADAGKATFVSLLGEERARQQAGFLVN
                     QAIEHLSSHGSEADLLRAIARFAVERDH"
     gene            1952..2443
                     /gene="coaD"
                     /locus_tag="VE968_07310"
     CDS             1952..2443
                     /gene="coaD"
                     /locus_tag="VE968_07310"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HZU51666.1"
                     /translation="MKIAVYPGTFDPITLGHLDIIRRGAHLVDKLVVGVTTNPSKEPM
                     FLVEERLAMVRREVGGIAGTIEVVEFDSLLMDFAEAQGAAAILRGLRAVADFEYEFQM
                     AGMNQQLNDKIETVFLMADVSLQPIASRLVKEIARLGGSIDRFVTASVAEDVRRHLNG
                     GSR"
     gene            2491..3069
                     /locus_tag="VE968_07315"
     CDS             2491..3069
                     /locus_tag="VE968_07315"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008830309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0016018 - cyclosporin A binding [Evidence
                     IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HZU51667.1"
                     /translation="MYVRSIMVLCVAAFSLVAAKPAPVSAPPPMPSIVAPPDIVANKA
                     NHLFLDLSTGGTVEIVLRPDLAPHHVDRIQTLVRRGFYNGLTFHRVIPGFMAQGGDPK
                     GTGEGGSDLPDLKAEFTMVPFLRGTVGAARANNPDSANSQFFIMFAPHPELDGNYTVI
                     GRVVAGMDAVDAIAPGEPPDQPTKIVRAYLGG"
     gene            3082..>3750
                     /locus_tag="VE968_07320"
     CDS             3082..>3750
                     /locus_tag="VE968_07320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007710028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosylmethionine:tRNA
                     ribosyltransferase-isomerase"
                     /protein_id="HZU51668.1"
                     /translation="MRVELFDFHLPQELIALRPARPRDSARMLLVKGCQIFDRQVLDL
                     PELLQPSDVLVFNDTKVIPAQLEGMRGDAKIGATLHKREGPREWQAFLKNAKRARRGD
                     TIGFGSGVSAAVVEKGADGSVLLHFHGDEPVEILLDRAGRMPLPPYIASKRVSDARDR
                     SDYQTIFAKEEGAVAAPTAALHFTPRLLEALERRGIRRETLTLHVGAGTFLPVKSADT
                     STHKM"
BASE COUNT          788 a         1145 c         1137 g          680 t
ORIGIN      
        1 tcatttcctg agtatttccg ggagaatagc agtggcccag cccctgatgc cccatgcgac
       61 cgctgcctgg ctggtcgaca atacgtcgct cacgttcgag cagatcgcgg atttttgcgg
      121 gcttcatatc ctcgaggtcc aggcgattgc cgacgacacg gcggcgacga agctcaccgg
      181 tcgcgacccc attcgcgcca gcgaattgac tcatgaagag atcgagaagg gacagagcga
      241 tcccgattat cgactgaaga tgcacaaggc gccggaagag attcgccgga ccaagggacc
      301 gcgctacacg cccgtttcga agcggcagga caagcccgac ggcattgcct ggatcatcaa
      361 gaaccatccc gaggtcagcg atggccagat cagcaagttg atcggcacca cccgtacgac
      421 gatcgccgca attcgtgacc ggactcactg gaacatggcg aacatcacgc caaaggaccc
      481 agtcactctc ggccttacga ctcagcgcga gctcgacgca gccgttgcca aagccgcaaa
      541 ggctgccgga atgcaggctc cgtcggatac ccgtctcgac agtgaccgcg aggcgctgat
      601 cgaagagctg cggcacgagc gggagaggca tgcgcgggaa gcagaggccg cacttgccgg
      661 cgctggcgac gaagcgctgc gtgacgagat cgtgccgggt attcgtgacc cgttcaagaa
      721 cacgccaatc gaatagccgc tcgcttgatt tgagcagacg cggggaccac aagtctgccc
      781 atggccactc tcgaagaaga tgtcagcgaa ctcagcttcg aggccgcgct cgcgcggctc
      841 gaagagatcg ttcgcaccct tgaaagaggc gaagcgccgc tcgatcgttc catcgagctc
      901 taccaggaag gcgatcgact gaagcgtcat tgcgaagctc gcctgaagga cgcccaggct
      961 cgcatcgagc aaattgcgtt tggcagcgac ggcaagccgg cagggctcaa gcccttcgat
     1021 gccgcttgaa gcaatcgaca ggctcgccca ggagctgaac gcggaaagcg cgcgtgtgcg
     1081 cgccgatgtt gacggcgtgt tcacgaagct gctcgcgcca accggcgaca gtcgtgaccg
     1141 gctctacgaa gccatgcgcc acgcggccgt cggcggcggc aagcggctcc gaccacttct
     1201 tacaatcggc gcttcgcggt tgttcgcaat tgatcgatcc cgtgcgcttc gggtcggctg
     1261 cgcgatcgaa gccctccatg tctattcgct gatccacgat gatctgccgt gcatggacga
     1321 tgccgacttg cgacggggca agccgacggt tcacaagtgc tttggcgagg cgacggcggt
     1381 tctcgcgggc gacagtcttc acgcgctagc cttcgagatc ctcgccgatt caagcacgca
     1441 cgaagacccc tgggtgcgct cggacctggt gttcgagctt gcccgcgccg caggacccgc
     1501 cggaatggcc ggcggccaga tgatggatct tgccgcggaa ggacaagccc tcgacctgcc
     1561 ggcgatcacc cgactccagc agctcaagac gggcgcgctt atagaatatg cggtcgaagc
     1621 cgcctgcatc atgaccaagc tgccgagcga ggcgcgcacg ccctatcgtg gctatgcgcg
     1681 caatatcgga cttgcgttcc agatcgccga cgacctcatt gaccatagtg gcgatgcttt
     1741 agccgcggga aagccgacgg ggcgcgacgc tgatgcggga aaggcaacct tcgtttcgct
     1801 cctcggtgag gagcgcgcac gacagcaggc aggattcctc gtcaaccagg caatcgagca
     1861 cctgtcgagc cacgggagtg aagcagacct gctccgagca atcgcgaggt tcgcggtcga
     1921 acgagatcat taagagggga cgaagttcag gatgaagatc gcagtctatc cgggtacgtt
     1981 cgatccgatc acgctgggtc acctcgacat catccgccgc ggcgcgcacc tcgtcgacaa
     2041 gctcgtggtc ggagtgacga ccaatccatc caaggagccg atgttcctgg tagaggaacg
     2101 gctggcaatg gtccgacgcg aggtcggcgg aatagctgga acgatcgagg tcgtcgaatt
     2161 cgactcactg ctcatggatt ttgcggaagc gcagggcgcc gcggcaatcc ttcgcgggct
     2221 tagagccgtc gccgatttcg aatatgagtt ccaaatggct ggcatgaacc aacagctcaa
     2281 cgacaagatc gagacagtct tccttatggc cgacgtgtca ctccagccga tcgcttcgcg
     2341 gctcgtgaag gaaatcgcga ggctcggcgg atcgatcgac cggttcgtta cggcttcggt
     2401 cgcagaagat gtccgccgcc acttgaacgg tggttcacga taaagacagc ggccatgccg
     2461 cagtgacttc caaactgctc ggggagggac atgtacgttc gttcgatcat ggttctgtgc
     2521 gtcgcggctt tcagcctcgt tgcagcgaaa ccagcgccgg tctctgcacc acctcccatg
     2581 ccaagtatcg ttgcgccacc ggacattgtc gcaaacaagg caaatcacct cttcctcgat
     2641 ctttcgaccg gcggcaccgt cgagatagtg ctccgtccag atcttgctcc ccaccatgtc
     2701 gatcggatcc agactctcgt ccgacgcggg ttttacaatg gccttacttt ccatcgcgta
     2761 attcccggct tcatggccca gggaggcgac ccgaaaggca ccggtgaagg cgggtctgat
     2821 cttcctgacc tcaaggccga gttcacgatg gtgccctttc taagaggaac agtcggagcc
     2881 gcgcgggcaa acaatcccga cagtgcaaac agccagttct tcatcatgtt tgcaccccat
     2941 cccgagctcg acggcaatta tacggtcatt ggccgcgtcg tcgcgggcat ggatgccgtc
     3001 gatgcaattg cgcccggtga acctccggac cagccgacaa aaattgtgag ggcctacctc
     3061 ggcggctaaa ggggccggcc ggtgcgcgtt gagctattcg actttcacct gcctcaggag
     3121 ttgatcgcgc tgcgaccagc gcggccgcgc gacagtgcgc gaatgttgct cgtcaagggt
     3181 tgccaaatat tcgatcggca agtgctcgac ttgcctgagc tcctgcagcc ttcggatgtg
     3241 ctcgttttca acgacacgaa agtaattccg gcccagctcg aaggaatgag aggcgatgcg
     3301 aaaatcggcg cgacgctcca caagcgggag gggcctcgcg aatggcaggc gttcctcaag
     3361 aacgcgaagc gcgcgaggag gggagacacg atcggctttg gatctggagt aagcgccgcg
     3421 gtcgttgaaa agggcgccga cgggtcggtg ttgcttcact tccacggcga tgaaccagtc
     3481 gagatacttc tcgatcgagc cgggcgaatg cctctaccac cctatatcgc atccaagcgg
     3541 gtttccgatg cacgcgatcg ttcggattat cagacgatct ttgccaaaga agaaggagcc
     3601 gttgctgctc caaccgcagc gcttcatttc actccgcggc tactcgaagc gctcgaaaga
     3661 cgcggtatcc gaagagagac ccttacgctt catgttggcg ccgggacctt cctccccgtg
     3721 aagagcgccg acacgagtac gcacaagatg
//
LOCUS       DASRBJ010000267         4298 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_28817,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000267 DASRBJ010000000
VERSION     DASRBJ010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4298
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28817"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..630
                     /gene="tatC"
                     /locus_tag="VE968_07325"
     CDS             <1..630
                     /gene="tatC"
                     /locus_tag="VE968_07325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HZU51669.1"
                     /translation="QVKVALFAALMVSFPVIATQLWRFVAPGLYAKEKRAFLPFLVAT
                     PVFFAAGASFAYFLAMPWALHFLLSYQGNVGGIQQEALPGVGNYLNFVTHFLFGFGAA
                     FLLPILLMILERAGIVTRQQLARSRRYAIVAAAIVAGVLTPPDAVSMMMLMVPLYGLY
                     EFAILAIRITHWRAARKAARSSSSAIVSEIEEGPEAPPGGGRVGGSGPI"
     gene            complement(763..2295)
                     /locus_tag="VE968_07330"
     CDS             complement(763..2295)
                     /locus_tag="VE968_07330"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF019174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HZU51670.1"
                     /translation="MTIADRFVRLPTGAKVLFILTAVLLPIGLALAWMGETGIRQANE
                     ALKGRTEDQARAAAEAIDSLIARNALALRISSNGALAAGANGACDRAVRALSIAPGVA
                     HSFEIEDPQGNALCSTGTVGATGSLPLVAPGDIKVRIAPDLNAVAIRVGVIGGLATAL
                     VPVDELRIAGVNAPGNVKSIVLHDETRELPVLQAQTVSQQPLHVSDWPVANEGLFARI
                     GTPDQRITTRDRLVLLLPLLMWIAAAIITWSLVGRLLIRPLKRLETAILAYRPGESAL
                     ELPSKLGPSEEIQELRNAFSRAIARAEESERETTSALEGQRRLVREVHHRVKNNLQVV
                     ASLLNIHGRSAGTPDARAAYAGISRRVGALSIVHRNHFAEMEENRGISLRPLVAELAA
                     ELRASAPDTARTLVIELDIDPLYTTQDVAVAIAFLVTEIVEFAMLNAPRDPVEITLRR
                     TSELTGRLSLGSPILVPDADGEPEKLQFERIIGGLAKQLRSPLDRKLGRYSVDLPVFP
                     PA"
     gene            complement(2323..2526)
                     /locus_tag="VE968_07335"
     CDS             complement(2323..2526)
                     /locus_tag="VE968_07335"
                     /inference="COORDINATES: protein motif:HMM:NF037848.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016989 - sigma factor antagonist activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NepR family anti-sigma factor"
                     /protein_id="HZU51671.1"
                     /translation="MELSGKKRSETEGAGDFRRSKKSPASDRGSPRKQRSGDLGRALR
                     SVYDDTLRESVPDDFLNLLGKLH"
     gene            2826..3626
                     /locus_tag="VE968_07340"
     CDS             2826..3626
                     /locus_tag="VE968_07340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZU51672.1"
                     /translation="MSLGQELAPHLPFLRRYARALTGSQAHGDAFVRATLEAIVAQPD
                     EFPRDVDPRLGLYKTFHAIWSTANIEEGEEPTESPTGAEGIAQARLSRITPLSRQALL
                     LTSLEGFSSEDTAYLIGASPQDVDSLVAEALEEIERQTLADVLIIEDEPIIAMDIETI
                     VRDLGHNVTGVAVTRDEAVAQARQNPPGLVLADIQLADDSSGIDAVKDILAEFSVPVI
                     FITAFPERLLTGTRPEPTFLITKPFQRSTVKAAIAQALFFDAATVPAA"
     gene            3692..3847
                     /locus_tag="VE968_07345"
     CDS             3692..3847
                     /locus_tag="VE968_07345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51673.1"
                     /translation="MAEPRQSETPVRETTTEARAGSTPGVARNVLVIGTLLVIIIFVI
                     IVLVGRS"
     gene            3936..>4298
                     /locus_tag="VE968_07350"
     CDS             3936..>4298
                     /locus_tag="VE968_07350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor"
                     /protein_id="HZU51674.1"
                     /translation="MTEAREEDRPTTALADPVPLSDPEFKEQLAAVIPHLRAFGRSLS
                     GSRDLADDLVQETLLKAWAARKRFQAGTNMRAWTFIILRNLFLSQMRRARFKGEWDDI
                     TASKILAAPASQDRHIELG"
BASE COUNT          820 a         1300 c         1280 g          898 t
ORIGIN      
        1 caggtgaagg ttgcgctgtt cgcggcgcta atggtcagct ttccggttat cgcgacgcag
       61 ctctggcggt tcgttgcgcc tggcctctat gcgaaggaaa aaagagcgtt tctgcccttc
      121 ttggttgcga ccccggtctt cttcgcggcc ggcgcctcgt tcgcttactt tcttgcgatg
      181 ccgtgggcgc tgcattttct cttgagctat cagggaaatg tcggcggaat tcagcaggaa
      241 gcgctgccgg gcgtcggcaa ttatctgaac tttgtcacgc atttcctgtt cggcttcgga
      301 gcggccttcc tcctccccat cctgctgatg atcctcgagc gtgccggtat cgttacgcgt
      361 cagcagctcg ctcgatcgcg acgctacgcg atcgtcgctg cggcaatcgt tgccggtgtg
      421 ctcacgccgc ccgacgccgt ttcaatgatg atgctgatgg tcccgcttta cggactttac
      481 gagttcgcga tacttgcgat ccgaattacc cactggagag cagcacgcaa agccgcgcgg
      541 tcatcctctt ctgccattgt gtcggagata gaagagggcc cggaagcgcc accggggggg
      601 gggagggttg gcggttccgg gcccatttaa gcggatagcg agagcggggg ggcaaaaggt
      661 cactatccga actgcataac gccccttgtt tgagatcagt tccggtaggc agtgatcttt
      721 ttaaattttt ttggctgtga ccgtaacgat catcgcctgc agctaagccg gtggaaacac
      781 aggcaaatcg acgctgtacc gaccgagctt ccgatcgagc ggcgacctca gctgcttggc
      841 aagtccaccg atgatccgtt cgaactgcaa tttttccggt tcgccatcgg catcgggcac
      901 caggatgggg ctcccgagcg agagacgccc agtgagttcg ctcgtgcgcc tcaaggtgat
      961 ttcgaccgga tcgcgcggcg cattaagcat tgcgaattcc actatctcgg tgacgaggaa
     1021 ggcaatggcg acggcgacgt cttgggtcgt gtaaagagga tcgatatcga gttcgatgac
     1081 gagcgtccgt gccgtgtcgg gagcactggc gcgaagttcc gcggcgagct ccgcaacgag
     1141 cggtcgcaac gagatacctc ggttctcctc catctcagcg aaatggtttc ggtggacgat
     1201 cgacagcgcc ccgacccggc gactaatccc ggcataggca gcgcgcgcat ccggcgtgcc
     1261 cgcgcttcgg ccatgaatgt taagaagcga ggcaaccacc tgaaggttgt tcttcacgcg
     1321 atgatgaacc tcgcgcacaa gccgccgctg tccttcgagg gcggatgtgg tttcccgttc
     1381 ggattcctcc gcgcgggcaa tcgcgcgact gaatgcgttc cgaagctcct ggatctcctc
     1441 gcttggacca agcttgctcg gcaattcgag tgcgctctca ccggggcgat atgcgagaat
     1501 ggcggtttcg agccgcttta atgggcggat caataatcga ccgacgagcg accaggttat
     1561 gatcgcggcc gcgatccaca taaggagcgg caacaagaga acgaggcggt cccttgtcgt
     1621 aatccgctgg tcgggagttc cgatgcgcgc gaacagtccc tcgttcgcaa ctggccaatc
     1681 gctgacgtga agcggctgct gcgaaaccgt ttgtgcttgg aggacgggaa gttcgcgggt
     1741 ctcgtcatgg aggacaatgc tcttaacgtt gccgggcgca ttgacgccgg caatgcgcag
     1801 ttcgtcgacc ggaaccagtg cagtcgcaag cccgccgatt acaccgacgc ggattgcaac
     1861 ggcgttcaaa tctggtgcga tccggacctt gatatccccg ggagccacga gcggaagact
     1921 gccagtcgcc ccaactgttc ccgttgagca aagcgcattt ccttgaggat cctcgatttc
     1981 aaagctgtgc gcgactccag gcgcaatgct caacgcccgc accgcgcggt cgcatgcgcc
     2041 gttcgcgcca gccgcaagcg caccattgct gctgattcga agcgcgagcg cgttgcgcgc
     2101 aataaggctg tcgattgctt cggctgcggc ccgcgcttga tcctccgtcc ggcctttgag
     2161 tgcctcgttg gcttgccgga tcccggtttc gcccatccaa gccagcgcaa gtccgatcgg
     2221 cagtaggact gcagtgagga tgaaaagtac cttcgctccc gtcggaaggc gcacgaaccg
     2281 gtccgcgatc gtcatgagcc gcccgtcagc cgggtgtgct gcctagtgaa gttttccgag
     2341 caggttgagg aagtcgtcgg gaaccgactc gcggagagta tcatcgtaca cggatcgcaa
     2401 cgcgcggccg aggtcgccgg agcgctgttt acgcgggcta ccacggtcgg aagctgggga
     2461 ctttttagag cgcctgaaat ctccggctcc ctccgtctcg cttcgcttct tcccactcaa
     2521 ctccaaatcc ccctcgcgcg ggtttccggc gcgctcataa acatctcatc tttcagcgca
     2581 actgccgtga ggacctgtcc cgctccgata cgcgtaaagg ccggccgctg cgcggcaatg
     2641 atctgcttcg cagcgagcct ggcccagtga cggaaaccaa atcgccagtc ctttgttcca
     2701 gtcgaacttc atatctctgg gggcgcagag gctcaggcgt ttatcgttcc ttccagggtt
     2761 gcaacaaatc agacgcgccg cctaaagacg gcgcaactca taatttcgag ggagaataac
     2821 cgaacatgtc ccttggccag gaacttgctc cgcacctgcc attcctccgc cgctacgccc
     2881 gtgccctcac gggtagccag gctcacggcg atgcattcgt ccgcgcgacg ctcgaggcga
     2941 ttgtcgctca acccgacgaa tttcctcgtg atgttgatcc tcggcttggt ctctacaaaa
     3001 cgttccacgc tatttggtcc acggccaata tcgaggaagg tgaagagccg acggaaagcc
     3061 cgacgggagc ggaaggaatc gcgcaggcgc gcctgtcgcg aatcacgcca ctgtcacgcc
     3121 aggcactcct cctcacctct cttgagggat tctcgtcgga ggacactgct tatctcatcg
     3181 gtgcgagtcc tcaggatgtc gacagtctcg ttgccgaggc gctcgaggaa atcgaacggc
     3241 agacgctcgc tgatgttttg atcatcgagg atgaaccgat catcgcaatg gatatcgaaa
     3301 cgatcgttcg tgatctcggc cacaatgtaa cgggcgtcgc cgtgacgcgc gacgaagcgg
     3361 ttgcgcaagc gcggcagaac ccgccgggac ttgtactcgc cgacatccag cttgctgacg
     3421 attcgagcgg catcgacgcg gtcaaagata tcctcgccga attttccgtg ccggttatct
     3481 tcatcacggc gttcccagaa cgattgctga cagggactcg gcccgagccg actttcctga
     3541 tcaccaagcc gtttcagcgc tcgactgtaa aagcggccat tgcccaggcc ctctttttcg
     3601 atgccgccac cgtgcctgcg gcataggcat cggaacacga gtccgaccgg cgcgttgccc
     3661 gattgaacag tgaaatcgtg acgagagcag aatggccgaa ccgcgacaat ccgagactcc
     3721 ggtacgagag acgacgaccg aagctcgtgc tggctcgact ccgggggtcg cccggaatgt
     3781 gctcgtcatt ggcacgttac tggtgatcat tatttttgtg atcatcgtct tggttgggcg
     3841 ctcttgagca cctagcttcc gtgacaatcg ctgttcatgt tggatcaacg cgtccgcggt
     3901 caccagtccg tgcgccaaaa agggtggggt ttattttgac ggaagctcgc gaggaggacc
     3961 gaccgaccac tgctctcgcg gacccggtcc cgctgtccga tcccgagttc aaggagcagc
     4021 ttgcggcggt cattccgcac ctgcgcgcct ttggacgatc gctttcaggc agtcgcgacc
     4081 ttgccgacga cctcgtgcag gaaacactgc tcaaggcgtg ggcggcgcgc aaacgattcc
     4141 aggctggcac gaacatgcgt gcatggacgt tcatcatctt gcgcaatctt ttccttagcc
     4201 agatgcgtcg agcacggttc aagggcgagt gggacgacat cacggcatcg aagatacttg
     4261 cagcgcccgc cagtcaggat cggcacatcg agctcggc
//
LOCUS       DASRBJ010000268         2040 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_236742,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000268 DASRBJ010000000
VERSION     DASRBJ010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2040
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236742"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..932
                     /locus_tag="VE968_07355"
     CDS             <1..932
                     /locus_tag="VE968_07355"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HZU51675.1"
                     /translation="ALELISAGEAEGVTLLRQIASTGNAEALFELADLFWSGTMVPQN
                     PAHGRLLFEYAAGLGHTEANLLATNLLASGIAGKRDWSTAIARLEAEARVIPARKAAA
                     DLIAAMDLDAVGDPKGSFVKRSLSLEPKAELVEELLTRGECEYLITAAQPNFEPSMVY
                     DSARRLVRDTIRTSDGAAFHWLIEDPAIHAINRRIGCATKTSYEDGEPLQVLRYSPGQ
                     QYHPHFDWVDGAANQRIITALIYLNDDYDGGQTAFVRTDLEVRGQTGDALVFNNALAN
                     GDGDPLAEHAGLAVTHGTKYLATRWIRERRWTP"
     gene            complement(992..>2040)
                     /locus_tag="VE968_07360"
     CDS             complement(992..>2040)
                     /locus_tag="VE968_07360"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU51676.1"
                     /translation="CAGAITDPNLIAVCRAQGAPAASIGKIPLPTSGQAQQSSGGNPY
                     LLPETAKTWTVGAVIRPRFFNNLSATVDYYNIKITNAISAPTALDVINACFANITASS
                     ATNPACTGIRRNPSTGALSGSPADTPGLPRQLSNLGKLATDGVDFTLDYRHGLGTWVG
                     SQAKLAIALGGNWTHKNTFQATPSSVNRDCNGYYSVNCNPQPRWSFNERTTLSLGRLD
                     LSVLWRYLGSEQFEPLQMASDIASATSRNAAAQAAGKALPCPDFQGTDPKGCLVDPAF
                     RHIKAYNYFDFATRFNVNEHFELTFTITNLFDRQPPVVGNTIGTTAYDSGNTYPSTYD
                     PLGRRFTAGARIKF"
BASE COUNT          405 a          612 c          638 g          385 t
ORIGIN      
        1 atgcccttga gctcataagc gccggcgagg cagagggcgt aacgctgctg cggcaaattg
       61 cttcgaccgg caatgccgag gccttgttcg aactcgcgga tctattctgg agcggcacca
      121 tggtgccgca gaatccggcg cacggccggc ttctcttcga atatgcggcg gggctcggcc
      181 atactgaggc aaacctcctt gcgacgaatc ttctcgccag cggaattgca ggcaagcgcg
      241 attggtcgac ggcgatcgct cgcctcgagg cggaagcacg cgtcatcccc gcgcgaaagg
      301 ccgcggccga tctgattgca gcaatggatc tcgacgcggt cggcgacccc aaaggctcct
      361 ttgtaaaacg cagcttgtcg cttgagccga aggctgagct cgtcgaagag ctgctaacgc
      421 gcggtgaatg cgaatatctc atcaccgcgg cgcagccaaa cttcgaaccg tcgatggtct
      481 atgattcggc gcgtcgcctc gtgcgcgata caatccgtac gtccgacggc gccgcattcc
      541 actggctgat cgaagatccc gcgatccatg ccatcaatag gcgcatcggc tgtgcgacca
      601 aaacgagtta tgaagatggc gaaccactcc aggtgctgcg ctattcgccc ggccagcaat
      661 atcatccgca cttcgattgg gtcgacggcg cagccaatca gcggatcatc accgcgctca
      721 tctatctcaa tgacgactat gatggcggcc aaaccgcatt tgtaaggacg gacctcgaag
      781 tgcgtgggca gaccggcgac gctctcgtct tcaacaacgc gctcgcgaat ggcgacggcg
      841 atccgctcgc ggaacatgcc gggctcgcgg tgacgcatgg caccaagtac ctcgccacgc
      901 ggtggatccg cgagcgacgc tggactccct agcaaaaaaa ggggcggacc cgaaagtccg
      961 ccccctcccc tttgaaccgg gttcgcgtcc cttagaactt gatccttgcc ccagccgtga
     1021 agcgacgacc gagaggatcg taggtcgatg ggtaggtgtt gccgctgtcg taggcggtgg
     1081 ttccgatcgt atttccgaca accggcggct gcctgtcgaa gaggttcgtg atcgtgaacg
     1141 tcagctcgaa atgctcgttc acgttaaacc gcgttgcaaa gtcgaagtaa ttgtacgcct
     1201 tgatgtggcg gaacgccggg tcgacgaggc aacccttggg atcggtgccc tggaagtccg
     1261 ggcacggcag agccttacca gccgcctgcg cagcagcgtt tctcgacgtt gccgacgcaa
     1321 tgtccgaggc catttggaga ggctcgaact gctccgatcc aaggtaacgc cacagtaccg
     1381 agagatccaa tcggccaagt gacaaggtcg tacgctcgtt gaagctccag cgcggctgcg
     1441 ggttgcagtt cacgctgtaa tagccgttgc agtcgcggtt gaccgacgaa ggcgtcgcct
     1501 ggaacgtatt cttgtgcgtc cagttgccgc cgagcgcaat cgcgagcttg gcctggcttc
     1561 caacccacgt gccgagccca tgacgataat caagggtgaa gtcgacacca tcggttgcaa
     1621 gcttgccgag attcgatagc tgccgcggca agcctggcgt atcggccggg cttcccgaaa
     1681 gggcaccggt cgacggattg cggcggatgc cggtgcaggc cggattggtc gccgagctcg
     1741 ccgtgatgtt ggcgaagcag gcgttgatca cgtcgagcgc tgttggcgcc gagatcgcat
     1801 tcgtgatctt gatattataa tagtcgaccg tcgcgctgag gttattgaag aagcgcggcc
     1861 gaatgactgc gccaaccgtc cacgtcttcg cggtttcggg caacaggtat ggattgccgc
     1921 ccgaggactg ctgggcctgg cccgacgtcg gcagcggaat cttgccgatc gacgcagccg
     1981 gggcaccttg cgcacggcaa accgcaatga ggttgggatc ggtgatcgct ccagcgcagg
//
LOCUS       DASRBJ010000269         3903 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_743997,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000269 DASRBJ010000000
VERSION     DASRBJ010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3903)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3903)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3903
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_743997"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            554..1081
                     /locus_tag="VE968_07365"
     CDS             554..1081
                     /locus_tag="VE968_07365"
                     /inference="COORDINATES: protein motif:HMM:NF012870.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HZU51677.1"
                     /translation="MGWSGRHGRLQRRWTAKATYVWTERDGLVYVNAVLDCTDHEGIG
                     RNISRRNDAKEATWALEDALLRRFGTLPQGDADVILRTDNALVYASELYRNLAREYWL
                     RQEFILPHAPEQNGVIESFMGTFELECVWHVVSRPSRKQRQPLKPGSTTTTSAGRIHG
                     SATSRRQPGGNSKPK"
     gene            complement(1325..2075)
                     /gene="istB"
                     /locus_tag="VE968_07370"
                     /pseudo
     CDS             complement(1325..2075)
                     /gene="istB"
                     /locus_tag="VE968_07370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016243248.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS21-like element helper ATPase IstB"
     gene            2376..2564
                     /locus_tag="VE968_07375"
     CDS             2376..2564
                     /locus_tag="VE968_07375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51678.1"
                     /translation="MFGDVEQMRIEAVNPAALQDDRLGVVGEHLTGNAAEERRRTLQA
                     AGKRLGALVVGELGVGVE"
     gene            2636..2995
                     /locus_tag="VE968_07380"
     CDS             2636..2995
                     /locus_tag="VE968_07380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51679.1"
                     /translation="MSWRRLKPDDRFCRQRWSEAAHVLLELRDPVGLAQRPDLVQKDR
                     RLQRRLASTPEPIDEVLLVRLEFGWPRTSWTAAPVVFAPQDSPDGVACDADLARDLPD
                     SLALSMQDLDLHLKLLR"
     gene            complement(3161..3616)
                     /locus_tag="VE968_07385"
     CDS             complement(3161..3616)
                     /locus_tag="VE968_07385"
                     /inference="COORDINATES: protein motif:HMM:NF013540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HZU51680.1"
                     /translation="MHTNAEQIGKLVIESVSNRLKKYLEDTGMTQAQLASQLRMSQPQ
                     VSDIITAKSTQMTAATLFRIAEFLGETTDQVGRYGRDPDDRYFIERGVKDLDEDITAI
                     GEELDDVAKRLNDLDAKMNELIARVERLERLAVPERKPAPAAGQRARWR"
BASE COUNT          751 a         1148 c         1199 g          805 t
ORIGIN      
        1 cgttcaagct gcgatcaaag agtgttaacg ctggttaaaa actgacccgg tttcagcctc
       61 gatcgccgct tcaattttga gccaccttcg ccttggattt tgcggagggt tgaaatgacc
      121 ccctcaggag ctggacacct gataagcgaa tttctcgcta ggaaggtaac caatgccgac
      181 caacaagccc tcggcctcga cgtgctcaag ggaagatctc cgtccctgaa gcctgttgca
      241 aatatggctt tccccagggc gagttccggg agtgggccga ggagtaccat cgcgccggca
      301 agccaagatc ggagagctcg tcatggaaaa cgagatccgc aaggaggccc tgcggatcgt
      361 ccctttagat gagcgcgagc atcagcagag cggatcgctg ctcgcgcagc tcgaccgaaa
      421 gccgtcgtct gccgagtctt aggcgtggca cgtagcacgt tttacgacaa accgcgcgag
      481 cgcacgccga tcgtcgacga ggtactggcg cagcggatca cgttgctgat cgagaacgag
      541 ccgtacctgg ggtatcggat ggtctgggcg tcacgggagg ctccaacggc gctggacggc
      601 aaaggcgacc tacgtgtgga ccgagcggga cggcctggtc tacgtcaacg cagtgctgga
      661 ctgcaccgat cacgaaggca tcggtcgcaa catcagccgg cgcaacgatg ccaaggaagc
      721 cacttgggcg ctggaggacg cgctcttgcg tcgattcggg acgctgccac agggcgacgc
      781 cgacgtcatc ttgcgcaccg acaacgcgct ggtctacgcc tccgagctct accgaaatct
      841 tgctcgcgag tattggttgc gccaagagtt catcctgccg catgcgcccg agcagaacgg
      901 cgtcatcgaa tcgttcatgg ggaccttcga gctcgagtgc gtctggcacg tcgtttccag
      961 accttccagg aagcaaagac aaccattgaa gcctggatcg accactacca cgagcgccgg
     1021 ccgcattcac ggctcggcta cctcccgccg tcaacctggc ggcaatagca agcccaaata
     1081 actgccggaa atgtccagaa accgcggggt catctcacat cctacaaagg cgagctgaag
     1141 ctaacaaata tcgcttcaag cttcgcaaaa cagttgctat tgcagcttcg caaaaagtta
     1201 agctctggcg ggttgcttaa gagccgctcg aggatgaatc ccccctaaac cctcagccgt
     1261 ttcgaatcgg agcggtactt tgctggctgt aaacgccggg ttgaaagctg acccgctttc
     1321 gcgcctagtc gccggttgaa ttctgaccaa ccttggccct ggatttggcc gcaggcaggc
     1381 cgatccccgc cttgcggcgc tcagggagtc gatagctgtc tccgctgatc atgacgacgt
     1441 gcgcgtggtg cagaagccgg tcgagcatcg ccgccgtcat cgtcgcgtcg ccggcgaagg
     1501 tcgtgtcccg ctgtgcgaaa gggaggttgc tcgtgatgac gatcgagccc cgttcgtcac
     1561 gatgggcgat gacctcaaag aagtggctgg cttcttcgcg cgagaacggg aggtagccga
     1621 cttcgtcaat gatgagcaac ctcggcgatt ggatcccacg atgcaggtat tgcttgagcc
     1681 gtccttgtcg gtgagccgtc gtcaagccga tcaagagatc cgccgccgaa acgaagcgcg
     1741 tcttgattcg aactgcgtgg ccttgtagcc caggccgatc gccaggtgag tcttgccgac
     1801 tccgggaggg ccgagcagca gacgttctga gctcgttcga cgaaggcgag gcccgcgagc
     1861 tcgttgatga gctgcttggg cgcaccggtg gcgaactcaa agtcgtattg ctccagcgtc
     1921 ttgatgctcg agaaaccggc cgtccgtgtg agcagagccc tggtgcgctc ttggcgctgc
     1981 tgatattcgg cctgcagcag cgcttcgaag aacttcaaga agctcagctg cttgcgggcg
     2041 gcctcgtcgg cgacctgcgg cagctgggtc gccatcgtcc ccagactcaa ccgctcgcac
     2101 cgtccgccgt agggaaaggg caagggctgc aagtccgcgc gttcgaaagc gaagcggtcg
     2161 atcggacgtt ctcgcagggt tgcgtggatg cgagggttgg cgatctcgtc gagccagatc
     2221 cgtacttcgc ggttcgccgt cgcgacgtcg acgagcgctt cttgcgccgt ttgcagcggc
     2281 accaagaacg attcgcgcag atagcggtgg aagcgttcga ctttgccttt ggtctgcgcc
     2341 cggtaaggcg ctgcgagccg gatcgtcgcg ccgtagtgtt tggcgacgtc gagcagatgc
     2401 ggattgaagc ggtgaatccc gcggcgctcc aggacgatcg tcttggcgtt gtcggcgagc
     2461 acctcacggg gaacgccgcc gaagaacgcc ggcgcacgct ccaggcagcc ggcaagcgtc
     2521 tcggtgcgct cgttgtcggt gaactcggcg taggcgtaga gtagcccagc tcggccgtga
     2581 acgcccgcag cggcgagcga ccgcggcgga agacgacgaa atcgatctgg agctggtgtc
     2641 ctggcggcgt ctcaaaccgg acgatcgctt ctgtcgccag cgctggtcgg aggctgcgca
     2701 cgtcctcctt gaactgcgtg atcccgtcgg cctagcccag cgcccggatc tcgtgcagaa
     2761 ggaccgtcgc ttgcagcgtc gccttgccag cacgcccgag ccgatcgacg aggtactcct
     2821 tgtacggctc gagtttggtt ggccgcggac ttcgtggacc gcagctcccg tcgtgttcgc
     2881 cccgcaggac agcccggacg gtgttgcgtg cgacgccgac ctcgcgcgcg atctccctga
     2941 ttcccttgcc ctgtcgatgc aggacctcga tctccaccta aagctccttc gttaacatcg
     3001 cgaacagatg ttcgcgagag tccaggtcgg tcaattttca accggcgggg tgggtcaatt
     3061 ttactccggc gctaacacat tatgaccgcg tcaaattctt attttgggag gtctatattg
     3121 gagacacttg gacgtcagcg cgaacgggct gagacgtatt ttagcgccac ctggcgcgct
     3181 gcccagctgc gggcgctggc ttacgctcgg ggacagcgag tcgctccaga cgctcgacgc
     3241 gagcgatgag ttcattcatc ttagcgtcga gatcatttag cctcttggcg acatcgtcga
     3301 gctcctcgcc aattgcggtg atatcttcgt cgaggtcctt tacaccgcgc tcgatgaaat
     3361 agcggtcgtc gggatcgcgt ccgtaacgtc cgacctgatc ggtcgtttca ccaagaaact
     3421 cggcgatcct gaagagtgta gcagcggtca tctgcgtaga tttagcggtg atgatgtcgc
     3481 tcacttgcgg ctgcgacatc cggagctgag acgctagctg agcctgcgtc atgcctgtat
     3541 cttcaaggta tttcttaagg cggtttgaga ctgattcgat aacgagtttg ccgatttgct
     3601 ctgcgttcgt gtgcatgctt actccaatac tgcgttgcgt cacaattgac gcagctggct
     3661 gcataacaaa atcgtataga cattgctttt tttcgtcaag attgacaagg ccctgtcaag
     3721 attgacaagg ctctgtcaag attgattacc ttcgggactt ggagatggcc ccgtttttac
     3781 tccgcgtgcc ctatagaaat cgcggatact ggaggtgtgt tctctgcccg ccgggcgaac
     3841 tcttcgggag cgagatttcc cagcgcgcta tgagggtgat tggcgttgta atcgcgccgc
     3901 cag
//
LOCUS       DASRBJ010000270         8330 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_283500,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000270 DASRBJ010000000
VERSION     DASRBJ010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8330
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283500"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1059
                     /locus_tag="VE968_07390"
     CDS             <1..1059
                     /locus_tag="VE968_07390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HZU51681.1"
                     /translation="LQAVDRWFAERPLTVPTMLEVGQWDQEDSYGAPAVYRALKDRYE
                     GSEMLHLVIGPWRHSGANHYGYELGDLSFTGDTAHEWRTKWMKPFLDHYLKGAPDPHT
                     PPVLTYETGVNRWEESPRWPMGTPIPLYLGEQHEAGFERPGAPGHDQYLSDPANPVPF
                     LPRPIDMGDSNQWHSWLVRDQRFVDGRPDVISYTTKPLDRPVHIMGRPQVDLFAATSG
                     TDSDWVVKLIDVYPNDIPEDRSQGAKPSMAGYELPIGIDIFRGRYVHDLARPAALTPG
                     KVEEYRFELPNVDHVFLPGHRIMVQVQSSLFPLYDRNPQTFVGNIFNAKPGDYRAATQ
                     SVYHGGATASAVILPVVQ"
     gene            1074..2537
                     /locus_tag="VE968_07395"
     CDS             1074..2537
                     /locus_tag="VE968_07395"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HZU51682.1"
                     /translation="MPWEEMEALPATARLDDQPQLMGHPVGLYFISFTEAFERFSYYG
                     MQVLLVLYMVKQLLLAPHVGRIAAFGPFTRALTYIYGSAPSNEALSSHVFGLYTSLVY
                     LTPILGGIAADRWLGKTRAVTLGALLMSAGHFLMAFDFSFLIALLLLVVGVGLLKGNL
                     ASQVGSLYPAGDNRAADGFQVYYIGINAGVIIAPLICGWLGEDIGWHYGFGAAGIGMV
                     IGLVIYRSGRKYLPRESTIEPSTSGRHSRPPMSPRDVRVLVLLILLIPVLAIGSIGNQ
                     QLYNAYLLWADGAYDFTLFGRRMPTTFLASLDAVVSVGFLVATVVFWRWYGKRHREPT
                     ELTKIALGCFVSSLAFVLLAIVAAHAATTGTKVSLWVAVAVHSINAIGFVNVFPVSLA
                     FYSRAAPRSIGATMVGIYYLFLFGANTLVGWIGGWLTQMPPAHFWGLHALAIFGAGIV
                     FVLVQVAFGKLLAAAETNSDAPGIAAGHEGEVVHPIA"
     gene            complement(2699..3190)
                     /locus_tag="VE968_07400"
     CDS             complement(2699..3190)
                     /locus_tag="VE968_07400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008601967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="demethoxyubiquinone hydroxylase family protein"
                     /protein_id="HZU51683.1"
                     /translation="MLRVDQAGEYGATRIYAGQLAVLRRNCPEAKLVARMAAQEQRHL
                     DRFNHLMAERRVRPTLLQPLWNVAGFALGAATAVLSEKAALACTDAVETEIDKHYSEQ
                     LHQLGDDDPELKSDIAEFRTDELEHRDTAREAGAAQTFGYPLLTAAIRAGCRVAIELS
                     KRI"
     gene            complement(3232..3759)
                     /locus_tag="VE968_07405"
     CDS             complement(3232..3759)
                     /locus_tag="VE968_07405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HZU51684.1"
                     /translation="MSNAIAIKAGHSPKLSPAALARLIALLLPVALLGGAIGSQYLGG
                     LHPCEMCYWQRWPHALAILLALIAFTAPAQSRNARVLTLLAALAIAVSGAIGVYHAGV
                     EAKIFEGFTQCTATVKPGLSTAELLKQLTHAPLVRCDEVQFRFLGISLAGWNAILSLG
                     GAAAIVALALRSKTV"
     gene            complement(3768..5111)
                     /locus_tag="VE968_07410"
     CDS             complement(3768..5111)
                     /locus_tag="VE968_07410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019830978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HZU51685.1"
                     /translation="MKFNPKFIPSLALVGALALVPVTASSFAAVDTTNYQELEKFMSV
                     YERVKANYVDPVDDHTLIKGAIDGMLAALDPHSSYVEANDFDQLKATTDGNYGGLGLT
                     VSMEDGVVKVIAPTEDTPAYRAGIKSGDYITHINGEFLNNLTLDEAVAKMKGDPGTKV
                     KLTVIRPGHDKPLEFTLVRERIQLHPVKWEIKDGIGYININTFTGNVAEQTKAALVAI
                     DKATGGHPLGYIVDLRSNPGGLLDQAVDVADDFLDSGEIVSQRGRTKDDIERYYARPG
                     DLAHGLPVIVLTDAGTASASEIVAGALQDHRRALIMGERSFGKGSVQTVVQTGPESAL
                     RLTTARYYTPSGRSVQAGGIEPDVVVPQLSDPDYKDRVVVREADLRRHLLAQAKVDDK
                     LLEADNSPDPRFTAKADDLEKKGIKDFQLYYAMNTLKRLAAPVAIASAAPTKKTH"
     gene            complement(5153..6331)
                     /locus_tag="VE968_07415"
     CDS             complement(5153..6331)
                     /locus_tag="VE968_07415"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HZU51686.1"
                     /translation="MRAMGLALVVSPFLTASALAQSSEQPLEAALHSALAEQAAANAQ
                     TARLEQIASRAHSDAERLRAEEAAALEAVDAAEARISAADVQLRLASAYVAAHRVQLA
                     AEQQPISSLLAGLGTMARRPPLLVLADRGGVDELVRVRLLLDSTLPIIRKRTRDISAE
                     IAKGRRLEQAAIEARSELASSRAELLARRQRFAVLEQSAVRQELASTGAALGSSDLAI
                     AAGESVERLRAQETGSLSVRRVAEVLAREQASPASPFKPEGGAPPFTLDYQLPASAPV
                     TEGLGAINDSGVIARGITLATARGTPVAAPADGTIQFAGPFRDYDGVLIIDHGNGWLS
                     LIVNAASTLHPGDRVRRGDEVGRALGPLQVELSRNEHRISAALIAGSSQNLSNGTKGG
                     "
     gene            complement(6336..6758)
                     /locus_tag="VE968_07420"
     CDS             complement(6336..6758)
                     /locus_tag="VE968_07420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010408926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HZU51687.1"
                     /translation="MLLHIVARGKIARSPEGDLVDRYFKRITWPTKLTELPDEGGKLP
                     ALPANSIRVVLDERGRALRSVEFAALLGGWRDSGKRETCFIIGAADGHDEAMRQSADF
                     LLSLGPATWPHLLARAMLAEQLYRATSILAKHPYHREG"
     gene            complement(6759..7577)
                     /locus_tag="VE968_07425"
     CDS             complement(6759..7577)
                     /locus_tag="VE968_07425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HZU51688.1"
                     /translation="MAFVAQPAAAASTASLSSLEQQLSSLVANKSADVGVAALDLDTG
                     ETVSIKGNTPFPMASTVKVAIAALYLADVDHGQRSLDDTINGQSVRVLMRRMLVFSDN
                     HAADILFKDVGGPHAVHKWLQDNGVQGVHVDRTIAELLQSKRDLWDRRDSATPVAMVD
                     LLRRLYKGDLIRPESRNYLLNLMAQCETGKNRMKWLLPSGTPVEHKTGTLTGLADDVG
                     FITLPDGRRVAVAIFTRGGADRPRTIAETARAIYDGFKSVFAWPFGSPATTAQH"
     gene            complement(7618..8013)
                     /gene="rsfS"
                     /locus_tag="VE968_07430"
     CDS             complement(7618..8013)
                     /gene="rsfS"
                     /locus_tag="VE968_07430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HZU51689.1"
                     /translation="MTEHAAEGAGSAPADVEQLHKLVLQSLDDDQAQEVVSIPLAGKS
                     NIADHMVIASGRSTRQVASMAVKLADKIKERFGRNVRIEGLPAADWVLIDADDVIVHI
                     FRPEVRNFYNLERMWAFGDESGVSAAARG"
     gene            complement(8010..>8330)
                     /locus_tag="VE968_07435"
     CDS             complement(8010..>8330)
                     /locus_tag="VE968_07435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51690.1"
                     /translation="LPNFHKWRDWRRLAREVPIAVIRRPGYDSVAHAACAMGWLRGFV
                     HPSRQARHWTEWSAPAIIFLRLPPDPTSATAIRAQDPHWYRRSSTRVAARCSMTAKPR
                     QEIT"
BASE COUNT         1604 a         2535 c         2478 g         1713 t
ORIGIN      
        1 ctccaggccg tggatcggtg gttcgcggaa cgtcccctca ccgttccaac gatgcttgaa
       61 gtcgggcagt gggaccagga ggatagctac ggggcgccgg ctgtctaccg cgccctcaag
      121 gaccggtacg aaggttccga aatgctgcac ctcgttatag ggccatggcg tcactcgggc
      181 gcaaaccact atggctacga gctcggcgat ctaagtttca ccggcgatac ggcccacgaa
      241 tggcgtacca agtggatgaa gccgttcctc gaccattatt tgaaaggcgc gcctgacccc
      301 cacacgcctc ctgtactcac ctacgaaaca ggggtgaacc gctgggaaga aagtccacgc
      361 tggcccatgg gaacgccaat cccgctttat ctcggcgaac aacatgaagc cgggttcgag
      421 cgcccaggcg ctcctggaca cgaccagtat ctgtcggatc ccgccaatcc ggtacctttt
      481 ctgccgcgcc caatcgacat gggcgacagc aatcagtggc atagctggct cgtccgcgac
      541 cagcgcttcg ttgacggccg tcccgatgtc atcagctaca cgacgaaacc gctcgatcgc
      601 cccgttcaca tcatgggtcg gccgcaggtg gacctgttcg ccgccacgag cggcaccgac
      661 agtgactggg tggtaaaact cattgacgtt tatcccaacg atatcccgga ggatcgttcc
      721 cagggcgcta agccgagcat ggcggggtac gaactgccga ttggaatcga cattttccgt
      781 ggccgctatg ttcatgacct tgctcgtcca gcagctctga cgcccggcaa ggtcgaggaa
      841 taccgctttg agctaccgaa cgtcgaccat gtgttcctcc ccggccaccg catcatggtg
      901 caggttcagt cgagcctttt cccactctat gaccgcaatc cccagacgtt cgttgggaac
      961 atcttcaacg cgaagccggg cgattaccgc gccgccacgc agagcgttta ccatgggggt
     1021 gccaccgcga gtgccgtcat cctcccagtc gtccaataga cgaggaccag cggatgccct
     1081 gggaggaaat ggaagcgttg ccagcaacgg caaggctcga cgaccagccg cagttgatgg
     1141 gccatccggt cggcctttac ttcatttcct tcacggaggc gttcgagcgc ttctcctatt
     1201 acggcatgca agtgctgctc gtcctctata tggtgaagca gctccttctg gcgccgcacg
     1261 ttggcagaat cgccgccttc ggcccgttca cgcgcgcact gacctacatt tacggctcgg
     1321 cgccatcaaa cgaagcgctc tcctcccatg tcttcggtct ctacaccagt ctcgtttact
     1381 tgacgccgat actcggcgga atcgcggccg atcgctggct tggcaaaacg cgcgcggtga
     1441 cgcttggtgc actgctgatg tccgctggcc atttcctcat ggccttcgat ttttcattcc
     1501 tgatagcgct attgttgctg gtcgtcggcg tcgggctcct gaagggcaac ctcgcaagcc
     1561 aggtcggaag cttgtaccct gccggtgaca atcgggcggc cgatggtttc caggtttact
     1621 atatcggcat caatgccggt gtgatcatcg ccccgctcat ttgcggttgg ctgggcgagg
     1681 atattggctg gcattacggg ttcggtgccg ccggcattgg catggtcatt gggcttgtga
     1741 tttatcggtc gggccgcaag tacctgcctc gagaaagcac aatcgaacca agcacgtccg
     1801 ggcggcattc gagaccacca atgtcgccgc gagacgtgcg cgtgctcgtg ttgctgattc
     1861 tgctcattcc cgttcttgcc attggatcga ttggcaatca gcagctctac aacgcttatc
     1921 tcttgtgggc cgatggtgct tatgatttca ccctcttcgg gcgccggatg ccaacaacct
     1981 ttcttgcgag cctggacgcc gtggtcagcg tcggctttct cgtcgcaacc gtcgtgttct
     2041 ggcgatggta tggcaaacgt catcgggagc cgaccgaact tacgaaaatt gcgctcgggt
     2101 gtttcgtctc gtcactggca ttcgtgcttc ttgcaatcgt tgccgcgcac gcggcgacga
     2161 cgggaacgaa ggtgagcttg tgggtggcgg tcgccgtcca ctcgataaac gcgatcggct
     2221 tcgtcaacgt tttcccggtt agcctcgcct tctactcgcg cgcggcacca cgctcgatcg
     2281 gcgcgacgat ggtcgggatc tattacctct tccttttcgg tgccaacacg ctcgtcgggt
     2341 ggatcggagg ttggctgacg caaatgccgc cggcgcattt ctgggggctt catgcactgg
     2401 cgattttcgg cgctggaatc gtcttcgtgc tcgttcaagt cgccttcggc aaactgctgg
     2461 ccgccgctga gaccaatagc gatgcgccgg gaattgcggc tgggcacgaa ggcgaagtcg
     2521 tacaccccat cgcctgatct gcgtacggca gggtcgatct acgttcaccg gctgcctttt
     2581 tgtgccccgt gacctctgac ggttggtcgt acatcgcgcc ttcctcagaa ggtgccgcgc
     2641 cggtcctgct gtgcgtcgtt cgagcggacg atcggcggcg ttcgcgatgg tttggttctt
     2701 agatccgctt tgacaactcg atggctactc tacagcctgc acgaattgcc gccgtcaaca
     2761 acgggtatcc gaatgtttgt gccgcaccgg cttcgcgtgc cgtatcacgg tgctcgagct
     2821 cgtcggttct gaattccgcg atgtcactct tgagctcggg atcgtcatcg ccaagttgat
     2881 gcaattgctc tgaataatgc ttgtcgattt cggtctcgac ggcatcggtg caggcaagag
     2941 ccgccttttc ggaaagaact gccgttgccg cgccaagtgc aaagccggca acattccaaa
     3001 gcggttgaag cagcgtcggg cgcactcgcc gttcggccat taggtgattg aagcggtcaa
     3061 gatgtcgctg ttcctgcgca gccatgcgcg cgacgagctt ggcttcaggg caattgcggc
     3121 gaaggacggc aagctggccg gcgtaaatgc gcgtcgcgcc atattcgccg gcttgatcca
     3181 cgcgaagcat ggacgagcga tcgggacggc gatcccctgg ccgccatttg ctcaaacggt
     3241 cttgctcctc aatgccagcg cgacgattgc tgccgcgccc cccagcgaaa gaatcgcgtt
     3301 ccacccggcg agcgatattc caagaaagcg gaactggact tcgtcacacc gaacgagcgg
     3361 agcgtgcgta agctgcttca gaagctcggc ggtgctgagg ccgggcttta ccgttgctgt
     3421 gcactgggtg aagccttcga aaatctttgc ctcgactccg gcatggtaca caccgattgc
     3481 gcctgaaacg gcaattgcaa gcgccgcaag cagcgtcaga acacgggcgt tgcgagactg
     3541 ggccggggcc gtgaacgcga tgagcgcgag caggattgcg agcgcgtgcg gccaacgctg
     3601 ccaataacac atctcacaag ggtgaagacc ccccagatac tgggagccaa tcgccccgcc
     3661 gagcaatgcg accgggagaa ggagagcaat caatctcgca agtgccgccg gcgaaagctt
     3721 cggtgaatgc cctgccttaa tcgcgatcgc gttgctcact gctcagccta gtgcgttttc
     3781 ttggtcggcg ctgcggatgc aattgccacc ggtgcagcga gccgtttcaa ggtgttcatc
     3841 gcgtaataca gctgaaagtc cttgataccc ttcttttcaa ggtcatccgc cttggcggtg
     3901 aaccgggggt cggggctgtt gtcggcctcc aggagcttat catcgacctt cgcctgagca
     3961 aggaggtgcc ggcgaagatc ggcttcacgc acgaccacgc gatccttata atcagggtca
     4021 cttagctgcg ggacgacgac gtctggctcg atgccgcctg cctgaacgga tcggccggac
     4081 ggcgtgtaat aacgcgcggt ggtaagacgc agcgcgcttt ccgggcctgt ctgtacaacg
     4141 gtctgcaccg atccctttcc gaacgatctt tcgcccatga tcaacgcgcg tcggtgatcc
     4201 tgaagtgcac cggcgacgat ctcggatgcc gaggccgttc ccgcatccgt gaggacgatg
     4261 accggaaggc cgtgcgcaag atcacctggc cgtgcgtaat agcgctcgat atcgtccttt
     4321 gttcgcccgc gctgggaaac gatctcgccg ctgtcgagga agtcgtcggc gacgtccacc
     4381 gcctggtcga gaaggcctcc cggattggaa cgaagatcga cgatgtagcc gagcgggtga
     4441 ccgccggtcg ccttgtcgat cgcgaccaga gcagcctttg tctgttcagc gacattgccc
     4501 gtgaatgtat tgatgttgat gtaaccgatc ccgtccttga tctcccactt caccgggtga
     4561 agctggattc gctcgcggac gagagtgaac tcgagcggct tgtcatgacc ggggcgaatc
     4621 acggtgagct tgaccttcgt ccccggatcg cccttcattt tggcgacggc ttcatcaagc
     4681 gtgagattat tcagaaactc gccattgatg tgtgtgatgt aatcgcccga cttaattccc
     4741 gcgcggtatg ccggggtatc ctcggttggc gctatgactt tgacgacgcc gtcttccatg
     4801 gaaacagtga gaccaaggcc accataattg ccgtcggtcg tcgccttaag ctgatcgaag
     4861 tcattcgcct cgacatagga actgtgggga tcgagcgctg caagcatccc atcgattgcg
     4921 cccttgatga gcgtatggtc gtccacgggg tcgacataat ttgccttcac ccgctcgtag
     4981 acgctcatga acttctcgag ctcctggtaa ttcgtggtgt ccactgctgc aaaagagctt
     5041 gcagtgaccg gtaccaaggc gagtgcaccc acgagcgcga gagaagggat gaatttggga
     5101 ttgaacttca taaggtctcg tcctgtacgg gcagctagcc tcgacgaggc atttagccgc
     5161 ctttcgttcc atttgacaga ttctgagatg aacctgcgat gagggcagcc gagattcgat
     5221 gctcattacg ggacaattcg acctgcagcg gtccaagtgc tcggccgacc tcgtcgccgc
     5281 gccgcacgcg atcgcctgga tgaagtgtgg atgcggcatt gacgatgagg ctcagccagc
     5341 cattcccatg gtcgattatc aagacgccat catagtcgcg aaaaggaccc gcaaattgaa
     5401 ttgtgccatc ggccggcgca gcgacggggg ttccgcgcgc cgttgctagg gtgatcccac
     5461 gtgcaatcac tccgctgtcg ttgattgcgc ctagcccttc ggtaaccggt gccgaggcgg
     5521 gcagctgata gtccaaggtg aagggcggcg ctcccccttc tggcttgaac gggcttgctg
     5581 gagaggcctg ctcgcgagca agcacttcgg cgacgcggcg gacggacaga ctacccgtct
     5641 cctgtgcgcg caagcgttcg acgctctcac cagcggcaat tgcaagatcg cttgagccaa
     5701 gtgccgcgcc agtagacgca agttcctgcc gaacggcact ttgctcgagg acagcaaagc
     5761 gctgcctccg ggcaagcagc tcggcgcggc tactggcgag ttccgagcgc gcctcgattg
     5821 ccgcctgctc aagtcttcgg cccttggcga tctcggccga gatatccctc gtgcgcttgc
     5881 ggatgattgg gagcgtcgaa tccagaagca gacgaaccct gacgagctca tcgacaccgc
     5941 cacggtcggc aaggacaaga agcggcggtc gccgagccat tgtgccaagt cccgccaata
     6001 gagaggagat cggctgctgc tcggccgcaa gttgcactcg gtgcgcggca acataggccg
     6061 acgccaagcg gagctgcaca tcggccgcgc taattctcgc ctccgccgca tcaacagcct
     6121 cgagcgccgc tgcctcttcg gcgcgaaggc gctcggcgtc actatgcgct cttgaagcga
     6181 tttgctcgag cctcgcggtc tgcgcatttg cagccgcctg ttcagccaac gccgagtgaa
     6241 gggctgcctc cagcggctgt tcgctgctct gtgcaagtgc actcgccgtc aagaaaggcg
     6301 agacgaccaa ggcaagtccc atcgcacgca tggcgctatc cttcacgatg ataggggtgc
     6361 ttcgcaagga tcgacgttgc acggtaaagc tgctccgcaa gcattgctcg agcgaggagg
     6421 tgaggccagg tcgccgggcc aagggaaagc aaaaagtcgg cggattgacg catcgcttcg
     6481 tcgtgaccgt ctgcagcgcc gatgatgaag cacgtctccc tcttgccgct gtcgcgccaa
     6541 ccaccgagta gtgctgcgaa ctcgaccgac cgcagagcac gtccgcgttc gtcgagcaca
     6601 acacgaatgc tgtttgccgg gagtgcggga agcttgccac cttcgtctgg cagctccgtg
     6661 agcttcgtcg gccaggtgat ccgcttgaag tagcgatcga caagatctcc ttccggagaa
     6721 cgggcgatct ttccgcgcgc aacgatgtgc aaaagcacct aatgttgcgc ggttgtcgcg
     6781 ggacttccga atggccaggc gaagacggac ttgaaaccgt cataaattgc acgagcggtt
     6841 tcggcgattg tgcgcggccg atccgcgccg ccacgggtaa agatcgccac cgcaactcgc
     6901 cgaccatcag gcagggtaat gaaacccaca tcgtccgcaa ggccagtcag cgtacccgtc
     6961 ttgtgttcga cgggagtccc ggaaggcaac agccatttca tcctgttctt gccggtctcg
     7021 cattgcgcca tgaggttgag caggtagttg cggctttcag gtctgatcag gtcacccttg
     7081 tagagccgtc gaagaaggtc aaccatcgca accggagtag ccgagtcccg gcggtcccac
     7141 aggtcacgct tgctttgcag aagctcagca atcgtacgat cgacatgaac cccttggacg
     7201 ccattgtcct gcagccactt atggaccgca tgcgggccac cgacgtcctt gaacaatatg
     7261 tcggcggcat gattgtcgct gaaaaccagc atgcgccgca tcaggacgcg cacactctgc
     7321 ccgttgatcg tgtcgtcgag cgaccgctga ccatggtcaa cgtctgcgag gtaaagagcg
     7381 gcaatggcaa ccttgacggt gctcgccatt ggaaacggcg tgttgccctt gatgctaaca
     7441 gtctcgccag tgtcgagatc aagcgctgcg acaccgacgt ccgcggattt attcgcgaca
     7501 agagagctta gctgctgctc aaggctgcta aggctcgccg tcgacgccgc ggccgctggc
     7561 tgcgcaacga acgccaaaaa cgataaagag aacgcaatat accgcatggt cccgccctta
     7621 cccgcgtgcc gccgcgctca cgccagactc atcaccaaat gcccacattc gttccaaatt
     7681 gtaaaagttt cttacttccg gacgaaaaat atggacgatc acgtcatccg catcgatcag
     7741 cacccagtcc gctgccggga gtccttcgat ccggacattt cttccaaatc gctcttttat
     7801 cttgtccgca agcttaacgg ccatcgacgc aacctgccgg gtcgagcggc ccgacgcaat
     7861 gaccatgtgg tcggcgatgt tcgacttccc cgcgagcggg atggagacaa cctcctgcgc
     7921 ctggtcgtca tcgagcgact ggagaacgag cttgtggagt tgttcgacat cggcgggagc
     7981 gctgccggcg ccttcagcgg catgttcggt caagtgatct cctggcgagg cttggcagtc
     8041 atcgagcagc gcgcggcaac gcgcgttgag gatcggcgat accagtgggg atcttgcgcg
     8101 cggatggcgg tcgcggaggt cgggtcgggc ggcaggcgaa ggaaaatgat cgccggtgca
     8161 ctccactccg tccaatgccg tgcctggcgc gaaggatgga cgaaccctcg aagccagccc
     8221 atcgcgcacg ccgcgtgggc aactgaatca taaccggggc ggcgaatcac cgcaatcggc
     8281 acttcgcgcg ccaagcgcct ccaatcgcgc catttgtgaa aatttggcag
//
LOCUS       DASRBJ010000271         3249 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_336093,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000271 DASRBJ010000000
VERSION     DASRBJ010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3249)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3249
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336093"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..321)
                     /locus_tag="VE968_07440"
     CDS             complement(<1..321)
                     /locus_tag="VE968_07440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcrB/AcrD/AcrF family protein"
                     /protein_id="HZU51691.1"
                     /translation="MIQSKADEWEQRAVEFLERRWILVTLLCWLGFCGWMIFEHWDQI
                     RWFGLGDTDDNMRIMQVRAWLHGQGWYDLRDYRMDPPFGANIHWSRLVDLPIAGLILG
                     LRPFL"
     gene            368..772
                     /locus_tag="VE968_07445"
     CDS             368..772
                     /locus_tag="VE968_07445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010405271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HZU51692.1"
                     /translation="MATRLNLPTETFGQLLRFAIVGFGLAAVYSGIYWVLATYVMPPV
                     AAVGIAFLVSVSIGFVLHSRWSFRGHGRQEDNRLKVRFLLVQLSGFVLNEIFTWVLTG
                     PLVHGRTWWPLIPAIFVTPLATFVLNRRLVFR"
     gene            772..1500
                     /locus_tag="VE968_07450"
     CDS             772..1500
                     /locus_tag="VE968_07450"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HZU51693.1"
                     /translation="MERVVYRQMAELDERHWWYRARRQIIADLIAREGHLPENARILE
                     IGCGTGHNLLMLSGFGHVEGLELDDEARALSEKRLGRKVMSAPLPQLEGVPDRHYDLI
                     GAFDVIEHIDDDVAALESIARKLRPGGRFIMTVPAHQWMWTAHDEVNHHKRRYSKSRL
                     RALVEQSPLKLQRLGYFNSLLFPLAVLERTGAKLRGKDDGDVRLPPAPLNSVLEKVFA
                     AERHLVGRFPMPPGLSLFAVASAM"
     gene            complement(1434..2453)
                     /locus_tag="VE968_07455"
     CDS             complement(1434..2453)
                     /locus_tag="VE968_07455"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HZU51694.1"
                     /translation="MTALSIVVPCFNEEACLEELHERIGLAASQIAGTDYELVLVNDG
                     SSDGSWKTMLRLAGEDAHVVAVNLSRNHGHQLALTAGLDLCRGDLILIIDADLQDPPE
                     LIAAMYGVMREKQADVVYGVRKSRAGETAFKRATAHGFYRLLSRATEVDIPLDAGDFR
                     LMTRRALDALLAMPEQARFIRGMVAWIGFKQVPFAYDRAERFAGATKYPLKKMMRFAF
                     DALTGFSSAPLKLASHAGLLLSAGSVLLILYIAYSWITGKNIQGWTSLMLVVVVLGAV
                     QMFVLALMGEYIGRLYNEAKRRPLYIVEEVAGHFEPASARLGYIADATANKERPGGIG
                     KRPTR"
     gene            complement(2450..>3249)
                     /locus_tag="VE968_07460"
     CDS             complement(2450..>3249)
                     /locus_tag="VE968_07460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51695.1"
                     /translation="EWKAKWHWIYMALRDRWKWFDIGSLVVAALAFVYAIFSRKLTFS
                     RNLAFSAIVLALSFVLIPRIVFGSAYADMRLVPYLMAVALLAIRFRGAPDRSTAKVLA
                     ILGLLFFATRTVANTVSLGIAANDQSAKLKAIDQMPEGARVISLVGMTCNEYWPMLRN
                     GHLGAMVIVRRDGFANDQWVIEGVNLLDLKYTKAGYFAADPSQLVRPNHCLDPLHRMI
                     DTSLSTLPRNDFDYVWLIDPPAFSPETVADMKLVWRGPRSYLYKTQP"
BASE COUNT          666 a          966 c          962 g          655 t
ORIGIN      
        1 gaggaatggg cgtaagccga gaatgaggcc tgcaatcggc agatcgacca gtcgcgacca
       61 gtgaatgttg gcgccgaagg gcgggtccat tcggtagtcg cgaagatcgt accacccttg
      121 accatgcagc cacgcacgca cctgcatgat gcgcatgtta tcgtcagtat cgccgagacc
      181 gaaccagcgt atttggtccc aatgctcgaa tatcatccag ccgcagaaac cgagccagca
      241 gagcaacgtg accaagatcc accggcgctc gagaaactcg accgcacgct gctcccactc
      301 gtccgccttg ctttggatca tttttccggc tctagccgct cgaccttcaa cggcaaacag
      361 ccggaacatg gcgacgagat taaacttacc gaccgagacg tttggacaat tgctgcgatt
      421 tgcaatcgtc ggctttggcc tcgccgctgt ctattccggc atttactggg ttcttgcgac
      481 ctatgtcatg ccgcccgttg cggcggtggg cattgcgttc ctcgtgtccg tcagcatcgg
      541 tttcgtactc cacagccgct ggagtttccg cggccacggc cgccaggaag acaaccgtct
      601 caaggtccga tttctcctcg ttcagctttc cggtttcgtg ctcaacgaga ttttcacttg
      661 ggttctgact ggcccgctcg tccatggacg cacgtggtgg ccgttgatac cggcaatctt
      721 cgtgacaccg cttgcgacct tcgtgcttaa tcgacggctg gtttttcgct gatggaacgg
      781 gtcgtctatc ggcaaatggc ggagctcgat gagcgacact ggtggtatcg cgcgcggcga
      841 cagatcattg cggacctgat tgcgcgggag ggccatctcc ccgagaatgc ccgaatcctc
      901 gagatcggct gcggtaccgg tcacaatctc ttgatgctgt cgggattcgg gcatgtcgaa
      961 gggcttgagc tcgacgacga ggcgcgcgcg ctttccgaaa aacgccttgg ccgcaaggtc
     1021 atgagcgcgc cacttccgca gctcgagggt gtcccggatc gccattatga tctgatcggc
     1081 gcgttcgacg tcatcgaaca tatcgacgac gacgtcgcgg cgcttgaatc gatcgcgcgc
     1141 aagctaagac ccggcggacg gttcattatg acggttcctg cccaccagtg gatgtggacg
     1201 gcgcatgacg aagtgaatca tcacaagcgg cgctactcga agagtcggct cagggcgctc
     1261 gtcgagcagt cgcctttgaa gctacagcgg cttggctatt tcaacagctt gctctttccg
     1321 ctcgctgttc tcgagcgcac tggagcaaag ctcaggggca aggatgacgg cgacgtgagg
     1381 cttcctcctg caccgctcaa ttccgttctg gaaaaggtgt tcgccgcgga gcgtcacctc
     1441 gtcggccgtt tcccgatgcc tcccggcctt tccttgttcg ccgtcgcatc ggcgatgtaa
     1501 ccgagccggg cgctcgccgg ttcgaagtgc ccggcgactt cctcgacaat gtagagcggg
     1561 cgccgcttgg cttcgttgta aagacgaccg atatattcgc ccatcagtgc caagacgaac
     1621 atttggacgg cgccaagaac aaccacgacg agcatcaagg acgtccagcc ttggatgttc
     1681 ttgccggtga tccaggaata ggcgatgtag aggatcagca gaaccgaacc ggcggacagg
     1741 agaaggcccg cgtggctcgc aagcttcaat ggagccgatg agaagccggt tagcgcatcg
     1801 aacgcgaacc gcatcatttt cttgagtgga tattttgtcg cgcccgcgaa gcgctccgcg
     1861 cggtcgtaag caaagggcac ttgcttgaag ccgatccatg ccaccatgcc gcggatgaac
     1921 cgtgcctgct cgggcatcgc gagaagcgca tccagcgcac gccgcgtcat caggcggaag
     1981 tcaccggcat cgagcggaat gtcgacctcg gttgcgcgcg acagcaagcg gtaaaaaccg
     2041 tgcgccgtcg cccgtttgaa cgccgtctcg ccagcacggc tctttcgtac gccgtacacc
     2101 acatccgcct gcttttcgcg catcacgccg tacatcgcgg caatgagctc cggcgggtcc
     2161 tgcaggtcgg cgtcgatgat caagatgagg tcgccgcggc agaggtcgag gcctgccgta
     2221 agcgcaagct ggtggccgtg gtttcgcgag aggttcacag cgaccacgtg cgcgtcttcg
     2281 ccagcgagcc gaagcatggt tttccagctg ccatcgctcg agccatcgtt cacgagaacc
     2341 aactcgtaat ccgtgcccgc gatttggctc gcggccaagc caatgcgctc atgcagttcc
     2401 tcaaggcatg cttcttcgtt gaagcaggga acgacgatgg aaagagcggt catggctgag
     2461 ttttgtacag gtagcttcgt ggtccacgcc acacgagctt catatcggca actgtctcgg
     2521 gactgaaagc cggtggatcg atcagccaca catagtcgaa atcgttcctc ggcaaggtcg
     2581 aaagcgacgt gtcaatcatc cggtggagcg ggtcgaggca atggttgggc cttaccagct
     2641 gtgagggatc cgccgcgaaa tagccggcct ttgtatattt gagatcgagc agattgacgc
     2701 cttcgatcac ccactggtca ttggcgaagc catcgcgccg aacgattacc atcgctccaa
     2761 ggtgaccgtt tcgaagcatc ggccaatatt cgttgcaggt catgccgacg aggctgatca
     2821 cgcgcgcgcc ttccggcatc tggtcgattg ccttgagctt tgccgattga tcgttggcgg
     2881 caatgccgag gcttacggta ttagcgacgg ttcgcgttgc aaagaaaaga agaccaagga
     2941 ttgcaagcac cttcgccgtc gagcggtcgg gcgcgcctcg gaagcgaatg gcgagtaagg
     3001 ccaccgccat tagatagggc accagccgca tgtcggcgta ggccgatcca aacacgatcc
     3061 gtgggataag gacgaagctc agcgcgagca cgatcgctga aaaagcaagg ttgcgcgaaa
     3121 aggtcagctt ccggctaaag atcgcgtaca cgaacgccag tgccgcaaca acaagcgagc
     3181 ctatgtcgaa ccatttccag cggtcgcgca acgccatgta gatccagtgc cacttggcct
     3241 tccactcga
//
LOCUS       DASRBJ010000272         5941 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_336428,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000272 DASRBJ010000000
VERSION     DASRBJ010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5941
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336428"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1842
                     /locus_tag="VE968_07465"
     CDS             <1..1842
                     /locus_tag="VE968_07465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004210075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HZU51696.1"
                     /translation="IQENNIVQTIASAAGTLSAIIFVLPGLVMVGWWTGFPYWLSVAV
                     IGIGGILGVMYSVPLRRALVTGTDLPYPEGVAAAEVLKVGAGVGGAEENRRGLVLISG
                     STIVSALYFILAKTRIVTDAAAKTFRVGSGGSALSASLSMALIGVGHLVGVAVGLAMV
                     IGLVISWVFIVPHWTHDPGLIAQAGGDLDKLVAMAFKTKARMVGAGTIGIAAIWTLLR
                     IIGPIISGISAALAANRERKAGRGDALPITEQDIPIGMVAAVILLSMIPIGFLLHAFG
                     NTAPIAANPGATIVISIVYTLVAGIIIAAVCGYMAGLIGASNSPISGVGILSVLGISL
                     ILVALFPGVTGDLTKSLVAYALFVTAIIFGVATISNNNLQDLKTGELVQATPWRQQVA
                     LVLGVVFGSLVIPPILDLLNTAFGFQGAPGAGNNALSAPQAAIISTIAQGVLGGSLDW
                     GLIGEGAIIGVVAVAIDELLKRGTNGRMYLPPLAIGMGIYLPMEATLLIPVGAVLGWF
                     YNRWALSSRSPAFAERLGVLMATGLIVGESLMGVVYAAAVAAAEKAGSKDSANVLALV
                     KPYSAVMVVSIIVFAIALAGLYLWTRSRATDAPSVDDEAGTPEPSYR"
     gene            complement(1833..2849)
                     /locus_tag="VE968_07470"
     CDS             complement(1833..2849)
                     /locus_tag="VE968_07470"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: protein motif:HMM:NF006083.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008677 - 2-dehydropantoate 2-reductase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HZU51697.1"
                     /translation="MPPTVAILGAGSVGCFLGGAWAIAGVPVTFIGRSKLASEIQSHG
                     LTVSDFSGREARVGRDQVDYRCSPDALAAAQLIAVTVKSADTSLAAAQIAEHARAGTT
                     IISFQNGVSNIDVLEQCLGGRMKLARGMVAYNVAYLGAGRFHKGVAGELYADCSPETQ
                     ALAQAVANGLAPLRLSDNMLGLAWGKLLINLNNAVNALSGKTLREELSCRGYRRVFAA
                     SIREGLGLLDRAQIKALSPGPISIKRLPLIIDLPDWLFNNIFLKRWKIDEKARSSMAD
                     DLGHGRRTEVDYLNGEFVRLAEKLHSNAPVNRAIAELVHAAERGAPPLSPAELRAALL
                     GGQR"
     gene            complement(2858..3304)
                     /gene="queF"
                     /locus_tag="VE968_07475"
     CDS             complement(2858..3304)
                     /gene="queF"
                     /locus_tag="VE968_07475"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003041949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preQ(1) synthase"
                     /protein_id="HZU51698.1"
                     /translation="MQTRELGKKSALPASPGEAVLDYVPNPRLGTLYLVRFTAPEFTS
                     LCPVTGQPDFAHLVIDYAPRETIVESKSLKLFLASFRNHCGFHEDVTVGIGQRLTEEM
                     GPRWLRIGGYWYPRGGMPIDVFWQSGPPPEGLWLPDQAVQPYRGRG"
     gene            3351..4190
                     /locus_tag="VE968_07480"
     CDS             3351..4190
                     /locus_tag="VE968_07480"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HZU51699.1"
                     /translation="MESLVSTEWLADRLGEPDLVVIDATWFMPSSGRDPRGEFLAAHI
                     AGARFFDIDAVSDSDSPLPHMLPSAAKFGVAMSELGVGLNDRIVVYDNSPLRTSARAW
                     FMLRHFGASSVAILDGGFEKWIAEDRPTKTGEPSPRAARFTANERDGVVTKDRLLAGI
                     DIPWLDARGRARFEGVEPDPREGVASGHAPEARNLPYSCLYDNDGCMKSPDELRELFA
                     KAGIDPRKPFVASCGSGVTANSIIFAAHLLGNDDALLYDGSWSEWGADPATPKVLGPA
                     RRG"
     gene            complement(4177..4530)
                     /locus_tag="VE968_07485"
     CDS             complement(4177..4530)
                     /locus_tag="VE968_07485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51700.1"
                     /translation="MLHLVPQSEPVSSPVYAEAVARLASVRHALRLVDGGFGAGPEDS
                     LDQDIAAAWPNSSEAKQQWFDRRSTVLVGAAEAGIEALLEERHGGRVPHNDACRSLVD
                     EIRRELRDVANIILA"
     gene            complement(4594..5145)
                     /locus_tag="VE968_07490"
     CDS             complement(4594..5145)
                     /locus_tag="VE968_07490"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HZU51701.1"
                     /translation="MAETNLPARLVEIESMLDRSRRRFEEGTKLVEEAHKILAEVQQA
                     IIGSPRSVSPEDSEEAASRLLASLKATGSDMPDSLCGGRLSVDQVQRLIRIDGHPIGI
                     TEMEYRVLELLAFARNNVVTRQMLLKHLYRRADDQPQPKIIDVFISKLRKKLRNASGG
                     AEFIETIPQRGWILRDVDEKSGA"
     gene            complement(5175..5582)
                     /locus_tag="VE968_07495"
     CDS             complement(5175..5582)
                     /locus_tag="VE968_07495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3035 domain-containing protein"
                     /protein_id="HZU51702.1"
                     /translation="MPKPFFAFVLVAAASLSGCFHRAHVSTPDEFAVARNAPLIIPPD
                     FNLAPPVAGTAGLSPTEAQQQAIDALFGGPAPRSPGETSLLDAAGRNDAQDGIRSQVW
                     DPDTRIVDKGQETVHILAAANTSTNIASAHPGQ"
     gene            complement(5575..>5941)
                     /gene="lspA"
                     /locus_tag="VE968_07500"
     CDS             complement(5575..>5941)
                     /gene="lspA"
                     /locus_tag="VE968_07500"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HZU51703.1"
                     /translation="NGISLGLLNATTEVGRWMLVALTSAIAIGVAIWMGREKYRLDQV
                     ALGMVLGGALGNILDRARHGYVVDFADLHFGEWRPFLIFNIGDAAISIAVVILLLRAF
                     LSRKDESKGSDPEETIEHA"
BASE COUNT         1105 a         1765 c         1826 g         1245 t
ORIGIN      
        1 atccaggaaa acaacatcgt tcaaacgatc gcttcggcgg cgggaacctt gtcggcgatc
       61 atcttcgtgc tgccagggct ggtcatggtc ggctggtgga ccggctttcc ttattggctg
      121 tcggtcgccg taatcggcat cggtgggatc cttggagtca tgtattccgt tccgctccgg
      181 cgcgccttgg taaccggaac tgaccttccc taccccgaag gtgtcgctgc tgccgaggta
      241 ttgaaggtcg gggcgggcgt cggtggagcc gaggagaacc ggcgcggtct cgtgctcatc
      301 agtggctcga cgattgtctc ggcactctat tttatcctgg ctaagacccg catcgtcacg
      361 gatgccgcgg caaagacatt tcgcgtaggc tccggcggaa gcgcactttc ggcaagtctt
      421 tccatggcgc tgattggagt cgggcacctc gtcggcgtcg ccgtcgggct tgccatggtc
      481 attgggcttg tcatcagctg ggtattcatc gttccccatt ggacgcacga ccccggcctg
      541 attgctcaag cgggtggcga tctcgacaag ctggtcgcaa tggcgttcaa aacgaaggct
      601 cgcatggttg gcgccgggac gatcggcatt gcggcaatct ggaccctgct tcgcataatc
      661 ggtccaatca tcagcggcat cagtgctgcg ctcgcggcga accgcgaacg caaggccggc
      721 cgcggtgacg cgcttccgat taccgaacag gacatcccga tcggcatggt tgccgctgtc
      781 attctccttt cgatgattcc aattggcttc ctcctgcacg cgttcgggaa cacggcgccg
      841 atcgcggcga accctggcgc cacgattgtg atcagcatcg tctacacgct cgtcgccggg
      901 atcataatcg cggccgtctg cggctacatg gccggtctca tcggcgcgtc gaacagtccg
      961 atttctggag tcggcatttt gtcggtcctc gggatttcgt tgattcttgt cgcgctattc
     1021 ccaggagtta cgggagatct tacgaagtcg ctcgttgcct acgcgctttt tgtaaccgcg
     1081 atcatcttcg gcgtcgcaac aatctcgaac aacaatcttc aggatctcaa gaccggcgag
     1141 ttggtccagg cgacgccgtg gaggcaacaa gtcgcgcttg ttcttggtgt tgtcttcggg
     1201 tctctcgtca ttccgccgat actcgatctg ctaaacaccg catttgggtt ccagggcgct
     1261 cctggagcgg ggaataatgc gctcagtgct ccgcaggcag cgatcatttc aaccatcgcc
     1321 caaggcgtgc tgggaggcag cctcgactgg ggtctcattg gtgaaggtgc gattataggc
     1381 gttgtggccg ttgccattga tgaactcctg aagcgcggca cgaacgggcg catgtacctt
     1441 cccccgcttg ccattggcat ggggatctat ctgccgatgg aggcgacctt gctgatcccg
     1501 gtcggtgcag tcctcggctg gttctacaat cgttgggcgc tcagctcgcg aagccctgcc
     1561 tttgccgagc gtctgggcgt gctgatggcg accggtctga tcgtcggcga aagcctcatg
     1621 ggcgtcgtct atgctgccgc agtcgccgct gccgagaagg cgggatcgaa agacagcgcg
     1681 aacgtgcttg ctctcgtcaa accttattcc gcggtgatgg ttgtaagcat cattgttttt
     1741 gcgatcgctc tggccggtct ctatctgtgg acgcgatcgc gcgcgaccga cgcgccttcc
     1801 gtcgatgacg aggcgggtac tcccgagcct tcctaccgtt gaccgccgag caaggctgct
     1861 cggagctcgg ccggtgagag tggaggcgca ccccgttcgg cggcgtgaac aagctcggca
     1921 atagcgcggt tgaccggagc attgctgtgc aacttctcgg ccaatcgaac gaactcgccg
     1981 ttcaggtaat caacctcggt cctgcgccca tggccaaggt cgtcggccat tgacgagcgc
     2041 gccttttcat caattttcca gcgctttagg aagatattgt taaacagcca gtctggcaga
     2101 tcgatgatca gcggcagccg tttgatagag attggtcctg gacttagggc cttgatttgc
     2161 gcacgatcga gtagtcccaa gccttcgcgg atcgatgcgg cgaagacgcg ccggtagccg
     2221 cgacagctaa gttcttcgcg cagggttttg cctgagaggg cgttcaccgc gttgttgagg
     2281 ttaatgagca atttgcccca ggcgaggccg agcatgttgt cactgagtct tagtggggca
     2341 agcccattgg cgacggcttg ggcgagcgcc tgcgtttctg gactgcaatc ggcgtaaagt
     2401 tctcccgcta cgcctttgtg gaagcgccca gcgccgaggt aagcaacatt gtaggcgacc
     2461 attccccgag caagcttcat tcgaccgccg aggcactgct cgaggacgtc gatgttgctg
     2521 actccattct gaaagctgat gatcgtggtt ccggctcggg catgctcggc aatttgcgca
     2581 gcggctagag aggtgtcggc gctcttgacg gtgacggcga tcagttgcgc cgcggctagc
     2641 gcgtccgggc tgcagcgata atcgacttga tctcgcccca cgcgcgcctc gcggccactg
     2701 aagtcactga ccgttagtcc gtgactttgg atttcgctcg cgagcttcga gcgcccaata
     2761 aacgtaactg gtacacccgc gattgcccaa gcgccgccaa ggaagcatcc gaccgatccg
     2821 gctccgagga tcgcgactgt cggtggcacc cgtgacctca tccccttccg cgatacggct
     2881 gcactgcttg gtcgggaagc cacaggcctt cgggcggcgg cccggattgc cagaaaacgt
     2941 cgatcggcat gccgccgcga gggtaccagt agccgccaat ccgcagccac cgaggtccca
     3001 tctcctcggt cagtcgctgc ccgatgccaa ccgtgacgtc ctcgtggaaa ccgcaatggt
     3061 tacgaaacga cgcaagaaat agcttcaggc tcttgctttc gacgatcgtc tcgcgcggtg
     3121 catagtcgat cacaaggtgc gcgaaatcgg gctggcccgt gaccgggcac aatgacgtga
     3181 attcgggagc cgtgaagcgc acaaggtaga gcgtcccaag ccgcgggttg ggaacatagt
     3241 ccaggaccgc ttcgcccggc gatgcgggaa gcgcactctt cttgccaagc tcccttgtct
     3301 gcattgcaag cgaactagca ggcactaagc cggaagccta tcctcgcgcg atggaatcgc
     3361 tcgtttcgac tgagtggcta gctgaccggc ttggcgaacc ggatcttgtc gtcatcgatg
     3421 cgacctggtt catgccgagc tcaggccggg atccgcgcgg cgagttcctg gccgcgcaca
     3481 ttgcgggcgc acgcttcttc gacattgacg cagtttctga ttccgacagc ccgctgccgc
     3541 acatgcttcc ctccgcagcc aagtttggcg ttgcaatgag tgaactaggt gtgggcctta
     3601 acgaccgcat cgtcgtctat gacaattcac cgttgcggac ctctgcgcga gcctggttca
     3661 tgctccgcca tttcggtgct tcgagtgtag cgatactgga cggcgggttc gaaaagtgga
     3721 ttgccgagga tcggcccacc aaaactggcg agccttcgcc aagagcagcg cgctttaccg
     3781 cgaacgaacg cgatggggtg gtaaccaagg accggctcct ggccggtatc gacattccat
     3841 ggctcgacgc acgaggaaga gcgcgctttg aaggcgtgga gccggacccg cgggaaggag
     3901 ttgccagcgg acacgcgccg gaggcgcgca atcttcccta ttcctgcctt tacgacaatg
     3961 atggctgcat gaagtcgccg gacgagctcc gggagctgtt cgccaaggcg ggaattgacc
     4021 ctcggaagcc ctttgttgcg agctgcggtt caggagtaac ggcaaacagc atcatctttg
     4081 ccgcacattt gctcggcaac gacgatgccc tgctgtacga cggcagctgg agcgagtggg
     4141 gtgccgatcc ggcaactccc aaagtgcttg gtccagctag gcgaggatga tgttggcgac
     4201 gtcgcgcagc tcgcgacgaa tctcatcaac gagcgaccgg caggcatcgt tatgcggtac
     4261 gcggccaccg tggcgctcct caagaagcgc ttcgattccg gcttcggcag caccgaccag
     4321 cacggtcgag cgccggtcga accactgctg cttcgcctcg ctgctgttgg gccatgctgc
     4381 tgctatgtcc tgatcgaggc tgtcttccgg accagcgccg aacccgccat cgaccagtcg
     4441 tagcgcgtga cgaacgctcg cgaggcgcgc gacggcttcg gcgtagacag gagaggaaac
     4501 cggttcggac tgcggcacta agtgaagcat ccatcctggc tagcccgacg gagctaagaa
     4561 aaagtgaacg gccttcagct aatttcttcg agcctaggcg ccgctctttt cgtccacgtc
     4621 gcgcaagatc cagccgcgtt gcgggatcgt ctcgatgaac tctgccccgc cgcttgcatt
     4681 gcgaagcttc ttgcgaagct ttgaaatgaa cacgtcgatg atctttggct gcggctgatc
     4741 atcggcacga cgatagagat gcttgaggag catctgacga gtaacgacgt tgttgcgggc
     4801 gaaggcgagc aactcaagca cgcgatactc catctcggtg attccgatgg ggtggccatc
     4861 gatccggatc aaccgctgga cctgatccac ggacaacctg ccgccgcaaa ggctgtccgg
     4921 catgtcgctg ccggtcgcct tgagcgaggc aagcaagcgt gaagcggctt cctcgctatc
     4981 ttcgggcgac acactgcgcg gtgatccgat gatcgcctgc tgcacttcag caaggatttt
     5041 atgtgcctct tcgacgagct tcgtgccttc ctcgaagcga cgccgcgaac ggtcgagcat
     5101 cgattcgatc tcgacgaggc gggctgggag attggtttca gccattcttg tcggtttcgc
     5161 tcccttgctc gcgcttactg gcccggatgg gccgacgcga tattcgtgct ggtatttgct
     5221 gcggcaagaa tgtgcacggt ttcctggccc ttgtcgacga tgcgagtgtc gggatcccag
     5281 acttggctgc ggatgccgtc ctgcgcgtcg tttcggcctg cagcatcaag aaggctcgtt
     5341 tcgccgggac tgcgcggggc agggccgccg aacagcgcat caatcgcctg ttgctgcgct
     5401 tccgtcggcg acagcccagc tgttcctgca accgggggag cgagattgaa atcgggagga
     5461 atgatgagtg gcgcgttgcg agcaacagcg aactcgtcag gtgtcgatac gtgcgctcgg
     5521 tggaagcagc cgctcaatga agcggcggcg accagcacaa acgcaaaaaa gggtttaggc
     5581 atgttcgatg gtctcctcag ggtcgctgcc ctttgattca tccttacggc tcaggaacgc
     5641 gcgcagcaac aggatgacga cggcaatgct gattgcggca tcgccgatgt tgaatatcag
     5701 gaacggccgc cattcaccaa aatggagatc ggcgaagtct acaacataac cgtgacgcgc
     5761 gcgatcaagg atattgccca atgcgccccc aagaaccatg ccaagcgcca cctggtcgag
     5821 acggtacttc tcgcgcccca tccagatagc aacgccgatg gcaatggcgg atgtaagcgc
     5881 caccagcatc catcggccga cctccgtggt ggcattcaga agtccaaggg aaatgccgtt
     5941 a
//
LOCUS       DASRBJ010000273         4329 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_638804,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000273 DASRBJ010000000
VERSION     DASRBJ010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4329)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4329)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4329
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_638804"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1142
                     /locus_tag="VE968_07505"
     CDS             <1..1142
                     /locus_tag="VE968_07505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HZU51704.1"
                     /translation="EVDPDAAVVIITAHGAVSVAVEAIKAGASDFVAKPWSNERLAAT
                     VRSAAALRRSRIDARTERGRASELTPTAETPLLGNSPAMQRVRTLIDRAAPTDANVLI
                     LGENGTGKEIVAREIHRLSRRSSHPMISVDLGATSETLFESELFGHSKGAFTGAASDR
                     IGRLKAADHSTLFLDEIGNLPLHLQPKLLTALEQREVVPVGSNKPISIDVRVVAATNV
                     SIDNLADEKRFRQDLLFRLNTIEIELPPLRDRRDDIPALLYHYLSLYARKYGKPAREL
                     PDHVLETLCRHDWPGNVRALRHAAERAVIMAEGDRFHLEDFPLPRRFEASSVNVTEDT
                     MNLDQLEKQMIERALRMHHFNVSLAATELGLSRGALYRRMEKHGL"
     gene            1132..2460
                     /locus_tag="VE968_07510"
     CDS             1132..2460
                     /locus_tag="VE968_07510"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU51705.1"
                     /translation="MDFRRKFEFGLAWRTLLLVAAILLIAKAAETPGVRAGLVVAALI
                     GVVAFASLWSFIRRTNFIVSRFVESVRFEDYSQRFSNPSGGGFDVLGQTLDHALKTLQ
                     ARHAEETAEARYLAAIVDDAPSALLTLDESGRITLLNKAARQLFARTPLNRLEDLNSL
                     GPELSAAVRLPPGTRKITRLILEGVPQKAIFASAQVARLDEPVTVLSVLPVQSELGAL
                     EVAAQADLVRVLTHEIMNSLTPVTSLARTGADLVAVAAKSDKSLSDARTATETVARRA
                     EGILRFVESYREFASAPDIHRRQFKAKPWAEEIMRLALANASEREIDAKVVVEPKTMS
                     LMVDPELLAQALLNLLRNSIRATAEVEQPIVVLELAREAGGHFRIEVRDNGPGIPGDR
                     REDIFLPFYTTHKGGSGVGLSFARQVALAHGGSICALGAREGGANLRMVI"
     gene            2462..3091
                     /locus_tag="VE968_07515"
     CDS             2462..3091
                     /locus_tag="VE968_07515"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HZU51706.1"
                     /translation="MSKETAPKSRLRQVRLLLWLLIAVTAIGVAGSYLIVQDRAQEGE
                     APSTPSKAHFGGPFTLRAADGKPFSSEALAGKPYAIYFGFTRCADVCPTTLSRLVKLR
                     REAGNDQALRIVFVTIDPMHDGPREVGQYASLFSSPIIGLTGSQAQIDQVKKQYGIYA
                     EPVANAPMGKEMEHTAIVLLFDRNQHFAGTISPDEPDADALEKLKKLLA"
     gene            3132..>4329
                     /locus_tag="VE968_07520"
     CDS             3132..>4329
                     /locus_tag="VE968_07520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiU family protein"
                     /protein_id="HZU51707.1"
                     /translation="MASYRPDPRILTLGDAFYDPVKPADFPRCIARFTNQRWAERVGL
                     KLEDQAWSRHFCRFEPLPDNLSEPVALRYHGHQFRVYNPDIGDGRGFTFAQLRDDRGR
                     LLDLGTKGSGQTPYSRFADGRLTLKGGVREILASEMLEALGVDTSKSFALFETGEALE
                     RGDEPSPTRSAVLTRLSHGHIRIGSFQRLAFFGEIENLKSLTRYCLEYLYCAPSSSDD
                     QENGERLFDLIGSSTAKLAATYLAAGFVHGVLNSDNINITGESFDYGPWRFTAFWDPN
                     FTAAYFDQGGLYAFGRQPEAIHWDLAQLAGCLSLIARSSALSDKLAGWSARFEEELVA
                     AMLRRLGVAPGVNDREIVAALIRALATRAQSIDRIFFDWRGGRDPGDETYQSDEFRKL
                     SDLLQHR"
BASE COUNT          894 a         1298 c         1271 g          866 t
ORIGIN      
        1 tggaggtgga tcccgacgcc gcagtcgtga tcattacggc gcacggagca gtctcggttg
       61 cggtcgaggc gatcaaggcg ggcgcgagcg atttcgttgc aaagccctgg agcaacgaac
      121 ggttggccgc gactgtaagg agtgcggccg cccttcggcg aagccggatc gatgcgcgga
      181 ccgagcgagg tcgggcttct gagctgacgc ccactgcgga aaccccactt cttggcaatt
      241 cgcccgccat gcagcgagtg cgcacattga ttgaccgcgc agcaccaacc gatgcgaacg
      301 tgctgattct cggcgagaac ggaacaggca aggagatcgt cgcgcgcgaa atccatcgtt
      361 tgtcacgccg cagcagccat ccgatgatct cggtcgactt gggcgcgacg agcgagacgc
      421 tctttgaatc cgagctgttc ggccactcga agggtgcctt taccggcgct gcgagcgacc
      481 ggatcgggcg cctgaaggcg gctgaccata gcaccctctt cctcgacgag atcggcaacc
      541 ttccactgca cctccagccc aagctgctga cggcattgga gcagcgcgaa gtcgtccctg
      601 tcggctcgaa caagccaatt tcgatcgacg ttcgcgtagt tgcagcaacg aatgtctcga
      661 tcgacaatct cgctgacgaa aagcgcttcc ggcaggatct cctgttccgg ctgaatacga
      721 tcgagatcga gcttccgcca ctgagagacc ggcgcgacga tatcccggcc ctcctctacc
      781 actacctcag tctttacgcg cgcaaatacg gcaaacccgc gcgtgagctc ccggaccacg
      841 tgctcgaaac actttgccga cacgattggc ccgggaatgt gcgcgcgctt cgtcacgcgg
      901 cagaacgggc cgtgatcatg gccgaaggcg accgcttcca ccttgaggac tttccgctac
      961 cgcgacggtt tgaagcttcg tccgtgaacg tgaccgaaga cacgatgaac cttgatcagc
     1021 tcgaaaagca gatgatcgag cgtgcactaa ggatgcatca tttcaacgta tcgctcgcag
     1081 cgactgagct ggggctgtca cgtggcgcgc tttaccggcg catggagaag catggacttt
     1141 aggcgcaagt tcgagttcgg ccttgcctgg cggacgctgc tactcgttgc tgcaattctt
     1201 cttattgcga aggcggccga gacaccggga gtgcgcgccg gtctggtcgt cgcggcactg
     1261 atcggtgtcg tagcattcgc aagcctctgg agtttcatcc ggcgaacgaa tttcatcgtg
     1321 tcccgctttg tcgagagtgt ccgcttcgaa gattattcgc agcgcttctc gaacccttcg
     1381 ggaggcggat tcgatgtcct tggccaaaca cttgaccatg cccttaagac tcttcaggcg
     1441 cgccatgctg aagagaccgc ggaagcgcgt tacctcgcgg caatcgtcga tgatgcgcca
     1501 agtgcgctcc tgacgctcga tgagagcgga cggatcacgc ttctgaacaa ggccgcgcgc
     1561 cagctttttg cgcgcacgcc actcaatcgg cttgaggatc tgaattcgct tggtccagag
     1621 ctctcggctg ccgtgcgcct gccaccagga acgcgcaaaa tcacgcgcct catcctcgag
     1681 ggcgtccccc aaaaagcgat ctttgcttcc gcacaggtcg ctcgtctcga cgaaccggta
     1741 acggtcctct cggtacttcc ggtgcagagt gagctcgggg cgctcgaagt tgcagcacaa
     1801 gcagacctcg tgcgggtttt gacgcacgag atcatgaatt cactgacgcc agtgacctcg
     1861 ctcgcgcgca ccggcgccga tctcgttgca gtagcggcca agtccgacaa gtcgctgagc
     1921 gacgcaagaa ccgcgacgga gacggtagcg cggcgtgctg aagggatatt gcggttcgtc
     1981 gaaagctacc gcgaatttgc ctcggcgcca gacatccacc ggcgtcagtt caaggcgaaa
     2041 ccatgggcag aagaaatcat gcggcttgcg cttgccaatg cgtccgaacg agaaattgat
     2101 gcgaaagttg tcgtcgagcc caagacaatg agccttatgg tcgacccgga gcttctcgct
     2161 caagctctcc tcaatcttct gcgcaactcg atccgtgcaa cagccgaggt agagcagccg
     2221 atcgtcgtgc tcgagcttgc gcgcgaagcg ggcggtcact ttcggatcga ggtgcgcgat
     2281 aacggccctg gaattcctgg cgacaggcgt gaagacattt tcctgccctt ttacacgacg
     2341 cataaggggg gcagcggtgt cgggctgagc tttgcgaggc aggttgcgct tgcgcacggg
     2401 ggatccatat gcgctcttgg ggcgcgcgaa ggcggcgcca accttcgaat ggtgatctga
     2461 gttgagtaaa gaaacagcac ccaagtcgcg attgaggcaa gtgcggctgt tgctctggct
     2521 attgatcgca gtaacagcga ttggcgtcgc aggatcatat ctgatcgtgc aagatcgcgc
     2581 gcaggaaggt gaagcaccaa gcactccctc gaaagcccac ttcggcgggc ccttcacgct
     2641 ccgagcggct gatgggaaac cattctcgag cgaagcactc gccgggaaac cctatgcaat
     2701 ctattttggc ttcacgcgct gtgccgacgt ctgcccgaca accctctcgc ggctggtcaa
     2761 gctgcgacgc gaagcaggga acgatcaagc gcttcggatt gtgttcgtta cgattgatcc
     2821 gatgcacgat gggccgaggg aagttggcca atatgcttcg ttgttcagtt cgccgatcat
     2881 cggcctgact ggaagccagg ctcagatcga tcaagtgaag aagcaatatg gaatttatgc
     2941 ggagccggtt gccaacgcgc cgatgggaaa ggaaatggag cacacggcaa ttgttctgct
     3001 gttcgatcgc aaccaacatt ttgccggcac catttcaccc gacgagcccg acgccgacgc
     3061 actcgaaaaa ttgaagaagc ttcttgcctg acgagttgga acccttgccc cgtcacgcag
     3121 cttgaggagg gatggcaagt taccgccccg acccgaggat cttgaccctc ggtgatgcct
     3181 tctacgatcc tgtaaagccc gccgactttc cccgatgcat tgctcgattc acgaaccaac
     3241 gctgggctga gcgtgttggc ttgaagcttg aagaccaagc ctggtcacga catttctgcc
     3301 gctttgagcc actgcccgat aatctctccg aaccagttgc gcttcgctat catgggcacc
     3361 agttccgcgt ctataatccg gatatcgggg acggccgcgg atttaccttc gcccagctgc
     3421 gcgacgacag aggccgcctt ctcgatctcg gcacgaaagg gtcggggcag acaccgtaca
     3481 gccgatttgc tgacggccgg cttactctga agggcggcgt ccgcgaaata ctcgcgagcg
     3541 agatgctcga agcgctcggt gtagacacat cgaagagctt tgctctgttc gagacgggtg
     3601 aagcactcga acgcggcgat gagccttccc ccacccgatc cgcggtactg actcgcctca
     3661 gtcacggcca cattcgtatc ggcagcttcc agcgactcgc attctttggc gagatagaaa
     3721 acctcaaatc attaacgcgg tactgcctcg aataccttta ttgcgctccc tcatcgagcg
     3781 acgatcaaga gaatggcgaa cgcttgttcg acctcattgg cagctcgact gcgaaacttg
     3841 cggcaactta ccttgctgcc ggcttcgtcc atggcgttct caacagcgac aatatcaaca
     3901 tcacgggcga aagctttgac tatggaccgt ggcgctttac ggcgttttgg gacccgaact
     3961 tcacggccgc ttactttgac caaggcggcc tttacgcgtt tggccggcag cctgaggcaa
     4021 tccactggga tctcgcgcaa ttagccggat gcctttcgct cattgcgcga agcagcgcgc
     4081 tatcggacaa acttgccgga tggagcgcac ggttcgaaga agaactcgtt gccgcgatgt
     4141 tgcggcgcct cggggtcgca cctggagtga atgaccgaga aattgttgcc gcgctgatcc
     4201 gagctctcgc aacccgggcc cagtcgatcg accggatctt cttcgactgg cgcggcggac
     4261 gagaccccgg cgacgaaact taccagagcg atgagtttcg caaattgtcg gacctgctcc
     4321 agcaccgac
//
LOCUS       DASRBJ010000274         3037 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_494804,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000274 DASRBJ010000000
VERSION     DASRBJ010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3037
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_494804"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1665
                     /locus_tag="VE968_07525"
     CDS             <1..1665
                     /locus_tag="VE968_07525"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HZU51708.1"
                     /translation="LAGINPITTQIYTTGRFSGGSNYVDTLSNLLQVPQYNFAIGGAS
                     TTGNGTAGLPGFPFEVQEFLSGGGTLGFPSVTTTLTRSDLVAISIGGNDSRYYQQGGG
                     TVAGAPAAAAAAVNSFQQNFSLVMQKGTPTISFLAGNAALLPEVATNPSAQAVRAAFS
                     NAYNSGAQQVLAGYARQGSIVHYLDLTQLAGDITANPAAYGIVGTVCPAIPDPTCIAN
                     SNAPYLFYVDDLHLTSAGFAIVGEYVVRQLAAPLTLQAPSDMELDVARQWGRTLSSRS
                     DLYGRGKLANGIRFYALGDAVQHDLPQSDTNSAFSVRSAGVTLGAEWAMGGGMVGIAG
                     NYSRPKVSFGNDAARIRGHSWQVGAYGSLSAAGLFGQAYAGYGSDHDRIERAGVVDDM
                     VARPSGSHAVAGAKGGYLVQAGPLGIGPMIALDYARARVDAYTETGDPALTLNVSRQS
                     LKAFTGQAGVEVRSEVAGFHPFLDATVERNFTGNDQLITFDQTDSPIIVNSWAIRRPT
                     ETYGRISGGTRAELFSGFSIDAFVSSTVGRKRGQEVGGNIGVSARF"
     gene            complement(1662..>3037)
                     /locus_tag="VE968_07530"
     CDS             complement(1662..>3037)
                     /locus_tag="VE968_07530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HZU51709.1"
                     /translation="HYVTPGPTLKQAMEAIRHELAERLKELIAEGRLLEAQRLEQRTN
                     FDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPDNALLFIDESHQTVPQIGA
                     MARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQSVFVSATPGPWEMNETGGV
                     FSEQVIRPTGLIDPPVEIKPVEDQVDDLVNEAKETARKGYRTLVTTLTKRMAEDLTEY
                     LHEAGLRVRYMHSDVETLERIELIRELRLGVYDVLVGINLLREGLDIPECGLVAILDA
                     DKEGFLRSETSLIQTIGRAARNVEGRVILYADRVTGSMERALAETGRRREKQLEYNAA
                     HGITPESVKRNIADLLADVSERDHVLVDTGDEERTHLVGHNLKAYIADLEQRMRKAAA
                     DLEFEEAARLRDEIRRLEEDDLGIPQPDRAAPRPVGNSSEGKPGTRKGRFGKQQRTRF
                     GGRRGLA"
BASE COUNT          565 a          934 c          910 g          628 t
ORIGIN      
        1 ctcgctggca ttaatccgat cacgacgcag atctacacga cgggccgctt ctcaggcggt
       61 agcaattacg tcgatacact cagcaacctt cttcaggttc cgcagtacaa ttttgccatt
      121 ggcggtgcga gtacgaccgg aaatgggact gcagggcttc cgggctttcc tttcgaggtc
      181 caggagttcc tgtccggggg cgggacgctc ggttttccga gcgtaaccac cactttgacg
      241 cgaagcgacc tcgttgcgat ctccatcggc ggaaatgact cgcgttatta ccagcagggc
      301 ggcggcacgg tagctggcgc acccgcggct gcggctgccg ccgtaaacag tttccagcag
      361 aacttcagcc ttgtcatgca gaagggcact ccgacgatca gctttcttgc tgggaatgcg
      421 gccttgttgc ctgaggtggc gacaaatccg tccgcgcagg cagttcgcgc tgcattctct
      481 aacgcttaca attcaggagc acagcaggtt cttgctggct acgcgcggca gggttcgatc
      541 gtacattacc tcgatttgac gcaactcgca ggcgacatca cggcaaatcc cgctgcctac
      601 ggcattgttg gcacggtctg ccccgccata ccggatccga cctgcattgc gaattcgaat
      661 gcgccctatc ttttctatgt cgatgacctg cacctgactt cagcgggatt cgcgatcgtc
      721 ggtgaatatg tcgtacgcca gcttgccgcc ccactcaccc tccaagcccc ctccgacatg
      781 gaactcgatg tcgcgcggca gtggggccga acgctatcga gccgcagcga tctttacggg
      841 cgcggaaagc tagcaaacgg aatccgcttc tacgcacttg gcgacgcggt acagcacgac
      901 ctccctcaat cggacacgaa cagcgcgttc agcgtgcgga gtgcgggtgt aaccctcggc
      961 gcggagtggg cgatgggcgg cggtatggtc ggtatcgccg gcaattactc tcgtcccaaa
     1021 gtcagcttcg ggaatgatgc tgcgcggatt cgtggccaca gctggcaggt gggtgcgtat
     1081 ggcagcttga gtgcggcggg tctcttcggc caagcctatg ccggttacgg cagtgatcac
     1141 gatcggatcg agcgcgctgg cgtagtcgac gacatggtcg cgcgccccag cggaagccat
     1201 gctgtcgctg gtgcgaaggg cggttacctg gtgcaagctg ggccgttggg aattggccca
     1261 atgatcgctc tcgattatgc ccgcgcgcgc gtcgacgcgt acacggaaac cggcgatcct
     1321 gcgcttacgc tgaacgtcag ccggcaaagc ctcaaggctt tcacgggcca ggcaggtgtt
     1381 gaagtgcgca gcgaagttgc cggttttcat cccttcctcg acgctaccgt cgagcggaat
     1441 ttcactggta atgaccagct catcaccttt gaccagaccg actctccaat aatcgtcaac
     1501 agctgggcga tccgccgccc aaccgagaca tacggccgaa tatcgggcgg cactcgcgct
     1561 gaactcttca gcggcttcag catcgatgcg ttcgtctcga gcaccgttgg tcgcaagcgt
     1621 ggccaggagg tcggcggaaa tatcggcgtg agtgcccgct tctaggcgag gccgcggcga
     1681 ccgccgaagc gcgtgcgctg ctgctttcca aaacggccct tgcgcgtccc cggtttgcct
     1741 tcgcttgaat tgccgactgg acgcggtgca gctcgatccg gctgcgggat tccaagatcg
     1801 tcctcctcaa gacgtcgaat ctcgtccctg aggcgtgccg cttcctcaaa ctcaaggtcg
     1861 gctgcggcct tgcgcatccg ttgctcgagg tcggcgatat aggccttgag gttatggcca
     1921 acgagatgcg tccgttcctc atcgcccgtg tcgacaagaa cgtggtcgcg ctcggaaaca
     1981 tccgccaaca gatcggcaat gttgcgcttg acgctctcgg gcgtgatgcc atgcgccgca
     2041 ttatactcga gctgcttttc gcgccggcgc ccagtctccg cgagtgcgcg ctccattgag
     2101 cccgtaaccc tgtccgcata taaaatcacg cggccctcga cgttgcgcgc cgctcgaccg
     2161 atagtctgaa tgagtgacgt ctcggagcga aggaaacctt ccttgtcggc atcgaggatc
     2221 gcgacgagcc cgcattccgg aatatccagc ccctcgcgaa ggaggttgat cccgacaagc
     2281 acgtcataga cgcctaatcg aagttcgcgg atgagctcga tacgttcgag cgtctcaacg
     2341 tccgaatgca tgtaccgaac acgaagacct gcttcatgaa ggtactcggt gaggtcctcg
     2401 gccattctct tggtgagggt cgtgaccaga gtccggtacc ccttacgcgc ggtctccttc
     2461 gcctcattaa cgaggtcgtc gacctgatct tccaccggct ttatttcgac cggcgggtcg
     2521 ataaggccgg tcggtcggat gacctgctcg gagaacacac cgccggtctc gttcatttcc
     2581 caaggaccgg gcgttgcaga gacaaacacc gactggggcc gcatagcgtc ccactcgtta
     2641 aaccgcagcg gccggttgtc gatgcagctg gggagacgga atccgtattc cgcgagggtg
     2701 atcttccggc ggtggtcgcc acgggccatg gcgccgatct gcggcaccgt ctggtggctt
     2761 tcatcgatga acaacaaggc gttgtcgggc agatattcga acagcgtcgg cgggggctcg
     2821 cccggaagtc gaccagtgag gaaacgcgaa taattctcga tgccagcaca ggaaccggtt
     2881 gccgcgatca tctcgagatc gaaattcgtg cgctgctcga gcctctgcgc ttcaagcaat
     2941 cggccctcgg cgatcaattc tttgagccgc tccgcaagtt cgtgccggat cgcctccatc
     3001 gcttgtttca acgttgggcc gggggtcacg tagtgcg
//
LOCUS       DASRBJ010000275         4693 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_494826,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000275 DASRBJ010000000
VERSION     DASRBJ010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4693
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_494826"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            20..1180
                     /gene="rlmN"
                     /locus_tag="VE968_07535"
     CDS             20..1180
                     /gene="rlmN"
                     /locus_tag="VE968_07535"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HZU51710.1"
                     /translation="MPIPGAVDPVPVPRREPLRADGRVELVGLSKDQIRQELEAAGLD
                     ARQSKLRAKQLWHWIYNRGLMDFERMSDVAKPQRTWLHERFSISRPEVVEAQVSSDGT
                     RKWLLKTNDGHDFEMVFIPDADRGTLCVSSQVGCTLNCRFCHTGTMALVRNLEPSEIV
                     GQVMLARDALGEWPSQPEGRMLTNIVMMGMGEPLYNFDNVRDALKIVMDGDGLGLSRR
                     RITLSTSGVVPMMERAGQEIGVNLAVSLHAVTKQIRDEIVPLNRKYGIEQLLEACAAY
                     PGANNARRITFEYVMLKDKNDSDADAHELVRLIRKYKLPAKVNLIPFNPWPGAPYECS
                     SAERIRAFSNIIFEAGISAPVRTPRGRDIDAACGQLKTAAERKRRSHAAQPV"
     gene            1191..1931
                     /locus_tag="VE968_07540"
     CDS             1191..1931
                     /locus_tag="VE968_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HZU51711.1"
                     /translation="MALAAGAGCIGGAMNALAGGGTFATLPALIALGLPANIANATSN
                     VALLPGAATSAAEFRDELGPIGGLSIRVLSAVTFVGGLIGSTLLVMTPSRAFDFIIPW
                     LLLLALLVMLFGQRASDWLHARVSIGRRTLVVAQSLLAIYGGYFGGGVGLMTTATYGL
                     LAGSHPRSLFAVRTLMLAIANLAAAIVFVAVGLVRWFLCLPMLVGSIAGGWAGARLGR
                     RFSPRLVRSWTLLVTTATTIVFFIRAYR"
     gene            1978..2826
                     /locus_tag="VE968_07545"
     CDS             1978..2826
                     /locus_tag="VE968_07545"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007684453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygenase MpaB family protein"
                     /protein_id="HZU51712.1"
                     /translation="MLAPIRHALIKQVRSTFNDQSRGERPVPASDDALFPPGSVIRRV
                     HGDVTSMMVGGVAALLTQMLHPKALAGVWDHSDVGHDQLGRLRRTARFIAVTTYGHRD
                     SALAAVAKVNAIHAQVSGTLPDGRAYKATDPSLLAWVHVAGAMSFLDGWRRYAEPRMS
                     RADQDLYFAQTAEIARLLHADPVPVTRCGAEDLITSFQGELHCDQRTREFRDFVLEAP
                     AQSLPEAPVRILLMNAAVDLLPEFARRMHGLAKPMLPPIVRGATFGLARTIRWAFAGE
                     KYRRDK"
     gene            2898..4184
                     /locus_tag="VE968_07550"
     CDS             2898..4184
                     /locus_tag="VE968_07550"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HZU51713.1"
                     /translation="MSLIGRMIDKLLTKGSITLKLPGQSPQTYGRGGGKHLTVRFTDR
                     KVGFDIVRNPRLGLGEAYMDGRVIIEDGTILDLLDMITAANPWEDLGDGPPPLAKGKM
                     AFLRILKPNNLRRARRNVAHHYDLKDELYELFLDDDKQYSCAYFTNPGNSLEQAQLDK
                     KAHIAAKLALEPGQRVLDIGCGWGGMALFLHKVAKVDVLGITLSEHQLKIARQRAEAA
                     GVSDHVKFELIDYRMLSERFDRIVSVGMFEHVGAQHYDEFFRKCRSLLEPNGVMLLHT
                     IGRLGEATNSPDPFTDKWIFPGYHLPSLSQMCTASEKVRMIASDVETLRLHYAYTLRH
                     WLNRTIEARSKIEAMYDARFFRMWEFYLAGGIVMFENGAACNYQVQYVRDRNALPITR
                     DYMLEAERKYRELGEEPANQPKKTRSSGRKKALEEA"
     gene            complement(4228..>4693)
                     /locus_tag="VE968_07555"
     CDS             complement(4228..>4693)
                     /locus_tag="VE968_07555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010408227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="EF-hand domain-containing protein"
                     /protein_id="HZU51714.1"
                     /translation="RMMSRVHDAMEQRSSEHFGGRMHGPMVLNPSQMFDRLDSNHDGV
                     ISREEFMSAHARMHARMGGRQEGAATPTPGMSRHGPMLARWRSMGHEVGRGFIPRLFE
                     MADTNHDGRVSLQEAEAAALARFDRMDLNHDGRVTPEERRQARAMMREKRPG"
BASE COUNT          935 a         1413 c         1371 g          974 t
ORIGIN      
        1 gagcgctgaa acgaacctta tgcccattcc gggggctgtt gaccccgtgc ccgttccgcg
       61 acgcgaaccg cttcgagcgg acgggcgcgt ggaactcgtc ggattgtcga aggaccagat
      121 tcgacaagag ctggaagctg ccggcctaga cgcgcggcag tcaaagctcc gcgcgaaaca
      181 actttggcat tggatttaca atcgcggcct gatggacttt gaacggatga gcgacgttgc
      241 aaagccccag cgcacgtggc ttcatgagcg cttctcgatc tctcggcccg aggtcgtcga
      301 agcccaggtc tcatccgatg ggactcgcaa gtggctcttg aagacgaatg acggacacga
      361 tttcgagatg gtcttcatcc ccgacgcgga tcgcggcact ctttgcgttt cgagtcaggt
      421 cggctgcact ctcaattgcc gcttctgcca taccgggacc atggcgctcg tgcgcaacct
      481 tgagccgagc gaaatcgtcg gacaggtgat gctagcacgt gatgcgcttg gtgaatggcc
      541 aagtcagcct gagggccgca tgctcacgaa catcgtgatg atgggcatgg gtgaaccgct
      601 ctataacttc gacaatgtgc gcgatgcatt gaagatagtc atggatggcg acgggcttgg
      661 tctttcgcgt cggcggatca ccctatcgac cagcggcgtc gtgccgatga tggaacgggc
      721 cggccaagag atcggtgtca atcttgcggt ttccttgcat gcggtaacga agcaaatccg
      781 cgacgagatc gttccgttga atcgcaaata tggcatcgag cagctccttg aagcctgtgc
      841 ggcttaccca ggcgcgaaca atgcgcgccg gatcacgttt gaatatgtga tgttgaaaga
      901 taagaacgac agtgacgcgg acgcgcacga gcttgttcgc ttgatccgga aatacaaact
      961 tccggccaag gtaaatctca ttccgttcaa tccctggcca ggcgcccctt acgaatgctc
     1021 gagcgccgag cgcatccgcg catttagcaa catcattttc gaagcaggca tctcagcacc
     1081 ggttcgaacg cctcgcggga gagacatcga cgccgcttgc gggcagctca agaccgccgc
     1141 cgagcgcaag cggcgttcgc acgccgccca acctgtttga ccttcgtgcg atagcgctcg
     1201 cagcgggcgc gggctgtatc ggcggcgcaa tgaacgcgct cgccggcggc ggcacgttcg
     1261 caacgcttcc ggcactgatc gcccttgggt tgccggccaa tatcgcgaac gccacatcga
     1321 acgttgcgct tttgcccggt gcagcaacga gtgcggccga gttccgcgac gagcttgggc
     1381 cgattggtgg tctctcgatc cgcgtcctct cggcagtcac ctttgttggc gggttgattg
     1441 gaagcacatt gcttgtgatg accccatcgc gtgcgtttga cttcatcatc ccatggttgc
     1501 tgctgctcgc actgctcgta atgctattcg gacaacgcgc gtcggactgg ctgcacgccc
     1561 gcgtatcgat cggccggcgg acactggtgg tcgcccaatc attactcgca atttacggcg
     1621 ggtattttgg cggcggagtt ggcctcatga ccaccgccac ttatggcctc ctcgctggct
     1681 cccacccccg atcgctattc gcggtaagga cgctaatgct ggcgatcgca aatctcgcag
     1741 cggcaatcgt gttcgtcgcg gtcggccttg ttcgctggtt tctatgcctg ccgatgctcg
     1801 tcggatcgat cgcgggtggc tgggctggcg cgagactggg acgaagattt tcgccgcgac
     1861 tggtacgctc gtggacgttg ctcgttacca ccgcaaccac gatcgtcttt ttcatccgag
     1921 cgtaccgttg atgtcttctt cctctgcggc gagatcagtg cttggcagcg gccagccatg
     1981 ctagcaccca tccgccacgc tctcatcaag caagtccgct cgaccttcaa cgaccagtcg
     2041 agaggcgaac ggcccgttcc cgcgtcggat gatgcactgt tcccgcctgg atcggtcatc
     2101 cgtcgcgtgc atggcgacgt cacctcgatg atggtcggag gtgttgcagc actgttgacg
     2161 cagatgctgc acccaaaggc actcgccgga gtatgggacc atagtgatgt cggccatgac
     2221 cagcttggca gacttcgccg caccgctcgg ttcatcgcgg tgacgaccta cggacaccgc
     2281 gactcggccc tcgcagccgt ggccaaggta aatgccattc acgctcaggt cagcggtaca
     2341 ttgcccgatg gtcgagctta taaggcgacg gacccttcgc tgctcgcttg ggtccacgtc
     2401 gcgggtgcaa tgagctttct cgacggctgg cgacgttatg cggagcctcg gatgagccgt
     2461 gccgaccagg atctctattt tgcgcagacg gccgaaattg cccgactgct gcacgcggat
     2521 ccggttccgg ttacgcggtg cggtgcggaa gacttgatta cctcgttcca aggcgaactc
     2581 cactgtgacc agcggactcg agaatttcgg gattttgtcc tcgaggctcc ggcccaatct
     2641 ctgccggaag ctccggtccg tattctcctc atgaatgcag cggttgacct ccttccggag
     2701 tttgcaagac gcatgcacgg cctcgctaaa ccgatgcttc cgcccattgt ccgtggggcg
     2761 acattcgggc tggcgcgtac gatccgatgg gctttcgcgg gtgagaaata ccgcagagac
     2821 aagtgaattg cgctcgatca attgccccga cgctcagcgc gtggcatcgg gcggagaaag
     2881 attaatggag cctcgaaatg tcgttgatcg gcagaatgat cgacaagctg ctgacaaagg
     2941 gcagcatcac actcaagtta cccggtcagt ctccgcagac ttacggccgc ggcggaggca
     3001 agcacctgac ggttcgcttt accgaccgca aggttggctt cgatatcgtc cgaaaccccc
     3061 gtcttgggct tggtgaagcc tatatggacg gccgcgtcat catcgaggat gggaccattc
     3121 ttgaccttct cgacatgatc acggcggcaa acccctggga ggatctcggt gatgggccac
     3181 cgccgcttgc gaaaggcaag atggcattcc tgaggatctt gaagccgaac aatctccgac
     3241 gagcacgcag gaacgttgcc caccattacg atctcaagga cgaactctac gagctcttcc
     3301 tcgacgacga caagcaatat agctgcgcct atttcacgaa cccaggcaac agtctcgagc
     3361 aggcgcagct cgacaagaaa gcacatattg cggccaagct cgcgcttgag ccaggacagc
     3421 gcgtactcga cattggctgc ggctggggcg gcatggcgct cttcctgcac aaggttgcca
     3481 aggtggatgt gctcgggatc accttatccg agcaccagct caaaattgca cggcaacgcg
     3541 ccgaggccgc cggcgtgtcg gaccatgtga aattcgaact catcgattat cgaatgttga
     3601 gcgaacggtt cgatcggatc gtttcggttg gcatgttcga gcatgtcggc gcgcagcatt
     3661 acgacgagtt tttccgtaaa tgccgaagcc tcctcgaacc caacggagtg atgctgctgc
     3721 acaccattgg tcggctgggc gaagcaacaa actcccccga cccattcacg gacaagtgga
     3781 ttttccctgg ataccatctc ccctcgctca gtcagatgtg caccgcgagc gaaaaggttc
     3841 gaatgattgc gagcgacgtc gaaacgctcc gactgcatta tgcttacacg ctgcgtcact
     3901 ggctcaaccg tacaattgaa gcacgctcaa agatcgaggc gatgtacgac gcgcgctttt
     3961 tccggatgtg ggaattctac ctcgcgggcg gaatcgtgat gttcgagaac ggtgctgcct
     4021 gcaattacca ggtccaatat gtccgcgatc gaaatgcgct accgatcacg cgtgactaca
     4081 tgctcgaagc ggaacgcaaa tatcgcgagc tcggtgaaga gccggctaac caacccaaga
     4141 agacccgtag cagcggccgc aagaaagcat tggaagaagc ctgaacttgc aattgaatgc
     4201 ttaaggcccg ttcgcgccgc agcgatccta tcctgggcgc ttctcacgca tcatggcacg
     4261 cgcctgtcgg cgctcctcgg gcgtcactcg cccgtcgtgg ttaagatcca ttcggtcaaa
     4321 acgcgcaaga gccgcagctt ccgcttcctg cagtgacact cggccatcat gattcgtgtc
     4381 tgccatctcg aacaatcgag gaatgaagcc gcggccgact tcgtggccca ttgagcgcca
     4441 gcgcgccagc atcgggccgt gccgggacat gcccggagtg ggcgttgccg cgccttcttg
     4501 ccggccgccc atccgcgcat gcattcgcgc atgagcgctc atgaattctt ctcggctaat
     4561 cacgccgtca tggttggaat ccagccggtc gaacatctga gatggattta gcaccattgg
     4621 gccgtgcatc cggccgccaa agtgctcgct agatcgctgc tccattgcgt cgtgcactcg
     4681 gctcatcatg cga
//
LOCUS       DASRBJ010000276         3711 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_546939,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000276 DASRBJ010000000
VERSION     DASRBJ010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3711
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_546939"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2370
                     /gene="infB"
                     /locus_tag="VE968_07560"
     CDS             <1..2370
                     /gene="infB"
                     /locus_tag="VE968_07560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013039960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HZU51715.1"
                     /translation="EPAPPPPVAEAPKPAPRPAPPAPQPRRPSPQDDISARKEMQARL
                     LREAEEARMTALEEARRRDEQARNSASEEERRRAEENRRAEEAAIEEARLRAAQEEEA
                     RQAAEAAAASVAAATVEVEAPPKKVEEEEEPREVRRPSGHAPAPRRPEPTRPSRGRDD
                     HRQRGKLTVTRALSDEDDSRARSLAALRRAREKEKRHHMESGPSAKQVRDVVVPEAIT
                     VQELANRMAERGADLVKALFKMGMPVTLTQTIDQDTAELLVTEFGHRIKRVSESDVDI
                     DTSADVDASETLKTRPPVVTIMGHVDHGKTSLLDAIRGENVVSGEAGGITQHIGAYQV
                     QLPDKSKITFLDTPGHEAFTEMRARGANVTDIVVLVVAADDGLRPQTIEAINHTKAAG
                     VPMIVAINKIDKPEARPQKVREELLQHEIIVEEMGGEVQDVEVSATKKTNLDKLLEAI
                     QLQAELLELKANPDRAAEGTVVEAKLDKGRGPLATVLVERGTLRVGDVFVAGASSGKV
                     RAMIDDKGRQVKEAGPSVPVEVLGLSAVPAAGDPFTVVENEARAREVAAYRQGVLDRK
                     RTTSAPVSLEHMFASHASTTMEFPLVIKADVQGSVEAIVHALNRLSTDEIKVRILHSG
                     VGAITESDVTLASASGAPIIGFNVRPNAKAREVAERNKVEFRYYDVIYHLTDWVKSAM
                     GGQLGPEIIETVVGRARVQEVFPAGKKDKAAGLLVLEGVIRKGLNARLTREDVIVSKT
                     TISSLRRFKDDVAEVRAGLECGVLLADTNDIKAGDSLEVFEVEERARTL"
     gene            2449..2841
                     /gene="rbfA"
                     /locus_tag="VE968_07565"
     CDS             2449..2841
                     /gene="rbfA"
                     /locus_tag="VE968_07565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HZU51716.1"
                     /translation="MRRQETAEGRSVRLLRIGEQVRHVLSELLQRGEVHDDVLNSHLV
                     SITEVRMSPDLRHATVFVKPLLGEDEEAVLKALRQNTAFLQREVAHRIRTKYAAKLKF
                     IADESFDEGSHIDQILRSRHVAQDLEGE"
     gene            2838..3401
                     /locus_tag="VE968_07570"
     CDS             2838..3401
                     /locus_tag="VE968_07570"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HZU51717.1"
                     /translation="MNSGLPSDHRGKLDERIAGAGCSAEPFSEAFRDALRQACAEDRE
                     IWQIYSNNFGPDGFDKSLDGYLSNPRNRTFVLFEGDELAGMSSFLGIDLERQVLEIGG
                     TYYRPKFRGTGFNGRVKEMMLRRAFECGIRRVEFRVDKRNARSQAAVRKLGAVREGVL
                     RSERITWTGHVRDTVLFAILRDEYLSS"
     gene            complement(3452..>3711)
                     /locus_tag="VE968_07575"
     CDS             complement(3452..>3711)
                     /locus_tag="VE968_07575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51718.1"
                     /translation="CLASTVQRRSFATKGGPTMYKPALLVAVAGLIVSPVAASAKGCL
                     KGAAVGAVAGHVAGHHGKAGAAAGCAIGHHKAAKAAKRKGK"
BASE COUNT          778 a         1127 c         1169 g          637 t
ORIGIN      
        1 gagccggcac cgccgccacc ggtcgccgaa gctccaaagc cggcgccgcg gccagctccg
       61 ccggctccgc agccccgtcg accgtcgccg caggacgaca ttagcgcgcg caaggagatg
      121 caggcacgcc tgctccgcga ggccgaggaa gcgcgcatga ccgcgctcga ggaagcgcgt
      181 cgccgtgacg agcaggcacg caattccgcg tccgaagaag agcgtcgccg tgccgaagag
      241 aaccgccgcg ccgaagaagc ggcgatcgaa gaggcgcgcc ttcgcgccgc gcaggaagaa
      301 gaagcgcgcc aagctgccga agctgctgcc gcaagcgttg ccgcagcaac ggtcgaggtc
      361 gaagctcctc ccaagaaggt cgaagaagag gaagagcccc gcgaggttcg ccgcccgtca
      421 ggccatgcac cagcgccgcg cagacccgaa ccgacccgcc ccagccgggg tcgcgacgat
      481 caccgtcagc gaggcaagct cacggttacg cgcgcattgt ccgacgaaga tgacagccgt
      541 gcccgttcgc tcgccgctct tcgccgcgca cgcgaaaaag aaaagcggca tcacatggag
      601 tccggcccgt cggccaagca ggtgcgcgac gtcgtggttc ccgaagcaat caccgtccag
      661 gaacttgcaa accgcatggc cgaacgcggc gctgacctcg tcaaagccct gttcaagatg
      721 ggcatgccgg tcacgctaac gcagacaatc gaccaggata cggcagagct cctcgtcact
      781 gagttcgggc atcgcatcaa gcgtgtcagc gaaagcgatg tggacatcga cacgagcgcc
      841 gacgtggatg cttccgaaac attgaagacc cggccaccgg tcgtcacgat catggggcac
      901 gtcgaccacg gaaagacctc gcttctcgat gcgatccgcg gcgagaacgt cgtatccggc
      961 gaggctggag gaattaccca gcacatcggt gcctaccagg tgcagctccc cgacaaatcg
     1021 aagatcacct tcctcgacac gcccggccac gaggcattca ccgagatgcg tgcgcgcgga
     1081 gccaatgtca ccgacatcgt cgtgctggtg gttgctgcgg atgacgggct tcgaccgcag
     1141 accatcgagg cgatcaacca cacgaaggcc gctggcgtgc cgatgatcgt ggcaatcaac
     1201 aagatcgaca agcccgaagc gcgtccgcag aaggtccgag aggaactgct tcagcacgag
     1261 atcatcgtcg aggaaatggg cggcgaggtc caggacgtcg aagtctccgc gacgaagaag
     1321 accaatctcg acaagctcct cgaggcgatc cagctccagg cggagctttt ggaactgaag
     1381 gccaaccccg atcgtgctgc cgaaggaacc gttgtcgaag ccaagctcga caagggtcgc
     1441 ggtccgcttg cgacggtgct cgtcgagcga ggaacattgc gggtcggtga cgtattcgtt
     1501 gccggcgcat caagcggaaa ggtccgcgcg atgatcgacg acaagggacg ccaggtcaaa
     1561 gaagctgggc cgtcggtccc ggtcgaagtt cttggtctat ccgccgttcc ggcggcgggc
     1621 gatccgttca cggtcgtcga gaacgaggct cgggcacgcg aggtcgccgc ttaccggcag
     1681 ggcgtccttg accggaagcg cacgaccagc gctccagtca gtctcgagca catgtttgca
     1741 agtcatgcgt cgaccacgat ggagttccca ctcgtgatca aggccgacgt ccagggttcg
     1801 gttgaagcca ttgtccatgc gctgaaccgg ctctcgaccg acgagatcaa ggtccgcatt
     1861 cttcactcgg gtgtcggtgc aatcaccgag agcgacgtca cgctggcaag cgcaagcggc
     1921 gcaccaatca tcggcttcaa cgttcgtccg aacgccaaag cgcgggaggt tgccgaacgc
     1981 aacaaagtcg agttccgcta ttatgacgtc atctatcacc tgacggactg ggtgaagtcg
     2041 gcgatgggcg gtcagctcgg gccagaaatc atcgagacgg tcgttggccg tgcgagggtg
     2101 caggaggtct tccccgcggg caagaaggac aaggcggccg gcttgctggt gctggaaggc
     2161 gtaatccgca agggcttgaa tgctcgtctc acccgagagg acgtcatcgt ttcgaagacg
     2221 acgattagct cgctaaggcg cttcaaggac gatgtcgcgg aggtgcgcgc gggtcttgaa
     2281 tgcggcgtgc tgcttgccga cacgaacgac atcaaggcgg gcgacagcct tgaagtgttc
     2341 gaggtcgaag agcgcgccag gacgctttag ccgcttcacg gttgaaacag gtactggcgt
     2401 tggccgcgcg agtaatcgcc tgatgttcta catggaggca agtcgctgat gcgtcggcag
     2461 gaaacggcag aaggtcgctc ggttcgactt ttgcggatcg gcgaacaggt tcggcacgtg
     2521 ctgagtgaat tgcttcagcg cggcgaagtc catgacgatg tgcttaactc gcatttggtc
     2581 agcatcacgg aagtccggat gtcgcccgat cttcgccatg caacggtttt cgtaaaaccg
     2641 ctccttggcg aagacgagga agcggtcctc aaggcgcttc ggcaaaacac ggctttcctc
     2701 cagcgcgaag tcgcgcatcg catccgcacg aaatatgcag ccaagctcaa gttcatcgcg
     2761 gatgaaagct ttgatgaagg aagccacatc gatcagatcc tgcgctcaag acatgtcgct
     2821 caggatctcg agggcgaatg aactcaggtc tgccgtccga ccatcggggt aagcttgacg
     2881 agcggatcgc cggcgcaggc tgcagtgcgg agcctttttc tgaagcgttc cgcgacgcgc
     2941 ttcgacaagc ttgcgccgaa gatcgcgaga tctggcaaat ttattccaac aacttcggcc
     3001 ccgatggctt cgacaaaagt ctcgacggct acctctccaa tccgcgcaac cgaacgttcg
     3061 tgctgttcga aggcgatgag cttgccggca tgtcgagttt tcttggtatc gacctggagc
     3121 gacaggtgct ggagatcggg ggcacttatt atcggccaaa gttccgcggc accgggttca
     3181 acggccgggt caaggagatg atgctgaggc gagcgttcga atgcggaatt cggcgcgttg
     3241 aattccgtgt cgacaaacga aatgcgcgca gtcaggcggc cgttaggaaa ctcggcgccg
     3301 ttcgcgaggg tgttcttcgc tcagagcgga tcacctggac cggtcacgtg cgcgacacgg
     3361 tcctgttcgc catcttgcga gacgaatatc tcagtagcta gaaccgtttt tcgcaagatc
     3421 cgcccgtctc aagatttcgt ccggctgcga cttacttccc cttgcgcttg gcagccttgg
     3481 ctgccttgtg gtggccgatt gcgcacccgg cagcagctcc tgctttcccg tggtgtccgg
     3541 cgacatgacc ggcaacagca cccacggcag cgcccttgag gcagccctta gcgctcgcgg
     3601 caacgggcga tacgattagt ccagcgaccg ccaccaacag tgcaggcttg tacatcgtgg
     3661 gtcctccttt tgtggcaaag cttcgccgct gaactgtcga ggccaggcat t
//
LOCUS       DASRBJ010000277         3534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_284345,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000277 DASRBJ010000000
VERSION     DASRBJ010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3534
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284345"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1020
                     /locus_tag="VE968_07580"
     CDS             <1..1020
                     /locus_tag="VE968_07580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HZU51719.1"
                     /translation="LAAGAIIAVEDGQQVEAGEVLARMPREAARTRDITGGLPRVAEL
                     FEARKPKENAIIAKVSGKVTFMRDYKAKRKIAIVPDDGSEPVEYLVPKSKMIEVQEGD
                     YVKRGDNLVGGSPDPHDILEVLGVEALAEYLVSEIQEVYRLQGVKINDKHIEVIVRQM
                     LQKVEITDGGDTTLLAGEQVDRDEMDETNAKLGKGQRPAEGKPVLLGITKASLQTRSF
                     ISAASFQETTRVLTEASVQGKVDTLQGLKENVIVGRLIPAGTGAGMNRLRVAASSRDT
                     ALRAAQRRMQEALIAPDSAEELRAAELARSPRDDTAGIGDDPLAEVAPSGHGLDADAG
                     DYLQD"
     gene            complement(1108..1248)
                     /locus_tag="VE968_07585"
     CDS             complement(1108..1248)
                     /locus_tag="VE968_07585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006955807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin EcnA/B family protein"
                     /protein_id="HZU51720.1"
                     /translation="MIQKVAALALIGGCLVVAACNTVRGAAADVNSAATCTQNAMHGG
                     KC"
     gene            complement(1314..1457)
                     /locus_tag="VE968_07590"
     CDS             complement(1314..1457)
                     /locus_tag="VE968_07590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006955807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin EcnA/B family protein"
                     /protein_id="HZU51721.1"
                     /translation="MFQKVTTVLLIGTALAVAACNTVRGAARDVNSVANCTENAMNGT
                     HRC"
     gene            complement(1546..2340)
                     /locus_tag="VE968_07595"
     CDS             complement(1546..2340)
                     /locus_tag="VE968_07595"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004799 - thymidylate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HZU51722.1"
                     /translation="MRQYLDLMKRILDGGVEQQDRTGTGTRSLFGAQMRFDLGDGFPL
                     LTTKKLHLRSIIVELLWFLRGDTNVRWLNERRVSIWDEWADTDGNLGPVYGKQWRDWE
                     SADGAHIDQISELVALIKRDPFSRRQIVTAWNPGEISKMALAPCHCLFQTQVAAGRLN
                     LQLYQRSADFFLGVPFNIASYALLTHMLARECALEPGVFVWTGGDCHLYSNHLEQARL
                     QLTREPRSLPKLLIKDRGQGLFDYEPDDFLFENYDPHPHIAAPVAV"
     gene            complement(2433..3227)
                     /locus_tag="VE968_07600"
     CDS             complement(2433..3227)
                     /locus_tag="VE968_07600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HZU51723.1"
                     /translation="MSSRALVLPRAHRDKAAYQGIARVDAGLGRGRVSPRAKRKLVAC
                     LAALVGACRPHPSEPHFPSAHRDVAPIVGGTFSTEDARDRAGEAEDVMELAGVKPGMS
                     VADVGAGEGYYTVRLARVVGPKGRVLAEDILPQIRDQLADRVQRERLDNVGVKLGTPD
                     DPTLPPASFDRVFLVHMYHEVASPYAFLWHMRGGVKKDGLVIVVDSNRPVRQHGIPPA
                     QVKCEFAALGLQPVKYSVLSGGDAYFMSFRIAGPRPAPEQIQPCRQ"
     gene            complement(3217..>3534)
                     /locus_tag="VE968_07605"
     CDS             complement(3217..>3534)
                     /locus_tag="VE968_07605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor-like protein"
                     /protein_id="HZU51724.1"
                     /translation="ACQNERSQHKNRASAMKQLKARLYEAELQKREAEANAANAAKTD
                     IGWGHQIRSYVLQPYQLVKDLRTGVTSTSPSDVLDGDLDRFMAAALSQRVTGETVEVE
                     DVE"
BASE COUNT          719 a         1069 c         1094 g          652 t
ORIGIN      
        1 ctcgcggccg gcgccatcat cgcggtcgag gatggacagc aggtggaggc cggcgaagtg
       61 ctggcacgaa tgccgcggga agccgcgcgt acgcgtgaca tcaccggtgg tctgccgcgc
      121 gttgccgaac tcttcgaggc ccgcaagccc aaggagaatg cgatcattgc caaggtctcg
      181 ggcaaggtca ccttcatgcg cgactacaag gcgaagcgta agatcgcgat cgttcccgac
      241 gacgggtcgg agccagtcga gtatctcgtt ccaaagtcga agatgatcga ggtccaggaa
      301 ggcgactatg tgaagcgcgg cgacaacctt gtcggcggtt cacccgaccc gcacgacatc
      361 ctcgaggtgc tcggggtcga agcgcttgcc gaatatctcg tgagcgagat ccaggaggtc
      421 tatcgacttc agggcgtgaa gatcaacgac aagcacatcg aggtgattgt tcgccagatg
      481 ctgcagaagg tcgagatcac ggacggcggt gacaccacct tgctcgccgg cgaacaggtc
      541 gatcgtgacg aaatggacga gacgaacgcg aagcttggaa aggggcagcg ccccgccgaa
      601 ggcaagcccg tgttgctcgg catcacgaag gcctcgctcc agactcgaag cttcatttcc
      661 gcggcatcct tccaggaaac gacacgagtg ctcaccgagg cttcggtgca gggcaaggtc
      721 gatacgctgc aagggctcaa ggagaatgtg atcgttggcc ggctcatccc ggcaggcact
      781 ggcgctggca tgaaccggct gcgcgtcgct gcctcgtcac gcgacaccgc tcttcgtgcg
      841 gctcagcgcc gcatgcagga agcgttgatc gctccggact cggccgagga acttcgtgcc
      901 gccgaactcg cgcgcagccc gcgtgacgac acggcgggga tcggcgacga cccactcgcg
      961 gaagtcgctc cgagcgggca cggcctcgat gcggatgccg gcgattacct gcaggactaa
     1021 gtaaaagccg ccgagaggcg actgaaaatg aagaaccccg ccggatcagc tccggcgggg
     1081 ttctttcgtt ctagcgatcg gtgcgtccta gcacttgccg ccatgcatcg cgttctgcgt
     1141 gcatgtcgcg gccgaattca cgtctgccgc cgcaccgcga acggtgttgc acgccgcgac
     1201 gacgaggcag ccaccaatca acgccaatgc cgctaccttc tgaatcattt tcactcctcc
     1261 attcagggtc cggaacgaca atgaatcacc gaaggagcgg cttgtctagc aacttagcag
     1321 cgatgggttc cgttcatcgc attttcggtg cagttcgcga ccgaattgac gtcgcgggcc
     1381 gcgcctcgaa cggtgttgca cgcggccact gcaagtgcag tgccaatgag aagcacggtc
     1441 gtcactttct ggaacatggc ttgtcctctc ctgtctgacg gcagaacgta acgcggcgtt
     1501 tcacaaacgg ctccatcaac gccgctttat tgtgtctgct agccgtcaga cggcgaccgg
     1561 cgcagcgatg tgaggatggg gatcgtagtt ctcgaacagg aagtcatcgg gttcataatc
     1621 gaacagtccc tggccccgat ccttgatcag cagtttcggc agcgatctcg gctcacgagt
     1681 aagctggagc cgcgcctgct caaggtggtt cgagtagaga tggcaatcgc ctcccgtcca
     1741 gacaaatacc ccgggttcta acgcgcactc gcgagcaagc atgtgcgtaa gaagagcgta
     1801 ggacgctatg ttgaagggga caccgaggaa aaaatcggcg ctacgctggt acagctgcag
     1861 attgaggcgc cccgcggcga cctgtgtctg gaaaaggcag tggcacggtg ccagagccat
     1921 cttcgaaatc tcacccgggt tccacgccgt gacgatctgg cggcgcgaaa atggatcgcg
     1981 cttgatcaac gcgacgagct cggaaatctg atcgatgtgg gcaccgtcgg cactttccca
     2041 gtcgcgccat tgcttgccgt aaacgggtcc gaggttacca tcggtatccg cccattcatc
     2101 ccagatgctg acgcgtcgct cgttcagcca gcgaacattc gtgtctccgc gcaagaacca
     2161 cagaagctcg acgatgatcg agcgcaagtg gagcttcttg gtcgtgagca gcggaaagcc
     2221 atcgccgaga tcgaacctca tctgcgctcc gaacagggat ctggtcccgg ttccagttcg
     2281 gtcttgctgc tcaacacccc cgtcgaggat gcgcttcatg agatcgagat attggcgcat
     2341 cacgcgaccc tagtcgggct cggcaacggc cgaaagggga ttgatcgcgc gctgaactcg
     2401 ctcctcggcg aaaggcgcgg aaacattaga acctactggc ggcagggctg gatttgctcg
     2461 ggcgcaggtc ttggtccggc gatcctgaac gacatgaaat aggcgtcgcc accggagaga
     2521 acactatatt tcacgggttg gagcccaagc gctgcgaact cgcacttgac ctgcgccggg
     2581 ggaatgccgt gctgtcggac tggacggttg gaatcgacga caatgacgag cccgtccttt
     2641 ttcacgcctc cgcgcatgtg ccacaggaaa gcgtaaggac tcgccacctc atgatacatg
     2701 tggactagga agacccggtc gaacgatgcc gggggcaagg tcggatcgtc gggagttccg
     2761 agcttcacgc caacattgtc gagacgctca cgctggaccc ggtcggcaag ttggtcacga
     2821 atttgaggaa ggatgtcctc ggcgagcact cggcctttgg gtccaaccac acgtgccagc
     2881 ctcaccgtat aataaccttc tcccgcgccg acgtcggcaa ccgacattcc gggcttcacg
     2941 ccggcgagct ccatcacgtc ttcagcttca ccggcgcgat cgcgcgcgtc ctctgtcgag
     3001 aacgtaccgc caacaatcgg ggcaacgtca cggtgagcac tgggaaaatg cggttcggat
     3061 ggatgcggcc ggcacgctcc aacgagcgcg gcgaggcagg ctaccagttt gcgcttggct
     3121 ctcggcgaaa ctcggccgcg gccaaggcca gcgtcaacac gggcgatgcc ttggtacgca
     3181 gccttgtccc gatgtgctcg aggaagcacg agcgccctac tcgacatcct cgacctcgac
     3241 cgtttcgcca gtcacgcgct gggacaaagc ggcggccatg aaacgatcga gatctccatc
     3301 aaggacgtcg cttgggctcg tcgatgtcac accggtgcgc aggtctttca cgagctggta
     3361 cggctgcagc acgtacgagc ggatctggtg accccagcca atatcggtct tggcggcatt
     3421 ggcggcattg gcctcagctt cccgtttctg gagttcggct tcgtagagcc gggctttcaa
     3481 ttgcttcatg gccgatgcgc ggttcttgtg ctgcgagcgc tcgttctgac aggc
//
LOCUS       DASRBJ010000278         2001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_91796,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000278 DASRBJ010000000
VERSION     DASRBJ010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91796"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..316
                     /locus_tag="VE968_07610"
     CDS             <1..316
                     /locus_tag="VE968_07610"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HZU51725.1"
                     /translation="TKKADVSQGPFRWLTVTSPEEPDGTQLQLALNDNPAAKTYQQAL
                     FQQGQPAAMFFTDDAKGDYERIKAAGGEFTMAPTEVPGSTIARLSDGCGNLIQITQLA
                     RW"
     gene            339..770
                     /locus_tag="VE968_07615"
     CDS             339..770
                     /locus_tag="VE968_07615"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HZU51726.1"
                     /translation="MNETLAETRSVVVEREMPFPPEKIWRALTQPHLIAEWLMKNDFV
                     PLVGHRFNLRAEWGGVLECEVLAVEPNKTLSYTWVFAHEDPAFNLKSIVTFTLTPTST
                     GTRLRMEQTGFRPDQKQGYLGAKVGWHRFLAKLEQLLGRTQ"
     gene            836..1234
                     /locus_tag="VE968_07620"
     CDS             836..1234
                     /locus_tag="VE968_07620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HZU51727.1"
                     /translation="MKKSSSLKAKSPSELIDERIEELGDWRGQMLRRLRDLIRQADPE
                     IVEEWKWRGVPVWYHDGMVCTGETYKNAVKLTFAKGAALKDPSRLFNSSLEGNVRRAI
                     DFREGEEIDEDALMSLVRAAVSLNKSKAQD"
     gene            complement(1288..>2001)
                     /locus_tag="VE968_07625"
     CDS             complement(1288..>2001)
                     /locus_tag="VE968_07625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51728.1"
                     /translation="NYHRPSFFGIEAERELSTFAATFRPRIHDPQIRGMENGPYSPEG
                     FLRGWNFGNTFGIRAGLLKKPDVSAASLPTAELNAAWAWNYHRAERSDALKDRCFVPS
                     VDFFRIEGRTSRVALWPPGMPIWLPRVDYVLVGSTISGQKRYGLAPWRDVLDVVRRAG
                     FDTTKDPLRLEYRVTPPAIANWVENIPCTDLDALRREYLRPDQILDRELLAAARESID
                     ENEGEFRIVREILNPETGS"
BASE COUNT          436 a          582 c          618 g          365 t
ORIGIN      
        1 tacgaagaag gccgatgtca gccaggggcc gtttcggtgg ctgacggtta cctcgcccga
       61 agagccggat ggaacgcagc tgcagcttgc gctcaacgac aacccggcgg caaagacgta
      121 tcagcaagcc ttgttccagc agggccagcc cgcggccatg ttcttcaccg atgatgccaa
      181 gggcgactac gagcgcatca aggcggcggg tggcgagttc accatggcgc cgaccgaagt
      241 gccgggctct accatcgcgc gactgagcga cggttgcggc aatctcattc aaatcaccca
      301 attggcgcgc tggtagggcc gcatcgaagg acagatagat gaacgaaacg ttggccgaaa
      361 cgcgctccgt cgtcgtcgaa cgcgagatgc ctttcccgcc ggaaaagatc tggcgcgcgc
      421 tcacgcaacc gcatctcatc gcggaatggc tcatgaagaa cgacttcgtg cctctcgtcg
      481 gccaccgttt caaccttcgc gccgagtggg gcggcgtgct ggagtgcgag gtccttgccg
      541 tcgagccgaa caagaccctg tcctatacgt gggtttttgc gcatgaggac ccagccttca
      601 atctgaagag tatcgtcacc tttaccctca cgccgacgag caccgggacc cgtttgcgca
      661 tggagcagac gggcttccgg cccgatcaga aacaaggcta tctcggcgcc aaggtcggat
      721 ggcaccgttt cctcgcaaaa ctggagcagc tgttggggag gacgcagtga agccgttcga
      781 cctcatcgtc tcggcgcaac tcccgtaaag aagaacgagg cggagaaagg caccaatgaa
      841 gaagagctcg tcgctaaagg ctaaatcccc atccgaactg atcgacgaaa gaatcgagga
      901 actgggcgac tggcgcggtc agatgctccg ccggcttcgc gatttgatcc ggcaagccga
      961 tcccgaaatc gtcgaagagt ggaagtggag aggggttccg gtgtggtacc acgacggaat
     1021 ggtctgcacg ggagagactt acaagaacgc cgtgaaattg accttcgcca aaggcgcggc
     1081 tctgaaggat ccttcgcggc tcttcaactc gagtctcgag gggaatgtca ggcgcgcgat
     1141 cgacttccgc gagggcgagg agatcgacga ggacgcgctg atgagcctcg ttcgcgctgc
     1201 cgtgagtctc aacaagtcga aagcgcaaga ctgatcgacc aaactgatcg agcccataca
     1261 aatcggctcg ggcgccgcgc cgttcgatca ggagcctgtc tccgggttga ggatttcgcg
     1321 cacgatccgg aattcacctt cgttttcatc gatgctctcg cgagcagctg caagaagttc
     1381 gcgatcgagg atctgatccg ggcgcagata ttcgcgccga agtgcgtcga ggtccgtgca
     1441 aggaatattt tcgacccagt tcgcgatcgc gggaggcgtg acgcgatatt cgagcctgag
     1501 cgggtctttc gtcgtatcga acccggcgcg ccgaacaaca tccagtacgt cgcgccaggg
     1561 cgcgaggcca tagcgctttt ggcccgaaat ggttgagccc accaggacgt aatcaactct
     1621 cggcagccag atcggcattc cgggaggcca gagggcgacg cggcttgtgc gtccctcgat
     1681 acggaagaaa tcgactgacg ggacgaaaca gcgatccttg agcgcatcgc tgcgctcggc
     1741 gcgatgatag ttccaagccc atgccgcgtt cagctccgcg gtcggcagag acgcggcgct
     1801 gacatcgggc ttcttcagaa ggcctgcacg gataccgaat gtgtttccga aattccagcc
     1861 gcgtagaaat ccttcgggtg aataaggccc gttttccatg cctcggattt gcggatcatg
     1921 aatccgcggc cggaacgtcg ccgcgaaggt cgacagttcc ctttccgctt cgatgccaaa
     1981 aaagctgggg cgatgataat t
//
LOCUS       DASRBJ010000279        12368 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_386178,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000279 DASRBJ010000000
VERSION     DASRBJ010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 12368)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12368)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12368
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386178"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..765
                     /locus_tag="VE968_07630"
     CDS             <1..765
                     /locus_tag="VE968_07630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HZU51729.1"
                     /translation="LITGPNMGGKSTFLRQAALILVLAQAGSFVPASRATLGIIDRLF
                     SRVGASDNLARGRSTFMVEMVETAAILTQATPRSLVILDEIGRGTSTYDGLAIAWAVV
                     EAMHDEVKCRTLFATHYHELTRLAGRLESLSLHHVRAREWKGELVLLHEVAPGAADRS
                     YGIAVAKLAGLPSKVVERARAVLEKLEAGRNATGGIAAGLDELPLFAAVAGNPPTKDP
                     LVTALESIDPDRLTPREALDKLYELKRLAQSPEGGL"
     gene            complement(741..1976)
                     /locus_tag="VE968_07635"
     CDS             complement(741..1976)
                     /locus_tag="VE968_07635"
                     /inference="COORDINATES: protein motif:HMM:NF016974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018193 - peptidyl-amino acid modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl/asparaginyl beta-hydroxylase
                     domain-containing protein"
                     /protein_id="HZU51730.1"
                     /translation="MTRLAAPVPAKAARPANWQSIASPMQLQRPDVHAEMQRGITALR
                     RSDFPTARDAFAQVVGAPDAPAQAWLFYAQGCAGCRDWERSLHALNRVAEVDPQNPFV
                     MLMKADIFAEKGDDRAAVSFYRAAIRRCAQLQQMPGDLPQRLQRATAMLARLEQRFEE
                     WLRAHLADEGLAQVPPRVSEALAIASDRQPIYLQQPTSFYFPGLPQQAWYSPEQFPWV
                     AKLEAAVPEMRAEIERVLAGEQGLEPYVQEHSERASQGHSLLNDASWSAFHLWKNGKP
                     VEENASRCPLIMRLLELPPIPRIAGRSPMALISILKPGTHIAPHTGMLNTRLICHIPL
                     VVPDGCRLRVGGETRQVVEGKAMIFDDSIEHEAWNNSDAVRAVLLFEIWRPELSDEER
                     IALSAMFEAASGYNPPSGD"
     gene            1992..4730
                     /locus_tag="VE968_07640"
     CDS             1992..4730
                     /locus_tag="VE968_07640"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008773 - [protein-PII]
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="[protein-PII] uridylyltransferase"
                     /protein_id="HZU51731.1"
                     /translation="MLEQRHHRPTEPRAIVDRRLIADRLAALKAGPRLTQEATAILAE
                     ALSAGRTEVARRLLTEPGNGRAAAQTTAFLHDQLVRLAWDFVCNRLVHEPGSSNLALV
                     GLGGTGRGEMAPFSDLDLMFLTPGNIRAEQERAAEAMLHILWDLKIKVGHSVRSASQL
                     IDVAKKDMTVRTAFLEARWLWGNEKTFDSAASRFKKDVLSGTAAEFVSAKLAERDERH
                     MKMGDSRYVVEPNVKDGKGGLRDLHTLYWIGKYVHGVEKPADLVRAGLFTGAEFRRFD
                     RAERFLWAVRCHLHLLAGRAEERLNFEYQPRIAEIMNYADRPGKSAVERFMQFYFLNA
                     KAVGDLTGVFLAQLDEQLARKGFRFALPTIRRRPKRLGGFVLDRGRLSIPDDDFFKEE
                     PRRLLEIFALAVREGLEIHPNAMRAASRDAVRIDRQVREDPHANALFLEVLTSLNHPE
                     SALRWMNEAGVFGRFVPDFRRVVAQMQFDMYHHYTVDEHSIRAIGLLAAIERGDLKGD
                     HPISTAIFKQISSRRVLYVAVLLHDIAKGRRGDHSILGAEIAVRLCPRLGLDPAETET
                     VSWLVRNHLLLSSTAFKRDLADPKTIEDFVQQVQSPERLRLLLILTVVDIRAVGPGVW
                     TEWKRSLLRTLFEAAEERLRLGHKQHGRALIVEERQKELSEQLGWKASAAKAHARRLP
                     DSYWLAEPAAWQLANARQVAAAEAHIGEAKPNVVVEDDPGTGATRVSVFTPDREGLFY
                     RICAALASAGANIIDARIHTTRDGMALDNLVVLDGRGQPYADRRIRSRLVRAVEAAVG
                     AETLPPLPAVEPHRRTRAFEVAPSVAIADRASTRTTVVEVNAHDRPALLAALARAIHD
                     CGHTVHSAHIATYGERAVDVFYVTRAGGKKLNPDEIELLRSALLRAARAPATADAA"
     gene            complement(4795..7881)
                     /locus_tag="VE968_07645"
     CDS             complement(4795..7881)
                     /locus_tag="VE968_07645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010122943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU51732.1"
                     /translation="MIRKSTLLASAGLMAVAAPAFSQTVPPPTNESGKPSTAPPTETS
                     SAQTAAVQTQALQQQPVDTGNIIITATRRNQALSDVPMAVSAVTAQNLRNTGATDIRQ
                     LDQIAPSLLVSSTSSESGAAVARIRGVGTVGDNPGLEGSVGIFIDGVYRSRAGMALTE
                     LGPLDRIEVLRGPQGTLFGRNTSAGLISIITAKPRFTPEASAQVDIGNFNFRRLEGSI
                     TGPLSDTIAARLDGVYEKRDCFMTDVVSGRRLDNRNRWLLRGQILYQPNDNLSLRVIG
                     DYSRLNEECCGATYLPAHDVTAAGQGPSTIAAIERALGAIINDDTFSRKMSITPGRDD
                     DSRVRDWGLSAELDYDLGGAQLTSITAYRYNKYIRGQDADYNNLDLLYRPSDGGSFNR
                     FKTFSQELRLQGTTWNKRLDWLIGAYYANEKLAVDDNLAYGSDYARFANCLVAANFVA
                     GGSPASLLAPGASPTCFNSVVASGVRSSLIGAYNAALGAGQFTTASNIAGNIAALSAF
                     ARLPNAGLPASIPLPDFSGAPFTNSGFSNLTSPALTLTGAALDDSYRQTSNNWALFTH
                     NIFSITDQLKLTVGARYTHEKKTLDALLLDNNTICTLLSGTALQQLPCVIPSAPGGTF
                     AINDSRTESKVSGTVVLSYKPTDRLLTYASYSRGYKAGGFNLDRSALWRAQSVPTTVP
                     ATPGTAVLGNPPLSGSGAICVTASQTGCQGLVASGADLQFKPEINDAFEAGFKYHGHG
                     LDLNFALFHEVFRNFQLNTFNGLNFFVENINSCRDNLNGADSDNDPRTGACPSGHTGA
                     GVRTQGFELEAFTRPVSDVAWNSGVTLADTRYRENLIGANGQALNNALFQLPGRRISN
                     APLWTITSSIAWTPPIGSSGLRGLFYLDGRYMSSFNTGSDLDIEKMQSAFTIFNGRVG
                     VHGPDDAWAIELWGQNLLNKHYIQVAFDSPLQGSGTTRAVQAGFIPVSTQLYSAFLGE
                     PRTFGVTLRARTGFARRPAPAYVPPPAPPPPVEQAPPPPPPPPPPPPPPPAPERGS"
     gene            complement(8044..8565)
                     /gene="infC"
                     /locus_tag="VE968_07650"
     CDS             complement(8044..8565)
                     /gene="infC"
                     /locus_tag="VE968_07650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HZU51733.1"
                     /translation="MAPPPPMSGPRYNEFIQSPRVRVIDENGDNLGVMYTREAVEQAM
                     AAGLDLVEISPNADPPVAKFLDIGRYKYEAQKKAAEQRKKQKTQEIKEIKMRPNIDDH
                     DYDTKMKKVFEFLEEGDKVKVTMRFRGREMAHGELGMAVLRRVQEQTAEMAKVEAHPR
                     MEGRQMLMVLAPK"
     gene            complement(8709..10718)
                     /gene="thrS"
                     /locus_tag="VE968_07655"
     CDS             complement(8709..10718)
                     /gene="thrS"
                     /locus_tag="VE968_07655"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013039294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HZU51734.1"
                     /translation="MTKMFKIALPDGSVREMPEGSTPADVAAAIGPGLARAALAAKVD
                     GEVRDITRPFEGDAQLALITSRDEADALELVRHDYAHVLAEAVQNLFPGTQITFGPAT
                     EDGFYYDFAPTLEHGPFTEEELPAIEEEMRRIIAADKSLVREVWTREQVRDFFKNQGE
                     AFKAEWVMELPEGETITMYRTGEGDQAWIDLCRGPHLASTGKLDPNAFRLTRVSGAYW
                     RGDPKNPMLSRIYGTAWLNKKQLDEHLKRLEEAAKRDHRKIGQEMDLFHLQAEAHGSV
                     FWHPHGFTIYRELEAYMRRRIDEAGYQEIKTPQLMDARQWEKSGHWGKYRENMFVVPD
                     EIPSTDEDAPIISGKADLMALKPMNCPGHVLVFKQGITSYKELPIRFYENGSCHRNEP
                     HGALHGLMRVRQFTQDDAHIFCREDQIVDEARAFCELADRVYKDFGFTYSIKLALRPD
                     NRFGSDADWDMAESELRSAVVAAGMATSDFGWEELPGEGAFYAPKLEWHLKDAIGRTW
                     QVGTLQSDRVLPERLDATYVGEDGQKHRPIMFHRAIFGSYERFIGILIEHYAGKFPLW
                     LAPVQAVVATIVSDADSYAQEVAERLAIAGLRVETDLRNEKINYKVREHSLAKVPLLL
                     VVGKREAEEGTIAVRRLGSEDRQLVMKLDELVQMMRNEAVPPDLR"
     gene            10831..11913
                     /locus_tag="VE968_07660"
     CDS             10831..11913
                     /locus_tag="VE968_07660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014074478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjgN family protein"
                     /protein_id="HZU51735.1"
                     /translation="MDKHVNWTASGDGRAIHFTGNWREYLPIAITNALLVICTLGIYR
                     FWAAARQRRYLWSRTYIIDDTLEWTGTGKEMFLGFVLVMCVLAPFLLFFQFLFPALVA
                     HGKAEAAFGIFSLFYIAMIYLGGFARFRALRYRLSRTWWHGIRGGSDDPGWNYGGEYL
                     GRLALAAITMFIMFPWAATRLWNARWNAMSFGPLPFRANLDAEGLKARWSLIYLMPVA
                     AILALATLAAAGGFTRGSGGTPGFGAVAAAVFLMFYLAVPLLTLNWYAKYFRQAAAVT
                     RLGELEFSFDATTLEWLGLFLGNLALAIVTLGFGITYWGYRTWAFLTRHLHVYGTIDI
                     ADLTQSTTHAPREAEGFADAFDVGAI"
     gene            11917..>12368
                     /locus_tag="VE968_07665"
     CDS             11917..>12368
                     /locus_tag="VE968_07665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51736.1"
                     /translation="MHARLYDGVTGHPHAVTVEFETSTIRLSQASGWRDEVVAQKLKR
                     LESAPGVLRLGRADIHGWRLVLPSNAAHDVDTLLGKQERYGRWIDRVGLLPALLLGAL
                     VTGCVVTLGYSTPSWLAPHVPMSWERDVGSALVGDFGSIRCRDPAGQQA"
BASE COUNT         2350 a         3647 c         3793 g         2578 t
ORIGIN      
        1 ctgatcaccg gccccaacat gggcggaaaa tcaacattcc ttaggcaggc tgcgctgatc
       61 ctcgtgcttg ctcaggcggg cagctttgtt cccgcttcac gcgcgaccct tggcatcata
      121 gaccgcctgt tcagccgtgt cggggcttcg gataacctcg cgcgtggcag gtcgactttc
      181 atggtggaga tggtcgagac tgccgcgatt cttacgcagg cgacgccacg aagtcttgtg
      241 atcctcgacg agatcggccg tgggacatcg acttatgatg gtcttgcgat cgcctgggct
      301 gtcgtcgagg cgatgcatga cgaagtgaag tgccgaacgc tgtttgcaac gcactaccac
      361 gagctgacgc gtcttgcggg gcgtctggaa tcgctctccc tccatcacgt tcgcgcacga
      421 gagtggaagg gcgaactcgt tctcctccat gaggtcgctc cgggggcggc ggatagaagc
      481 tatggaattg cggtcgcaaa gctcgcgggt ctaccctcga aggtggttga acgagcgcga
      541 gctgttcttg aaaagctcga agctgggcgc aatgcgacgg gcggcattgc ggcgggcctg
      601 gacgagctcc ccctgtttgc tgccgttgcg gggaaccctc ccaccaaaga tcctctcgtg
      661 accgcgcttg aatcgatcga ccctgatcga ctgacccctc gggaggcgct tgataaattg
      721 tatgagctga agcgacttgc tcaatcgccg gagggaggat tgtagccgct cgccgcttca
      781 aacatcgccg acaatgcgat tctctcttcg tcgcttagct cgggccgcca gatttcgaac
      841 aggagcacgg cacgaacggc atcgctattg ttccatgctt catgttcgat actgtcgtcg
      901 aagatcattg ccttgccttc gacgacttgg cgcgtttcgc cgccgacccg gaggcggcat
      961 ccgtcgggca caaccagcgg gatatggcaa atcaagcgcg tgttgagcat tccggtgtga
     1021 ggggcgatgt gggtcccggg cttgagaatc gaaatcagcg ccatcggcga tcggccggca
     1081 attcggggta tcggaggcag ctcgagcagg cgcatgatca gggggcaacg actcgcattc
     1141 tcctcgacag gcttgccgtt cttccacaga tggaaggcgc tccagcttgc atcattaagc
     1201 aagctatgcc cttgcgaagc gcgctcggag tgttcctgga catagggttc aagcccctgt
     1261 tcgcccgcga gtacgcgttc aatttcggcg cgcatttccg gtacagccgc ttccagctta
     1321 gccacccatg gaaattgctc cggtgaatac caggcctgct gcggcaagcc tgggaagtag
     1381 aagcttgtcg gctgctgcag atagataggc tgcctgtccg atgcgattgc gagcgcttcc
     1441 gagacgcggg gtggtacttg cgctaatccc tcatcggcga gatgggcacg tagccactct
     1501 tcgaagcgct gctcgagacg tgcaagcata gcggtggcgc gctggagtct ttgcggcaga
     1561 tcaccgggca tttgttgaag ctgtgcgcag cgacgaatgg ctgcgcggta aaaggaaacg
     1621 gctgcccggt cgtccccctt ttccgcgaag atgtcggcct tcatcaacat gacgaagggg
     1681 ttttgcggat caacttcagc aacgcggttc agcgcgtgga gcgaccgttc ccagtctcgg
     1741 catcccgcac atccttgtgc atagaagagc caggcctgcg cgggggcgtc cggcgctccg
     1801 accacttgcg caaaggcatc gcgtgcggtc ggaaagtcgc ttcggcggag cgccgtaatc
     1861 ccgcgctgca tctccgcatg tacgtcgggg cgctgcaatt gcattggact agctatactc
     1921 tgccagttcg cgggtctagc cgccttggct ggcaccggcg ctgcaagtct ggtcattcgg
     1981 aatgaagttt gatgcttgaa caacgccatc atcgaccgac agagccgcgg gcaatcgtcg
     2041 atcgccgact gattgccgac cggcttgctg cgttgaaggc tgggcctcgg cttactcagg
     2101 aagccacggc aattcttgct gaagcgctca gcgctgggcg caccgaagtc gcgcggcgcc
     2161 tcctaactga accgggcaac ggtcgggccg cagcgcagac gaccgcgttc cttcatgacc
     2221 aactcgttcg tctcgcgtgg gatttcgtgt gcaaccgcct cgttcatgag cctgggtcgt
     2281 ccaatcttgc cctcgtcggc ttgggtggaa cgggacgggg tgaaatggca ccgttcagcg
     2341 acctcgacct tatgtttcta acgccgggaa acatcagagc cgagcaggag cgcgcggctg
     2401 aggcgatgct gcacatcctt tgggacctca aaataaaggt cgggcactcg gtgcgatccg
     2461 cgagccagct gatcgatgtt gccaaaaagg acatgacggt gcgtaccgcc ttcctcgaag
     2521 ctcgctggct gtggggtaac gagaaaacct tcgactcggc cgcaagccgt ttcaagaagg
     2581 acgtgctttc cggtactgct gccgagttcg tttctgccaa gctcgcggag cgtgacgagc
     2641 gccacatgaa aatgggggac agtcgctacg tcgtagagcc caacgtcaag gacgggaaag
     2701 gcgggcttag agacctccat accctctact ggatcggcaa gtacgttcac ggtgtcgaga
     2761 agcccgcgga tcttgtgagg gccgggttat tcaccggcgc agagttccgt cgcttcgatc
     2821 gtgccgagcg gttcctttgg gccgttcgtt gccacttgca cctcctcgct ggtcgggccg
     2881 aggagcggct gaacttcgag taccagccac gcatcgccga gatcatgaat tatgcggacc
     2941 gcccgggcaa atcggctgtc gagcgcttca tgcaattcta ttttctaaac gcgaaggcgg
     3001 tcggcgatct cacaggagtg ttcctcgcgc agcttgatga gcagcttgcg aggaaaggct
     3061 ttcgatttgc cctcccaaca attcggcgga gacccaagcg cctgggcggc tttgttctcg
     3121 accggggtcg tctttcgatc cccgacgatg atttcttcaa ggaggagccg cggcgacttc
     3181 tcgagatctt tgcgctcgcg gtccgcgagg gcctcgaaat ccatccgaac gcaatgcgcg
     3241 ctgcaagccg cgacgccgtg cggatcgacc gtcaggtgcg cgaggatccc cacgccaatg
     3301 cgcttttcct cgaggtgctt acctcgctta atcatccgga atcggcgctg cgctggatga
     3361 atgaagccgg ggtatttggc cgatttgttc cagattttcg ccgcgtcgtc gcacagatgc
     3421 agttcgacat gtatcaccac tatacggtcg atgaacattc gatccgcgcc ataggcttgc
     3481 tcgccgcgat cgaaaggggc gatctcaagg gcgatcatcc aatctcgacg gcgatcttca
     3541 agcagatttc gtcgcgaagg gtcctttatg ttgccgtgct tctacatgac attgccaagg
     3601 gccgacgcgg cgaccacagt attctcggtg ccgaaatcgc ggtgagacta tgtccgcggc
     3661 tcgggcttga ccccgccgag acggaaacgg tttcgtggct ggtgcgcaat cacttgctgc
     3721 tctcgtcgac tgctttcaag cgcgatcttg ccgacccaaa gacaatcgag gatttcgtgc
     3781 agcaggtgca aagccccgaa cggcttcgcc tccttctcat cctaaccgtc gtcgacattc
     3841 gcgcggtcgg accaggagta tggacggagt ggaagcgcag ccttctgcgg acgttgttcg
     3901 aggccgccga agagcgcctc cggcttggcc ataagcaaca tggccgagcg ctgattgtgg
     3961 aggagcgcca gaaggaactc tcggaacaac tcggctggaa agcgagcgca gcaaaggctc
     4021 acgcgcgccg actgcccgac agttattggc tggctgaacc ggccgcatgg cagttggcga
     4081 atgcccgcca agtagcagca gctgaggcgc acatcggcga agcaaagccg aatgtggtcg
     4141 tcgaggatga tcccggaact ggcgcgaccc gtgtgagtgt ctttacgccg gatcgcgaag
     4201 gcttgttcta ccggatatgc gccgcgctcg cctctgccgg cgcaaatatc atcgacgcac
     4261 gaatccacac cacgcgcgac ggcatggcgc tcgacaatct tgtcgttctc gacggacgcg
     4321 ggcagcccta tgccgatcgc cggatccgat cgcgccttgt aagggcggtg gaagcggcgg
     4381 tcggcgccga aacgcttccg ccgcttccag ccgtcgaacc gcaccggcgc accagggcgt
     4441 tcgaagtcgc accgtcggtt gcaatagcgg accgagcttc aacacgaacg accgtggtcg
     4501 aagtgaacgc gcacgatcgc ccagcacttc ttgccgcctt ggcccgcgca atccacgatt
     4561 gtggccacac ggtccattct gcgcacattg cgacctacgg cgagcgagca gtagacgtgt
     4621 tttatgtcac ccgcgcgggc gggaagaagc tcaatcctga tgagattgaa ctgcttcgtt
     4681 ccgcgcttct gcgcgcggcg cgcgcgcccg caactgccga tgccgcatga aatgccgaag
     4741 ccgcaaaatt ttgcctgggg atgaggacaa acccgcgctg atgatccgac ctgctcagga
     4801 gcctcgctct ggcgccggcg gcggcggcgg tggtggcggt ggtgggggag ggggtggcgg
     4861 cgcctgctcg accggcggcg gaggggcggg cggcgggacg taggccggag cgggccggcg
     4921 cgcaaatcca gtccgtgcgc gaagagtcac tccaaatgtt cgcggctcgc ccaggaatgc
     4981 ggaatagagc tgcgttgata ctggtatgaa gcccgcctgc accgcgcgag tggttccgct
     5041 gccctggagc ggggagtcga aggccacttg gatgtaatgc ttattgagga ggttctggcc
     5101 ccaaagctca atcgcccatg catcgtcagg gccatgcacg ccgacacgcc cgttgaagat
     5161 cgtgaacgca ctctgcattt tctcaatgtc gaggtctgag cccgtattga atgaactcat
     5221 gtatcgtcca tcgagataga acaggccgcg caagccacta cttccgatcg gcggggtcca
     5281 ggcgatcgat gaggttatcg tccagagcgg cgcattcgag atcctgcggc caggcaactg
     5341 gaacaatgcg ttgtttagtg cttgcccgtt cgctccgatc aaattctcgc ggtacctcgt
     5401 gtcggcgagc gtaacgcctg agttccacgc gacatcagag accgggcgag tgaatgcttc
     5461 gagttcaaag ccctgcgtac gaacgccggc accggtgtga cccgatgggc aggcaccggt
     5521 ccgtggatcg ttatcactgt cagcaccgtt gagattgtca cgacagctgt tgatgttctc
     5581 tacgaagaaa ttgaggccgt tgaacgtgtt cagctggaag ttgcggaata cctcgtgaaa
     5641 gagcgcgaag ttcaggtcta ggccgtggcc gtggtacttg aagcccgctt cgaatgcgtc
     5701 gttgatttcg ggcttgaact gaaggtccgc acccgaagcg accagccctt ggcatccggt
     5761 ctgcgacgcg gtgacacaaa tagcaccgct gcccgagagc gggggattgc cgaggacggc
     5821 ggtcccgggc gttgctggga cggtggtcgg cacgctctgc gcgcgccaga gagcggagcg
     5881 atccagattg aagccgccag ctttgtagcc ccgcgagtag ctggcgtagg tcagcaagcg
     5941 atccgttggt ttgtagctga ggacgaccgt cccggagact ttcgactcgg tccgagagtc
     6001 attgatcgcg aacgtcccgc caggagcgct cgggattacg cagggaagct gctggagcgc
     6061 ggtaccggag agaagggtgc agatcgtgtt attatcgagg agcagggcgt cgagagtctt
     6121 cttctcgtgc gtgtagcggg cgccgaccgt gagcttcagc tggtcagtga tcgagaagat
     6181 attgtgcgtg aacagcgccc agttgttgct ggtctgtcga taggaatcgt ccagcgcagc
     6241 gcccgtcagc gtgagagccg ggctcgtaag gttcgaaaat ccgctattcg tgaacggcgc
     6301 tccgctaaag tccggcaacg gaatcgaggc cggaagtccc gcgttcggaa gtcgcgcaaa
     6361 ggctgacagc gccgcgatgt tgccggcgat gttcgatgcg gtggtgaact ggcccgcgcc
     6421 taaagctgcg ttgtaagcac cgatgagcga cgagcgaacc ccgcttgcga ccacgctgtt
     6481 gaagcacgtc ggcgatgcgc cgggcgcaag caggcttgcg ggcgatccac cggctacgaa
     6541 gttcgcggcg acgaggcagt tggcaaagcg ggcatagtcg ctgccgtacg caagattatc
     6601 gtcgaccgcg agcttctcgt tcgcgtaata agccccgatc agccagtcga ggcgcttgtt
     6661 ccaggttgtg ccctgcaggc gcagttcctg gctgaacgtc ttgaatcgat tgaacgagcc
     6721 gccgtcgctc gggcgataaa gcaagtcgag attgttgtaa tcggcatcct gcccgcgaat
     6781 gtacttgttg tagcgatacg cagtgattga cgtcagctgg gcaccgccga gatcatagtc
     6841 gagctcggcc gataaccccc aatcgcgaac tcgcgaatca tcgtcgcggc cgggcgtgat
     6901 ggacattttg cgcgagaagg tgtcatcgtt gatgatggcg ccaagcgcgc gttcgattgc
     6961 cgcaattgtc gagggccctt ggcctgcggc cgtcacatcg tgagctggaa ggtaggtagc
     7021 gccgcaacat tcctcgttca gccgtgaata gtcgccaatg acgcgcagtg aaagattgtc
     7081 attgggctgg taaaggatct gtccccggag aagccagcga ttccgattgt cgagacgcct
     7141 tcctgagacc acatcggtca tgaaacagtc gcgtttttcg tacacaccgt cgaggcgggc
     7201 cgcgatcgtg tcactgagcg gaccggtgat gctgccttcg agtcgtcgga aattgaagtt
     7261 tccgatgtcg acctgagcgc tcgcttccgg tgtaaatcgc ggcttagcag tgattatgga
     7321 gataagcccc gccgaggtgt tgcggccgaa aagagtgcct tgaggaccac gaagaacctc
     7381 gattcggtcg agtggaccga gctccgtcaa cgccatgccg gcgcgagagc gatacacgcc
     7441 gtcgatgaaa atgccgacag agccttcgag cccgggattg tccccgaccg taccaacacc
     7501 gcgaatacgc gcgacggccg caccactttc ggacgatgtc gaggaaacca gcagtgaggg
     7561 cgcaatctgg tcaagctggc gaatgtcggt tgcgccggtg ttgcgcaggt tctgcgcagt
     7621 aacggcgctc acggccatcg ggacgtccga cagcgcctga ttgcgtcgcg ttgcggtgat
     7681 aatgatattg ccagtgtcca ctggttgctg ctgcaaggcc tgcgtttgaa ccgcggcagt
     7741 ctgcgcgctc gatgtttcag taggaggagc agtcgacggt tttccacttt cgttggtggg
     7801 tggtggaacc gtctgcgaga atgctggtgc tgcgaccgcc atgagaccag ccgacgcaag
     7861 aagggtggac ttgcggatca tttcgttctc tccccctcgg gcgaaatatc gcccgctcag
     7921 ggagtgacgc taaccccgaa acgacttcaa agggaagcgc tgcaacagcc gtgcatcaac
     7981 aattggtgca cggctgctgc aatttggcaa cattagtgta agtaagaacc gtcgggcgcc
     8041 gtcctatttg ggcgcgagca ccatcagcat ttggcggcct tccatgcgtg gatgcgcctc
     8101 gactttggcc atctccgcag tctgctcctg aacgcgccgc aggacggcca taccaagctc
     8161 gccatgggcc atttcgcgac cccggaagcg catcgtgacc ttgaccttgt ccccttcttc
     8221 aaggaactcg aacacctttt tcatcttggt gtcataatca tggtcgtcga tattaggacg
     8281 catcttgatc tccttgatct cctgcgtctt ctgctttttg cgctgctcgg ccgccttctt
     8341 ttgagcttcg tacttgtacc gcccgatatc gagaaacttt gcgacgggag gatcagcatt
     8401 gggcgaaatc tcgaccaggt cgagtcccgc tgccatcgcc tgttccaccg cttcgcgcgt
     8461 atacatcacg cccaggttgt cgccgttctc gtcaatcact cgcactcggg gcgattggat
     8521 gaactcgttg tagcggggac cgctcatcgg cggcgggggc gccatcggac ggcgcggata
     8581 gggcggtggt atagcaggaa ctccgttgca gttgttgaac aggcgtgaat taagcattcc
     8641 ggcgcgacct gaaaaggcca cccgaacgaa tgtgagtcat tttcgccgcg cagtgttgcg
     8701 aagagtcgtc aacgaaggtc aggtggaacg gcctcgttgc gcatcatttg caccaactca
     8761 tccagtttca tcaccagttg gcgatcctct gaaccaagcc ggcgaacagc gatcgttccc
     8821 tcctcggctt cgcgtttgcc gacgacgagg agaagcggga ccttggcaag actgtgttcg
     8881 cgcactttgt aattgatctt ctcattgcgc aggtcagtct ccacgcggag tccagcaatt
     8941 gcgagcctct cggcaacttc ttgcgcgtaa gaatccgcgt ccgatacaat cgtcgcaacc
     9001 accgcctgga ctggagcgag ccaaagcgga aacttgcccg cataatgttc gatgagaata
     9061 ccgatgaagc gctcgtacga accgaagatc gcacggtgga acatgatggg gcgatgcttt
     9121 tgcccatcct cgccgacata agtcgcgtcg aggcgctccg gcagcacccg gtctgattga
     9181 agcgtgccga cttgccaagt gcgtccaata gcgtctttga gatgccattc gagcttgggc
     9241 gcataaaagg caccctcgcc gggcagttcc tcccagccga agtcactcgt cgccataccg
     9301 gcagcaacca cagccgaacg aagctcggac tcagccatgt cccaatcggc gtcacttccg
     9361 aaccgattgt ccggtcgaag cgcgagctta atcgagtaag tgaagccaaa atccttgtaa
     9421 actcggtcgg caagctcgca gaacgcacgt gcctcgtcga caatctggtc ttcgcgacag
     9481 aatatatgcg cgtcatcctg cgtgaactga cgcacgcgca tcagtccgtg aagggcgccg
     9541 tgcggctcgt ttcgatggca gctgccattc tcgtagaacc ggatcggcaa ctccttgtag
     9601 ctcgtaattc cctgtttgaa gacgagcacg tgcccagggc agttcatcgg cttcagggcc
     9661 attaggtcgg ccttgcccga aatgatcggt gcatcctcgt cggtgctcgg aatttcgtcg
     9721 ggcacgacga acatgttctc tcggtatttt ccccagtggc cgctcttttc ccactggcgc
     9781 gcatccatga gctgcggtgt ctttatttcc tggtatcccg cctcatcaat gcgccggcgc
     9841 atatatgctt cgagctcgcg gtagatcgtg aacccgtgcg gatgccaaaa tacacttccg
     9901 tgcgcttccg cttggaggtg gaataagtcc atctcctggc cgatcttgcg atggtcgcgc
     9961 ttggccgcct cttcaagccg cttcaaatgc tcgtcgagct gcttcttgtt tagccaggca
    10021 gtaccgtaga tccggctaag cattggattc ttggggtccc cgcgccagta agcgcccgag
    10081 acacgggtga gcctgaaggc attcgggtca agtttgccgg tcgaagcaag atgcggacca
    10141 cggcacagat cgatccacgc ctgatcgccc tcgcccgttc ggtacatggt aatggtttcg
    10201 ccttcgggca gctccatcac ccattcggcc ttgaacgcct cgccctggtt cttgaagaag
    10261 tcgcgcactt gttcgcgcgt ccatacttcc cgaactaagg acttgtcggc ggcgatgatc
    10321 ctgcgcatct cttcttcgat cgcgggcagt tcctcttcgg taaaggggcc gtgctccagc
    10381 gttggcgcaa aatcgtagta gaaaccgtcc tcggttgcgg ggccgaacgt gatctgcgtt
    10441 cccgggaaaa gattctggac ggcttcagcg agcacgtgag catagtcatg ccgcacgagt
    10501 tcaagagcat ctgcctcgtc acgggaagtg atgagcgcca gttgcgcgtc accctcgaag
    10561 ggtcgcgtga tgtcgcgtac ttcgccatca accttggctg cgagcgccgc tcgcgcgagc
    10621 cccggcccga ttgccgcagc gacatcggcg ggcgtcgagc cttccggcat ttcccggacg
    10681 gatccatcgg gaagcgcaat cttgaacatt ttcgtcatgg ccaccggcat gtagcgatgc
    10741 gagacaggcg tctcaaccgc gacgtcgcgg catcttgcaa acccagccaa tcccatgcag
    10801 cttccgcttc gctcgggggg agacggggcg atggataagc acgtgaattg gacggcgagc
    10861 ggggatggcc gcgcaattca cttcaccggc aactggcgcg aatatctgcc aatcgcaatc
    10921 acgaacgcgc tgctcgtgat ctgcacgcta ggaatatatc ggttctgggc cgcagcgcgg
    10981 cagcggcgat acctctggtc gcgcacgtac atcatcgacg atacactgga atggacgggt
    11041 acgggcaagg agatgttcct cggctttgtc ctggtgatgt gcgtcctcgc ccctttcttg
    11101 ctcttcttcc agtttctttt cccagcgctc gtcgcgcacg gtaaagcgga agccgcgttt
    11161 gggatctttt ccctcttcta tatcgcgatg atttatcttg gcggcttcgc ccgctttcga
    11221 gcgctccgct atcgtttgtc gcgaacatgg tggcacggaa ttcgcggcgg aagtgacgat
    11281 ccaggctgga actatggagg cgaatatctc gggcgtcttg ctcttgcagc gatcacaatg
    11341 ttcatcatgt tcccatgggc tgcgacgagg ctttggaacg ctcgctggaa cgcgatgagc
    11401 ttcggcccat tgccgtttcg cgccaatctc gatgccgaag gtctcaaggc aagatggtcg
    11461 ctgatctacc tcatgcccgt ggccgccatt ctcgcgcttg caaccctagc ggcggcaggc
    11521 ggctttaccc gcggatccgg cggaacgccg ggcttcggcg cggttgctgc tgccgtgttc
    11581 ttgatgtttt acctcgccgt gcctctgctg acgctcaact ggtacgccaa atactttcga
    11641 caggcagcag ccgtcactcg gctcggggag cttgagttca gcttcgatgc cacgactctg
    11701 gagtggctcg gcctcttcct cggcaacttg gcactagcca tcgtgacact gggtttcggg
    11761 atcacctatt ggggataccg cacctgggct tttctcacgc gacacctcca tgtttatggc
    11821 acaatcgaca ttgccgatct cacgcaatca acgacgcacg cacctcgcga ggcagaggga
    11881 tttgccgacg cgttcgacgt gggcgcgatc tgacgagtgc acgcgcgact ttacgacgga
    11941 gtgactggcc atccgcacgc ggtgacggtc gaattcgaaa ccagcacaat ccggctttct
    12001 caggcaagcg gctggcgtga tgaagtcgtt gcgcaaaagc tgaagcgcct cgagagcgcc
    12061 cctggagttc ttcggctcgg tcgcgccgac atccacggct ggcggctcgt gcttccctcg
    12121 aatgcggcgc atgacgtcga caccctcctc ggaaaacagg agcggtacgg ccgatggatt
    12181 gaccgcgtcg ggctcttgcc tgccttgctt ttgggcgcac tcgtcaccgg ttgcgtcgtc
    12241 acattaggtt actcgacgcc gagctggctc gcgccacatg tgcccatgag ctgggaacgt
    12301 gatgtgggca gtgcgctcgt cggcgacttc ggcagcattc gctgtcgcga tcctgccggc
    12361 cagcaagc
//
LOCUS       DASRBJ010000280         7828 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_238268,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000280 DASRBJ010000000
VERSION     DASRBJ010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7828
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238268"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1314
                     /locus_tag="VE968_07670"
     CDS             <1..1314
                     /locus_tag="VE968_07670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HZU51737.1"
                     /translation="VPAGLLREVGSLLVEVHGQHDDRGLMNPKGHRALLDGFGKVDHA
                     AVERAWADVTRIEHDLLEARTAAASAERDREWLEHACNEIEQLAPQTGEETRLAEDRA
                     GMQAAVKAGESLTGLDELLGGSEGAISQLRQAARRIERAAPDHPLLAEALAALDRALI
                     EASDAEDRIARAAEALSPDPANLERIEARLFDIRALARKHRVEPDQLAALGQEMREQL
                     AAIEDRVGRIEELDRSLVMARATYAAAAEHLSRARHAAAARLDQAVAAELAPLKLDAA
                     RFRTAISPIEASASGIDRVEFEVSTNPGSPFGPLTRIASGGELSRFILALKVALVEAG
                     SAATMIFDEVDRGVGGAVASAIGERLARLATQSQVLVVTHSPQVAARASSHFRIEKNH
                     GEAGTRTIVRKLSGDERREEIARMLSGASITEEARAQASRLMDAA"
     gene            1311..1829
                     /locus_tag="VE968_07675"
     CDS             1311..1829
                     /locus_tag="VE968_07675"
                     /inference="COORDINATES: protein motif:HMM:NF019614.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HZU51738.1"
                     /translation="MTTYVALLRAVNLGGGSSVRMADVKSIADKLGYKQARTYLASGN
                     LLFTSTMPREHVRETLEKSLSEHLGRSIKVVVRTDDEIAAVVRSNPFTDAAPAAVQTF
                     FLDDEPPENLLDTVRNKDDERIAVGTREIFVAYGEKGIGRSRLRIAAADAGTARNMKT
                     VSKLAELAREMS"
     gene            1826..2539
                     /locus_tag="VE968_07680"
     CDS             1826..2539
                     /locus_tag="VE968_07680"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HZU51739.1"
                     /translation="MSKDRTIPHNFEGEQLESVFVGRRDGQARPTVILVPTVMGVTDL
                     EVGFGRQLVELGYNAFVADLFGKEFRGAPRDTMFGEMNRLKSDRAALRRRMIHVLELA
                     QSLDEVNSDQIVVAGYCFGGMCALDLARAGADIAAAVSFHGLFDPPGLAPERIKAKVL
                     AFHGWDDPMVPPEKVVALGEELTGAGADWQIDAYGHVGHGFTNPRASELQIDGVRYNA
                     LAAERSWTSFINLLEELFG"
     gene            2536..4578
                     /gene="ligA"
                     /locus_tag="VE968_07685"
     CDS             2536..4578
                     /gene="ligA"
                     /locus_tag="VE968_07685"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017672296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HZU51740.1"
                     /translation="MNLSSDINEAEAANRLMRLAKEIARHDKLYHDQDAPEISDAEYD
                     SLVRENRALEARFPHLARADSPSRRLGAEPTTALSKVTHARPMLSLDNAFSTEEVGEF
                     VARVRRFLALPSDALLSFTAEPKIDGLSCSLRYEAGVLVLAATRGDGTVGEDVTANAQ
                     TIDDIPARIEGAPLILEVRGEVYMSKTDFEALNERQASEGGKIFANPRNAAAGSLRQK
                     DAAVTAARPLRFLAHGWGEVSDLPGGTQYEVMKSIERFGLPVTDFLVRCATLDEMIEH
                     YRRIERARADLPFDIDGVVYKVDRLDFQERLGFVARAPRWGLAHKFPAERAETTLEAI
                     DIQVGRTGKLTPVGRLKPVGVGGVIVANVTLHNRDEIARLGLRIGDRVRIQRAGDVIP
                     QVVENLTRAEPRPPFQFPDHCPECGSDAVSEEGEVDVRCTGGLICPAQRFERLRHFVS
                     RAALDIEGLGEKSIAEFIDLGWLHSPADIYRLSHHRSELLGRGGWKEKSVENLLAAIK
                     SRRSPESPRLLFGLGIRHVGIVTARDLLKVFGTVEEIRRVALSPTGEDELSSVQGVGP
                     KVAEALVDFFNEPHNVQALDDLLSEVTPLPFINQAKPTEWKGKTIVFTGSLETMSREE
                     AKAQADRLGARAAGSVSAKTDLVVAGPGAGSKLKKAEELGIRVISEEEWAKIIAAA"
     gene            complement(4662..5549)
                     /locus_tag="VE968_07690"
     CDS             complement(4662..5549)
                     /locus_tag="VE968_07690"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HZU51741.1"
                     /translation="MSWRATVPCSRAQGETIAHAEDLFPVSEYPPVLVVDEPDPSSPN
                     SWLIHAYFDERPTSVEIATLTSLGNGPPQIEQLGEEDWVRMSQSGLQPIRAGRFFVHT
                     PTSPPDPAKISFEIDAGLAFGTGQHATTAGCLEVLDKLERQGANFTTIADVGTGTGLL
                     AFASLALWPGAKCIASDIDPIAIDVARENAAINGVKQGHGRGELLLAQADGMSSALLS
                     ARAPFDLIIANILAAPLIDLAGDFAKALSPGGMVVLAGLLDTQATKVRTVYENHGLEL
                     ADETDGEWPVLVLRAPRSR"
     gene            complement(5546..6460)
                     /gene="bla"
                     /locus_tag="VE968_07695"
     CDS             complement(5546..6460)
                     /gene="bla"
                     /locus_tag="VE968_07695"
                     /EC_number="3.5.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF033105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="subclass B3 metallo-beta-lactamase"
                     /protein_id="HZU51742.1"
                     /translation="MFVKAALGPAALAAAQLVIPLGHPRVIEPPKAPIETAGPLWVAR
                     CNGSKDYAKAAPPVRIHGNTFLVGTCGISSILIVGDQGDILIDAGPQEAAPLIAANVE
                     ALGFHVQDIRYILNSHEHPDHIGGVAELQRMSRATLVTSARAARVFETGRANDDDPQA
                     GTLKAVPTATVGRIIGDGEQLRLGNLMLTALATPGHTPGALSWRWVSCDGGVCRTIVY
                     ADSLSPVSAPNYRYSDHPAYLAAYRASIAKISSSPCEILLTPHPEASDLPGRLALGEP
                     LFDPNACKNYAATLSRNLDDRLAKEARK"
     gene            complement(6450..7154)
                     /locus_tag="VE968_07700"
     CDS             complement(6450..7154)
                     /locus_tag="VE968_07700"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZU51743.1"
                     /translation="MNILITGASRGIGSAAYGLLKKHGQHVVGHSTLGSDCLIAGDLS
                     KPAAPRNVWDTAMDELGGRIDVLVNNAGIYEAVSDNAPDEEWHAAWARTMTVNLQAAA
                     DLSRLAVSHFLDRGGGGRIVNIASRAAYRGDSPQHWHYAASKGAMVAMTKTIARGYAS
                     DGILAFGVAPGFTVSEMTAEYLEGRGGAQIIADIPLGRVASTDEVAEVIRWLATEAPP
                     SATGSIIDVNGASYVR"
     gene            complement(7202..>7828)
                     /locus_tag="VE968_07705"
     CDS             complement(7202..>7828)
                     /locus_tag="VE968_07705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HZU51744.1"
                     /translation="RAIEDARSEVEVAAGVATRAGDQARDAVKVSQALSAHVEAIESI
                     LGLIRDIAGQTNLLALNATIEAARAGDAGRGFAVVAQEVKSLASQTARATDDITAKIT
                     AIQQATRQTVESNASIQGTVEEVQSSADRIREAMELQAQTVTMITAAVDETALAADSM
                     SSTIAAIRSDTESVAKDIDQVEQGFVRFSEQLANFRASAKAFVTGRAA"
BASE COUNT         1510 a         2310 c         2473 g         1535 t
ORIGIN      
        1 gtccctgccg gcctccttcg cgaagttggc agtcttctcg ttgaggttca tggacagcat
       61 gatgatcgtg gtctcatgaa tcccaagggg caccgtgccc ttctcgacgg cttcgggaaa
      121 gtggatcacg ccgccgttga acgggcctgg gcggacgtta ccaggatcga gcatgatttg
      181 ctggaggccc ggactgcagc ggccagtgcc gaacgggacc gtgaatggct cgagcatgcc
      241 tgcaatgaaa tagagcagct tgcgccgcaa acgggagagg agacgcgcct cgccgaggat
      301 cgagcgggaa tgcaggcagc cgtcaaggcc ggcgaaagtt tgacgggtct tgatgagctc
      361 ctcggcggat cggagggagc aatttcgcaa cttcgccaag cggcacgtcg gattgagcgt
      421 gccgcccccg atcatccctt gcttgccgag gcactcgccg cactggaccg agcactcatt
      481 gaagcttccg acgcggagga ccgtatcgcc cgagccgccg aagctctgtc ccccgatcca
      541 gctaatctcg agagaatcga agcacggcta ttcgacattc gtgcgcttgc gcgcaagcac
      601 cgcgtggagc cggaccagct tgctgcgctt ggccaggaga tgcgcgagca attggcggcg
      661 atcgaagatc gggtggggcg cattgaagaa ctcgatcgca gcctcgtgat ggcacgtgcg
      721 acatatgccg ccgctgccga gcatttatca cgcgcccgac acgcggccgc ggcccggctc
      781 gaccaggcgg ttgctgcaga acttgcaccg ctgaaactcg atgcggcacg tttccgaacg
      841 gcgatttcgc cgattgaggc gagtgcgtcg ggcatcgacc gagtcgagtt tgaagtttcc
      901 acgaatccag gctcgccgtt cgggcctctc acgcgtattg cctcgggcgg ggaactgtcc
      961 cgtttcatct tggcattgaa ggtcgctctc gtcgaggcgg gtagcgcggc gacgatgatc
     1021 ttcgacgagg tcgatcgcgg cgtcggcggc gctgttgcaa gcgctatcgg tgagcgcctc
     1081 gcgcgcctgg cgacgcaaag ccaggtcctg gtggtcactc actcgccgca agtcgctgct
     1141 cgtgcgtcga gccacttccg catcgagaaa aatcatggcg aagcgggaac ccgaacgatt
     1201 gtccgaaagc tctcgggcga cgaacgccgc gaggaaattg caaggatgct ctccggtgcc
     1261 tcaatcaccg aagaagcgcg agcgcaggcc tcaaggctta tggatgcggc gtgacgacgt
     1321 acgtcgcgtt gctccgcgct gttaatttag gcggcggcag cagtgttcga atggcggacg
     1381 tcaagtcaat tgccgacaaa cttggctaca aacaggcgcg tacgtacctt gcgagtggca
     1441 acctcctatt cacgagcacg atgccccggg agcatgtacg agagactctc gagaagagct
     1501 taagcgaaca tcttggaagg tcgatcaagg ttgtcgtgcg aacggacgat gagatcgcgg
     1561 ccgtcgttcg ttccaatccc ttcacggacg ccgcgcccgc cgcggtgcag acgttctttc
     1621 tcgacgacga accgcccgaa aaccttctcg acacggtgcg caacaaggac gacgagcgca
     1681 tcgctgtcgg cacaagggag atctttgtcg cgtatggcga aaagggtatc gggcgctcgc
     1741 gcttgcgcat cgcggcggca gacgcaggaa ctgcccgcaa catgaaaacg gtgtccaagc
     1801 tcgctgagct tgcaagggag atgtcatgag taaggaccga accatcccac ataatttcga
     1861 gggcgaacag ctcgagagcg tctttgttgg gcggcgcgat ggacaagcgc ggccaacggt
     1921 cattctggta ccgaccgtga tgggagttac cgacctcgag gtcggctttg ggcgccagct
     1981 tgttgagctc ggatataacg cattcgttgc ggacctcttc ggcaaggaat ttcgtggtgc
     2041 gccgcgcgac accatgttcg gcgagatgaa ccggctcaag agtgaccgcg cggcgctacg
     2101 acggcgaatg atccacgtac tcgagcttgc ccaaagcctc gacgaagtga actcagacca
     2161 gatcgtcgtt gccggctatt gctttggcgg aatgtgtgcc ctggaccttg cgagggctgg
     2221 agctgatatt gctgcggcag taagttttca tggcctcttc gacccgccag ggcttgcgcc
     2281 ggaaaggatc aaggcgaagg tgctcgcctt ccacggctgg gatgacccga tggtgccacc
     2341 cgagaaggtg gttgctcttg gcgaggaact caccggggcg ggcgccgact ggcagatcga
     2401 cgcctatggt catgtcgggc atggatttac gaacccacgc gcgagcgagc ttcagatcga
     2461 tggcgtgcgc tataatgcgc ttgctgccga gcgctcttgg acaagcttca taaaccttct
     2521 cgaggagctg ttcggctgaa tctttccagc gacattaacg aagcagaggc tgccaatcgc
     2581 ctgatgcgac tggcaaagga gatcgcgcgt cacgacaagc tttatcatga ccaggacgcg
     2641 cctgagatat ccgacgcgga atatgattcg ctcgtccgtg aaaaccgcgc gctcgaagcg
     2701 cggtttccgc atctcgctcg cgccgactct ccctcgagac gcttgggagc cgaaccaacc
     2761 accgcgcttt cgaaggtcac tcacgcgcgg cccatgctca gcctcgacaa tgcgttctcg
     2821 acagaggagg tgggcgagtt tgtggcccgt gtccggcgct ttcttgccct tccatccgac
     2881 gcattgctca gcttcacggc agagcccaag atcgacggtc tcagctgctc gctccgttat
     2941 gaggctggcg tactcgttct tgcagcaacg cgcggggacg gaacggtcgg cgaggacgtc
     3001 accgccaatg cgcagacaat tgacgacatt ccagcgcgca ttgaaggagc ccctctcatc
     3061 ctcgaagtgc gcggtgaggt ttacatgtcg aagaccgact tcgaggcgct gaacgaacgt
     3121 caggcgtccg aaggcgggaa gatcttcgct aacccgcgga acgctgcagc ggggtcattg
     3181 cgacagaagg atgcggcagt caccgcggcg aggccgctgc gttttcttgc gcacggctgg
     3241 ggcgaagtga gtgatttgcc tggcggcaca cagtacgaag tcatgaagag tatcgagcgg
     3301 tttggccttc ctgtgacgga ctttctcgtt cgctgcgcaa ctcttgacga aatgattgaa
     3361 cactaccgcc gcatcgagcg ggcgcgggct gatctgccgt tcgatatcga cggtgttgtc
     3421 tacaaagtcg atcggctcga tttccaagag cggctcggct tcgttgcgcg tgcgccgcgg
     3481 tggggcttgg cgcacaagtt cccagcggaa cgcgccgaga cgacgctcga agcgatcgac
     3541 atccaggtcg gccgaaccgg caaattgacg ccagtcggac gattaaagcc agtcggagtc
     3601 ggcggtgtca ttgttgcgaa cgtcacgctt cacaaccgtg atgaaattgc acgcttggga
     3661 ctccggatcg gtgatcgggt tcgcatccaa cgggcaggcg acgtcatccc gcaagtagtg
     3721 gaaaatctga ccagggccga accgcggcca ccgttccagt tccccgacca ttgtcccgag
     3781 tgcggcagtg atgccgtttc cgaggaaggt gaggtcgacg tccgctgcac tggtggactg
     3841 atctgccctg cgcagcgatt tgaaaggctc cggcacttcg tctcgcgtgc tgcgctcgac
     3901 atcgaagggc tcggcgagaa gtcgatcgct gagttcatcg atcttggctg gcttcactcg
     3961 ccggccgaca tctatcggct ctcgcatcat cgcagcgagc ttctcggccg cggcggctgg
     4021 aaggagaagt cggtcgaaaa tctacttgct gcaatcaaat cgaggcgttc gccagaaagt
     4081 ccccgactcc tgttcggact tggtatccga cacgttggca ttgttactgc aagagacctg
     4141 ctcaaggtct tcggaacggt cgaggaaatc cggcgcgttg cgctttcgcc gaccggagag
     4201 gatgagttgt catcggttca gggcgttggc ccgaaagtcg ctgaagcgct cgtcgacttc
     4261 tttaacgagc cccacaacgt gcaagcgctc gacgaccttc taagcgaggt caccccactc
     4321 ccgttcatca accaggccaa accgaccgag tggaagggaa agacgatcgt tttcaccggc
     4381 agccttgaga cgatgagtcg cgaagaagcc aaggcccagg cggatcgact tggggcacgt
     4441 gctgcagggt cggttagtgc aaagaccgac ctggtagttg ctgggccagg tgcggggtcc
     4501 aagctcaaga aggccgaaga gctagggatt cgcgtcatca gcgaagagga atgggcaaag
     4561 atcatcgctg cggcatgatt gggtgagcgc aaagccgcta agcaacgcga cgacggtcag
     4621 cattggagcg cgcgcgaact cgggtgctcg aacaggaacg ttcatcggct cctaggagcg
     4681 cgaagcacca ataccggcca ctcgccatcc gtttcgtcgg cgagttcgag gccgtgattc
     4741 tcatagaccg ttcgaacttt cgttgcctgc gtgtcgagaa ggccagcgag gacaaccatt
     4801 cctcctgggc tgagcgcctt ggcgaaatcg ccggcaagat cgatcagtgg cgcagcgaga
     4861 atattggcaa tgatgagatc gaatggcgcg cgcgccgaca acagggccga gctcatgcca
     4921 tccgcctgcg caagcagcag ctctcctcgt ccgtgacctt gcttaacgcc gttgatcgca
     4981 gcattctctc gcgcaacatc aatcgctatg gggtcgatat cgctcgctat gcacttggct
     5041 cccggccaca gcgcaagcga cgcaaaggcg agtaatccgg tgccggtccc aacatccgcg
     5101 atggtcgtga agttcgcccc ctgccgctct agtttgtcga gcacttcgag gcagccggcg
     5161 gtcgttgcat gttgtccggt accgaaggcg agaccggcat cgatttcgaa gctaatcttc
     5221 gccgggtcag gtggagaagt cggcgtgtgg acgaaaaatc ggccggcccg gatcggctgt
     5281 agtcccgact ggctcatccg tacccaatct tcttcgccga gctgttcgat ctgcggcggc
     5341 ccgttgccga gcgaagtcaa agtcgcaatt tcgacgcttg ttggtcgctc atcgaaatag
     5401 gcgtgaatca accaggaatt cggactgctg ggatcgggct cgtccacaac gaggaccggc
     5461 gggtattcac tgactgggaa tagatcctcg gcgtgagcta tcgtctcacc ttgcgcgcgg
     5521 ctgcacggga cagtcgcgcg ccagctcact tccgggcttc cttcgcgagg cggtcgtcga
     5581 gatttcgtga gagcgtggca gcataattct tgcaagcgtt cggatcgaac agcggctcac
     5641 cgagcgcgag ccggccgggt aagtcactcg cctcggggtg gggagtgagg aggatctcgc
     5701 atggactgga ggaaatcttg gcaatcgatg cgcgataggc ggcgagataa gccggatgat
     5761 cactgtaacg gtaattcggg gcacttacgg gcgagaggct gtctgcataa acgattgtgc
     5821 ggcaaacgcc gccgtcgcag cttacccaac gccagctgag cgcgccgggc gtgtggccgg
     5881 gcgttgcaag cgcggtcaac atgaggttcc caagtcgcag ctgctcgcca tcgccgataa
     5941 ttcgcccgac tgtcgcggtt gggacggcct tgagagtacc ggcctgcgga tcgtcatcat
     6001 tcgccctgcc ggtctcgaaa acccgggctg cgcgtgccga agtgacgagc gtcgcccggc
     6061 tcattcgctg aagttcggcg acaccgccga tatgatctgg atgttcgtgg ctgttgagaa
     6121 tgtaccggat gtcctggaca tgaaatccaa gcgcttcgac attcgcggcg atcaacggtg
     6181 ctgcctcttg cgggcctgcg tcaatcagta tgtccccttg gtcaccaacg atgagtatcg
     6241 acgagatccc gcaggtacca acaagaaagg tgttgccgtg gatccgaacc ggcggcgctg
     6301 ccttggcata gtcctttgat ccgttgcagc gcgcgaccca gagcggtccc gcggtctcga
     6361 ttggtgcttt tggaggctcg atcacccgtg ggtgcccgag cggaatgacg agttgagcgg
     6421 cggcgagtgc cgcggggccg agcgctgcct taacgaacat agcttgcccc gttaacgtcg
     6481 atgatgcttc ccgtcgccga cggcggagct tccgttgcga gccagcggat cacttcggcg
     6541 acctcgtcgg tcgacgcgac tcgtccaagg ggaatatcgg cgattatctg cgcgccgccg
     6601 cggccttcga gatattcagc ggtcatctca gagaccgtaa agcccggcgc aacgccaaag
     6661 gcgagtatcc catccgatgc gtagccgcgc gcgatcgtct tggtcattgc gaccattgcg
     6721 ccttttgagg cggcgtaatg ccagtgctgc ggactgtctc cgcgataggc agcgcggctt
     6781 gctatgttaa cgatgcgacc tccgccgcct cgatcgagga agtgcgatac cgcgagccgg
     6841 gacagatccg cggcggcttg caagttgacc gtcatcgttc gcgcccatgc ggcatgccac
     6901 tcctcgtcag gcgcattgtc gctgacggct tcatagatac cagcattgtt gacgagcaca
     6961 tcgatacgcc cgccgagctc gtccattgcg gtatcccaga cattgcgtgg tgcggccggc
     7021 ttcgaaagat cgcccgcgat gaggcaatcg ctaccgagcg tcgagtgacc cacgacatgt
     7081 tggccgtgtt tcttgagaag gccgtaggcg gccgagccaa tacctcggct cgcgccggta
     7141 ataaggatgt tcatggcact gccgattagc ggcaggccgg cacttcgtca cgcctatgct
     7201 gtcaggcagc gcggccagtg acaaaggcct tggcgcttgc cctgaagttc gcgagctgct
     7261 cgctgaagcg cacgaatccc tgttcgacct ggtcgatatc cttggcgacg ctctcggtat
     7321 cgctccggat cgctgcaatc gtcgagctca tcgaatcggc ggcaagtgca gtctcgtcca
     7381 ctgctgcggt gatcatcgta acggtctgag cctggagctc cattgcttcg cggatgcgat
     7441 cggctgagct ttggacttcc tcgaccgtgc cctggattga tgcgttggac tcgaccgtct
     7501 ggcgagtcgc ctgctggatc gccgtgatct tcgccgtgat atcgtcggtg gcgcgggccg
     7561 tttgcgaggc caagctcttc acttcctgag cgacgacggc gaatccacga cctgcgtcgc
     7621 cggcgcgcgc ggcttcgatg gtcgcgttaa gcgcaaggag gtttgtttgc ccggcgatat
     7681 cgcggatcag cccgaggatc gattcgatcg cttcgacatg cgcggaaagt gcctggctca
     7741 ccttcacggc atctcttgcc tgatcaccgg cgcgagttgc cactccggca gccacttcga
     7801 cctcggatcg cgcgtcttcg atggcgcg
//
LOCUS       DASRBJ010000281         3341 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_238371,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000281 DASRBJ010000000
VERSION     DASRBJ010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3341
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238371"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1464
                     /gene="groL"
                     /locus_tag="VE968_07710"
     CDS             <1..1464
                     /gene="groL"
                     /locus_tag="VE968_07710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049566.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HZU51745.1"
                     /translation="KEIELKDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVR
                     EGMKSVAAGMNPMDLKRGIDIAVKKVVEDLKGRSKDVSGSQEIAQVGIISANGDREVG
                     EKIAEAMEKVGKEGVITVEEARGLDFELDVVEGMQFDRGYLSPYFITNPEKMQVELSE
                     PYILIHEKKLSNLQAMLPILEAVVQSGRPLLIIAEDIEGEALATLVVNKLRGGLKVAA
                     VKAPGFGDRRKAMLEDIAILTGGEMISEDLGIKLENVTLNMLGQAKRVTIDKDNTTIV
                     DGNGTRENIEGRVGAIRQQIENTTSDYDREKLQERLAKLAGGVAVIKVGGATEIEVKE
                     RKDRVDDALHATRAAVEEGIVPGGGTALLYATNALDGLKGENDDQTRGIDIVRKALQS
                     PVRQIAENAGHDGAVVAGKLIDSKDQSLGFNAQTETYENLVQAGVIDPTKVVRTALQD
                     AASVAGLLITTEATIAELPEDKPAPAMAGGGMGGMDF"
     gene            complement(1477..1659)
                     /locus_tag="VE968_07715"
     CDS             complement(1477..1659)
                     /locus_tag="VE968_07715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51746.1"
                     /translation="MRKPVVCLLLLVAACHDHEPPAPTAEQSDQLNNAEDMLNGMTTN
                     EEGPTDRSAGPSNRSD"
     gene            complement(1750..2013)
                     /locus_tag="VE968_07720"
     CDS             complement(1750..2013)
                     /locus_tag="VE968_07720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51747.1"
                     /translation="MKKVAIVTAAVLALGLAACNKNNAENNAANETAVENTASTDVNA
                     ASENAGAEANADAALNAAGNDVANAGAEVNSAQNAVANSTTNK"
     gene            2185..3144
                     /locus_tag="VE968_07725"
     CDS             2185..3144
                     /locus_tag="VE968_07725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HZU51748.1"
                     /translation="MSVALPLADRFQALADPTRLRILALLRLMELSVGELAQVLGQSQ
                     PRVSRHLKILADAGVLERRKEGSWVFLTLADANRIDVLFALVDKWADTGTAALFASDA
                     ARTETIRAERAEAANRYFTSHAAVWDQIRSLHVAESEVERAIDRALGGRPLGRLVDIG
                     TGTGRMIELFGPRSSQAIGIDRSSEMLRLARVKLEAAGIASSLRQGDMYALPLLDHSA
                     DNIIIHQVLHYAHSPAKAIAEAARVLEPGGTLLVVDFAAHECEELRERDAHIRLGFED
                     DVMRGWFASAHLSIDHVEHLEGGELTVTLWRGIKAAVPQRRAA"
     gene            3141..>3341
                     /locus_tag="VE968_07730"
     CDS             3141..>3341
                     /locus_tag="VE968_07730"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008600774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0006555 - methionine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HZU51749.1"
                     /translation="MNALEMLGRHRPLFAEARGDIAVSFEFFPPKNEKMEETLWESIK
                     TLEPLHPRFVSVTYGAGGSTRER"
BASE COUNT          673 a          963 c         1047 g          658 t
ORIGIN      
        1 aaggagatcg agcttaagga caagttcgag aacatgggcg cgcagatggt ccgcgaggtc
       61 gcatcgaaga ctaatgatct tgctggtgac ggcacgacca cggcgacggt tcttgctcag
      121 gcgattgttc gcgagggcat gaagtccgta gctgccggga tgaacccgat ggacctcaag
      181 cgcggcatcg acattgccgt gaagaaggtc gtcgaggatc tcaagggccg ctcgaaggac
      241 gtttcgggaa gccaggaaat cgcgcaggtc ggaatcatct cggccaatgg cgatcgtgaa
      301 gtcggcgaga agatcgccga ggcaatggaa aaggtcggca aggaaggggt gatcacggtc
      361 gaagaggcac gtggtctcga cttcgaactc gacgtcgtcg agggaatgca gttcgaccgc
      421 ggctacctgt cgccctactt cattaccaat cccgagaaga tgcaggtcga gctcagcgag
      481 ccttacatcc tcattcacga gaagaagctt agcaaccttc aggcgatgct tccgatcctc
      541 gaggccgttg tccagagcgg tcggccgctc ttgatcatcg cagaggacat cgaaggtgag
      601 gcgcttgcga cgctggtcgt caacaagctt cgcggcggtc tcaaggttgc tgcggtcaag
      661 gctcctggct tcggtgatcg ccgcaaggcg atgctcgagg acatcgcgat cctcaccggt
      721 ggtgagatga tcagcgaaga tcttggcatt aagctcgaga acgtgacgct gaacatgctc
      781 ggtcaggcga agcgcgtcac gatcgacaag gacaacacga cgatcgtcga cgggaatggc
      841 acccgcgaga acatcgaggg tcgggtcggc gcaatccgcc agcagatcga gaacaccacg
      901 tccgactatg atcgcgagaa gctccaggag cgcctcgcaa agctcgcggg cggcgtcgcg
      961 gtcatcaagg tcggcggtgc gacggagatc gaggtgaagg agcgcaagga ccgcgtcgac
     1021 gacgcgcttc atgcgacccg cgccgcggtc gaggaaggca ttgttccggg tggtggtact
     1081 gctctgctct acgcgaccaa tgctcttgac gggctcaagg gcgaaaacga cgaccagacc
     1141 cgcggcatcg acattgtccg caaggctctg cagtcaccgg ttcgccagat cgccgagaat
     1201 gccggccatg acggtgcggt cgttgctggc aagctgatcg acagcaagga tcagagcctc
     1261 ggcttcaatg cccagaccga gacctacgag aatctcgtcc aggctggcgt gatcgatcca
     1321 accaaggtcg ttcgcaccgc actccaggac gctgcgtccg tcgcgggcct gcttatcacc
     1381 acggaagcga ccatcgcgga gcttccggaa gacaagccgg caccagcgat ggccggtggc
     1441 ggaatgggcg gaatggactt ctaaattcgt agaagctcaa tccgaacgat tggaggggcc
     1501 ggcggagcga tccgtcggcc cttcttcgtt agtggtcatg ccgttgagca tgtcctcggc
     1561 attgttgagc tggtccgact gctcggcggt tggtgctggc ggctcatggt catggcaggc
     1621 ggcaacaaga agaagcaggc aaacgacggg ttttctcacg aacggacaat atcactttgc
     1681 ccgagcataa aaaaagggcc gctcgaaacc gagcggccct tcgtttgaat tcgctgtaag
     1741 cgacgaagct tacttgttcg tcgtgctgtt cgcgacggcg ttctgcgcgc tgttgacctc
     1801 ggcgccagcg ttggcgacgt cgtttccagc agcattgagc gcggcgtcgg cattggcctc
     1861 tgcacccgca ttctcgctgg cggcgttcac gtcggtcgac gcggtgttct ccaccgccgt
     1921 ctcgtttgcc gcattgtttt cggcattgtt cttgttgcac gcggcaaggc cgagcgcgag
     1981 gaccgcagcg gtcacgatcg caaccttctt catgagactt tcactccctt cttaaatgcc
     2041 cctggggtgg gcaccaaccc ggacctcaac gttgcgagtc gttcaggtca ggccggcggg
     2101 aatagcgaca atccctacct tcacacaagg gattatttgc acgtccgcga ttgacatata
     2161 aagatatctt tatatcgtta tctggtgagc gtagcgcttc ctcttgccga tcgattccaa
     2221 gcgcttgccg atccgaccag gttgcgcatc cttgctcttc tgcgcctcat ggaattgtcc
     2281 gtcggtgagc ttgcgcaggt ccttggccag agccagccga gggtttcgcg ccatttgaag
     2341 atccttgccg acgccggggt tctcgagcgt cgcaaggaag gtagctgggt gttcttgact
     2401 cttgcggacg ctaaccggat cgatgtcctc tttgcactcg tcgacaaatg ggccgacacg
     2461 ggaacggccg ctctctttgc gtccgatgcg gctcgaacgg agacaatccg cgctgagcgg
     2521 gccgaggcag ccaacagata tttcacgagc cacgccgcgg tttgggacca gatccggtca
     2581 ctgcatgtcg ccgagagcga agttgaacgg gccatcgacc gcgcacttgg cggccgaccg
     2641 ctcggaaggc tcgtcgacat tggtaccggc accggtcgca tgattgaact cttcggccct
     2701 cgctccagcc aggccattgg tatcgatcga tcttcggaaa tgcttcggct ggcgcgggtg
     2761 aaattggagg ccgcggggat cgcgtcgagt cttcgccagg gcgatatgta cgcccttcca
     2821 ctgctcgatc actcggccga caatatcatt atccaccagg tgctccatta tgcacactcg
     2881 ccagcgaaag cgatcgccga ggcagctcgc gtgcttgagc caggtggaac gctactcgtc
     2941 gtcgattttg ctgcgcatga gtgcgaagaa ttgcgggaac gcgacgcaca cattcgtctc
     3001 gggttcgagg acgacgtgat gcgcggctgg ttcgcatccg cgcaccttag catcgatcat
     3061 gtggagcatc tcgaaggagg cgaactcacc gtcaccttgt ggcgcgggat caaggctgcg
     3121 gttccgcagc ggagggcggc atgaacgcgc ttgagatgct cggacgtcac cgtcccttgt
     3181 ttgccgaagc gcgtggcgac attgccgtca gcttcgaatt ctttccgccc aagaacgaga
     3241 agatggagga aaccctctgg gaatccatca agacactcga gccgctccat ccaaggttcg
     3301 tctcggtgac ttatggggcg ggcggctcga cgcgcgagcg a
//
LOCUS       DASRBJ010000282         7346 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_338038,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000282 DASRBJ010000000
VERSION     DASRBJ010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7346
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338038"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1483)
                     /locus_tag="VE968_07735"
     CDS             complement(<1..1483)
                     /locus_tag="VE968_07735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51750.1"
                     /translation="MPSMIAAAPADRLQYQLSEGLNENEFLQQGKVAAHLLLRSGKFP
                     RILVAFPAGNSGVGLWFAETPRNVAWIIPSAPEPVISNDAKGRPLYGIVARAELTTPT
                     LEIRKAVLSSVRVLRDYQAIGTVPALVETKPIIKGDTISWSRDRLDGAPGYSIALQVV
                     HGSLDGGRLIAAADGRIGLRITALSGETPLTPFPAAGLLNGRAAIDPGARDALRFLSY
                     REKFLAGSWRFNTYFGRDTLMSVRLLMPALTPDAVETGLAAVLSRLSPDGQVAHEEDI
                     GEFAVLDHMKTDGSRSDAPVYDYKMIDGNYLLGPVASAWLLDDPRSRERAFRFLAGLD
                     LREHGARKRRGADLVANLKLVLRSAAPFAADQRATNLISLKPGVPVGEWRDSNTGLGG
                     GRYPYDVNAILVPAALRSAARLYAKGLLDPYLTKEDRLLFARASKMADIWSMSAPVFF
                     RVEVDRSTAVRDVTSYAAAVGVPSQAANASLSATGTRFYAVSLD"
     gene            complement(1561..3081)
                     /locus_tag="VE968_07740"
     CDS             complement(1561..3081)
                     /locus_tag="VE968_07740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010164977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan halogenase family protein"
                     /protein_id="HZU51751.1"
                     /translation="MTDRRIRRVVILGGGTAGWMTAAALSKAGENRLFEVTLVESDEI
                     GIIGVGEATIPTIHWFNKLVGLDEAEFMRATKATYKLGIEFVDWAKPGHRYFHPFGRF
                     GAPPDGPMFLHHFIRARLGGLKDKYELYSLGSQAALAGKFAMPVDDPRNWLSTLGTAF
                     HFDASLYARHLRQISEARGVNRLEGKVASVEQDPETGFVTALVTERGQRIVGDLFIDC
                     SGMRGLLIGQTLGSRYEDWSEWLPCDRAMAVPSENVSAPTPYTRSTADDAGWRWRIPL
                     QHRTGNGYVYSSSLISDDEAAETLLANLEGRALAEPRPIRFKTGRRRDAWVKNVVAIG
                     LSAGFLEPLESTSIHLIQSAIAKLLSLFPTRNCEPIVAEQFNRVLAQDYDSVRDFLVL
                     HYHATKDRHQPLWEHCRQMRLPESLVYKEEQFRSTGRIVLGSDELFREASWFAVMVGQ
                     GIAPRDYNPLIEVVSTEDSLAHLKQVREAIAAAVQRMPTHEAFIREQRTAAEPVHS"
     gene            complement(3214..5874)
                     /locus_tag="VE968_07745"
     CDS             complement(3214..5874)
                     /locus_tag="VE968_07745"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU51752.1"
                     /translation="MFRKHNLLATSTSVVAVAAAASLVGASPAFAQEAPPSASNASPV
                     GGQAAGSDQKPGSAQAVEAEQAQSAEGDQPSSVQAIVVTGSTSKRTLLNSSVAITLVN
                     RQQLEQKAPRSTAEVLETIPGFFVEGTAGPVSNNYSVRGLPGGGSEFVRLIEDGMPLL
                     YGALNDDEVLQYDLSYDRVEAIQGGTSGILTENAAGASVNFISRRLNFDRAGGLAKVQ
                     ATTYGDKRADYWYSAPLAHGLAFAVSGYFDSTPGVRKSPFTYDTWRLKAQLEKQFDDG
                     GFIELTYKHWNEHDPYYADQPYSFVNNKIGGVPSLGTQFGNIIGAGFGRIVVPDSCEA
                     GECTRTFSLLEGVHPKGNMYRVDFDKPVSDSISIFARARYTNTTLAFNGVFAGSGTGN
                     AGLAPATDYLTYSSVSPIYSLLQLGQAAFPTATQFGIKSLTDGSIIPASNVAALNALN
                     GNGLLEQTVLNRQTVTQHDFGSDFGFRWNAEGNHWRNSLTVGGMIFSYKQWNDQSGVS
                     TVVNDVRNNSNIYDIVALDSANNVVGTLSNNGLISYGDWGSGINNTKLDSESVYFNNE
                     FVYNDKLHLDFGLRYEHEHTVAHSGNSSPEAIPADIGGVVRTNPNAFNGTYSTSSGSE
                     HPVNYTVGANYVFDPALSLYARYAHSYQTQGVNPKATGLTLYEAGLTYSGYGLLGTVR
                     AFRTQFNNLSSGGGVVPSNPNLSQGFFADTRTNGVDVDAFYRPTFDPLRAFSVHAQLT
                     YQKTKFTNVRTGVIDINGQDISSQVDAFYNGKTPGRTPDWLFTITPQYDLPNGMGNIY
                     ARYKHVGRIFADDGDQLALPGYGVWTIGAEFNLRHNLTLNVSVDNVTNVRGLTEGNPR
                     QGFTQAVVNGYFYGRGIIGTNAMGSLSFAF"
     gene            complement(6244..6366)
                     /locus_tag="VE968_07750"
     CDS             complement(6244..6366)
                     /locus_tag="VE968_07750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51753.1"
                     /translation="MRSHSGGGLDFVAGFAIGLSLVLIVFAAALLARARRKSSR"
     gene            6661..6984
                     /locus_tag="VE968_07755"
     CDS             6661..6984
                     /locus_tag="VE968_07755"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HZU51754.1"
                     /translation="MTNAQQVFVALHDPTRRAVLERLREGPRSVGEIARGLPVTRPAV
                     SQHLKVLKEAGLVEDRSAGTRRIYRIDPQGLGAMRAWLDQFWTAALDNFAAEIERRAT
                     AKENE"
     gene            6981..>7346
                     /locus_tag="VE968_07760"
     CDS             6981..>7346
                     /locus_tag="VE968_07760"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HZU51755.1"
                     /translation="MTTAIHPAPVRKSVFVAASPDQAFDVFANHIGRWWPKSHKISHA
                     DLERPVIEPRAGGRWYERAVDGTECEVGKVLAYAPPHRLLLAWQLRSDWTFDPELITE
                     VEVTFTPEGKGTRVDLEHRK"
BASE COUNT         1503 a         2201 c         2212 g         1430 t
ORIGIN      
        1 cgtcgagcga cacggcataa aagcgtgtcc ctgtcgcact caatgatgca ttcgcagctt
       61 gagacggtac gccgactgca gcggcatagc tggtgacatc gcgaaccgca gtggaccgat
      121 caacttcgac cctgaagaaa acgggcgcgc tcattgacca gatgtccgcc attttggaag
      181 cacgcgcgaa gagcaggcga tcctccttgg tcaggtacgg gtcaagcaaa cccttcgcgt
      241 aaagccgggc cgccgagcga agcgccgctg gaacaaggat cgcgttcacg tcataggggt
      301 agcggccacc gcccaggccc gtattgctgt cgcgccattc gccgacggga actcccggct
      361 tcaacgaaat gagatttgtc gcgcgctggt cggcagcaaa gggcgcggcc gatcgtagca
      421 ccagcttcaa gttggcaacg agatccgctc cccgtcgctt tcgcgcccca tgttcgcgca
      481 agtcgagacc agcaaggaaa cggaatgccc tttcgcgcga tctcggatca tccagcaacc
      541 aagcgcttgc gaccggcccc agcaggtagt tgccgtcgat cattttataa tcataaacgg
      601 gtgcgtccga gcggctcccg tcggtcttca tatgatcgag aacggcgaac tcaccaatgt
      661 cctcttcgtg cgccacttgt ccgtccggcg acaggcgcga caataccgcg gcgagcccgg
      721 tctcgacggc gtcgggcgtc aaggcaggca tcagcagacg gaccgacatc agcgtatcgc
      781 ggccgaagta ggtgttgaac cgccatgaac ccgccaagaa cttctcgcgg tagctaagga
      841 accggagcgc atcgcgggcg ccgggatcaa tcgccgcacg accgttgagg agccccgctg
      901 cgggaaaggg cgtcagcgga gtttcgcccg acaatgcggt aattctaagc ccaattcgtc
      961 cgtcagctgc ggcgatcaga cgtccgccgt cgaggctgcc gtgaacgact tgcagcgcaa
     1021 tcgaatagcc gggcgcgccg tccagccgat cgcgtgacca gctgatggtg tcccctttga
     1081 tgattggttt tgtttcgacg agagcgggca ccgtgccgat tgcttgatag tcccgcaaga
     1141 cgcgcacact cgagagaacg gctttcctta tctcgagcgt cggcgtcgtc agttcggcac
     1201 gcgcgacgat accatagagc ggccgtccct tcgcatcgtt gctgatgacg ggttctggag
     1261 cgctcgggat gatccaagcg acattccgcg gcgtttcggc aaaccacagc ccgacgccgc
     1321 tgttccctgc tggaaacgcg accaggatgc gcgggaattt ccccgagcgc agcagcaagt
     1381 gggcagcaac tttgccctgc tggagaaatt cgttctcgtt gagcccttca ctcagctggt
     1441 attgcagtcg gtcggcgggt gcggccgcta tcatactcgg cacgaacagg ttcactgccg
     1501 cgcaggcgat tgcggccact agacggcgag agcggccaca gtaccgaaaa aggacccggt
     1561 tcatgagtgg actggctcgg cagcggtgcg ctgctcgcgg atgaaagctt cgtgggtggg
     1621 cattcgttgg accgctgcgg ctatcgcttc acggacctgt ttcaaatggg cgaggctatc
     1681 ctcggtcgag accacctcga taagcggatt atagtcgcgg ggcgcaatcc cctgacctac
     1741 catcacagcg aaccaactcg cttcacggaa cagttcgtcc gaacccagta cgatgcggcc
     1801 ggtgctgcga aattgttctt ccttgtaaac caggctttca gggagacgca tctgccggca
     1861 atgctcccac agcggctggt gcctgtcctt cgttgcgtga taatggagca cgaggaaatc
     1921 gcgtaccgag tcatagtcct gcgccagtac ccggttgaac tgctccgcga cgatcggctc
     1981 gcagtttctc gttggaaaca gcgacaggag ctttgcaatt gcactttgta tgaggtgtat
     2041 ggacgttgac tcaagtggct ccagaaaccc agcggaaagc ccgatcgcga cgacattctt
     2101 cacccacgca tcgcggcgcc taccagtctt gaaccggatc ggtcgcggct cggcaagcgc
     2161 gcgtccctcg aggtttgcaa gcaatgtctc agctgcctca tcgtcactga taaggctgct
     2221 cgaatagaca tagccattac ccgttcggtg ctgcagcgga attcgccacc gccatcccgc
     2281 atcatccgcg gtcgaacgcg tgtaaggcgt cggcgccgac acgttttcgc ttgggaccgc
     2341 catcgcccga tcgcacggca accactcaga ccaatcctcg tagcgacttc cgagcgtctg
     2401 gccgataagg agcccgcgca tgcccgagca atcgatgaaa aggtcgccaa cgatccgctg
     2461 accgcgctct gtaacaaggg cagtgacaaa gcctgtctca ggatcctgtt ctaccgatgc
     2521 aaccttgccc tcgagacgat tgacgccgcg cgcttccgag atttgccgaa gatgccgcgc
     2581 atagagcgac gcatcgaaat ggaaagccgt gccgagcgtc gacagccaat tgcgcggatc
     2641 atcgaccggc atggcgaact tgccggcaag agcagcctgg ctcccaagcg aataaagttc
     2701 gtatttgtcc ttaagtccgc caagacgggc gcggatgaaa tggtggagga acatcgggcc
     2761 gtcaggcggt gctccgaaac gaccgaaagg gtggaagtac cgatgccccg gcttcgccca
     2821 gtcaacgaat tcaatgccaa gcttgtacgt ggccttcgtc gcccgcatga actcggcctc
     2881 gtccagccca acaagcttat tgaaccagtg gatggtcggg atcgtcgcct cacccactcc
     2941 gatgattccg atctcgtcgg actcgacgag cgtgacttcg aacagccggt tttcgccggc
     3001 tttcgacaga gcagccgcag tcatccatcc ggcggtcccg ccgccgagaa tgactactcg
     3061 acggatgcgt ctgtcggtca tgatcattcc atctccgagg cgtcgcgaca gctccgggtc
     3121 accgggctct cgcaaccagc ctgcccctaa gcaaatgctc gaggcgcttc gggaagcgcc
     3181 ggggaagacc ttcagccttc cccgccaccg tcgttagaac gcgaaggaca atgaacccat
     3241 tgcgttcgtc ccgatgatcc cacggccgta gaagtagccg tttacgacgg cctgggtgaa
     3301 gccctggcgt ggatttcctt cggtcaggcc ccgaacgttg gtgacgttgt cgacactgac
     3361 gttaagcgtc aggttgtggc gcaaattgaa ttctgcgcca atcgtccaca cgccatagcc
     3421 cggcaaggca agctggtcgc cgtcatccgc gaagatgcgt ccgacatgct tgtagcgagc
     3481 gtagatgttc cccatgccgt tgggcaggtc atattgtggg gtaatcgtaa acagccagtc
     3541 cggcgtgcgg cccggagtct tgccattgta gaaggcatcg acctgcgacg aaatatcctg
     3601 cccattgata tcgatgacac cggtgcggac gttggtgaac ttcgtcttct ggtacgtcag
     3661 ctgcgcgtgg acagagaatg cacgcagcgg gtcgaacgtc ggacgataga aggcatcgac
     3721 gtcaacgcca ttggtccgcg tatcggcgaa gaagccctgg ctgagattcg ggttgcttgg
     3781 gacgactcct ccgcccgagc tcagattgtt gaactgagtc cggaatgcac gaacagtgcc
     3841 gaggaggccg tagcctgaat aggtaaggcc ggcttcatag agggtaaggc cggtcgcctt
     3901 cggattgacg ccctgcgtct ggtatgaatg cgcatagcgt gcgtacagcg agagcgccgg
     3961 atcgaatacg tagttcgcgc cgacggtgta gttgaccgga tgctccgagc cgctgctcgt
     4021 gctgtacgtg ccattgaatg cgttcgggtt ggttcgaacg accccgccga tatcggccgg
     4081 tatcgcttcc ggtgagctgt tgccgctgtg cgcgacggtg tgctcgtgct cgtagcgaag
     4141 tccaaagtcg agatggagct tgtcgttgta gacgaactcg ttgttgaaat agaccgactc
     4201 tgaatcgagc ttcgtgttgt tgatgcccga accccagtcg ccataggaaa tgaggccgtt
     4261 attgctgagc gttccgacca cgttattggc actgtcaagt gcgacgatgt catagatatt
     4321 ggagttgttt cggacgtcgt tgacgaccgt cgaaacgccc gactgatcat tccactgttt
     4381 gtagctgaag atcatgcccc caacagtgag gctgttgcgc caatgattgc cctcggcgtt
     4441 ccagcggaag ccgaaatcgc ttccaaagtc atgctgcgta acggtctggc ggttaagcac
     4501 cgtctgctcg agtaggccgt tcccgttaag tgcattgagc gctgcgacgt tcgatgctgg
     4561 aatgatcgag ccgtcggtga gactcttgat tccgaactgc gtcgcggttg ggaacgcagc
     4621 ctgacctagc tgcaggagac tgtagatcgg cgagaccgac gagtaggtca ggtaatccgt
     4681 tgccggagca aggccggcat tgcccgttcc gcttccggca aacacgccgt tgaacgcgag
     4741 agtagtgttc gtgtagcgcg cgcgagcgaa aatcgagatg ctgtcgctga ccggcttgtc
     4801 aaagtcgacc cggtacatgt tgcccttggg atgaacacct tcgagcaggc tgaacgtgcg
     4861 cgtgcactcg ccggcttcac aggaatcggg aacgacaatc cgcccaaagc ccgcaccgat
     4921 gatgtttccg aactgagttc cgagtgacgg cacgccgcca atcttgttgt tgacgaagga
     4981 gtagggctgg tcggcgtaat aagggtcgtg ctcgttccag tgcttgtagg tgagctcgat
     5041 gaagccgccg tcgtcgaact gcttctcgag ctgagccttc aaccgccacg tgtcataggt
     5101 aaagggagac ttgcggacac cgggcgtcga gtcgaaatac ccgctcacgg caaacgcaag
     5161 gccatgagct aggggcgccg agtaccaata atcggcgcgc ttgtcgccgt aggtcgttgc
     5221 ctgcaccttc gcgagcccgc cagcgcgatc aaaattgagc cggcgcgaga tgaagttgac
     5281 ggatgcgcca gcggcattct cggtcagaat tcccgacgta ccaccctgga ttgcctccac
     5341 gcgatcatac gagaggtcgt attgcagcac ctcgtcatcg ttgagcgcgc catagagcag
     5401 cggcatgcca tcttcgatca ggcggacgaa ctcggaaccg cctcccggaa ggccgcgcac
     5461 ggaatagttg ttcgagactg gtccagcagt gccctcgacg aaaaatcccg gaatggtctc
     5521 gagaacttcc gccgttgacc gtggcgcctt ctgctcgagc tgctggcggt tgacgagcgt
     5581 gatcgcgacc gaggagttga gaagcgtgcg cttgctggtt gatcccgtta ccacgattgc
     5641 ctggacggaa ctcggctggt cgccttcagc cgattgcgct tgctcggcct cgacagcttg
     5701 cgcgctccct ggcttctggt cggagccagc ggcctgacca ccaacggggc tcgcattgct
     5761 cgcgcttggc ggcgcttcct gcgcgaaagc gggggacgct ccgacaagcg atgccgccgc
     5821 ggcaactgcc acaaccgacg tcgacgtcgc gagcagatta tgtttcctga acattctgta
     5881 ctccccctcc ttgaaggccg attctcaaac cggacaggat cgcgggagtt tgtcggagga
     5941 tcattgcacg cgctaacgcg ccgtgccgca taggcggcgt ggcgagttgc agaagatcgc
     6001 gaatgttccc ctttctcccc tcgtcctctc ccctttggct ctgctggact gcgttactgc
     6061 cggaggcagg cgccgatcca atcaggcctc gttatgattg gaagcctaaa agacatcgat
     6121 atcattttca atggcaatgt tgttgaacac caagttcaac aacattgttc gagcaggata
     6181 ttatcgagaa caggaggcgc gaggcgctca ccgcgttcgc cgtttggggt tagctgccgc
     6241 tagtcagcgg gagctcttgc gcctcgctcg cgcaagcagc gcagcggcaa acacgatcag
     6301 gacgagcgag agaccgatcg caaatccagc gacaaagtcc agcccgccgc cgctatgcga
     6361 cctcacgaaa agcagcgtcg aagaagaggc gataatcgct cctgatgatg caagaactgc
     6421 cgcgcgacga ctctggccca atccaacctc caacgcacct tgttgtggca tcaccgccgc
     6481 gcaatcgcaa tggaatgcgc gcattccgga ggtcagcgcg tgccgtgggc gagcttctca
     6541 gcgaccgacc tgatcgtggg acctgccgct ggccttcgcc tgatgctggg gcaatgccac
     6601 accaggcaac caaagcaccg ccggattgac gaaattgtta gcaatcgcta acggtaagct
     6661 atgactaacg ctcagcaggt tttcgtggca cttcatgatc cgacgcgcag ggcagtgctt
     6721 gagcggctgc gcgagggacc acgctcggtc ggggaaatag cccgcgggct tccagtgaca
     6781 cgcccggcgg tgtcccaaca tctcaaggtc ctgaaggagg cgggtctcgt ggaagaccgc
     6841 tcggcgggta ctcggcgcat ctaccgcatc gatccgcagg gacttggagc aatgcgcgcg
     6901 tggctggatc agttctggac cgccgcactc gacaatttcg ccgcggaaat cgaacgccgc
     6961 gccacggcga aggaaaacga gtgacgacgg ccatccatcc tgcgccagtg cgcaaaagtg
     7021 tattcgttgc cgcctcgccc gaccaggcat ttgacgtctt tgcaaaccac atcggccgat
     7081 ggtggcccaa atcgcacaag atcagccacg cggacctcga gcggccggtt attgaacctc
     7141 gcgcgggtgg acggtggtac gaacgtgcgg tcgatggcac ggaatgcgag gtcggaaagg
     7201 tccttgccta tgcgccgccg cacaggttgc ttcttgcttg gcagcttcgc agcgactgga
     7261 cgttcgaccc agagctcatc accgaggtcg aagtgacgtt tacacccgaa gggaaaggca
     7321 cccgcgtcga ccttgaacat cgcaag
//
LOCUS       DASRBJ010000283         3206 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_136962,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000283 DASRBJ010000000
VERSION     DASRBJ010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3206
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136962"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..716
                     /locus_tag="VE968_07765"
     CDS             <1..716
                     /locus_tag="VE968_07765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51756.1"
                     /translation="TDTEIEVYRTRDYPAWLNSVREQLEHLHEQLEQHTKWPCFRVET
                     ANNGSRPAESVLIKVETRGELEIENDEHADDDEAPQGSDRGRNKVPRLALPPIPPRGK
                     TETINPYDFAAGLRTRELDVRNLTAFGLPAAMAAPRRPDRFYWRSGKQGPTDLFELEC
                     AAWRHSETQVQFTIGVRPYSMKEISGAVEFTVHAANLSLPRKAKLPVRFSTVEGSTIE
                     RARSLVQSLIYCARTEHRL"
     gene            complement(802..1608)
                     /locus_tag="VE968_07770"
     CDS             complement(802..1608)
                     /locus_tag="VE968_07770"
                     /inference="COORDINATES: protein motif:HMM:NF023288.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramidase domain-containing protein"
                     /protein_id="HZU51757.1"
                     /translation="MEDIFTGRGTPLGQAGFNAAAAMIGGDVASLWSLLKVETRGFGY
                     LADRRPKILFERHVFRARTAARFDRTAPDLSAPTPGGYIGGPAEYLRLKRAMLLDRQA
                     ALESASWGLGQVMGFNAAKIGFDDVDAMIAAFVGSEDAQLAGCTQFINASPALLAAYQ
                     NRQWARVAFFYNGRDYAKNAYDLKLSQAHADFLANGCPTVPIREVQAYLTYLGFDPRG
                     IDGKVGSGTRAALQAFVAASPTIKNLPNLNGPADAFLPFLKDAFDQRFPS"
     gene            complement(1623..2963)
                     /locus_tag="VE968_07775"
     CDS             complement(1623..2963)
                     /locus_tag="VE968_07775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51758.1"
                     /translation="MFNSQTLEIAIGLVFVFLVASLLCSTVRELIESILKTRAIQLER
                     GIRLLLDDPDGTGTTKELFNHPQLFGLFEGVYDPARLTGFLLRTKTAVERQGTIVYDR
                     AKRLPFGSTLPSYIPSRNFALALLDLAGAGGANDRSSSASTMEVLHANAMALRPGRLR
                     DALLVALSEAEGDFDRARTSLEAWFDSCMDRVSGWYKRETQTILLVIGLIIAVGLNVD
                     AISIASKLAQSNTLRQQVLLQAETTRHQLAVATPAGTPSDDVEVIKEAEAGLGDLIGW
                     SNPRPDHRYLMPVGWIITALAVSLGAPFWFDMLNKLMVVRATVKPYEKSPPEGSDDRP
                     GGPPPAERLEPQGSTAAVGVPAAPQASVPEAPINGFVRLSIDMAQWKTLILSVDGQQQ
                     PVPPDGNIELPLEMGTEHQLLVSAKDAKGKAVSWAQPVRLTYEDDLLPITATLA"
BASE COUNT          657 a          970 c          993 g          586 t
ORIGIN      
        1 cgacggatac cgagatcgag gtgtaccgga cgcgcgacta tccggcatgg ctcaattcag
       61 ttcgcgaaca gctcgagcat cttcacgagc aacttgagca gcacaccaaa tggccgtgct
      121 tccgcgtcga gacggcgaac aatggaagca ggccagccga gagcgtcctc ataaaggtcg
      181 aaacccgggg cgagcttgaa atcgagaacg acgaacacgc tgatgatgac gaggcgcctc
      241 aggggagcga tcgtgggcgc aacaaggtgc ctcgtcttgc gctgccaccc attccgccga
      301 gagggaaaac ggaaacgatt aacccgtacg acttcgcagc tggcttgcgc acgcgtgaat
      361 tggacgtgcg caatctcacg gccttcggcc taccagcggc aatggctgcg ccgcgacggc
      421 cggatcgctt ctactggcgt tccggcaagc agggcccaac tgacctgttc gaactggaat
      481 gcgccgcgtg gcgccattcg gaaacgcagg tccaattcac gatcggtgtg cgcccctatt
      541 caatgaagga aatcagcggc gccgtcgagt tcacggttca cgcggccaat ctgtccctgc
      601 cgcgcaaggc aaagcttccg gtgcgtttct cgacggtcga gggatcgacg atcgaaaggg
      661 cgcgcagtct tgtccagtcg ctgatctatt gcgcgcgcac cgagcatcgg ctctaggagc
      721 tattcggcaa aggacgacct gtcctcgagt atctgaaagg ggcgcaacgc ggctgaagtc
      781 ccgagcggtg ccggcggaaa ctcagcttgg gaagcgttga tcgaaagcgt ccttcaggaa
      841 aggcaggaag gcgtctgccg gaccgttgag attcggcaag ttcttgattg tgggcgatgc
      901 tgccacgaac gcttgcagcg ctgccctggt gccgctgcca accttgccat caatgcctct
      961 ggggtcgaac cccaggtaag tcaaataggc ttggacctcg cggataggca ccgtcgggca
     1021 gccgttggcg aggaaatcgg catgcgcctg gctgagcttc agatcataag cgttcttcgc
     1081 gtaatcacga ccgttataga aaaacgcgac ccgagcccat tgcctattct gataggctgc
     1141 tagaagcgcc gggcttgcat tgatgaactg ggtgcatccc gcaagctggg catcctcgct
     1201 cccgacgaac gcggcaatca tcgcgtccac gtcgtcaaag ccgatttttg ctgcattgaa
     1261 acccatgacc tggccaagcc cccacgacgc gctttccagc gccgcctgcc gatcgaggag
     1321 cattgcacgt ttgagacgca gatactccgc gggcccgccg atgtaaccgc cgggagtggg
     1381 cgcgctgagg tcgggcgcgg ttctgtcgaa acgggcagcc gtgcgcgcgc ggaacacatg
     1441 ccgttcgaat agaatcttgg gcctccggtc agcgagatag ccgaagccgc gcgtttcaac
     1501 tttaagcaac gaccagagcg atgcgacgtc gcccccgatc atcgctgccg cggcattgaa
     1561 gcccgcctgc ccgagcggtg tgccccggcc agtgaagatg tcctccattg agcctccccc
     1621 gattatgcca atgtggcggt gattgggagc agatcatcct cgtaagtaag acgaaccggt
     1681 tgcgcccacg aaaccgcttt tcctttggca tccttcgcac tgaccaacag ctggtgctcg
     1741 gtgcccatct cgagcggtag ctcgatgttc ccgtccggcg gaactggctg ctgctggccg
     1801 tcgaccgaca ggataagggt cttccattgt gccatgtcga tcgaaagccg gacgaagccg
     1861 ttgatgggcg cttcgggtac acttgcttgc ggcgcggcgg gcactccaac ggcggccgtg
     1921 ctgccctgcg gctccagccg ttcagccggc ggcggtcccc cagggcgatc gtcggagccc
     1981 tcgggcggac tcttctcata gggtttgacg gtcgcgcgca cgaccatcag cttgttcagc
     2041 atatcgaacc agaagggcgc tccaagcgaa actgcaagcg cggtgatgat ccagccgacc
     2101 ggcatcaagt agcgatgatc tgggcgcggg ttggaccatc cgatgagatc gccgaggccc
     2161 gcttcggcct ccttgatgac ctcgacgtca tctgagggcg taccggcagg cgtcgcaacg
     2221 gcgagttgat gcctcgtcgt ctccgcctgc agcaatactt gctggcgcaa cgtattgctt
     2281 tgcgcgagct tgctcgcaat cgagatcgcg tcgacattca atccgacggc aatgatcagc
     2341 ccgatcacga gcaggattgt ctgggtctcg cgcttgtacc agccgctgac ccggtccatg
     2401 catgaatcga accaggcttc gaggctggtg cgggcacgat caaaatctcc ttcggcttca
     2461 gacagtgcga caagaagagc gtcgcgcagt cgcccaggac gaagcgccat ggcattggcg
     2521 tggagaacct ccattgtcga agcgctcgaa gagcgatcat tagcgccacc agcgcccgca
     2581 agatcgagca gtgcgagggc gaaattgcgc gacgggatgt aggacggcaa cgtggaacca
     2641 aacggaaggc gtttggcccg atcgtaaaca atcgttccct ggcgctcgac tgccgtcttc
     2701 gttcgcagca ggaaccccgt caacctggcg ggatcgtaga ctccctcgaa caggccaaag
     2761 agctgcggat gattgaagag ttccttggtc gtgccggttc cgtcgggatc atcaaggagg
     2821 aggcggatgc cgcgttcaag ctggatggcc cgggtcttga ggatgctttc gatgagctcg
     2881 cgcaccgtgc tgcaaagcag gctcgcgacc aggaacacga acacgagccc gattgcgatt
     2941 tcaagcgtct gcgaattgaa catggcgacc cccatcatgc cggggcgcaa agcacgtcac
     3001 atcagcgaac gcgcaggctc ggatgacgtg agcatgctac taccgccatc ggcgaccgac
     3061 aagacgtgcg cgcgataaga tcgtgggccg gattgttccg ccgagcgagt tgctcgcgtt
     3121 ggccggcggc tcgtccaagg caaatattcc atctcgcgct ggcgcatcct gcacagaaat
     3181 cggcgcaagt cggcgcattg cgacaa
//
LOCUS       DASRBJ010000284        11589 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_746108,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000284 DASRBJ010000000
VERSION     DASRBJ010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 11589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11589
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_746108"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..226
                     /gene="hspQ"
                     /locus_tag="VE968_07780"
     CDS             <1..226
                     /gene="hspQ"
                     /locus_tag="VE968_07780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007688595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="heat shock protein HspQ"
                     /protein_id="HZU51759.1"
                     /translation="EEWYEAIPEALRPSKEQPFYHLLAENAESTYVAYVSQQNLVVDD
                     SEEPIEHPAIATMFDRMEGGRYRLRPDLTN"
     gene            complement(266..2872)
                     /locus_tag="VE968_07785"
     CDS             complement(266..2872)
                     /locus_tag="VE968_07785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007404307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU51760.1"
                     /translation="MAKPLHNLNDAGDRHHSPSIKYVTRAASLVTASTLALLAAAPAY
                     AQVTPPPAQTPATQNPAGPTGAAQDVHGANSASAPTPQSSADATTQPNNGEIVVTGTR
                     VAGRSRLDTASPVDVLSVNSLQRQGTTELASAIATVAPSVDFPRPSATDATDAIRPAT
                     LRGLSPDETLVLINNVRAHPSASLNINSSVGRGASAVDLNTVPTAALDRVEVLRDGAS
                     ALYGSDAIAGVINLRLRQARSGGSLTVTHGFYDTDVDTSRESRHVTGEPTSTIDAWKG
                     IGFGSDGYLTLSGQVTQREPTNRSDLPASNAIAPAAGPPLQGRFGDPYVMQYTGFANA
                     GMSIAPDWQLFGWLGYMHRHTSSAAFPRPTSASTVSLAALAGYPNGFIPLIDTVSKDL
                     NSAIGVKGVVGDGWNVDLTASYGRNRVDFRTENSANYTFGAASPHNFYDGALIYDQLV
                     GNFDVTKSLPVFESLNLAFGLEGRREGYKITPGEPASYGYPATGGISTASPGAQGFGG
                     FAPINAISKHRENGSIYADAEAQITRQFQLDAALRGETYSDFGQVLTEKLSARYDFSH
                     AFALRATASTGFRAPSLQQEYFTSVASVIQNGQAILTGTFPSTSSVAEALGGQPLRPE
                     KATNFSGGAVIRLGGFDMTVDGYLINLRDQLVLSENIQASSAPNSTVAAQVAAILAPY
                     NVTAARFFINGVRSQAKGIDVVAHYRLNTSGAGIFDLTAAGNVNKIELKKVPSSTAVL
                     NSFPLFARQRQLSLTEGTPGEKVAGTVDWSLREFGATARVTYYGNVVQPGTTPAADIP
                     TGRHAITDLEIRYTIPQGPSLAIGAQNLFDVYPNRVPGNLNAPSGLLGFPFYSPFGYN
                     GRYLYARLGVNF"
     gene            3118..3699
                     /gene="rplU"
                     /locus_tag="VE968_07790"
     CDS             3118..3699
                     /gene="rplU"
                     /locus_tag="VE968_07790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008602299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HZU51761.1"
                     /translation="MFAVVRTGGKQYRVAPGDKIVVEKLDGNAGDRVTLGDVVLAGDG
                     GSLKSTDGLTVAAEIVAQAKADKVTVFKKRRRHNYRRKKGHRQQHTILKIVAIGDQKE
                     QKAPKAAAAAKEPKATSEKPAGAITPEEGAGDIAGKPTANPAPNGDSAAGAEKPAKTS
                     GKKSTAKAESTDGASTENAAPAKGSSKKTPKGK"
     gene            3718..3987
                     /gene="rpmA"
                     /locus_tag="VE968_07795"
     CDS             3718..3987
                     /gene="rpmA"
                     /locus_tag="VE968_07795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010238344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HZU51762.1"
                     /translation="MAHKKAGGSSRNGRDSESKRLGVKKFGGQSVLAGNIIVRQRGTK
                     WHAGTNVGMGKDHTLFALTDGSVAFRDGKLGRKYVHIMPISENQA"
     gene            4157..4717
                     /locus_tag="VE968_07800"
     CDS             4157..4717
                     /locus_tag="VE968_07800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HZU51763.1"
                     /translation="MMFARTPRLLLRPGFPEDAPALAAAIADEAIVRNLAAVPWPYSV
                     RDAEAFLASPRDPILPSFLVFERGNAAPQLVGACGLGRRASGSVEMGYWIARPFWSRG
                     YATEACSALTEIARTLGLKSLEGSHFLDNPASARVLEKLGFVPLGIVAPRMSCARGEE
                     VPARLMRLELEAGRRVAEVRSEALAA"
     gene            complement(4819..5691)
                     /locus_tag="VE968_07805"
     CDS             complement(4819..5691)
                     /locus_tag="VE968_07805"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010185180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HZU51764.1"
                     /translation="MTATTLPTPSDLSITPRDRRFGRESAAPRLWHGGRVEATAIYNA
                     LSTTFPAGEAFFVESVRAFRDGAPQKLAEEIRGFTTQEAIHSREHDAFNRRASEAGYD
                     LSNLERKVEERLAITRDKPPIVSLAATMALEHFTAILAHQLLANPKHLAGAQKETAEL
                     WRWHAAEEIEHKGVAYDTWLHATRKWPSSKRWKLKAKVMLYVTRNFLVDRTAGALELM
                     RQDGVTGIRAWSLLIWYLWVRPGMFRKIAGAWLKFFMPAFHPWNEDDRHLLTVYDESV
                     GPASAGARKVRRAV"
     gene            5720..6307
                     /locus_tag="VE968_07810"
     CDS             5720..6307
                     /locus_tag="VE968_07810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HZU51765.1"
                     /translation="MSIRRTRLSPEESRSAALRAARKLLIEQGPQAVTLKAVAAEIGR
                     THANLLHHFGSAAGLQGELAKSIADSVNGSIAEAVEHARAGETDARVIVDQCFDAFGK
                     EGAGALAAWMILTGNRDALNPILDSIRALVAQLSKGHESQHVAESTLSLVLNALGDSL
                     LGPPIAEALALPRDAARELAAQRLRHRLEVEQPPE"
     gene            6357..6773
                     /locus_tag="VE968_07815"
     CDS             6357..6773
                     /locus_tag="VE968_07815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008832008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity iron permease family protein"
                     /protein_id="HZU51766.1"
                     /translation="MRRFFNWCATKTSAGAGHPLTFATAVGLIVAWAATGPLFHYSDT
                     WQLVINTGTTIVTFLMVFLIQNSQNRDGAAMQAKLDELLRAVDKAREQFIGIEHLTDQ
                     QIELVRAALERHAKELHEKGKEKTTKDSVDRLLERF"
     gene            complement(6774..6950)
                     /locus_tag="VE968_07820"
     CDS             complement(6774..6950)
                     /locus_tag="VE968_07820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51767.1"
                     /translation="MDERIVAVGLLTRRDLNILGPTFDRAWPVEEAPAFNELLRAIDE
                     ADRRLQGKNMTQQH"
     gene            7092..7718
                     /locus_tag="VE968_07825"
     CDS             7092..7718
                     /locus_tag="VE968_07825"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014075240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02281 family clan AA aspartic protease"
                     /protein_id="HZU51768.1"
                     /translation="MPHAAPQWQHLAVYAVVAAVIIMALQRIPYVGRIIRFAFSAGLL
                     AFLIFVLLQQAPYQPELSRLTQKLGLDDQRVSGKELHVSMSPDGHFWVLASINGVERR
                     MLIDSGATVTAISQQTARDAGVDVGSRLAPVILQTANGAAPAKTGAVDEIRIGNIVAR
                     NLRIVTGPGLGNLDVLGMNFLSRLQSWRVEGRTLILVPHHPQASESNA"
     gene            7866..9029
                     /locus_tag="VE968_07830"
     CDS             7866..9029
                     /locus_tag="VE968_07830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51769.1"
                     /translation="MTMFASFFLAGFECSSHRRTDGLRLDLIRSTGHEGCTFNDYLSC
                     AELGLLTIRDGLRWHLIEQEPRRYDWSSWIPMLEAADKAGVQIIWDLCHYGFPDHLKL
                     GSEEFVESFASFSAEATRVHRKITGRAPLFCPINEISYFSWAVNTGYFPRLEQDKRGW
                     VKSRLVTAALAGARAARDVDRQVRLFWAEPLINIRPASGSDEDRSRAEQLRQGQFEAY
                     DMLLGRSAPELGGGAWAADALGFNFYSDNQWIDGGSTIPLGHHEYRRLADMLAEVHQR
                     FGKPIFISETGSEGSARSAWFHYVCDEVREAQARGVKVEGICIYPVTSFPGWDDSRHA
                     EVGLFSTPHSDGRRAVYKPLADELARQRSLFGGARDPAPTKQTHSYEAAASSS"
     gene            complement(9002..10003)
                     /locus_tag="VE968_07835"
     CDS             complement(9002..10003)
                     /locus_tag="VE968_07835"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010338558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HZU51770.1"
                     /translation="MVQLSVLDLAPITSGSNAGEALQNAARLARKAEELGYKRYWMAE
                     HHSMPGIASAATAVALAYVGSKTSEIRIGSGGIMLPNHAPLIIAEQFGTLDALFPGRI
                     DLGLGRAPGTDQAAAYAMRRNLASDANQFPNDVVELMGYFRGENGRVRAIPGEGAKIP
                     IYILGSSLFGAQLAAMLGLPYAFASHFAPQMMMEAIKVYRERFEPSEQLDRPYVMLGF
                     NCFAAESDEEAALLSTSIQQAFVALRTGEPTQLPPPRAGYADTLPLEARAMLQNIFSC
                     SAVGSPATVRRQVDAFIDRTGADELIVTSQIFDPIARLRSYELLMEAVSQDELAAAS"
     gene            10082..11125
                     /gene="obgE"
                     /locus_tag="VE968_07840"
     CDS             10082..11125
                     /gene="obgE"
                     /locus_tag="VE968_07840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014074430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HZU51771.1"
                     /translation="MHFLDQAKIFVRSGGGGPGAVSFRREKFIEFGGPDGGDGGKGGD
                     IVFEAVPGLNTLIDFRYTQHFRAPRGKGGSGSNRTGAGGADLVIKVPVGTQVLADDEE
                     RTLLADLTQAGQRVVLLKGGMGGRGNASYKTSTNRAPRQHQTGEEGEEMWVWLRLKLL
                     ADVGLVGLPNAGKSTFLNSVSNASAKVGDYPFTTLRPQLGVVRHKGREFVVADIPGLI
                     EGAAEGAGIGDRFLGHVERTRLLLHLVDGSAEEPLEAWRIVRGELDSYGEGLEDKPEL
                     IALTKADLLEPGQRSKIVKKLEKATAEKVFPVSAPLEEGMEALLDAIIERLGADAREE
                     APATADTKNWSPL"
     gene            11122..>11589
                     /locus_tag="VE968_07845"
     CDS             11122..>11589
                     /locus_tag="VE968_07845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HZU51772.1"
                     /translation="MRLAITGGTGFIGSHLIDVALAAGHEVNALTRRPQGPRLGVEWI
                     AGDLSARDSLERLVRDAEAIIHVAGTITATNAKGFEEGNVAGTLAMLAAATAGGVQRF
                     VQVSSLAAREPKLSLYGASKARAEELVHSSGLNWAIVRPPAVYGPGDKETLELF"
BASE COUNT         2304 a         3504 c         3635 g         2146 t
ORIGIN      
        1 cgaggaatgg tatgaagcaa tccccgaagc gctgcgtcca tcgaaggagc agcccttcta
       61 tcatctgctc gcggaaaacg cagaatcgac ctacgtagcg tacgtgagcc agcagaacct
      121 tgtggtcgac gacagcgagg agcccatcga acaccctgca atcgccacca tgttcgaccg
      181 aatggaaggc ggccgatacc gtcttcgtcc ggacctcact aactgatcga gggggagaac
      241 aacttctccc cctcctcccc tttgatcaga agttcacacc caagcgggcg tagaggtaac
      301 ggccgttgta cccaaaaggc gaatagaagg ggaacccaag caggccgctc ggtgcgttga
      361 gatttcccgg aactcggttc ggataaacat cgaacagatt ctgtgcaccg attgcgagcg
      421 atggtccctg cgggattgtg tagcggatct cgaggtcggt gatcgcgtgg cgtcccgtcg
      481 gaatgtccgc cgctggcgtt gtgccaggct gaacgacatt gccgtagtaa gtgacgcgcg
      541 cggtcgcgcc gaactcccgc agtgaccagt cgaccgtgcc ggcgaccttc tcgccgggcg
      601 ttccctcggt gaggctaagt tggcgctggc gcgcgaatag cgggaagctg ttcagcactg
      661 ccgtcgagga cggcaccttt ttcaactcga tcttgttgac gtttcccgcg gccgtcaggt
      721 cgaagatgcc cgcgccgctc gtgttgaggc gatagtgcgc gacaacgtcg atgccctttg
      781 cctgcgaacg gacgccattg atgaagaagc gagccgccgt gacgttgtaa ggagcaagga
      841 tcgcggcaac ctgcgctgcg accgtcgaat tcggcgcgga agacgcctgg atgttctccg
      901 ataagaccag ctgatcacga aggttgatga gatatccatc gaccgtcatg tcgaaaccac
      961 cgaggcggat caccgcaccc cccgagaagt tggttgcctt ctccggccgc agcggctgac
     1021 caccaagcgc ttcggcgacc gagctcgtcg aagggaaagt tcctgtaagg atcgcctggc
     1081 cgttctggat gacggaagcg acggacgtaa aatattcctg ctgaagcgat ggagcacgga
     1141 agcccgtcga agccgtcgcg cgaagcgcga aggcgtggct gaagtcgtag cgagcggaga
     1201 gcttctcggt cagcacctgg ccgaagtccg aataggtttc accgcgaagt gcggcatcga
     1261 gctggaactg gcgcgtgatc tgcgcttcgg catcggcgta gatgctgccg ttctcacgat
     1321 gcttgctgat tgcgttgatc ggcgcgaatc cgccgaagcc ctgcgcacca ggcgaagcgg
     1381 tcgagatacc gccggtagcc ggatagccgt aggacgcagg ctcgcccggc gtgatcttgt
     1441 aaccctcacg ccggccttcg agaccgaacg ccagattcaa cgactcaaag actggcagcg
     1501 acttcgttac gtcgaaattg ccgacgagct ggtcataaat gagcgcgcca tcatagaagt
     1561 tgtgcggcga agcagcaccg aacgtgtagt tggcggaatt ctcggtcctg aagtcgacgc
     1621 ggttacggcc gtagcttgcg gtcagatcaa cgttccaccc gtcgcctacc acgcccttca
     1681 cgccaatcgc gctgttgagg tccttggaga ccgtatcaat gagcgggata aagccgttcg
     1741 gatagccagc aagcgctgca agcgacacgg ttgaagcgct cgtcggccgc gggaaggcgg
     1801 cgctcgacgt gtggcgatgc atgtagccga gccagccgaa gagctgccaa tcgggcgcaa
     1861 tgctcatccc ggcattcgca aatcccgtat attgcatgac atagggatcg ccgaaccggc
     1921 cctggagcgg tggtcccgct gccggtgcaa ttgcgttaga cgctgggagg tcggaccggt
     1981 tggtgggctc gcgctgcgtt acttggcccg agagtgtcag gtaaccgtcg cttccaaagc
     2041 cgatgccctt ccaggcatcg atcgtgctcg tcggttcgcc ggttacgtga cggctttcgc
     2101 gcgacgtatc gacgtcggta tcataaaagc cgtgcgtcac ggttagcgac ccacccgagc
     2161 gcgcctggcg gaggcgaagg ttgatgacac cggcgatggc gtcggagcca tagagcgccg
     2221 aagcaccgtc tcgaaggact tcaacccggt cgagcgctgc ggttggaacg gtgttcaggt
     2281 cgaccgccga cgcgccgcga ccaacgctgc tgttgatgtt gagcgaagcc gagggatgcg
     2341 ctcggacatt gttgatgagg accagagtct cgtcgggcga gagaccgcgg agagttgctg
     2401 gccgaatggc gtccgtggca tcggtcgccg agggccgtgg gaagtcgacg gacggcgcaa
     2461 cggttgcgat cgcgcttgca agctccgttg tcccctgccg ttgaaggctg ttcaccgaaa
     2521 gcacgtcgac gggcgatgcc gtgtcgagcc gcgagcggcc agcgacgcgc gtgccggtaa
     2581 cgacgatctc gccattgttg ggctgtgtcg ttgcatcagc gctcgactgc ggggttgggg
     2641 cggaggcgct gtttgcgccg tggacgtcct gcgcggcacc cgttggtccc gccgggttct
     2701 gcgttgcggg cgtctgagct gggggcggag tcacttgcgc ataggcggga gccgcggcga
     2761 gaagagcgag cgtcgatgcc gtcaccaaac ttgccgctcg tgtaacgtac ttgatgcttg
     2821 gcgaatggtg ccgatcgccg gcgtcattca gattgtgcaa aggctttgcc atggagttcc
     2881 tcgtaaattt gattgggttc gtaggagtga caaaatgccc ttgtggcaag cacttggagt
     2941 aggatgtcgt ccgattgcca acgaggcgtt gccgcgctgc aacaaactta tgggctcaag
     3001 cgccggttga cacccgccgg tcactgccat aggcggctcg ctttcctgcg cggccctgag
     3061 gcttatgcgc actcacgcgc gggagcagga ttttctacgg aaagaagaga agagccaatg
     3121 ttcgcagtcg tgcgcacggg cggtaagcaa tatcgcgtcg ccccgggaga caagatcgtg
     3181 gtcgagaagc tcgacggcaa tgcgggcgac cgcgtcacct tgggtgatgt cgtgctcgcc
     3241 ggtgatggcg ggagcttgaa gtcgacggac ggattgaccg tcgctgccga gatcgtcgca
     3301 caggcgaagg ccgacaaggt caccgtcttc aagaagcggc ggcgtcacaa ttatcgacgc
     3361 aagaagggcc atcgccagca gcacacgatc ctcaagattg tcgcgatcgg ggatcagaag
     3421 gaacagaagg cacccaaggc cgcggctgcg gcaaaggaac cgaaagcgac cagcgaaaag
     3481 ccggctggcg caatcacacc cgaggaaggc gccggcgaca ttgccggaaa gccgaccgcc
     3541 aaccccgcgc cgaacgggga ttctgctgcc ggcgcggaaa agccggcgaa gacaagtggc
     3601 aagaagagca cggcgaaggc tgaatcgaca gacggcgcct cgacagaaaa tgctgcacct
     3661 gctaagggca gctccaagaa gacgcccaag ggcaagtaat caggacttta tttcgtcatg
     3721 gcacataaga aagcaggcgg ctcgtcccgc aacggccgcg acagtgagag caagcgcctt
     3781 ggcgtcaaaa agttcggcgg ccagtcggtc ctcgccggca acatcatcgt tcgtcaacgc
     3841 ggcacgaagt ggcatgcggg gacgaacgtc ggcatgggca aggaccatac gctttttgca
     3901 cttacggacg gctccgtcgc atttcgcgac gggaagcttg gtcgcaaata cgtgcatatt
     3961 atgccgatta gcgagaacca agcataggaa cggtcagaaa gggaccgttc ccacaaaggg
     4021 gcggcccgga cgagatctaa aaggatcgag accagatagg gagaagggga gccccggaag
     4081 gggtctcccc tttttctttg ccttctcccg aaactgtcac gggcggcgag tagtcgtgcc
     4141 ggaccagagg agaagaatga tgttcgcgag aacaccaaga ttgctgctga gaccgggttt
     4201 cccggaggat gcaccggcgc ttgccgcggc gatcgccgac gaagcgatcg tccgcaacct
     4261 tgccgccgtg ccgtggcctt attcggtccg cgacgcggaa gcatttcttg ctagcccgcg
     4321 cgatcccatt ctcccctcct tcctggtgtt cgagcgcggc aatgccgcgc cgcaattggt
     4381 cggcgcgtgc ggtttgggac gtcgcgcgtc agggtcggtc gaaatgggct attggatcgc
     4441 gcgtccgttc tggagccgcg gctatgcgac cgaagcctgc tcggcgctga cggagatcgc
     4501 gcgcacgctt ggcttgaaga gcctcgaagg ctcgcacttc cttgacaatc cggcgtcggc
     4561 acgcgtgctt gagaaactgg gcttcgttcc cttgggcatt gtcgcgccac gcatgagctg
     4621 cgcccgaggg gaggaagtcc ccgcacggtt gatgcggctt gaactggagg cgggccggcg
     4681 agtggccgaa gtccgcagcg aagcgctcgc ggcctgacca agtcaaacag gtaagcctca
     4741 caaagggcgg ctcgatgaag aaggcatcgg gccgcccttg ctgcgaaagg cgaccgtcgc
     4801 gaacgacagt aaacgtggtc agaccgcgcg ccgaaccttc cttgcgccgg ccgaagcggg
     4861 gcctacactc tcgtcgtaga cagtgagaag atggcgatca tcctcattcc acggatgaaa
     4921 agccggcatg aagaacttga gccaggcgcc agcgatcttg cggaacatgc ctgggcgaac
     4981 ccagaggtac caaataagaa gcgaccaggc cctgatgcca gtcacgccat cctgtcgcat
     5041 gagctcgagc gcgcccgcgg tccggtcgac gagaaaattt ctcgtaacgt agagcatgac
     5101 cttggccttc aatttccagc gcttcgagct tggccatttg cgggtggcgt ggagccaagt
     5161 gtcataggca acgcccttgt gctcgatttc ctcggcggcg tgccagcgcc ataactcggc
     5221 cgtttccttt tgcgcgccgg caaggtgctt cggattggca agaagctggt gcgcaaggat
     5281 tgccgtgaaa tgttcgagag ccatggttgc cgcaagactg acgattggcg gcttgtcgcg
     5341 cgtgatcgct aggcgctcct caactttccg ttcaaggttt gaaagatcat agcccgcttc
     5401 gctcgcgcgt cggttaaacg cgtcatgctc acggctgtgg atcgcctcct gcgtcgtgaa
     5461 ccctcttatc tcctcggcga gtttttgggg cgcaccgtcc cgaaacgcgc gcacgctttc
     5521 gacaaagaat gcttcccccg ccggaaaagt cgtcgataac gcgttgtaga tagctgtcgc
     5581 ttctacgcgt cctccgtgcc acaaccgcgg cgcggcgctc tcgcgtccga aacgacggtc
     5641 cctgggcgtg atgctgaggt cgctgggcgt cggcagagtc gttgcagtca tgagtggaaa
     5701 gatagcttaa cttacaccag tgtcaataag acgaacacgc ctctcacccg aagaaagtcg
     5761 ctcggccgcg cttcgcgcgg cgcgcaagct cctgatcgag caaggtccgc aggccgtgac
     5821 gctgaaggcg gtcgcggccg agatcggccg aacccacgcc aacctgctcc accattttgg
     5881 ctcggccgca gggctccagg gcgaactcgc caaatcgatt gccgattccg tcaatggaag
     5941 catcgccgag gcggttgagc acgcacgcgc cggcgagaca gacgcgcgcg tgattgtcga
     6001 ccaatgtttt gacgcgttcg gcaaggaagg cgctggagca cttgctgcct ggatgatcct
     6061 caccggcaat cgcgacgcgc tcaaccccat actcgactcg atccgggcgc tggtggcgca
     6121 gctctcgaaa ggccacgaat cgcagcatgt cgccgagagc accctgtcgc tcgtcctgaa
     6181 cgcgcttggc gattcgcttc ttggaccacc gatcgccgaa gcacttgccc tgccccgcga
     6241 cgcggcgcgc gaacttgccg cacaacgcct ccgccatcgt ctcgaggtcg agcagccgcc
     6301 ggaatgaact ttcaagactg gcggcaccac ttcgttccac aggcgttacg tcgttaatgc
     6361 gacgcttctt caactggtgt gcgacaaaga cctccgcggg tgccgggcat ccgctgacgt
     6421 tcgcgacggc ggttgggctg atagttgcct gggccgcgac ggggccgctc ttccattatt
     6481 ccgatacctg gcagctcgtc atcaacaccg gcaccaccat cgttactttc ctcatggtgt
     6541 tcctcatcca gaacagccag aatcgtgatg gcgcggcgat gcaggcgaag ctcgacgagc
     6601 tcctccgagc ggtcgacaag gcgcgcgagc agttcatcgg catcgagcat ttgaccgacc
     6661 agcagatcga actcgttcgt gccgcgctcg aacgccacgc caaagagctt cacgagaaag
     6721 gcaaggagaa gacgaccaag gatagcgtcg atcgccttct cgaacgtttc tgatcaatgt
     6781 tgctgggtca tattcttacc ttgcagccgc cggtcagcct cgtcgattgc ccgtagcagt
     6841 tcattgaacg cgggcgcttc ctcgactggc catgcacgat cgaacgtcgg acccaagatg
     6901 ttcaaatcac gcctggtaag caaaccgaca gccacgatgc gctcgtccat ggtacgctcc
     6961 gtgacctgat ttaagttaga aacgcccgca agcgcttgag gtgcctagcg tttcacctga
     7021 gaatcggttt gccggcttga accaagtacg agccgcaacg acatgccatg atcgcgatgt
     7081 tcgaaacctt catgccgcac gccgccccac aatggcagca ccttgcagtc tacgccgtcg
     7141 tcgccgcggt cattatcatg gcgcttcagc gtatcccgta cgtcgggcgg atcattcgct
     7201 tcgccttctc tgcgggcctg ctggcgttcc ttatattcgt ccttctgcag caggcaccat
     7261 accagccgga gctttcgcgg ctgacgcaaa agctcggcct cgatgaccaa cgtgtgtcgg
     7321 gcaaggaact ccacgtcagc atgtcacccg acggccactt ctgggtactc gcatcaatca
     7381 atggtgttga gcggcggatg ctgatcgata gcggcgcaac cgtgacggcg atttcacagc
     7441 agaccgcccg tgacgctggg gtcgacgttg gctcgcgcct tgcaccggtc atccttcaga
     7501 cggcgaacgg cgcggcaccc gcgaagaccg gtgcggtcga cgagatccgg atcggcaata
     7561 tcgttgcgcg aaacttgagg atcgtcacgg ggccgggtct cggcaacctc gacgtccttg
     7621 gaatgaactt cctctcgcgg ctccaatcct ggcgtgtcga aggacgaacg ctgatcctcg
     7681 tcccgcacca tccgcaggcg agcgaaagca acgcgtgacc gctcttcatt cgcctagctt
     7741 cttcggctga gatcaccgga gtgtcggccg acaaggtgga gacgtgacga tgcgccccca
     7801 aggacttcgc tcattcgcat ttcagtcgtg gcaaccgctc gagcgaacat gcatttaggt
     7861 ctcccatgac gatgttcgcg agcttcttcc tcgcaggctt cgaatgctca tcacaccgga
     7921 ggaccgacgg gcttcggctc gatctcatcc gaagcacggg ccatgaaggc tgcaccttca
     7981 atgattatct ttcctgcgcc gagcttggat tgctgacgat ccgtgacggg cttcgctggc
     8041 acctcatcga gcaggagcct cgccgctatg actggtcgag ttggataccg atgcttgaag
     8101 cggctgacaa agccggcgtc caaatcattt gggatctctg ccactacggc tttcccgatc
     8161 atctgaagct tggcagcgag gagttcgtcg aaagctttgc cagcttctca gccgaagcga
     8221 cgcgagtcca tcgcaagatc acgggccgcg cgccgctctt ctgcccgatc aacgagatct
     8281 cctatttcag ctgggccgtg aataccggct atttcccgcg gctcgagcag gacaagcgcg
     8341 gatgggtgaa gtcgcgcctc gtaacggccg cgctcgccgg ggcacgcgca gcgcgcgacg
     8401 ttgatcgcca ggtaaggctg ttctgggcag aacccttgat caacattcga ccggcaagcg
     8461 ggagcgacga agatcgctcg cgcgccgaac agctgcggca agggcagttc gaagcctatg
     8521 atatgcttct tgggcgttcc gcgcccgagc ttggcggcgg cgcgtgggca gccgacgcgc
     8581 tcggcttcaa cttctactcg gacaatcaat ggatcgacgg cggctcaacc attcctcttg
     8641 gccaccacga gtatagacgc ctcgccgaca tgctcgccga agtgcaccaa cggttcggca
     8701 agcccatctt catctcggaa accggctcgg aaggttcagc aaggagcgcc tggttccact
     8761 atgtgtgcga tgaagtccgc gaagcgcagg cgcgcggcgt taaggtggaa gggatttgca
     8821 tctatcccgt cacaagcttt ccgggatggg atgacagtcg ccatgccgag gtcggcctct
     8881 tcagcacacc acactcggac ggccgacgag ccgtctacaa gccgcttgcc gatgaactcg
     8941 cgcgccagcg ctcgctgttc ggaggcgctc gggatcctgc gccaacgaag caaacgcact
     9001 cttatgaagc cgcggcaagt tcgtcctgag agacggcttc catcaggagt tcataggagc
     9061 gcagccgcgc gatcggatca aagatttgcg acgtgacgat cagttcgtcg gcgccggttc
     9121 gatcgatgaa cgcgtcgacc tggcgccgca ccgtcgcggg cgacccgacc gccgaacagg
     9181 aaaagatgtt ctgcagcatc gcacgggcct cgagcggaag cgtgtcggca taaccagcac
     9241 gcggcggcgg aagctgcgtc ggctctcctg ttcgcaaggc cacgaacgcc tgctggatcg
     9301 acgttgaaag caacgccgct tcttcgtcgc tctcggcggc aaagcagttg aacccgagca
     9361 tcacataggg ccggtcgagc tgctcagacg gctcgaaacg ctcgcggtag acctttattg
     9421 cctccatcat catctgcggc gcaaagtgcg aggcaaaagc gtaggggagg ccgagcattg
     9481 ccgcgagctg cgctccaaaa aggctcgagc ccaatatgta aatggggatc tttgcgcctt
     9541 caccgggaat cgcgcgaact ctcccattct cgccgcggaa atagcccatc aattcaacca
     9601 catcgttcgg aaactggttg gcgtcggaag ctagattgcg gcgcattgca taggctgctg
     9661 cctggtccgt gcccggcgct cgaccaagcc caaggtcaat tcttccgggg aacaaggcgt
     9721 cgagcgtccc gaactgctcg gcaatgatca gtggcgcgtg gttgggcagc atgatcccgc
     9781 ccgaaccaat ccggatctct gaggtcttcg agccgacata ggcaagtgca acggccgttg
     9841 ctgcgctcgc aattcccggc atcgaatgat gctcggccat ccagtagcgc ttgtagccaa
     9901 gctcctcggc tttgcgcgca agccgcgccg cgttctggag cgcttcgcca gcattcgaac
     9961 cggaagtgat cggtgcaaga tcgaggacgg acagttgaac catcgtcatg agatggtcgg
    10021 caaaccaatc atttcaatgc gaggttcccc ttcccgctcg catcgcctaa ctcgcgccgg
    10081 gatgcatttt ctcgatcagg caaaaatctt cgtgcgctca ggtggcggcg gccccggcgc
    10141 cgtcagcttc cggcgcgaga agttcatcga gttcggtgga ccggacggcg gtgatggcgg
    10201 caagggtggg gacatcgtct tcgaagccgt gccggggctc aatacgctca tcgactttcg
    10261 ctacacgcag cacttccgcg cgccgcgggg caagggtggc tcgggctcga accgcaccgg
    10321 cgctgggggc gccgacctcg tgataaaggt tcccgttggc acccaggtcc ttgccgacga
    10381 tgaggagcga acgcttcttg ccgatcttac gcaagccggc cagcgcgtcg ttctcctcaa
    10441 gggcggcatg ggagggcgcg ggaacgccag ctacaagacg tcgaccaacc gcgctccgcg
    10501 gcagcaccag acgggcgaag aaggcgaaga gatgtgggtg tggctgcgtc ttaagcttct
    10561 ggcagatgtt ggtttggtag gattgcccaa tgcgggtaaa tcgaccttcc tcaattcggt
    10621 gagcaacgcc tcggcaaagg tgggtgacta tccgttcacg acccttcggc cgcagctcgg
    10681 agtcgtgcgc cacaagggac gcgagtttgt tgtcgcggat attcccggcc tcatcgaagg
    10741 cgccgcggaa ggtgccggga tcggcgaccg ctttctgggc cacgtcgaac gaacccgcct
    10801 ccttctccac ttggtcgatg gctcagccga ggagccactc gaggcatggc gtatcgttcg
    10861 aggcgaactc gacagttatg gtgaaggcct tgaggacaag cccgagctca tcgcgctcac
    10921 caaggccgac ctgctcgagc cagggcaacg ctcgaagatc gtcaagaagc tcgagaaggc
    10981 gaccgctgaa aaggttttcc cggtgagcgc tccactcgaa gaaggaatgg aggccctgct
    11041 cgacgcgatc atcgagcgcc ttggtgccga tgcacgcgaa gaagcgccgg caacagcaga
    11101 tacaaagaac tggtcgccgt tatgaggctc gcgatcaccg gcgggacggg gtttatcggg
    11161 tcgcacctga tcgacgttgc gctcgctgct ggccacgaag tcaatgcgct gacgcgtcgc
    11221 ccgcaaggcc cgcggctcgg ggttgaatgg attgcgggcg atctctcggc ccgcgattca
    11281 ctggaacggc tcgttcgcga tgccgaagca attatccatg tcgctggaac gatcacggcg
    11341 accaatgcca agggcttcga ggaaggaaat gtcgctggaa cgcttgcaat gcttgccgcg
    11401 gcgacggcag gcggggtgca gcgtttcgtg caggtctcct cgcttgccgc ccgcgagccc
    11461 aagctctcgc tctacggcgc ctccaaggct cgtgccgaag agctggtcca cagctcgggg
    11521 ctcaattggg ccatcgttcg gccgcccgcg gtctatgggc ccggcgacaa ggaaacgctg
    11581 gagctgttc
//
LOCUS       DASRBJ010000285         2167 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_182487,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000285 DASRBJ010000000
VERSION     DASRBJ010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2167
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182487"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..1164)
                     /locus_tag="VE968_07850"
                     /pseudo
     CDS             complement(1..1164)
                     /locus_tag="VE968_07850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516407.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(1266..>2167)
                     /locus_tag="VE968_07855"
     CDS             complement(1266..>2167)
                     /locus_tag="VE968_07855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017668734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HZU51773.1"
                     /translation="AAQQLNYKVDKNASGLRRQQTKTLALLFFEEAPGAALLNPFYLS
                     LVGPMVRRCAAYGYDLLISIQQLSSDWHVDYEDSRKADGIILLGYGDYLEYRPRLEKL
                     VASGAHFVRWGSARQGEVGATVASDNEQGGFDATSHLLQQGRRRIAFVGTVDPGYPEF
                     LERWNGYRRALAAAAIELDERLQVDADPREEAGRRAVERLIAREADFDAVFAACDISA
                     IGVMHALQAIGRRVPEDVGVVGFDDIPSASLSSPPLTTVTQDPRQASDALVEAIITSI
                     ENGTPTNRILPVKLKVRESSLRR"
BASE COUNT          491 a          666 c          624 g          386 t
ORIGIN      
        1 catcgctttg ccgagtgacc gagcaagcaa cgggaggaga gttactgaag cgaccgcggc
       61 aacgccgttg taaatggcga agagctcgcc aacgtaattg cccgcggtct gaaaggccgg
      121 actggccgcg ttcgacgatc cgtaaaaatc ctgggcaacg accggagtgg taaataccca
      181 catcgtgtaa agtgcagacc aggtgaaaaa ctgcactaac gcaaggcgtt tcatgagcgg
      241 cggcatgccc gcgaaatcgc cgaccacaag cgcaaggatg tttttttgtt tgccgcgctt
      301 ggcaagttcg atggcaatga gccgcgctag gccataagcg agaagaagcg ccccgagcag
      361 atatacttcc ttctgaaggt gaaagatcga gacgcaatag atcactgcac agcccgcaat
      421 ggcccacgcg atgctcggga cattgctacg catagcaagg acggcaagct gctggtcgga
      481 accatcgccg ccgtcagcat cctcaccaaa gagcgccaat tcctgaggcg catattcgcg
      541 ggttgtaatg acggtccatg acacggcggc aacgagagcc gcagcgccga accagaagct
      601 cagctggacg gttgctggaa tgcccccagc ctgtgcgacg ttcgacacgc caacgcggtc
      661 gagcagctac gggaagatcg aaccaacgac cgcacccgcc ccaatgaacg cggtttgcac
      721 cgcataaccc gccgtatgct ggtcctttcg caacatgtcg ccgacaaatg cgcgaaatgg
      781 ctccatcgaa atgttgagac ttgcgtcgag ggtccagagg aggatggctg cgaagaaaag
      841 ctgcgcggcc aagggcatca gcaacaagga cagtgccgcg agaaaagcac cgccgacgaa
      901 atacggccgc cttcttccaa gccttccaag ccaggtacgg tccgaaaggt gtccgatcag
      961 tggctgaacc aggagtccgg tcaacggcgc ggcaatccag agcgctggca gatcatcaac
     1021 gctcgatcca agcgactgga agatccgaga catgttcgcg ttctggagag caaacccgat
     1081 ctggataccg aagaacccaa aagagatatt ccaaagaccg gccaaggatt gccgcggctt
     1141 ctcacgcacg accgtctcgt tcattcacca ctctcccccg cgaacgctgg cagatggcgg
     1201 ctccgggcac aacggccgtg tctctgctgc atacgaatac gcaccggcag catgaaccgg
     1261 atcactcagc gacgaaggct cgattctctc actttgagct tgaccggcag aatgcggttc
     1321 gtcggcgtgc cattctcgat cgaggtgata atcgcctcga cgagcgcatc gctcgcctga
     1381 cgaggatcct gcgtcacggt cgttagcggc ggactggaga ggcttgcgga cgggatatcg
     1441 tcaaagccga ctacgccaac gtcttcgggt actcggcgtc cgatcgcctg aagcgcgtgc
     1501 atgacgccga tcgcggagat atcgcaggcc gcgaaaacgg cgtcgaaatc cgcctcgcgc
     1561 gcaatcagcc tctcgaccgc tcgacgcccg gcttcttccc ttgggtcggc atcgacctgc
     1621 agccgctcgt ccagttcaat ggcggcggcc gcgagtgctc gtcgatatcc attccaccgt
     1681 tccaggaact cgggatagcc cggatcgacc gtgccgacga acgcgattct tcttcgcccc
     1741 tgctgcaata agtgtgatgt tgcgtcgaac ccgccctgct cgttgtccga cgcgacggtc
     1801 gcaccgactt cgccttgcct tgccgacccc cagcggacaa aatgagctcc gctcgcgacg
     1861 agtttctcga gccgcggccg atactcaaga taatcaccgt atccgagcag gattatcccg
     1921 tcggccttgc ggctgtcctc gtaatcaaca tgccaatcgg aggatagctg ctggatcgag
     1981 atcagaagat catagccata ggcggcgcac cgacgcacca tcgggcccac cagcgacagg
     2041 tagaacgggt tgagcagcgc tgcacctggc gcctcctcaa agaagaggag ggcgagtgtc
     2101 ttcgtctgct gtcgcctcag tcccgatgcg ttcttgtcaa ctttgtaatt tagttgttgc
     2161 gccgcct
//
LOCUS       DASRBJ010000286         4466 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_600504,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000286 DASRBJ010000000
VERSION     DASRBJ010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4466
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_600504"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..818
                     /locus_tag="VE968_07860"
     CDS             <1..818
                     /locus_tag="VE968_07860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006833305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HZU51774.1"
                     /translation="IAQYIYARGTANGKRVQAFGGAKNHGIVMPDADLDQVVNDLAGA
                     AFGSAGERCMALPVVVPVGEETANRLREKLVPAIESLRVGVSTDPEAHYGPVVSKAHK
                     ERIENYIQMGIDEGAELVVDGRGFTLQGHEEGFFVGPTFFDHVTPQMKAYKDEIFGPV
                     LQMVRARDFEEAVRLPSQHEYGNGVAIFTRNGHAAREFTARVNVGMVGVNVPIPVPVS
                     YHSFGGWKRSGFGDIGQYGQEGLRFWTKTKVVTQRWPDGSVTGENAFVIPTMG"
     gene            885..1328
                     /locus_tag="VE968_07865"
     CDS             885..1328
                     /locus_tag="VE968_07865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51775.1"
                     /translation="MILLAMAAAAAAQWTGPHTEEYDGPGYFCGGGYAVHLLKGDRAL
                     VLPQSASAGVQGVRLVLGGREVNLWSGAPRESGRLVLRYGGTIVTEQAEGRAVSYTVS
                     DQTDFALRLTSSAFRGFGGDTWFFARANFRSTAENGVHCLAAVSY"
     gene            1410..1895
                     /locus_tag="VE968_07870"
     CDS             1410..1895
                     /locus_tag="VE968_07870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51776.1"
                     /translation="MIRLPFIAAFAILAIAACSNRGPVDVQAKADAPLPEINAPAPSA
                     LGEPHGNTVPAKPEPAPAARIPAALQGRWALDPTDCSSPPNRAKGLLVVTPTLLRFYE
                     SRAVPASDIGFDESSIGGNFAFNGEGRSWTKYEALKVANHRLTRTEINPTASFSYAKC
                     S"
     gene            1879..2127
                     /locus_tag="VE968_07875"
     CDS             1879..2127
                     /locus_tag="VE968_07875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51777.1"
                     /translation="MRNAARFLIPILGVAALAACHKQHQNQVASQDMSIEDNLSDNGT
                     DSNASIETLPPDESSTTSNGELNQGEDNPDVNDVGNGD"
     gene            2146..2769
                     /gene="gstA"
                     /locus_tag="VE968_07880"
     CDS             2146..2769
                     /gene="gstA"
                     /locus_tag="VE968_07880"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: protein motif:HMM:NF007831.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase GstA"
                     /protein_id="HZU51778.1"
                     /translation="MKLYYSPGACSQAPHILLHEIGLDHDVARVDLKAKKLADGGDYL
                     KINPKGSVPALELDSGEVLTENAVILQYLGDRTNWPEVFPPLGDFRRYRVLEMLNYIT
                     TELHKRFGLLFNPRTLDETKALVIEELGRKLDFVEQRLGDGPFLFGDTITLPDPYLFV
                     ITGWAEKMLGGLNRWPNLAAFRRRMLERSSVRNVLRLEGLLEEEAAG"
     gene            2782..3924
                     /locus_tag="VE968_07885"
     CDS             2782..3924
                     /locus_tag="VE968_07885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HZU51779.1"
                     /translation="MSQFDLTEDQLQIQEMARKFTADAITPFAAEWDEKHVFPKDTIR
                     EAAQLGFGSIYVSEESGGIGLGRLDAALIFEALAYGCPSTSAFISIHNMASWMIDRFG
                     SAEVKQKYLPSMINMERMGSYCLTEPSSGSDAAALKTRALRDGDHYVVSGSKAFISGG
                     GENDIYVSMVRTGEEGPKGITCLVIEKDMPGVSFGAQERKLGWHSQPTAQVNFDEVRV
                     PVVNRVGAEGEGFRIAMMGLDGGRLNIGACSLGGAQRCLDETVRYTKERQQFGHPIAD
                     FQATQFTLADMETELEAARYLLYVAAAKVTANAADKTRFAAMAKRLATDTGSSVVDRA
                     LQLHGGYGYLMDYPIERFWRDLRVHSILEGTNQIMRVIVSRDMLRQ"
     gene            3921..>4466
                     /locus_tag="VE968_07890"
     CDS             3921..>4466
                     /locus_tag="VE968_07890"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HZU51780.1"
                     /translation="MSDVLIATQERVGRIRLNRPKAIHALTKQMCEVMSEALLQWLHD
                     DDVEAVVIDHAEGRGFCAGGDVVMLARSGNEDASDAKAFFFAEYRLNHLLFTYPKPTV
                     AIMDGITMGGGVGISLPCNFRIATENTRFAMPETGIGLFPDVGGGWYLPRLPGRVGEF
                     IALTGARLDGAECCYLGLATHY"
BASE COUNT          925 a         1287 c         1354 g          900 t
ORIGIN      
        1 atatcgccca atatatttac gcgcgcggta cggcgaatgg caaacgcgtg caggccttcg
       61 gcggcgcgaa gaaccatggc atcgtcatgc ccgacgccga tctcgaccag gtcgtcaatg
      121 accttgccgg cgccgcgttc ggttcagctg gtgagcgatg catggccctt cccgtcgtcg
      181 tgccggttgg cgaagagacc gcgaaccgtt tgcgcgagaa gctcgtcccc gcgatcgaat
      241 cgctacgcgt cggagtctcg accgaccctg aagcccatta tggccctgtc gtcagcaagg
      301 cgcataagga gcgcatcgag aattacatcc agatgggcat cgatgagggc gccgagctgg
      361 tggtcgacgg ccgcggcttc acattgcagg gccatgagga aggattcttc gtgggcccca
      421 ccttcttcga tcacgtcact ccgcaaatga aggcctacaa ggacgagatt tttggtccag
      481 tcctgcagat ggtccgtgcc cgcgacttcg aggaagcggt gcgcctccct tcacagcacg
      541 aatatggaaa tggcgtcgcg atcttcaccc gcaacggcca tgccgcgcgc gaattcaccg
      601 cgcgagtgaa tgttggaatg gtcggcgtga acgtgcctat accggtgcct gtctcgtacc
      661 acagtttcgg cggctggaaa cgttcgggct tcggcgacat tgggcaatat ggtcaggaag
      721 ggcttcggtt ctggacgaag accaaggtcg ttactcaacg ttggcccgac ggcagcgtca
      781 ccggcgaaaa tgcgttcgtg attccgacca tgggatgaga ttggcgcaag ccaacgcatg
      841 ggcgtacaag cagcttcttg tctgcgcgga tgtgggggtg agcgatgatc ttgctagcca
      901 tggcagcagc agcggctgca caatggacgg ggccacatac cgaggaatat gatggccccg
      961 gctatttttg cggcggcggc tatgctgtcc atctgctcaa aggcgaccgt gcgctcgtcc
     1021 tgccacagtc cgcgtccgcc ggagttcagg gcgttcggct cgttcttgga gggcgcgagg
     1081 taaatctctg gtcaggcgct ccgcgcgaga gcggtcggct ggtccttcgc tacggtggaa
     1141 caatcgtcac tgagcaagct gaaggtcgcg cggtaagcta taccgtgtcg gaccagacgg
     1201 attttgctct gaggctgacg agtagcgcgt tccgcggttt cggaggcgac acgtggttct
     1261 tcgcgcgcgc aaacttccgt tcaacggccg aaaatggcgt gcactgcctg gcagcggtca
     1321 gctactgagg tccgagattc caccgcggaa aaggcacgcg cagcaaaaag gcactgcaac
     1381 aacattggta tctaggttgt tgaaggctcg tgattcgatt gcccttcatc gccgctttcg
     1441 cgatcctcgc aattgctgct tgcagcaatc gtgggccggt cgacgtccaa gcgaaggcag
     1501 atgcccccct cccggagatc aacgccccag cgccaagtgc gctcggcgaa ccgcacggga
     1561 atacagttcc tgcaaagccg gagccggcgc ccgccgccag aatcccagcc gcgctccagg
     1621 ggcgatgggc gcttgatccg accgactgca gctcgccgcc aaaccgcgcg aagggcctgc
     1681 tggtcgtgac gccgaccttg cttcgcttct acgagtcgcg agcggttcca gcgtcggata
     1741 tcggctttga cgagagttcc atcggcggca atttcgcctt taacggcgag ggtcggagct
     1801 ggactaagta cgaggcgttg aaagtggcga accatcgcct cacgcgtacc gaaatcaatc
     1861 caacggcgag cttcagctat gcgaaatgca gctagattcc tgatcccgat cttgggtgtg
     1921 gcagcgcttg ccgcctgcca caagcagcac cagaaccagg tggcgagtca ggatatgtcg
     1981 atcgaggaca atctttcgga caacggcacc gattccaacg cgtccatcga gacactcccg
     2041 cctgatgaga gcagcacgac atcgaatggc gaactcaatc agggcgaaga caatcccgac
     2101 gtcaatgacg tcggcaatgg tgactgatcg gaaaggcaag ggggtatgaa gctctattat
     2161 tcaccgggtg catgctctca ggcaccacac atacttcttc acgagatagg cttggatcat
     2221 gacgtcgcgc gcgtcgatct caaggccaag aaactcgccg acggcggtga ttatctgaag
     2281 atcaacccga aaggatcggt gccggcactg gagctcgaca gtggcgaggt actgaccgaa
     2341 aatgccgtta tcctgcaata tcttggcgat cgaacgaact ggcccgaagt atttccgccg
     2401 ctgggcgatt ttcgccgcta tcgcgtgctt gaaatgctga actacatcac gaccgaactt
     2461 cacaagcgct tcggcctatt gttcaacccg cgaacgctcg acgaaaccaa agctcttgtg
     2521 attgaagagc ttggccgcaa gcttgatttc gtcgaacagc gcctcggtga tggaccattt
     2581 ctgtttggcg acaccatcac cctgcccgat ccgtatctgt tcgtcatcac cgggtgggcg
     2641 gagaaaatgc tcggtggtct caatcgctgg ccaaatctcg ccgcatttcg acggcgcatg
     2701 ctcgaacgca gttcagtccg aaacgtgctt aggctcgagg gattgcttga ggaggaagcg
     2761 gcgggctaga gcgcccacgc aatgagccaa ttcgacctga ccgaggacca gctccagatc
     2821 caggagatgg cccgcaaatt caccgccgac gcgattactc cctttgcggc agaatgggac
     2881 gagaaacacg tctttcccaa ggacacgatc cgtgaagcag cgcagctcgg attcggatcg
     2941 atctatgtca gtgaagagag cggcgggatc ggtcttggac gcctcgatgc cgcattgatt
     3001 ttcgaggcgc tcgcctatgg ctgcccgtcg accagcgcat tcatttcgat tcacaacatg
     3061 gcgagctgga tgatcgaccg gttcgggtcg gccgaagtca agcagaaata tctcccttca
     3121 atgatcaaca tggagcggat gggcagttat tgcctgacgg agccgtcctc gggttctgac
     3181 gccgccgcgc tcaagactcg agctctgcgg gacggcgatc attatgtggt ctccgggtcc
     3241 aaggcattca tttccggagg cggtgagaac gacatttacg tcagcatggt acgcaccggc
     3301 gaagaggggc caaaaggcat cacctgtctc gttattgaaa aagacatgcc cggcgtgagt
     3361 ttcggcgctc aggagcgaaa gctcggctgg cattcgcaac cgacggctca agtcaatttc
     3421 gatgaagtac gtgttccggt tgtgaaccgc gtcggcgctg aaggggaagg tttccggatt
     3481 gcgatgatgg ggctcgatgg cgggaggctc aatatcggcg cctgctcgct cggcggcgcg
     3541 cagcgctgcc tcgatgagac cgttcgctat accaaggaac gccagcagtt cggccatccc
     3601 attgcggatt tccaggcaac gcagttcacg cttgccgaca tggagacgga actcgaggcc
     3661 gcgcgctatc tgttgtacgt ggcggctgca aaggtcacgg caaatgcggc cgacaagact
     3721 cgcttcgctg cgatggccaa gaggcttgca accgataccg gctcatccgt cgttgatcgc
     3781 gcgctgcaac tgcacggcgg ttacggatat ttgatggact atccgatcga acgtttctgg
     3841 cgcgaccttc gcgtgcactc gatcctcgag gggaccaacc agatcatgcg ggtgatcgtc
     3901 agccgcgaca tgctgcgcca gtgagtgacg ttctgattgc gacccaggag cgggtcggcc
     3961 gaattcgcct caatcgtccc aaggcgatcc atgcgctgac gaaacagatg tgcgaagtca
     4021 tgagcgaggc acttctacaa tggctgcacg atgatgacgt cgaggccgtt gtcatagacc
     4081 acgccgaagg tcgcggcttc tgcgccggtg gtgatgtcgt gatgctcgca agaagcggca
     4141 acgaggatgc ctcggatgcc aaggcgtttt tctttgctga atatcgcctc aaccatttat
     4201 tgttcactta tcccaagcca accgtcgcca tcatggacgg aatcacgatg gggggcggcg
     4261 tcggaatttc gcttccgtgc aatttccgaa ttgcgaccga aaacacgcgc ttcgccatgc
     4321 ctgaaaccgg cattggattg ttcccggacg ttggcggagg ctggtatctt ccgcgtcttc
     4381 cggggcgcgt cggggaattc atcgcgctca ccggagcgcg ccttgatggc gccgaatgtt
     4441 gctatcttgg ccttgccact cattac
//
LOCUS       DASRBJ010000287         8404 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_496828,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000287 DASRBJ010000000
VERSION     DASRBJ010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8404
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496828"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VE968_07895"
     CDS             <1..209
                     /locus_tag="VE968_07895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51781.1"
                     /translation="ERINYLMLMMLDPHVHFHVIPRYSEPRTWNGVEFVDEGWPGPPR
                     LETATKLNPEQRQRMATDVAALFG"
     gene            291..1001
                     /locus_tag="VE968_07900"
     CDS             291..1001
                     /locus_tag="VE968_07900"
                     /inference="COORDINATES: protein motif:HMM:NF024934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HZU51782.1"
                     /translation="MTSRRTRSQGESVSLRETLVSAGLEPSLADLLERMPHRVIQIDP
                     RRPFRESGAPREEVIFVRSGILSKFKSDSSGRRQIVALRFPGEGILPRSRPAQDGIQA
                     VVRSEIMVGKAKDFEALVDANPPMQRFFMRLLQRSESIGYEWLVNCGRRDSTARVAHL
                     LCETAVRMRSDEERMVNPFTQQQIADITGQTSVNVNRVLADMERQGLIKRRGREIEFV
                     DWPEMRRVASFQPAYLEI"
     gene            complement(1053..1127)
                     /locus_tag="VE968_07905"
     tRNA            complement(1053..1127)
                     /locus_tag="VE968_07905"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1093..1095),aa:Val,seq:cac)
     gene            complement(1177..1449)
                     /locus_tag="VE968_07910"
     CDS             complement(1177..1449)
                     /locus_tag="VE968_07910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HZU51783.1"
                     /translation="MNKQELIGHVADRSGLSRNDATRAVETMLEIITSTLKRGDEVRL
                     VGFGNFSVTRRKASTGRNPRTGEPMQIKAVSQPKFRPGKVLKDAVQ"
     gene            complement(1533..3932)
                     /gene="lon"
                     /locus_tag="VE968_07915"
     CDS             complement(1533..3932)
                     /gene="lon"
                     /locus_tag="VE968_07915"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HZU51784.1"
                     /translation="MTRFLPILPLRDIVVFPHRIVPLFVGREKSVAALEAAMAADKEL
                     FLVAQLDPGEDEPDRDALYDLGVVATAMQLLKLPDGTVRVLVEGVKRARLVNLVSRDG
                     YTAAEIEFVEEEAGGGTEAQALMRSVLDQFENYAKLNKRLPPETGIQLSEIEDPSTLA
                     DAVASNLSIKVADKQALLGELNPARRLEMVFAFMEGELGVLQVEKKIRSRVKRQMEKT
                     QREYYLNEQLKAIQRELGNEGEEGGDELQELAEKIRKTRLSKEARTRANAELKKLRAM
                     APMSAEATVARNYLDVLLGLPWGKKSKLKKNIAEAQAVLDQDHYGLEKVKDRIVEYLA
                     VQARTNKLKGPILCLVGPPGVGKTSLGRSIARATGREFVRQSLGGVRDEAEIRGHRRT
                     YIGSLPGKIISNIKKAGTSNPLFLLDEIDKLGQDFRGDPSSALLEVLDPEQNNKFQDH
                     YLELDYDLSDVMFVTTANSLDMPQPLLDRMEIIRLEGYTEDEKVEIAKRHLIPKQMDA
                     HGLKEEELSFSDDALRTIIRHYTREAGVRTLERELAKVARKSLRQILENKTEKVELTP
                     GNVGDFLGVRKFRYGIGEEEDQIGAVTGLAWTEVGGELLTIEAVTVPGKGQIKTTGKL
                     GEVMQESIQAAMSFVKARAPAFGVKPSIFARKDIHVHLPEGAVPKDGPSAGIGMVTAM
                     ISTITGVAVRRDVAMTGEVTLRGRVLPIGGLKEKLLAALRGGITTVLIPAENEKDLAE
                     LPQTVKDGLEIIPVDHVDEVLARALVEPLQPIEWTDDDEHAAEPPVHAATTETGATVR
                     H"
     gene            4024..4236
                     /locus_tag="VE968_07920"
     CDS             4024..4236
                     /locus_tag="VE968_07920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51785.1"
                     /translation="MVQEREKISNGPNDRPVNENIAGTGPGLPDEALAPGEELPSPPT
                     DDEIAKAAQKLGAPVGERDTLPLEGE"
     gene            4300..5742
                     /locus_tag="VE968_07925"
     CDS             4300..5742
                     /locus_tag="VE968_07925"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HZU51786.1"
                     /translation="MTKRHFLIALSTLTVSATAYAQFAVPPAPAPTMPAAVPPRAPTM
                     PPPAVEEPWMAHAPPQAQSWQSPAAEQGKSPALEPIDLPPAIEQGVDMIYIDEALVPK
                     AVHDDAPAGNMTFAAWSGAPVDFFTSVNPIYTELRRGLVKYQQRWGDLPQDPVPEGPA
                     LKIGMSGDRVAALRERLGLPAGDKYDAALAAQVKAFQSVHAIKPDGVAGPGTIEALNR
                     GAQYYEQIILINLERARRLPAPEEQPKYLLVDAGDARLSMWLNGRKVDEMKVVVGKAE
                     TATPMMAAYIRYADVNPYWNVPPELVRSLIGPRVVAQGVKYLTDREYQVLTDYSDNAQ
                     LIDPHSVDWQAVVDGTQEVRLRRLPSPANSMGMMKFMLPNYFGIYLHDSPEKEHFTKN
                     ELWISNGCVRLEDYKRVARFLFDGIVPQGKNPKVEEHANLPEPVPVYMTYLTAQPTAD
                     GIQFMPDHYGRDAHLMERFGSQLMAAVKGL"
     gene            complement(5788..7056)
                     /gene="clpX"
                     /locus_tag="VE968_07930"
     CDS             complement(5788..7056)
                     /gene="clpX"
                     /locus_tag="VE968_07930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HZU51787.1"
                     /translation="MTKLSGGDSKSTLYCSFCGKSQHEVRKLIAGPTVFICDECVELC
                     NDIIREESKSALVKTRDGVPTPLEICKVLDDYVIGQDRAKRVLSVAVHNHYKRLSHGA
                     KAGNDVELAKSNILLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVEN
                     IILKLLQASDYNVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLMEGT
                     TASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISDRMQGKSMGFGAHVAAP
                     DERKTGEILKHCEPEDLLKFGLIPEFVGRLPVIATLEDLDEVALVKILVEPKNALVKQ
                     YAKLFDMEEVQLEFTDDALHSVAKRAIDRKTGARGLRSILEGILLDTMFDLPSMDGVD
                     EVHVDKDVVEGRKEPVRVYAAKGSKADDAA"
     gene            complement(7224..7967)
                     /locus_tag="VE968_07935"
     CDS             complement(7224..7967)
                     /locus_tag="VE968_07935"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HZU51788.1"
                     /translation="MFDFQSDLIFPVHAVPEPGPLPPNAERLSLSTSDGAKLAGVLIR
                     AEQPNREKSLILGFGGNAWNGQDVAEYLHELYPDHDVVAFHYRGYRPSTGSPSGAALV
                     ADAPLVYDAAVKRLEPTRVIAVGFSIGTGIAAQLVRVRDIDGLILVTPFDSLKAVAQS
                     MMPWLPIAPFFNHEIDAAGPLSETDVPVAIVAAENDELVRPERTDALRHEVRNLVFDR
                     VIRRAGHNDIYTRSEFHDAMREALTRLKA"
     gene            complement(8018..8374)
                     /locus_tag="VE968_07940"
     CDS             complement(8018..8374)
                     /locus_tag="VE968_07940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZU51789.1"
                     /translation="MSEQRSILIVEDEPLIAMMLEDFLDSLGHTVRGTCDSVQCALDE
                     VEKGGFDLAILDVNLKGENVWPVATKLRERNVPFVIATGGYVDPPPPEFNNAPVIEKP
                     YTVDRVTPAIEAAFAA"
BASE COUNT         1678 a         2549 c         2441 g         1736 t
ORIGIN      
        1 ttgaacgcat caactatctc atgttgatga tgctcgaccc gcacgtccat ttccatgtca
       61 ttccgcgcta cagcgagcca cggacttgga atggcgtcga attcgttgac gaaggctggc
      121 cagggccgcc gcgcctcgag acagcgacaa agctcaatcc tgagcaacgt cagcggatgg
      181 cgaccgatgt cgcagccctc tttggctaat cagtcacata gatcctatcc ataagtaact
      241 tgcttgtgcc gttacgcagg cgcatcgtct cgcccaagga aagacccgcc atgacgagtc
      301 gccgaacacg gtcgcagggc gaaagcgtgt ctctacgcga gacgttagtc tccgcgggcc
      361 ttgagccatc gctcgccgac ctcctcgaac gcatgccaca ccgcgtcatc cagattgatc
      421 cgaggcgtcc gttccgcgag tccggagcac cgcgcgagga agtcatcttc gtccgatctg
      481 gaatcctttc gaaattcaag agcgactctt cgggtcgtcg acagatcgtt gcgttgcgct
      541 ttcctggtga aggtatcttg ccgcgcagca gaccggcaca ggacggaatt caagccgtgg
      601 ttcgaagcga gataatggtc gggaaagcga aggacttcga ggcgctggtc gatgcaaatc
      661 cgccaatgca acgcttcttc atgcggcttt tgcagcgcag cgagtccatt ggctacgaat
      721 ggctggtcaa ttgcggacga cgagactcga ccgcacgcgt tgctcacctg ctgtgcgaaa
      781 cggcagtacg gatgcgaagc gacgaagagc gaatggtcaa tccgttcacc cagcagcaaa
      841 tcgccgacat caccggtcag acgtcggtca acgtgaaccg ggtgttagcc gacatggaac
      901 gtcaaggtct tatcaagcgc cgcggccgcg agatcgagtt cgtggactgg cctgaaatgc
      961 gccgcgtcgc gagcttccag cccgcgtatc tcgagatctg agcgcactct accgaagatc
     1021 attgtctcgc cgcgcacgtc acgcgatggc aatggtgggc gcggtagggt ttgaacctac
     1081 gaccccaccc gtgtgaaggg tgtgctctac cactgagcta cgcgcccgcc ggtgcggaag
     1141 cgctcgcgat ataatgcacc gtttacgcct gtctagctac tgaactgcgt ccttcagaac
     1201 cttgcccggc cggaacttcg gctgcgaaac cgccttgatc tgcatcggct ccccagttcg
     1261 aggatttcga ccggtcgatg cctttcggcg cgtcaccgag aaatttccga acccgacgag
     1321 acgaacctcg tcacctctct tgagggtcga ggtgattatc tcgagcatcg tttcaacggc
     1381 gcgcgtcgcg tcattgcgac tcaacccgga gcggtccgcg acatgaccaa tcagttcttg
     1441 cttgttcatc ccccaggctc tcccctctcc gccgacgaga ctcgtggccg cggagttggc
     1501 ctttaaggca agactccgcg ctcctgtcca gcctagtgac gaactgttgc gcctgtttcc
     1561 gtcgtagccg catgcaccgg tggctcggcg gcatgctcgt cgtcgtcggt ccactcgatc
     1621 ggctgcaacg gctcgaccag cgcacgggca agaacctcgt cgacatggtc gacgggaatg
     1681 atctcgaggc cgtcctttac ggtctgcggg agctcggcaa gatccttctc gttctcggcg
     1741 ggaatcagca cggtcgtgat tcctccccga agtgctgcca ggagcttctc cttgaggccg
     1801 ccaatcggaa ggacgcgacc gcgaagcgta acctcgcccg tcattgcaac gtcacggcga
     1861 accgcaacgc cggtgatcgt ggagatcatt gccgtcacca tcccgatacc ggcggacgga
     1921 ccgtccttgg gcacggcacc ttccggaagg tgaacgtgga tgtccttgcg ggcaaaaatg
     1981 gaaggcttca ctccaaaagc cggcgcgcgc gctttgacga agctcatcgc tgcctggatg
     2041 gattcctgca tgacttcgcc gagctttcca gtggtcttga tctggccctt gcccggaacg
     2101 gtcactgctt cgatcgtaag cagctcgccg ccgacttcgg tccacgcgag cccggtgacg
     2161 gcgccaatct ggtcctcttc ctcgccaatt ccgtagcgga atttccgaac tccgaggaaa
     2221 tcacccacgt tacctggagt tagctcgacc ttctcagtct tgttctcaag gatttgacgc
     2281 agcgacttac gtgcgacctt ggcaagttcg cgctcaagag tgcggacgcc cgcctcgcgc
     2341 gtgtagtgcc ggatgatcgt tcgcaaggca tcgtctgaaa aggacagttc ctcttccttg
     2401 aggccgtgcg cgtccatctg cttgggaatg aggtgccgct tggcgatctc caccttttca
     2461 tcctcggtgt aaccttcgag gcggatgatc tccattcgat cgagcagcgg ttgcggcatg
     2521 tcgagcgaat ttgcggtcgt gacgaacatc acgtccgaaa gatcatagtc gagttcgaga
     2581 taatggtcct ggaacttgtt gttctgctcc gggtcaagca cctcgagcag ggccgatgac
     2641 ggatcaccgc ggaaatcctg tccgagcttg tcgatttcat cgagcaggaa cagcgggttg
     2701 gaggttccag ctttcttgat gttggagatg atctttccag gcaacgagcc gatgtaggtt
     2761 cgtcgatggc cgcgaatttc ggcctcgtcg cgcactccgc cgagcgattg tcgcacaaac
     2821 tctcggccgg ttgcccgggc gatcgagcgg cccagcgacg tcttgccgac acccggagga
     2881 ccaaccaggc acaatatggg acccttgagc ttgttcgtcc gggcctggac ggcaagatac
     2941 tcgacgatcc ggtccttgac cttctcgaga ccataatggt cctggtcgag aacagcctgt
     3001 gcctcggcaa tattcttctt aagcttggat ttcttacccc agggaagacc cagaagaacg
     3061 tcgagataat tgcgcgcgac cgtcgcttcc gccgacatcg gcgccattgc ccgcaacttc
     3121 ttcaactcgg cattggcgcg cgtacgtgct tctttcgaaa ggcgcgtctt tcggatcttc
     3181 tcggcaagct cctggagctc gtcgccacct tcctcgcctt cgtttccgag ctctcgctgg
     3241 atcgccttca gctgttcgtt gaggtaatat tcccgctgag tcttctccat ctggcgcttg
     3301 acgcgactgc ggatcttctt ttcgacctgg agaacgccaa gttcgccctc catgaaggcg
     3361 aacaccatct cgagacgtcg cgccggattg agctcgccga gcagtgcctg cttgtcggcc
     3421 accttgatcg agaggttcga cgcgaccgcg tcggcgaggg tcgatggatc ctcgatttcg
     3481 gagagctgga tgcccgtttc gggaggaagg cgcttgttga gcttggcgta attttcgaac
     3541 tgatcgagaa ccgagcgcat caacgcctgc gcttcagtgc cgccgccggc ctcttcctcg
     3601 acgaactcga tctccgcggc tgtatagccg tcgcgcgaga cgagatttac aagtcgcgcc
     3661 cgcttcacgc cttcgaccag cactcgtacg gttccgtcgg gaagcttcag tagctgcatt
     3721 gccgtcgcga cgactccgag gtcgtaaaga gcatcgcggt cgggctcatc ctcaccggga
     3781 tcaagttggg cgacaaggaa caactccttg tccgcagcca tcgctgcttc gagcgccgct
     3841 acggactttt cgcggccgac gaagagcggc acgatccggt gcgggaaaac gacgatgtcg
     3901 cgaagtggaa ggattggtag gaagcgagtc atggacggta tatgggcggc caccagcgcc
     3961 cacgcaacaa aggcgggaac attgacgctt acccggtcgc tttagcgacg gaggaaatca
     4021 ttcatggttc aggagcgcga aaaaatcagc aatggtccca acgatcgacc cgtcaatgaa
     4081 aatatcgccg gcaccggacc aggattgccg gatgaagcgc ttgctcccgg cgaggaactt
     4141 ccctccccgc caacagatga cgagatcgca aaggcagcgc aaaagcttgg tgctcccgtc
     4201 ggtgaacgcg acactcttcc gctagagggt gagtaattcg cgaccgaagc cttcgattga
     4261 ttctgtaatc gttcagtttg gttgcttaag cttaaggtcg tgaccaaacg ccatttcctc
     4321 atcgcgctaa gcacgctcac cgtctcggcg acggcctacg cccagtttgc cgtaccgcct
     4381 gccccagccc cgacgatgcc cgctgccgtg ccgccgcgcg caccgaccat gccgccgccc
     4441 gcggttgaag aaccctggat ggcgcacgcg ccgccgcagg cgcagtcgtg gcaatcgccg
     4501 gccgcggagc aaggcaagtc gccggctctc gagcccatcg atctgccgcc ggccatcgag
     4561 cagggcgtcg acatgatcta tatcgacgag gcgctcgtcc caaaagctgt tcacgatgat
     4621 gcgccagcag gcaacatgac gtttgcggcc tggagcggtg ctcccgtcga ttttttcacc
     4681 tcggtcaacc caatctatac cgaacttcgg cgtgggctcg tcaaatatca gcagcggtgg
     4741 ggcgatcttc cgcaagatcc ggttcctgaa ggtcccgcgc tcaagatcgg aatgagcggc
     4801 gatcgcgttg ctgcgttgcg ggaacgtctg gggcttcctg ccggcgacaa atatgacgcg
     4861 gccctcgccg ctcaggtgaa ggcatttcag tcggttcacg cgatcaagcc cgatggtgtc
     4921 gccggccccg gcacgatcga ggcattgaac cgcggcgctc aatattatga gcagatcatt
     4981 ctcatcaacc tcgagcgagc ccgccgtctg ccggctcccg aagagcaacc gaaatatctg
     5041 ttagtcgacg ccggcgacgc acgcctttcg atgtggctga atggccgaaa ggtcgacgaa
     5101 atgaaggtcg tcgtgggcaa ggccgaaacg gcgacgccaa tgatggccgc ctacatccga
     5161 tatgcggacg tgaaccccta ttggaacgtc ccacctgagc tggtccgaag cctcatcggg
     5221 ccgcgcgtgg tcgcccaggg cgtcaagtac ctcaccgacc gcgaatatca ggtcctcacc
     5281 gactacagcg acaatgccca gctgattgat ccgcattcgg ttgattggca ggcggtcgtc
     5341 gacggtacgc aggaagtgcg gcttcgccgg ctcccgagcc cggccaattc gatgggcatg
     5401 atgaagttca tgctcccgaa ctatttcggg atttacctgc acgattcacc cgagaaggag
     5461 catttcacca agaacgagct gtggatcagc aacggatgcg tccggctgga ggactataag
     5521 cgggttgccc gattcctgtt cgatgggatc gtaccgcaag ggaagaatcc caaggtcgag
     5581 gaacatgcga accttcccga acccgtcccc gtctacatga cctatctgac ggcacagccg
     5641 acggccgatg gaatccagtt catgccggac cattatggcc gcgacgccca cctcatggag
     5701 cggttcgggt ctcagctcat ggctgcggtg aagggcctct aggctctccc gacactagga
     5761 tttgatgatc ggcgggagag tccgccgtca cgcggcgtcg tccgccttgc ttcccttggc
     5821 ggcatagacg cgcactggct ccttgcggcc ttccacgacg tccttgtcga cgtggacttc
     5881 atcaacgccg tccatcgacg gcaggtcgaa catggtgtcg agaagaattc cctcgaggat
     5941 cgagcgaagc ccgcgcgcgc cggtcttgcg atcgatcgct ctcttggcga ccgagtgaag
     6001 cgcgtcatcc gtgaactcga gctgcacttc ttccatgtcg aagagcttgg cgtactgctt
     6061 caccagtgcg ttcttcggct cgacgaggat ctttacgaga gcaacttcgt cgaggtcctc
     6121 gagcgtcgca ataacaggca gtcgtccgac gaactcggga atgagtccga acttcagcag
     6181 gtcttcgggc tcgcaatgct tcaggatctc gcctgtcttg cgctcgtccg gggcagccac
     6241 atgcgcacca aagcccatcg actttccctg catccggtcg gagatgatct tctcgaggcc
     6301 ggcgaaagcc ccaccgcaga tgaacagaat gttggtcgta tcgacctgaa ggaactcctg
     6361 ctgtggatgc tttcggccac cctgcggagg taccgaggca gtcgtgcctt ccatgagctt
     6421 cagaagtgcc tgctgcacgc cctcgcctga gacgtcgcgc gtgatcgacg gattatccga
     6481 cttgcggctg atcttgtcga tctcgtcgat gtagacgatt ccgcgctgtg ccttctcaac
     6541 attgtaatcg gaggcctgga gaagcttcag aatgatgttt tcgacatctt cgccgacgta
     6601 acccgcttcg gtgagggtgg tcgcgtcggc catcgtgaag ggaacatcga ggattcgcgc
     6661 aagcgtctgc gcgaggagag tcttgccaca gcccgtcggt ccaatgagca ggatgttcga
     6721 cttggcgagc tcaacatcgt tgccggcctt cgcgccgtgc gaaagcctct tataatggtt
     6781 gtggacggcg acggagagga cgcgcttcgc gcgatcctgg ccaatgacat agtcgtcgag
     6841 gaccttgcag atttccaacg gagtcgggac gccgtcccga gtcttgacta gagccgactt
     6901 cgactcttcg cgtatgatgt cattgcacag ctcgacgcat tcatcacaaa tgaacacagt
     6961 cggtccagcg atcagcttcc tcacctcgtg ctgcgacttg ccgcagaacg agcagtagag
     7021 agtactcttg ctgtcgccgc ctgaaagctt ggtcattccc gtccttatat cccggccgcg
     7081 aacgaccgct tatccttggg catgctagcc cgctttatga cacaatcaac tctgcgagtg
     7141 ggttaacgta tccctcgccc gcgattgctc gtttataatc aagaatatgg attgacccgc
     7201 aagcactcgc aagagggctg ctgtcacgct ttgagacggg tgagcgcctc gcgcatcgcg
     7261 tcgtgaaact cggagcgcgt atagatatca ttgtggcctg ctcgccggat tacgcgatcg
     7321 aaaacgagat ttcttacctc atgtcggagt gcgtcggttc gctctgggcg gacaagctcg
     7381 tcattttccg ccgcgacgat tgcgaccggc acatccgttt cactgagcgg accagccgca
     7441 tcgatttcgt ggttgaagaa cggcgcgatc ggcagccacg gcatcatcga ctgggcgaca
     7501 gccttcagcg aatcgaacgg agtgacaagg atgagaccat cgatgtcccg cactctcaca
     7561 agctgcgctg cgatcccggt tccaatgctg aatccgaccg caatcacgcg cgtcggctcg
     7621 aggcgcttca cggcagcatc gtagacgagc ggagcatcgg cgacgagagc cgctcctgat
     7681 ggcgacccag tcgagggacg gtacccgcga tagtgaaagg cgacgacgtc atggtcagga
     7741 tagagctcgt gcaagtattc ggcgacatcc tgtccattcc aggcatttcc accaaagccc
     7801 aggatgaggg atttctcccg attgggctgt tcggcgcgga tgagaacgcc cgcgagcttc
     7861 gcgccgtcgc tggttgaaag cgaaagccgc tcggcgttcg gtggcaatgg ccctggctcg
     7921 ggcacggcat gcactgggaa gatgaggtcg gactggaaat cgaacatgaa cggaactggt
     7981 gctttgctat gcctagcagt ttcggaagct tcgagaacta ggcagcgaat gcagcctcaa
     8041 tggcgggcgt gacgcggtcc accgtataag gcttctcgat cacgggtgcg ttgttgaatt
     8101 cgggaggtgg cggatcgacg taaccgccgg tcgcaatcac gaaaggaacg ttcctctcgc
     8161 gcaatttcgt cgcgacgggc cagacattct cacccttaag gttcacgtcg agaatagcga
     8221 gatcgaagcc gcccttttca acttcatcga gcgcacattg caccgaatcg caggttccgc
     8281 ggacggtgtg gccgagcgaa tcaagaaaat cctcaagcat catggcgatg agaggctcgt
     8341 cctcgacaat cagaatggaa cgctgctctg acatttaccc gctcgaataa agcgcactta
     8401 agaa
//
LOCUS       DASRBJ010000288         6440 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_706436,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000288 DASRBJ010000000
VERSION     DASRBJ010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6440
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_706436"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..302)
                     /locus_tag="VE968_07945"
     CDS             complement(<1..302)
                     /locus_tag="VE968_07945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51790.1"
                     /translation="MNQLRFGKHPAKSDYRTLRFQDFLLPDLPAPPPSFDALPRVFTG
                     TNNNDVATLFPMDGNDRYGDCTIAALAHAITVYNGYVGRKKILGSQKVVKLYFKLT"
     gene            675..1559
                     /locus_tag="VE968_07950"
     CDS             675..1559
                     /locus_tag="VE968_07950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51791.1"
                     /translation="MTEDELRHAQAKLDERVSALESSRGNDAGSSTKNWLPIVLPIAG
                     TVAVAIITAGTSWVASHAQTQETERAQQAQHEETLRTQIAASQQQSVDNGRQAATMYF
                     TNLADLRSKDKLSAGEKKRFARDLEIVAAISGNDDLKDIMTRAARDAAYSVRDERTQQ
                     SAAEGGATTLPSTAIQALPDLVAPKPAKAYAPTDFLAYPEVPASRWSTDVQGFRNTLS
                     AIGFATQIAEKIRPELAPQKNEVRYYKPEHRAVATLAAAQLSKSLHQRFTAKLLGGGA
                     TLPNGVMEFWLGTNPDPA"
     gene            1708..2916
                     /locus_tag="VE968_07955"
     CDS             1708..2916
                     /locus_tag="VE968_07955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2235 domain-containing protein"
                     /protein_id="HZU51792.1"
                     /translation="MPKNIVICCDGTGNQINDHLSNVLKLYRVLQKTDDQRVYYSPGV
                     GTVGDYDSWQVVKQHVREFLGLATGYGLDENVLDAYRFLCTNYEEGDAIFLFGFSRGA
                     YTVRVLAAFVYVIGLLKPDQLNLADYAFTAYKKASHDSRKRLAIDDEEALREAASDTE
                     IARGLPAAWEFRRVAGSRAVTIKFIGVWDTVASVIVPRADRLLLDLQTLRFTRTDPGV
                     EIFRQAIAIDERRRMFRLDPWRQPQTFKSNPFNNKNWRPQDIRQVWFAGVHADIGGGY
                     AESESGLSKFPLLWMINQAKLAGLKMSTSMINHLVLGKPRRDSARVYVAPDAAAKLHR
                     SLTIAWWLLEIIPKLKKFREWPQRWSLFGLYLPLGEPRLIPEGALVHPSVLERMREVP
                     AYRPVNLPTK"
     gene            3037..3960
                     /locus_tag="VE968_07960"
     CDS             3037..3960
                     /locus_tag="VE968_07960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017183295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEPN domain-containing protein"
                     /protein_id="HZU51793.1"
                     /translation="MRSDIDHLPLGKQRELQRVVQILFEEFEEARALSTQEWKKKGRI
                     VKIILYGSYARGTFVDEPHTAKGYQSDYDLLVIVNDSRLTDRVDYWSKAEERLNRELS
                     ITRTLKTPVNFIVHTLHEVNDGLAHGRFFFIYVQRDGIALYQSDDSELAEPRPKTPTQ
                     AAALAKEYFEEWYPTGAEFFENYGFSLARGRRNNAAFQLHQAAERLYHCVLLVVTFYT
                     PHVHNLGFLRTQAERLDRRLAYVWPKDSHRERAMFEKLKDAYVKARYSKHYRISEEEL
                     EWLGAHVEELGRVVQDVCLERIQMLERSAAA"
     gene            complement(3992..5428)
                     /locus_tag="VE968_07965"
     CDS             complement(3992..5428)
                     /locus_tag="VE968_07965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018075957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HZU51794.1"
                     /translation="MKRHVLMLGALSLGACNLAPPYQRPATVPIPPSFKEAPGWIVGK
                     PNDAAARGEWWTLFNDPVLNALESKVVVTNQNVAAARAAYEAARALVIVQRSALFPTV
                     TASLNASHSGHFLPTNSNARSSGNGSTSTNGSNNTGATGSNFALAIGATWEPDLWGKL
                     GNAVTQARANAQASAGDLENATLSARGELATDYVQLRGVDAQRVLLDATIKDYQESLR
                     ITINKYNAGTVAHSDVYQAETSLDNAIASREDLDRQRAVLEHAIAMLAGENPSTFAIS
                     QTSWEPVVPQVPGIVPSTLLERRPDIAAAERRVAAANANIGIQRAAYFPQISLSGNAE
                     TGGTSIGQLFSAATSVWSLGLSGLMTLLDFGARRGQVLQARAQYEEAVATYRQTVLTA
                     FQQVEDNLAATRVLAGVTVEQAAAATAATRAETIANNQYLGGIIDYSEVVVARNAALS
                     ARQTEIQGIVNEQTAVIALMQGIGGSWE"
     gene            complement(5425..6210)
                     /locus_tag="VE968_07970"
     CDS             complement(5425..6210)
                     /locus_tag="VE968_07970"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HZU51795.1"
                     /translation="MTPLSALSHWSTGSTNASVSHSEGEPSATISFNLPPGGTLGKAA
                     QTIEQVRASIGLPATVHGEFGGTARVFAQSTSSMPLLILGALLAIYIVLGILYESAIH
                     PLTALSTLPSAGVGAMIALIATGGEFDIIALIGIILLIGIVKKNAILIIDFALDAERG
                     RGLEPLAAVREASLLRFRPILMTTLAAALGALPLAIGFGDGAELRRPLGIAIFGGLIA
                     SQILTLLTTPVVYLALDRFRHRSADERALVRHRDEPDGLGAPA"
     gene            6209..>6440
                     /locus_tag="VE968_07975"
     CDS             6209..>6440
                     /locus_tag="VE968_07975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51796.1"
                     /translation="MVRALVLTAAPLAIDEPPAPVPLELGVAATEGVACAEAVVGLVP
                     IAPADAALTAVCALLVAGDGVCVDDCELAPVEV"
BASE COUNT         1333 a         1872 c         1966 g         1269 t
ORIGIN      
        1 ttggtcagct tgaaatagag cttcacgacc ttttgcgagc cgaggatctt cttgcggcca
       61 acatagccgt tgtagacggt gatcgcatgc gcaagcgcgg caatggtgca gtcgccatag
      121 cgatcattgc cgtccatcgg aaacaaggtt gcaacgtcgt tgttgttggt tccggtgaag
      181 acacgcggca aggcatcgaa ggacggtgga ggagcgggaa ggtcgggtag caggaagtcc
      241 tgaaatcgaa gcgttcgata atccgatttg gcggggtgtt ttccaaagcg aagctgattc
      301 atgatcctct ccttgagtaa tgttggatgt gaggcgcgcg gcgatgagcg gcggtgctga
      361 tttccgcttt tgacgcggca catggcaaag tgcttgcact cttcgccccg ctggcggtgt
      421 gctgggcacg gcggctgcct gcttgggtaa gcagcagtga agggcggagg tcggtcgccg
      481 aaatttcgaa ttgcccgaac ggcatctcat ccctccggga gagcctccga gcggagcgat
      541 ttaataaact actgggaatc gaaacgccag ctgccgtggt cgcttcgagg ggccactagt
      601 gctgcaaaat tgccggtcac ggacgtttag cgtataggag gattgctcgg tgggactgcc
      661 tatggaggca tccaatgacc gaagacgaac ttcgccacgc gcaggcaaag ctcgacgagc
      721 gggtttccgc gctcgaaagt tcccgtggca atgatgctgg ctcaagcacg aagaactggc
      781 tgccgatcgt tttgccaatc gctggtactg ttgcggtcgc tatcatcacg gcgggaacga
      841 gctgggtcgc aagccatgcg caaacgcagg aaaccgagcg cgcgcagcaa gcgcagcacg
      901 aggaaacact tcgaacacag attgccgctt cgcaacagca atcggtcgac aatggccgac
      961 aggccgcaac catgtatttc acaaaccttg ccgacttgcg cagcaaggac aaattgtccg
     1021 ccggcgaaaa gaagcgcttt gcacgcgatc ttgaaattgt cgcggcgatc agcggtaacg
     1081 atgatctcaa agacatcatg acccgagccg cgcgtgatgc agcctacagc gttcgcgatg
     1141 aacgcacgca gcagagtgcc gccgagggag gagcgacaac gctcccgagc accgcaatcc
     1201 aggcgcttcc ggaccttgtc gcacccaagc ccgcaaaagc ctacgcgccg acggatttcc
     1261 tggcttatcc agaagtacct gcgagccggt ggagcacgga cgtgcagggc tttcgaaaca
     1321 cgcttagcgc gatcggcttc gcgacgcaga tcgccgagaa gatccggccg gaactcgcgc
     1381 cgcaaaagaa cgaagttcgt tattacaagc cggagcatcg cgcggtcgcg acgcttgcag
     1441 ccgcacagct cagcaagtca ctgcaccaga ggttcacggc gaagctactt ggtgggggtg
     1501 caacgcttcc gaacggcgtg atggagttct ggcttggaac gaacccggat ccagcgtgat
     1561 ttgatcgaga ccgacgagcg tacacaacca ctgacgctgc gatgatgatg cgatctccag
     1621 cggatccggg ctgcgaaagc ttgccacgtt gtgatgggca aatcatctgc tattcacgtc
     1681 gagccggatc actgaaggac acggcgaatg ccgaagaaca tcgtgatctg ttgcgatggc
     1741 acgggcaacc agatcaatga ccacctgtcg aatgttctga agctatatcg cgttctgcag
     1801 aagaccgacg atcaacgggt ttattacagt cctggtgttg gcacggttgg cgattatgac
     1861 agctggcagg tcgttaagca gcatgttcgc gagtttctag ggctcgcgac gggttatggg
     1921 ctcgatgaga atgttctcga cgcctaccgc tttctttgca cgaactacga agagggcgat
     1981 gcaatcttcc tcttcggctt cagtcgcggc gcctacacgg tccgggttct cgccgcattc
     2041 gtctacgtca tcggccttct caaaccagac cagctgaacc tcgccgacta tgcgttcacg
     2101 gcttacaaaa aggcgagcca cgacagtcga aaacgcctcg cgatcgacga tgaggaggca
     2161 ctgcgtgaag ccgcgtcgga tacggagatc gcgaggggtc ttcccgccgc ctgggagttt
     2221 cgacgcgtgg ctggttcgcg ggccgtgaca atcaagttta tcggggtctg ggacactgtt
     2281 gcgtcggtca tcgtgccgcg cgccgatcgg ctcctccttg accttcaaac actccgtttc
     2341 acgcgcacgg atccgggcgt cgaaattttt cggcaggcga tcgcgatcga cgagcggcga
     2401 cggatgtttc ggctcgatcc atggcgccag ccacagacat tcaaaagcaa cccgttcaat
     2461 aacaagaatt ggcggccgca ggacatccgg caagtatggt tcgctggcgt gcatgccgac
     2521 attggcggcg gctatgcgga atcggaaagc ggcttgtcga agtttccgct gctctggatg
     2581 atcaaccagg cgaaattggc gggacttaag atgagcacct cgatgatcaa tcatcttgtg
     2641 ctcggaaagc cgagacgcga cagcgcccgc gtctatgtcg cgcccgatgc agcagcaaag
     2701 cttcaccgat cactgacaat cgcttggtgg ctgctcgaga tcattccaaa actgaagaag
     2761 tttcgcgagt ggccgcaacg atggtcgctc ttcggccttt acttgccgct tggtgagccg
     2821 aggctgatcc ccgagggagc gcttgtccat ccgtcggttc tcgagcggat gcgggaagtt
     2881 ccagcctatc gtccagtaaa tctcccgacg aagtgaatcg cccgcgtcga acgggctgat
     2941 gcttgcgctt ccaagcatcg gcttacgcta gcggatccga gctgcggcga ccggactctt
     3001 tgcgctgtgc acgtcagcgc ttaggatcgt tctgcgatgc gcagcgacat tgatcatctg
     3061 cctttgggaa agcagcgcga gctgcagcgg gtggtgcaga tattgttcga ggagttcgag
     3121 gaggcgcggg cgctttcaac ccaggagtgg aagaagaagg gacggatcgt aaagatcatc
     3181 ctttatggct cctatgcccg aggcaccttt gtcgacgagc cgcacaccgc caagggctac
     3241 cagtcggact atgacctcct cgtgatcgtc aacgattcac ggctgaccga ccgcgtcgat
     3301 tattggagca aggccgagga gcgcttgaac cgcgagcttt cgatcacaag gacattgaag
     3361 accccggtca acttcatcgt ccatacgctt cacgaagtga acgatggtct cgcccatggc
     3421 cggttcttct tcatctatgt gcaacgcgac ggcattgctc tttaccagag cgacgacagc
     3481 gaactcgccg aaccccggcc caagacaccg acccaggcgg cggcactcgc caaggaatat
     3541 ttcgaggagt ggtatccaac aggagcagag ttctttgaaa actatggctt cagtctcgcg
     3601 cggggcaggc gcaacaacgc agcctttcaa cttcatcaag ccgccgagcg cctctaccat
     3661 tgtgtccttc tggtcgtgac cttctacacc ccgcacgttc acaacctggg gttcctgcgc
     3721 acgcaggcgg aacgtcttga tcgtcgcctg gcttacgtgt ggcccaagga ctcccatcgc
     3781 gagcgtgcga tgttcgagaa gttgaaggac gcctatgtga aggcgcgcta ctccaagcac
     3841 taccgcatat cagaggaaga actggaatgg ctcggcgcgc acgtcgagga actcggccgc
     3901 gtcgtccagg atgtctgtct cgagcggatc caaatgctcg agcggagtgc tgcggcgtaa
     3961 atacttaagt ggggtccttg gacccgagca actactccca gctgccgccg ataccttgca
     4021 tgagtgcgat aaccgccgtc tgctcattga cgatgccttg gatctccgtc tgccgcgcac
     4081 tcaatgctgc attccttgcg acgaccacct cggaatagtc gatgataccg ccgagatact
     4141 gattgtttgc gatcgtctcc gcgcgcgtcg cggcggtcgc agccgccgct tgctcaaccg
     4201 tcacgccggc aagcacgcgt gtcgccgcga gattatcttc gacctgctga aaggcggtaa
     4261 gcacggtctg acggtacgtt gcgacggcct cttcgtattg tgctcttgcc tgaagcactt
     4321 gtccgcgccg ggcgccaaag tcgagcaaag tcatgagtcc actcaacccc agcgaccaaa
     4381 cacttgttgc agccgaaaaa agctgcccga tgctggttcc accggtttcg gcattccccg
     4441 acaacgagat ctgcgggaaa taggccgccc gctggattcc gatgttggca ttggcggctg
     4501 cgacgcgccg ctcggcagcg gcaatatcgg ggcgtcgctc gagtaacgtg gacgggacga
     4561 tgccgggaac ttgcggtacg accggttccc acgacgtctg cgaaatcgcg aacgtcgacg
     4621 gattttcacc ggcgagcatt gctatcgcat gttcaaggac cgctcgctga cgatcgagat
     4681 cttcgcggga agcgatcgca ttatcgagcg atgtttcggc ctggtaaacg tcggagtgag
     4741 caacggttcc agcgttgtac ttgttgatcg tgatcctcag cgattcctgg taatccttga
     4801 tggtcgcgtc gagcagcacg cgctgcgcat cgacgccgcg aagctgcacg taatcggtcg
     4861 caagctcacc gcgagcggag agggtcgcgt tctcaagatc gccagcactc gcttgggcat
     4921 tggcgcgcgc ctgcgtcact gcatttccga gcttccccca gaggtccggt tcccaggttg
     4981 cgccaatcgc cagcgcgaaa ttcgagcctg ttgcacccgt gttgttggag ccattcgtgc
     5041 tcgtcgaacc attccccgac gaacgggcat tgctgttcgt tggcaagaag tgccccgagt
     5101 gcgacgcatt gagcgatgcc gtgacggtcg ggaaaagtgc cgagcgctga acgatcacga
     5161 gcgcgcgcgc ggcctcatag gcggcgcgcg cagccgcaac attctggttg gtgacaacga
     5221 ccttgctctc gagcgcgttc aagacaggat cgttgaacaa ggtccaccat tccccacgtg
     5281 ccgcagcatc gttgggcttg ccgacgatcc agcccggcgc ttccttgaac gagggcggta
     5341 tcgggaccgt cgctggtcgt tgatagggcg gcgcgagatt gcacgcaccg agggacaagg
     5401 ccccaagcat tagaacgtgg cgcttcatgc aggagctcca agaccatcgg gttcatcgcg
     5461 gtgacgaacg agcgcgcgct catccgcact ccgatgccgg aaccgatcga gcgcgagata
     5521 aacgacgggg gtagttagaa gggtcaggat ctggctcgcg atcagccctc cgaagatcgc
     5581 aattccgagc ggacgccgca gctctgcacc gtcgccaaaa ccgattgcaa gcggcagcgc
     5641 acccaaggct gcagcaagag ttgtcatgag gattggccgg aaacgaagga gcgatgcttc
     5701 gcgtaccgca gcgaggggtt caagcccccg gccgcgctcc gcgtcgagtg caaagtcgat
     5761 gatcaagatg gcattcttct tgacgattcc aatcaggaga atgatcccga tcaacgcgat
     5821 tatatcgaac tcgccgccgg tcgcgatcag cgcgatcatt gctccaacac cggcggacgg
     5881 cagcgttgac agggcggtga gcggatggat cgcgctctcg tagagaatgc cgaggacgat
     5941 atagattgcg agcagtgcgc cgaggataag taacggcatg ctcgacgtcg actgcgcaaa
     6001 cactctcgcc gtgcctccaa attctccgtg caccgttgcc ggcaggccaa tactcgcgcg
     6061 gacctgctcg atggtctggg ctgcctttcc gagcgtgccg cccggcggaa gattgaatga
     6121 gatcgttgcc gagggctcgc cctcgctgtg gcttaccgac gcgttcgtcg atcctgtcga
     6181 ccagtgggaa agcgccgaca gcggagtcat ggttcgtgca ctcgtgctta cggcggcgcc
     6241 gcttgcaatc gacgagccgc cggcgccggt accgcttgaa ctcggtgttg ctgcaaccga
     6301 aggcgttgcc tgcgccgaag ccgtggtcgg acttgtgccg atcgcgcccg ctgacgcggc
     6361 actaaccgcc gtctgcgcgc tgcttgttgc gggcgatggc gtttgcgttg acgattgcga
     6421 gctcgcgccg gtggaagttg
//
LOCUS       DASRBJ010000289         5731 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_182643,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000289 DASRBJ010000000
VERSION     DASRBJ010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5731
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182643"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..606
                     /locus_tag="VE968_07980"
     CDS             <1..606
                     /locus_tag="VE968_07980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HZU51797.1"
                     /translation="VQKKASWVLKLAGLDIKLADAIIDGLRKLTVEMSTDPAHPVRLK
                     IEEALAQLANDLQTRVETRERVEAMKEQLLDNRSVSLWLDALWQKGREAVIRAARNPD
                     AVLAGRLGEVLKTMGSTLEKDLRIRKAINQFTRRAIVGMAASYGGSIVKLVSETVRGW
                     DARTVTNRLESAVGRDLQYIRINGTLVGGLVGLALHVVDSL"
     gene            603..1385
                     /locus_tag="VE968_07985"
     CDS             603..1385
                     /locus_tag="VE968_07985"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HZU51798.1"
                     /translation="MSDPRVDALAQSARNRGLKLVRSRVRTPGKPGFGKTGLVDASGK
                     NVFGMDSKGPAADPDTVEEFLRNLEAQDWGASLGGADPPNLSVKKKHPKADAPTATPS
                     AGQARARKRSTEQPRVPPRPQIRNAKAGDAARLAELIGELGHDIEVEQVRNNLALLGK
                     TKETPLVVTLDDIIVGMCGVARRVVISRPAPLGRITSLIVTKDTQGLGLGRMLVEAAE
                     SWMRDYGCKLVEVTSNDRRSEAHAFYRHMGYERTSIRFAKKL"
     gene            complement(1403..1954)
                     /locus_tag="VE968_07990"
     CDS             complement(1403..1954)
                     /locus_tag="VE968_07990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51799.1"
                     /translation="MSTSAIVIIVIAALVLIGLAITVMRRRQRERLKKRFGSEYDRQV
                     REAGGSEMKAQAELLKREKRVQKLDIHPLPPQERERFAADWQEVQARFVDDPERSIAL
                     ADALVAEVMKARGYPVDDFEQRAADISVDHPALVDNYRAAHEIAVRRAQGKADTEDLR
                     SALLGYRNIFDELLQSETPELAH"
     gene            2193..2269
                     /locus_tag="VE968_07995"
     tRNA            2193..2269
                     /locus_tag="VE968_07995"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2227..2229,aa:Arg,seq:tcg)
     gene            complement(2532..3602)
                     /locus_tag="VE968_08000"
     CDS             complement(2532..3602)
                     /locus_tag="VE968_08000"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013039135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HZU51800.1"
                     /translation="MAVNAKNWQELKKPNALEKRQSGGDSRRRAVFVAEPLERGFGMT
                     LGNSLRRVLLSSLQGAAVTSIRIDGVLHEFSSLAGVREDVTDIVLNVKQIALRMEGEG
                     PRRLHLSATGPAEVTAGMIATTGDIEVTNPELVICHLDDGATLNMELTADIGKGYQPA
                     AANRPADAPIGLIPVDALYSPVRQVAYKVENTRVGQELDYDKLTLTIETDGTVTPDDA
                     LAYAARILQDQLQLFVHFDESQVRMAPSPMIGQAVPMAAEAPTDTNQLNRYLLKKVDE
                     LELSVRSANCLKNDNIIYIGDLVQKTEAEMLRTPNFGRKSLNEIKEVLASMGLRLGMD
                     IPGWPPENIEEMAKKLEQEMLG"
     gene            complement(3697..4086)
                     /gene="rpsK"
                     /locus_tag="VE968_08005"
     CDS             complement(3697..4086)
                     /gene="rpsK"
                     /locus_tag="VE968_08005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HZU51801.1"
                     /translation="MAQAPQRLRRRERKNITAGVAHVNASFNNTMITITDAQGNAIAW
                     SSAGMMGFKGSRKSTPYAAQVAAEDAGRKAAEHGVRTLEVEVKGPGSGRESALRALQA
                     VGFQITSIRDVTPIPHNGVRPSKRRRV"
     gene            complement(4189..4557)
                     /gene="rpsM"
                     /locus_tag="VE968_08010"
     CDS             complement(4189..4557)
                     /gene="rpsM"
                     /locus_tag="VE968_08010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HZU51802.1"
                     /translation="MARIAGVNIPTNKRVEVALTYIHGIGRTTAKKITEQLGISPDRR
                     VQDLTDQEVLHIRETIDRDFTVEGDLRRETAMNIKRLMDLACYRGLRHRRGLPVRGQR
                     THTNARTRKGKAKPIAGKKK"
     gene            4739..5164
                     /locus_tag="VE968_08015"
     CDS             4739..5164
                     /locus_tag="VE968_08015"
                     /inference="COORDINATES: protein motif:HMM:NF021425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2127 domain-containing protein"
                     /protein_id="HZU51803.1"
                     /translation="MQEKRIHQVFVISIGAKGLHALIELAGGLALYFLGTETIAEWLR
                     PHEWAAHHFRPSEQHFYAFYLLSHGLVKGVLVYFLLREKLWAYPASIAVFGLFIVYQL
                     YRYSFTHDSWLILLSLFDLFVIYLVLHEYRLLRKHLPTH"
     gene            5177..>5731
                     /locus_tag="VE968_08020"
     CDS             5177..>5731
                     /locus_tag="VE968_08020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019051780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FMN
                     adenylyltransferase"
                     /protein_id="HZU51804.1"
                     /translation="MQRLTLAGGIPEQLKGSIVALGNFDGFHLGHQAVVGRAVQRAFH
                     ERRPVIVATFDPHPVRYFKPDVPPFRLTTLDQRERLFAQAGADAMLVFEFGAALASMD
                     ADTFVEGILGRDIGAAGVITGDDFSFGKGRSGDARLLARLGATCGIAAEAVAQVVLDG
                     ERISSGRIREALVAGDTATATRMLS"
BASE COUNT         1081 a         1734 c         1704 g         1212 t
ORIGIN      
        1 gttcaaaaaa aggcgagttg ggtgctgaag ctcgccggcc tcgacatcaa gctcgccgac
       61 gcgatcatcg atggcttgcg aaagctgacg gtcgagatgt cgacggaccc agcgcacccc
      121 gtgcggctga agatcgaaga agcgctcgca cagctcgcca atgatttaca aacccgtgtc
      181 gagacgcgtg agcgcgtcga ggcgatgaaa gagcagctcc tcgacaacag gtcggtcagt
      241 ctgtggctgg atgcactttg gcagaagggc cgggaagccg tcattagagc cgcccgaaat
      301 cccgatgcgg tacttgccgg gcggctcggc gaagtcctga agacgatggg gagcaccctc
      361 gagaaggacc tgcgcattcg caaggcgatc aatcagttta cccgccgtgc aatcgtcggc
      421 atggcagcca gctatggtgg ttcgattgtg aagctcgtct cggaaaccgt tcgtggctgg
      481 gatgcgcgaa ccgtcaccaa tcggctggag tcggcggttg gaagagacct tcaatatatt
      541 cgaataaatg ggactttggt tggcgggctc gttggtctcg cactgcacgt ggtcgacagc
      601 ctgtgagtga cccgcgtgtt gatgcgcttg cacaatcggc ccgcaaccgc ggcctcaagc
      661 tggtccgctc ccgagtccgc acaccaggaa aacccggttt cggcaagacg ggcctcgtcg
      721 atgcgtcggg caagaacgtg ttcggaatgg attcaaaagg accggcggcg gaccccgaca
      781 cggtcgagga atttcttcgc aacctcgaag cgcaggactg gggtgcatcg ctgggtggcg
      841 cagatccgcc gaacttgagc gtcaaaaaga aacatcccaa agcagacgcg ccaacagcaa
      901 cgccatcggc tggccaagcg cgagcgcgaa agcgctcaac cgagcagcca agggttccac
      961 cacgaccaca gatccgcaac gcaaaggccg gcgatgccgc gcgtcttgcc gagcttatcg
     1021 gcgagcttgg gcacgacatc gaggtcgagc aggtccgcaa caacctggca ctcctcggga
     1081 aaacgaaaga aactccactc gttgtgacgc tcgacgatat catcgtcggg atgtgcggcg
     1141 ttgcgaggcg cgtcgtaatt tcacgtcccg cgccgctcgg acgcattacc tcgctgatcg
     1201 tgacgaaaga tacgcaggga ctgggcctcg ggaggatgct ggtcgaagct gcggagtcgt
     1261 ggatgcgcga ttacggctgc aagcttgtcg aggtgacaag caacgaccga cgctccgaag
     1321 cgcacgcctt ttaccggcac atgggctacg aacgcacgag catacgtttc gcgaagaagc
     1381 tctagggcgg accttgcgtt ttctaatgcg cgagttctgg tgtctctgat tgcagcaact
     1441 catcgaagat gttccggtag ccaagaagcg cagagcggag gtcttcggtg tccgcttttc
     1501 cctgtgctcg ccgaacagca atctcatggg ccgcgcggta attgtcgacc agtgccgggt
     1561 ggtcgaccga tatgtcagcg gcacgctgct cgaaatcgtc gacgggatag ccgcgagcct
     1621 tcatgacttc cgcgacgagc gcgtctgcaa gcgcaatcga gcgttccggg tcatcgacga
     1681 accgtgcctg tacttcctgc cagtctgctg caaagcgctc gcgctcctga ggcggcagcg
     1741 ggtggatgtc gagcttttga acccttttct cgcgcttcag cagctcggcc tgagctttca
     1801 tctcacttcc gcccgcctcg cgcacctggc gatcatactc cgatccaaat cgcttcttca
     1861 ggcgttccct ctgccgccta cgcatcactg ttatggcgag gccgatcagt accagcgcgg
     1921 caatgacgat aatgacgatc gctgaagtgc tcatatgcag gctccgttgt gcaactgctg
     1981 cttgatgaac aaaacgcggg tcgccggacc ggggtccact gcttcaatag atccgcgctg
     2041 gcaggaggac ttggctcgct cggatgggtt ggccaacggt tcaaaaacgc acaattccaa
     2101 agcgcgcgtg gtattttttg cgcaatccgc gaccattcca ccatctgccc cgtgactgcg
     2161 ctcgacaaat cgggctatag cccaagcgag caccgctcct agctcaaccg gatagagcgt
     2221 cgggcttcga acccgaaggc tgggggttcg agtccctcgg agcgggccat catcgcgatt
     2281 gtaggctctc gaaacttcgc aagcggaacg ttcccgctac gtcgctcgca acaggcgcgc
     2341 agtgctttgc attgttggtt gcaagggaag gcccatcgca aatcccgtcc cttgacgagc
     2401 gatgcctcac ccgcagggcg ggttcgagca aaatgcattg cggatcttcg cttgtgcatc
     2461 tgcgtaacgc cccaaaaaaa gggccgctcg aatggagcgg cccccttgtt catcgtccgg
     2521 atgttctccg atcagccgag catttcctgc tcgagcttct tggccatttc ctcgatgttt
     2581 tccggcggcc atccggggat gtccatgccg agccgaagcc ccattgaagc tagaacttcc
     2641 ttgatctcat tcaacgactt gcgtccgaag tttggcgtgc gaagcatctc ggcctcggtc
     2701 ttctggacga gatcgccaat gtagatgatg ttgtcgttct tgaggcaatt ggcgcttcgg
     2761 accgacaatt cgagctcgtc gaccttcttc aggaggtagc gattgagctg gttcgtgtcg
     2821 gtcggcgctt ccgccgccat tggcactgcc tgtccaatca tcggcgaagg cgccatgcgg
     2881 acctggcttt cgtcgaagtg aacgaagagc tgcagctggt cctggagaat gcgcgccgca
     2941 taagcaaggg cgtcatccgg tgtaaccgtg ccgtctgtct cgatcgtcag cgtcagcttg
     3001 tcatagtcaa gctcctggcc gacgcgggtg ttctcgacct tgtaggcaac ctgccgaacg
     3061 ggactgtaaa gcgcatcgac ggggatcagt ccgatcggcg catcggccgg acgatttgcc
     3121 gcggcgggct ggtacccttt gcctatgtcc gcggtcagtt ccatgttgag agtcgcaccg
     3181 tcgtcgagat ggcagatcac gagctctgga ttggtgactt caatgtcgcc tgtcgtcgcg
     3241 atcatcccgg cggtaacctc cgccggaccg gtggcgctga ggtggagccg acgtggcccc
     3301 tcgccttcca tcctgagggc aatctgcttc acgttgagaa cgatgtccgt aacatcttcg
     3361 cgaacgccag cgagactgct gaactcgtga agtacgccgt cgatcctgat ggacgtgacg
     3421 gctgcgccct gaagcgagct taggagcact ctccgaagcg agttgccgag cgtcatgccg
     3481 aagccgcgct cgagcggttc cgcgacgaac accgcgcgac gtcgtgagtc gccgccagac
     3541 tggcgcttct ccagtgcgtt cggcttcttg agttcctgcc agttctttgc gttgacagcc
     3601 atttgtcttc ctgccctatg gcgaggcgtc cctcgcctac cttaaattct aatcaccgag
     3661 ggatgtcccc tgcggcagcg gccctttttg ttttccttag acccggcgac gctttgacgg
     3721 ccgaacaccg ttgtgcggga tcggtgtcac gtcgcggatc gacgttatct ggaatccgac
     3781 ggcctggaga gcgcgaagag cgctttcgcg gcctgaaccg ggccccttga cctctacttc
     3841 gagagtacgg acgccatgct ccgctgcctt tcggcccgcg tcctcggcgg cgacctgcgc
     3901 agcgtaagga gtcgatttcc gactaccctt gaaacccatc attccagcgc ttgaccaggc
     3961 aattgcgttg ccctgcgcgt ctgtgatcgt aatcatggta ttgttgaagc tggcgttcac
     4021 gtgggcgacg ccggcggtga tgttcttgcg ctccctcctg cggaggcgct gaggtgcctg
     4081 ggccatctta gctcttacat ccttcgagtc attttgccgt cgatcgcttg ttcagcagtc
     4141 ggtacggcgg aaaagtgttt cgcaatcgtc cgctggacga gcactcgctt acttcttctt
     4201 gccagcgatc ggcttggcct tgccctttcg ggtacgcgca ttggtgtggg tgcgctgacc
     4261 tcgaaccggc aagccccttc ggtggcgaag acctcggtag caggcgagat ccatgagccg
     4321 cttgatgttc atcgcggttt cgcgacgaag atcaccttcg acggtgaagt cgcggtcgat
     4381 cgtctcacga atgtgaagca cttcctggtc cgtcaaatcc tggacgcggc gatctggcga
     4441 gatgccgagc tgctccgtga tcttcttggc cgtcgtgcgg ccaattccat ggatgtacgt
     4501 aagcgcaact tccacgcgct tgttggtggg gatattgacc ccagcaatac gagccattcg
     4561 ttacccttct tcagctccac ggggcgaccg tcgccccatc tcgtcgctag aaaagtccca
     4621 ggtccctaac agaaaagccg acgcgcgcac gaatgcgccg ccgggaaacc ggtggatcgg
     4681 gatggcggcg agataggttt cgcttgcttc gaagtcaagg ccgcgcgtta gtcgcccaat
     4741 gcaggaaaaa cgcattcacc aggttttcgt cattagcatt ggcgcaaagg gcctgcacgc
     4801 cctgattgag ctcgcgggcg gcctcgcact ctactttctt ggaacggaaa cgattgccga
     4861 gtggctccgg ccgcacgaat gggcagcaca tcactttcgc ccgtcggaac agcatttcta
     4921 tgccttctac ctcctcagcc acgggctcgt gaaaggagtg cttgtctatt tcctcctgcg
     4981 cgagaagctg tgggcctacc cggcaagcat cgccgtattc gggctgttca tcgtctacca
     5041 gctttatcgc tactccttca cccacgacag ctggctgatt ttgctctctt tattcgacct
     5101 gttcgtgatc tatcttgtgc ttcacgaata tcgactgctt cgcaaacacc tcccgaccca
     5161 ttaaggccgc tccccaatgc agcgcctgac acttgccggc ggcatccccg agcaactcaa
     5221 ggggagcatc gtcgcactcg gaaatttcga tggatttcac ctcggacatc aggcggtggt
     5281 tggccgcgcc gtccagcgcg cgttccatga gcggcgaccc gtcattgtgg caaccttcga
     5341 cccgcatcct gtccgctatt tcaagccgga tgtgccaccg ttccgcttga ccacactcga
     5401 ccagcgcgag aggctctttg cccaggccgg cgcggatgcg atgctggtgt tcgagttcgg
     5461 cgccgctctt gcttccatgg atgccgacac gttcgttgaa ggaatactcg gccgcgatat
     5521 tggcgccgcc ggcgtgatca cgggtgatga ttttagcttc ggcaaaggcc gaagcggcga
     5581 tgcacggctc ctcgcaaggc tcggcgcgac atgtgggatt gcggccgaag cggtcgccca
     5641 ggtagtcctt gacggcgaac gcatatcctc gggacgcatc cgcgaggcac ttgtggctgg
     5701 cgatacggca acagccacac ggatgctgag c
//
LOCUS       DASRBJ010000290         5880 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_641075,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000290 DASRBJ010000000
VERSION     DASRBJ010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5880
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_641075"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..2308)
                     /locus_tag="VE968_08025"
                     /pseudo
     CDS             complement(1..2308)
                     /locus_tag="VE968_08025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126694.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
     gene            complement(2305..2571)
                     /locus_tag="VE968_08030"
     CDS             complement(2305..2571)
                     /locus_tag="VE968_08030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014076747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HZU51805.1"
                     /translation="MPSDPDLKRLAWRAHHRGIKEADLLIGGFFDAHHESWGAGERAL
                     FNEMLDEQDVDIMAWAHGTAEAPARFQGSMMEALQKLDYIRIAR"
     gene            2635..4695
                     /gene="recG"
                     /locus_tag="VE968_08035"
     CDS             2635..4695
                     /gene="recG"
                     /locus_tag="VE968_08035"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HZU51806.1"
                     /translation="MRPEILNPLFAEVETLKGVGPQFAKLLKKLAIVRTIDLLFHMPT
                     GSIERIRAHQVSADLLGRNVILDVIPSELRENRSGRGPTRIYVKDEKGNRFALVYFNS
                     ASWAKRTLPIGELRTVSGRLERYGQEWQIVHPDVSEPGKGAQPAVREAVYPLTEGLTN
                     RRLGELVREAFERAPELPEWVEPGLLSRNGWHSWRASLSLIHRDASAANARKRLAYDE
                     IFANQLALLLVRQSQRRHKTRALPGTGELVRRLELPYDLTDAQRRVLDEIRGDMLQAQ
                     PMLRLLQGDVGSGKTLVALLAMLTAVESGAQAALLAPTEILARQHHATFLKQLDSIGV
                     RVGILTGREKGRARESVLMGLADGSIDILVGTHAIFQEKVGYRRLGLAVIDEQHRFGV
                     SQRLLLSSKAEHPPHLLVMTATPIPRTLTLTQYGEMDVSRIDQMPPGRTPVETRVISA
                     GKLSDIIEGLARHVVSGGQAYWVCPLVEESETNDAAAAEERVRELRTRLGDERVGLVH
                     GRMKGTEKDAVMARFASGELSVLVATTVIEVGVDVPNSTLMIVECAERFGLAQLHQLR
                     GRVGRGSAKSTCLLVRGQDLTDTGRARLALMRETSDGFRIAEEDLRLRGPGEILGTRQ
                     SGEEAFHIASAEDVEQLAPIAQNDATLLLERDGGLAGPRGQAARICLYLFERDQAVTL
                     LRSG"
     gene            4708..5157
                     /locus_tag="VE968_08040"
     CDS             4708..5157
                     /locus_tag="VE968_08040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HZU51807.1"
                     /translation="MAPTSLLPILLIFISGGLIAMQAPTNALLARAGGSPVLAALISF
                     AVGTVVLFVVWVLSGNRPNGASFANLRWYAWLGGLYGATYVAVAAYAAPRLGLASLIT
                     IGIAGQVAIALWLDQTGALGLPREPINLGRIIGALLVLGGVILVRRS"
     gene            complement(5154..>5880)
                     /gene="tyrS"
                     /locus_tag="VE968_08045"
     CDS             complement(5154..>5880)
                     /gene="tyrS"
                     /locus_tag="VE968_08045"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010238007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HZU51808.1"
                     /translation="QPLTFLEFNYMILQAYDFLELSRRAGCRLQLGGSDQWGNIVNGI
                     ELTRRIDGVELFGVTSPLITTSDGAKMGKTAQGAVWLNADLLSAYDYWQFWRNTQDAD
                     VGRFLRLFTDLPLDEIMKLERLDGAEINEAKIVLATETTAMLHGRAAAIAAQETARAT
                     FEQGESGTDLPRLSLGDGMNIAHALTAIGFTPSNKEAKRKIAEGAVRIDDEIVTDAAM
                     VLTAREEPLKLSLGKKRHGLLVS"
BASE COUNT         1100 a         1763 c         1794 g         1223 t
ORIGIN      
        1 ggatgggagt tgcagtgaga gtaagaacgt gaacgtcgga cttgagtgcc ttgaggcgct
       61 ctttgtgggc gacgccgaaa tgctgttctt cgtcgacgat cacaagtccc agacgcttga
      121 actctacgct cttggcgagg atcgcgtgcg ttccaatgac aatgtcgacg gtcccgtcgg
      181 cgaggccctc ctttgttttc ttcgcttagg cggccggaac cagtcttgag agtcggccaa
      241 ccttgagcgg gaagccatga agtcgctgct cgaagttgcg gtagtgctgt cgtgcaagga
      301 gcgttgttgg gcacaccaac gcaacctgtc ttcccgacat tgccatcacg aaagcggcgc
      361 gcaatgcgac ctcggttttc ccgaagccga cgtcgccgca cacgaggcgg tccatcggcc
      421 gcccggcttc gagatcgccg agcacgtcgc tgatcgcatg ctcctggtca tccgtttcct
      481 cgtagggaaa tccgtcgaca aatactgggt aactcgcatc cggctcggcg atgaggccgg
      541 ctcgtgtcgc gcgcagggcg gcaaccttga taagctcacc cgcaatttcg cggatgcgct
      601 ctttcattcg cgacttgcgg cgctgccacg cttcgccgcc gaggctgtcg agggaaacac
      661 cctcgctttc gcttccgtaa cggctcagca gctcgatatt ttcgactgga acgtagagct
      721 tgttgccgcg cgcatattct agcgcgacgc agtcgtgtgg cgagtttccg accttgatct
      781 gcgtcagccc ctcgtatcga ccgataccat gatcggcatg gaccacgagg tcaccaggcg
      841 tgagagttgc gagttccgcc aggaatgcat cggcggcctt gcgtttcttc cgacgtcgaa
      901 cgagccggtc gcccagaata tcctgttccg tcagaaccgc gacatcaggc gtcgtgaagc
      961 catgatccaa cggaagcaca aggagcgatg gttgcgtctt tgaaccaagt gcttcttgcc
     1021 acgtctcaac ttgcttgtgg gatttgaggc cgtggtcctc aagaagcccg gtcaggcgct
     1081 cgcgggcgcc gcgggtgtag cttgcaagaa cgacctttcg tccgctcttg cgcaggctcg
     1141 caacatgctg cgttaccgct tcatagacgt tcgcctgttg ggcacgttcg ggagcaaagt
     1201 cgcgcgccgg ttgcacgtcg aaggcgatga cgcgatccga ctcgggttcg gggaaggacg
     1261 aagcgagatg gatcggccgc tccgtcacga gacgatccca ctcgcttcgc atcaggtaaa
     1321 gcgacgttgg ttcaagcggc ctgtagctgc cgggctcggc taccatcgca cggacgcggt
     1381 tctggaaata atcttcgatt gcctcttggc ggccctggat cgcctggtca gccgaacttt
     1441 cgcggatcac gaggtcattg tcgccaagat ggtcgaacaa ggttgcgaga cgctcttcga
     1501 tgagtggaag ccagtgctcc atgcctgcca ttcggcgacc ctcggagagt gcctggtaga
     1561 gagggtcctg cgtcgaggct gcgccaaatc gttctcgata gcgtgagcgg aatcgcttga
     1621 tgctgtcgac gtcgagcagc gcctccgagg ctggcatgag agtgaaggcg tccgccttgt
     1681 cggtcgagcg ctgatcaaca gggtcgaagc ggcggacact gtcgatttcg tcgccaaaga
     1741 agtcgaggcg aagcgcaagc tcctcgccgg ccggaaacac gtcgataagg gagcctcgca
     1801 ccgcgtattc gcccgcctcg gcaaccgtgt ccgcacgctg gtatccaagc gaattgagct
     1861 gctcgacgag gttctcgcgg tcaatccgct cgccttcggc gatccgtcgc gtaagttgtc
     1921 gaatgcgaaa aggcgtcagc atccgctgcg acgcggcgct cgccgtgacg acgagcaact
     1981 gcggcttgtc acgtctggat tgaagtgcgc tcaaggtcgc caaccgttca gccatgacgc
     2041 gcaacgcagg cgatgcgcgg tcgtaaggga gacaatccca gcccggcaag gtgaggagtt
     2101 ccacctcggg cgcaaacaag gggaccgttt ccgccagtcc acgcattgcc gcctcgtcag
     2161 caacgatagc gaccgcgcgc gcccccttgc cactcccgtg cgcagcacgc gcaaggtccg
     2221 ctgcgagcaa tggcaggaaa ccggtgggta cgccggcgag cgtcaggact ttgttcgtgc
     2281 gaaggacgcg ctggagcggc tcgctcatcg agcgatccgg atgtaatcga gcttttgaag
     2341 tgcttccatc attgaaccct ggaagcgcgc cggtgcctcg gcggttccgt gcgcccaggc
     2401 catgatgtcg acatcctgct cgtcgagcat ttcgttgaac agggcgcgct cgcctgcacc
     2461 ccatgattcg tggtgcgcat caaaaaagcc gccgatcagc aggtcagctt ccttgatgcc
     2521 gcgatgatgg gcgcgccacg cgaggcgctt caggtccgga tccgatggca tgaaaggcat
     2581 ttagtaatcg cagtgcgtca ttgcgagcgc gataacagcc gctaacagtc aatcatgcgg
     2641 ccagaaatcc tcaacccgct ctttgctgaa gtggaaacgt tgaagggagt ggggccacag
     2701 tttgccaagc tgctaaagaa gctcgcgatc gtccgaacaa tcgacctcct gttccacatg
     2761 ccgacggggt cgatcgaacg catacgggcg caccaagttt ctgctgatct cctcgggcga
     2821 aatgtcattc tcgacgtcat tccctccgag ctgcgcgaga accgctccgg acgcggtcca
     2881 acccgcatat atgtcaagga cgagaagggg aatcgcttcg ctctcgtcta tttcaacagc
     2941 gcgtcctggg cgaaacgcac attgccgatc ggcgaactgc gcaccgtttc gggcaggctc
     3001 gagcgctacg gtcaggaatg gcaaatcgtc catcccgacg tgagtgagcc cggcaagggc
     3061 gcgcagcccg ctgtccgtga ggcggtctat ccactaacgg aaggactcac aaaccgacgt
     3121 cttggagagc tcgttcgcga agcgtttgaa cgcgcgcctg agctacccga gtgggtcgag
     3181 cctggtttgc tgtcgcgcaa tggctggcat tcgtggcgag cttcgctctc cctcatccat
     3241 cgtgatgcgt ccgcagcgaa cgcgcgcaag cgattggctt atgacgagat ctttgcgaac
     3301 cagcttgcac ttctcctcgt ccgccaatcg cagcgtcggc acaagacgcg cgcccttccc
     3361 gggaccggcg aattggtgcg aagacttgag cttccctacg atcttacgga tgcgcagcgg
     3421 cgcgtgctcg acgaaatccg tggcgacatg ctccaggctc agccaatgct tcgcctcctt
     3481 cagggcgatg ttggctcggg caagacgctg gtcgctcttc tggcaatgct caccgccgtt
     3541 gaatcaggag ctcaagcagc acttcttgct cccaccgaga tattggcgcg gcagcaccat
     3601 gcgacctttt tgaaacagct cgacagcatc ggggttcgcg tgggaattct gacgggacgc
     3661 gaaaagggaa gagctcggga gagcgttctc atgggcctcg ccgatgggtc gatcgatatt
     3721 ctcgtcggga cgcacgccat atttcaggaa aaggtcggct atcgccggct cggcctagcc
     3781 gtcatcgacg aacagcatcg ctttggtgtc tcgcagcgcc tgttactttc ctcaaaggcc
     3841 gagcacccac cgcacctcct cgtgatgaca gcgacgccca tcccgcgaac gctcacgctc
     3901 acgcaatatg gcgagatgga cgttagccgt atcgaccaaa tgccgcccgg gcgaacgccg
     3961 gtcgagacgc gtgtaatcag cgccgggaag ctcagcgaca taatcgaggg tctcgctcgg
     4021 cacgttgtct cgggtggaca agcatactgg gtttgtccgc ttgtcgagga gagcgagact
     4081 aacgacgccg ctgcggcgga ggagcgtgtt cgtgaactcc gcacgcgact tggtgacgag
     4141 cgggtggggc tcgttcatgg ccgcatgaaa gggaccgaga aggatgcggt gatggcacgt
     4201 tttgcttctg gtgagctctc ggtcctcgta gcaacaaccg tgatcgaagt tggagtcgat
     4261 gttcccaatt cgacattgat gattgtcgag tgcgcggaac gtttcggtct tgctcagctg
     4321 catcagctac gtgggcgcgt tggccgcggt tcggccaaga gcacatgtct tttggttcgg
     4381 ggacaggatc tcaccgatac gggcagagca cgcctcgcgc tgatgcgcga aacaagcgac
     4441 ggtttccgga ttgccgagga agaccttcgc ctgcgtggac caggagaaat tcttggtacc
     4501 cgccaatcgg gcgaggaggc gtttcacatc gcctctgccg aggatgttga gcaacttgcg
     4561 cccattgctc agaacgacgc aacgcttctg ctcgaacgcg acggcggcct cgctggacca
     4621 cgcggccaag ccgcccgcat ttgtctctac ttgtttgaac gcgaccaggc cgtcacgttg
     4681 cttcggtctg gttaggaaat tctcgcgatg gcgccaactt ctcttctgcc gatcctgctc
     4741 atattcattt cgggcggctt gatcgccatg caggcgccca ccaatgccct actcgcgcga
     4801 gcagggggat cgcccgtcct cgcggcactt atctcctttg ccgtcgggac ggtcgtgctc
     4861 tttgtcgtct gggtgctgag cggcaatcgt ccgaatggag cttcattcgc caatttgcga
     4921 tggtatgcct ggctcggggg actttatggc gcgacctacg tcgccgtcgc tgcctatgca
     4981 gcgccgcgcc ttggcttagc ctcgctgata acgatcggca tcgcgggaca agtcgcgatt
     5041 gctctctggc tcgaccagac gggcgctctc gggcttccgc gtgaacccat taatctcggg
     5101 cgcataattg gagcgctgct tgtgcttggc ggcgtaatat tggtcaggcg cagctaggaa
     5161 acgaggagcc cgtgccgctt cttcccaagg cttagcttca gtggctcctc acgggccgtc
     5221 agcaccatgg cggcgtcggt cacgatttcg tcgtcgattc ttaccgctcc ttccgcaatc
     5281 ttgcgcttgg cttccttgtt cgacggcgtg aagccgatcg cagtcaaagc atgagcgata
     5341 ttcatcccgt cgccgagtga taatcttgga aggtcggtgc ccgattcacc ctgctcgaat
     5401 gtcgcgcgtg ccgtttcctg ggcggcaatt gccgcggcgc gtccgtgcag catggcggtt
     5461 gtttccgttg cgagaacaat cttcgcctca tttatttcgg ctccgtcgag gcgctcgagc
     5521 ttcattatct cgtcaagcgg aaggtcggtg aacaggcgaa ggaagcggcc gacgtcggca
     5581 tcttgcgtgt ttcgccagaa ttgccagtag tcataagcac ttagcagatc ggcattgagc
     5641 cagaccgccc cttgcgcggt cttccccatc ttggcgccgt cgctcgttgt aatgagaggc
     5701 gacgtcacgc cgaacagttc aacgccatcg atccgacgcg tgagctcaat gccgttgacg
     5761 atgttgcccc actggtcgga accgccgagt tgcaatcggc agcccgcgcg ccgcgagagc
     5821 tccaggaaat cataggcctg caagatcatg taattgaatt cgaggaaggt cagtggctgt
//
LOCUS       DASRBJ010000291         2396 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_137983,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000291 DASRBJ010000000
VERSION     DASRBJ010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2396
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137983"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..651)
                     /locus_tag="VE968_08050"
     CDS             complement(100..651)
                     /locus_tag="VE968_08050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008827766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HZU51809.1"
                     /translation="MTILHLDSSINGENSASRVLSRSIVEQISNAARGDAIVYRDLAS
                     NPLPHLTLEAFADSSVLDEFLAADKVVIGAPMYNFTLPTQLKAWLDRIVIAGKTFRYT
                     ESGPEGLCRGKRVIIALARGGFYDSGSAAAALEHLETYLRGIFNFIGIEPEFVAADGL
                     SIGASQREQSIKQALGETVRLAA"
     gene            777..1151
                     /locus_tag="VE968_08055"
     CDS             777..1151
                     /locus_tag="VE968_08055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007687883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HZU51810.1"
                     /translation="MKDPHSPVCRTISGLLQRIGDKWTVLVVQTLAEGPRRFNELRRE
                     IPSVSQRMLTLTLRNLERDGLVSRTVTPTIPPRVDYELTELGRSLQKPICGLASWAMD
                     NVGAIEAAQKRFDSKQDQRRAA"
     gene            1296..1766
                     /locus_tag="VE968_08060"
                     /pseudo
     CDS             1296..1766
                     /locus_tag="VE968_08060"
                     /inference="COORDINATES: protein motif:HMM:NF039588.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
     gene            1763..>2396
                     /locus_tag="VE968_08065"
     CDS             1763..>2396
                     /locus_tag="VE968_08065"
                     /inference="COORDINATES: protein motif:HMM:NF015297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HZU51811.1"
                     /translation="MNEPRSWLFVPADSERKISKALDTAADAIIFDLEDSVAPSEKQR
                     ARDILKALPKRSNGPQWWVRVNPLGSEFHKEDLKLIGSAYVRGIVLPKAESGADVTEL
                     AHRTGNIPVHAIVTETAASLFGLLSYRHPNSPLKAMSWGAEDLSAALGASSKYDETGE
                     LSFTYKLARSLCLAGAVAAGVQPVDGVFADFRDLDRLKREAEQARHEGFTG"
BASE COUNT          492 a          718 c          721 g          465 t
ORIGIN      
        1 gccccgatgc tgcgcgaggg agcgtagcgg cggcaccggg gctcacgttg gcggcgcggt
       61 tggggaggag agaagtgccg ccaaaattac gtgcttcgct tacgcggcca gccgcactgt
      121 ctcgccgagc gcctgcttga tcgactgctc gcgctggctt gcaccgatcg agaggccgtc
      181 ggccgcgaca aattccggct caatgccgat gaagttgaaa attccgcgaa ggtaggtctc
      241 gagatgttca agagccgcag cagcagaacc cgagtcataa aaaccgccgc gagcaagggc
      301 gatgattacg cgcttgcctc ggcaaaggcc ctcgggccca ctttcggtgt agcggaacgt
      361 cttgccggcg atgacgatgc ggtcgagcca tgccttgagc tgcgttggaa gcgtgaaatt
      421 gtacatcggc gcaccgatca cgaccttgtc ggccgcgaga aactcgtcga gcaccgagct
      481 gtcggcgaag gcctcgagag tgaggtgcgg aagaggattt gaagcaaggt cgcggtagac
      541 gatcgcgtcg ccccgcgcag cgttcgagat ctgctcgaca atcgaccggc tgagcacccg
      601 gctcgcgctg ttttcgccat tgatgctcga gtcgagatgc aggatggtca ctattgcctc
      661 ctaagtattg atttgttacc gaggcacctc aaataaccat cgttcaaacg gccgcaagaa
      721 cgcacttttt tgttttacgc gaacaaattt gtgctgtgga aacatagagg taacccatga
      781 aagatccgca cagcccggtt tgccgcacga tcagcggtct tctccagcgg attggggaca
      841 aatggacggt cctcgtggtc cagacgcttg ccgaaggtcc acgccgcttc aatgaacttc
      901 gccgtgagat tccgagcgtt tcgcagcgca tgttgacgct caccttgcgc aacctcgagc
      961 gtgacggact tgtaagccgc accgtcacgc cgacaatccc gccacgcgtc gattatgagc
     1021 tgaccgaact tggtcgttcg cttcagaagc cgatctgcgg tcttgcgagc tgggcaatgg
     1081 acaatgttgg agcaatcgaa gcggcgcaaa aacgattcga cagcaagcag gaccagcgcc
     1141 gagcggcata ggatcgttcg actaagcttc atcgcccact ccgctccgcc tggcttcggc
     1201 tacgttcgcc tggacgggca gggttcccga tcttcgtccg gcagacatgt tgcgggtgac
     1261 gccgtcactg aagcggttgc cgagcttttg ctcgccgcct agatgcgact gtcatggccg
     1321 ggcgttattt cgacgagtgg caggtgggag accgtgtcgt cagcgggctc acgcgaactg
     1381 tcaccgagac cgacaatctc ctcatcacga cactgacgca taacccacaa cctttgcacc
     1441 ttgattacga ggcggcggca agaagcgagt tcggaaggcc cctcgtcaac agctgcttca
     1501 ccttcagcct gctggtcggc ataaccgttc acgacacgac gtttggaacg ctcgttgcca
     1561 accttgctta tgacaaggtg gtcttcccca agcccgtttt tgcgggtgac accctccgct
     1621 gtgagtgcga atgcgttgcg cttcgcgaaa gcaagtcgcg gcccaatgcc gggatcgtca
     1681 cttgggcgct aagggcgttc aaccagcgtg acgagctcgt ctgcgaatgc acgcgcacgg
     1741 cactccttct gaagcggccg cagtgaacga gcccagatcc tggctgttcg tgcctgccga
     1801 cagcgagcga aagatcagca aggcgctgga taccgcggcc gatgccataa tcttcgacct
     1861 cgaagacagc gttgcgccaa gcgaaaagca gcgcgcgcgt gacatattga aggccctccc
     1921 gaagcgctcg aacgggccac aatggtgggt ccgcgtgaac ccccttggaa gcgagttcca
     1981 caaggaggat ctaaagctaa tcggtagcgc ctatgtccgc gggatcgtcc ttccaaaggc
     2041 cgaaagcggg gccgatgtga ccgagcttgc ccatcgtacc ggcaacattc ccgtgcacgc
     2101 catcgtgacc gagacggccg caagcctttt tgggctcttg tcctatcgtc atccaaactc
     2161 gccgctgaag gcgatgagct ggggcgccga agatctctcg gcagcactcg gcgcctcgtc
     2221 aaaatatgat gaaaccggtg aactcagctt cacttacaag ctcgcacgct cgctttgtct
     2281 ggcgggcgcc gtcgcggccg gcgttcagcc agtcgacggt gtttttgcgg actttcgcga
     2341 tctcgatcgc ctgaaacgcg aagcggaaca ggcgcggcac gagggcttta ccggca
//
LOCUS       DASRBJ010000292         2460 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_707050,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000292 DASRBJ010000000
VERSION     DASRBJ010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2460
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_707050"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..795
                     /locus_tag="VE968_08070"
     CDS             <1..795
                     /locus_tag="VE968_08070"
                     /inference="COORDINATES: protein motif:HMM:NF024860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HZU51812.1"
                     /translation="KTVLAKYLDLYFSERHGSSLLAEGSVSYFYGPEQLEPVLRLWPR
                     SKFIICLRNPLQMVPSLHQRLFYNGDETERQFDRAWSLVPERRNGRFIPRSCIEPRFL
                     DYWEAGHLGKHLERFVNIVGPERCHVSIFDDFKNDPGREYRRVLQFLELPDDKRSDFD
                     IHAESKDCRIAWIHRMMKRPPKAAMWLFDREDLQVMVEGVGKPSPFLDKVMEIRGKII
                     DWNKVPAKRPKIGLRVLNEMRDMFRKDIALLSQLLGRDLSHWLEKA"
     gene            905..1861
                     /locus_tag="VE968_08075"
     CDS             905..1861
                     /locus_tag="VE968_08075"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: protein motif:HMM:NF005089.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008677 - 2-dehydropantoate 2-reductase
                     activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HZU51813.1"
                     /translation="MPLSTIWLIRELMKIAVIGAGAIGGWVAAKLALAHEQVMALTSR
                     GYLEQIDIIENASRQTARLSRFSGAADVLVIAVKATSLRNIVTGAKPLISPATTIVPM
                     MNGVPWWFIEGVRLKSVDPSGEIASTFPSSQVTGCVVHASCSRSGGAVLVKHADKLII
                     GKPNGELGEDLAHLHALFDRAGLRAETSDNIRSAIWYKLWGNATINPMSALTRATCDR
                     ILSDPECRSWMLEGMSELASAGAAIGCPISESGADRMAVTERLGAFKTSMLQDVEAGR
                     PLELEALLGAPREIARAHQLETPALDRLYALTKLLADGLGLH"
     gene            complement(1832..>2460)
                     /locus_tag="VE968_08080"
     CDS             complement(1832..>2460)
                     /locus_tag="VE968_08080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017500055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HZU51814.1"
                     /translation="GYCLLNDWSARDLQAWEYQPLGPFLAKNFHTSVSPWIVTPQALA
                     PFRRPMRPRPEGDPKPLPYLDDPLDGASGALGIELEVTLSTTKMRREGIAPHLLSRGS
                     ADAAMYWSAAQIVTHHTSNGCNLEPGDLIGTGTLSTDQSTGLGSLLEISQGGKAPIRL
                     SSGEERSFLEDGDEVTLRAWCERDGVRIGFGDCVGRVIPSVESKPVGE"
BASE COUNT          491 a          756 c          732 g          481 t
ORIGIN      
        1 aagactgtac ttgcgaaata tctcgacctt tatttttcag agcgccacgg ttcatcgctg
       61 ctcgccgagg gttccgtcag ctacttttat ggccccgagc agctcgagcc ggtcctgcgc
      121 ctctggcccc gctcgaagtt cattatttgc cttcgaaatc cgctccagat ggttccttcg
      181 cttcaccagc ggctgttcta caacggcgac gagacggagc gccaattcga ccgcgcttgg
      241 tcgttggtcc ctgagcggcg taatggccgg ttcattccga gaagctgcat cgagccgcgc
      301 ttcctcgact attgggaagc tgggcacctc ggcaagcatc tcgagcgctt cgtcaacatc
      361 gtcgggccgg agcgttgcca cgtgtccatc ttcgacgatt tcaagaatga tcccggtcgc
      421 gaatatcgcc gagtgctcca attccttgag cttcccgacg ataagcgctc cgacttcgac
      481 atccacgccg agagcaagga ctgccggatc gcttggattc accggatgat gaagcgtccg
      541 ccgaaagcgg cgatgtggct gttcgaccgc gaagatctcc aggtcatggt cgaaggcgtc
      601 gggaagccca gcccattcct cgacaaagtc atggaaattc gtggcaagat catcgactgg
      661 aacaaggtgc cggcaaaacg gccgaagatc ggtctcaggg tcctgaacga gatgcgtgac
      721 atgttccgta aggacatagc gctactgtcg cagcttctgg gccgcgatct tagtcactgg
      781 cttgagaaag cctgagtagg ctccggctgc cgcaaggcga ggcttcgccg ctagagcgcg
      841 tcgatgatgg tgcactcgca acgagagcgg gtcaaagaag tggcaagcaa tcatcggcgg
      901 agccttgccg ctatcaacca tctggctcat ccgggagctc atgaagatcg cagtaatcgg
      961 cgccggcgca attggcggct gggtcgcggc taaactcgcg ctcgcccacg aacaggtgat
     1021 ggcactcacg agccgcgggt acctcgagca gatcgacatc atcgagaatg cgtcgcgaca
     1081 aacggcacgc ctgtcgcgct tttccggagc agccgacgtc cttgtaatcg cggtcaaggc
     1141 aacgtcactt cgcaatatcg tcaccggcgc gaagccgctg atcagccccg cgacaacaat
     1201 cgttccaatg atgaacggcg ttccctggtg gttcatcgaa ggcgtcaggc tgaagtcggt
     1261 cgaccccagc ggagaaattg cttcgacgtt cccgagctcg caggtcaccg gctgcgtggt
     1321 gcatgcgtcg tgcagtcggt cgggcggagc ggtcctcgta aagcatgccg acaagctgat
     1381 catcggcaag cccaacggag agttgggcga ggaccttgca cacctccatg cgctttttga
     1441 ccgtgccggt ctccgagcag aaacgagcga caacatccgc agcgcaatct ggtacaagtt
     1501 gtggggcaac gcgacgatta acccgatgtc ggctctgacg cgcgccacct gcgacaggat
     1561 tctgtccgat cccgagtgcc gctcctggat gctcgaagga atgagcgagc tcgcttccgc
     1621 gggcgctgcc atcggctgcc cgatcagcga aagcggtgcc gaccgaatgg cggtgacgga
     1681 gcgtctgggg gcgttcaaga cctcaatgct tcaggacgtg gaagccggtc gtcctctcga
     1741 gctggaggcg ctgctcggag cgccgcgtga aattgctcgc gcccaccagc tcgagacacc
     1801 ggcactcgat cgcctttacg cgctaacgaa actactcgcc gacgggcttg gactccactg
     1861 atggaatgac acgcccgacg caatcgccaa agccgatgcg cactccgtca cgttcgcacc
     1921 atgccctaag agttacttcg tcgccgtctt caaggaagct gcgttcttcg ccactcgaaa
     1981 gccttatcgg cgcctttccg ccctggctga tctcgaggag cgacccgaga ccggtggatt
     2041 gatccgtcga caatgtcccg gtcccaatga gatcgcccgg ctcaaggttg catccgttgg
     2101 acgtgtgatg ggtgacgatc tgtgcagcgc tccagtacat ggcggcatcg gccgagcccc
     2161 tcgagagtaa gtgcggagca attccctcgc gtcgcatctt cgtcgttgag agcgtcacct
     2221 cgagctctat cccgagcgca ccgctcgctc cgtccaaggg atcgtcaaga tagggtagcg
     2281 gcttcggatc gccttccggc cgcggccgca ttggccttcg aaacggcgca agtgcctgtg
     2341 gcgttacaat ccacgggcta acgctcgtgt ggaaattctt tgcgaggaaa ggcccgagcg
     2401 gctgatattc ccaggcctgc aagtcgcgcg cagaccagtc attgagcagg caatacccag
//
LOCUS       DASRBJ010000293         7546 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_32227,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000293 DASRBJ010000000
VERSION     DASRBJ010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7546
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32227"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..587
                     /locus_tag="VE968_08085"
     CDS             <1..587
                     /locus_tag="VE968_08085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HZU51815.1"
                     /translation="NGQDGLFRATDGSFDLIVLDRMLPVLDGLSVLKALRAARIDTPV
                     LILSALASVGDRIEGLECGSDDYLVKPFSFAELLARVNALLRRRESRIDPTEHRLTVG
                     DLEIDPLSRTVKRAGKKLDLKPREYLLLEYFARNEGRVVTRTMLLEQVWDYHFDPGTN
                     VIDVHVSRLRRKLDEGFEKPLLHTVRGAGYMLAA"
     gene            606..1973
                     /locus_tag="VE968_08090"
     CDS             606..1973
                     /locus_tag="VE968_08090"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU51816.1"
                     /translation="MPTTLRIALLAGLLALLSNLAVIGFIYYRTHDDAVVTVRQQVAE
                     QAKVLSDVYRTGGRPALDDAIQDTVVYGDPQTVIALVEPSGREPLGNLETHPPTFLPR
                     QEGYHNALVRLKGQTTPRVAAIVVHRLPTGEWLASGRIAGEGFAIRDTLERSMFIALV
                     VAVLLGLLCGVVLAHYVGQRIGDIAAVANRISARDLSQRVPLSGAGDAFDRLGSQINA
                     MLDRITGLMEELRLLTDSLAHDLRSPVSRLRSAAQAAAEATDAGEQEELLSNVIRQAD
                     ALMRILSAVLEISRSEALTGRKQFAWFDAGELAAELAEMYDPLADERGARLEFERPLR
                     PVPLFGHRQLLAQAISNLIENAIRYASAGREIRVRVRPADQRVRIEVADRGPGIPAER
                     RAEARRRFGRLDSSRSDEGAGLGLALAEAIAHLHDGQLVLEDNDPGLLTSLELPFHAQ
                     QSRAA"
     gene            2088..2879
                     /locus_tag="VE968_08095"
     CDS             2088..2879
                     /locus_tag="VE968_08095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51817.1"
                     /translation="MAQHGYFREYDEGWDRGDDRDRERDWRDEGRNGPPRTSAEGRRQ
                     GSRDSRNDERGERDRSGNFMFSDGEREWDRAERGPDHYPSQSSERAQSWFRDDDRQYR
                     RTHPDEWNTRESGRSAGSGRTRGYGSFQEDYGSSQSRQPTRDARGDWERSPRNFSSHQ
                     DDHYRSWRDRQMRALDRDYEDYCREREQQFHQDFDSWRRNRQKPTEGREQQQSQGSQA
                     PSEEVMELSSRADEVLQPRATPSPTAEATLGTNNSENSGTGRGTD"
     gene            complement(2921..3535)
                     /locus_tag="VE968_08100"
     CDS             complement(2921..3535)
                     /locus_tag="VE968_08100"
                     /inference="COORDINATES: protein motif:HMM:NF004785.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HZU51818.1"
                     /translation="MRNFRVLLLGAIPLTVCGTMSEAKIHLFGKPRASAQTASSPRKP
                     TVSGPQPIPYHWTAGAAPKAHWDMVAKFKKVGLSPGQYVWATGAVPSGETRIIVDLLT
                     QMTYVYRGDELLGASTMSSAKTGHITPYGNWTILEKRPFYRSKKYDNAPMPWMERIDN
                     YGIAFHGGVNPGYPASHGCMRLPMKFAEKLYGVTKIGTKVLIEG"
     gene            3673..4230
                     /locus_tag="VE968_08105"
     CDS             3673..4230
                     /locus_tag="VE968_08105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HZU51819.1"
                     /translation="MPVTSLDAKTALVVIDLQKGIAAMAGPAAIEKPVRNSRRLADAF
                     RRHSLPVVLVNVAGAAPGRTEQPRSTEAPPSNWTELLPDLGQQPEDICVTKKTWGAFA
                     STDLEQQLSNRGVTQVVITGVATSIGVESTARQAYEAGFNVTLAIDAMADLRPEAHNS
                     SISNIFPRLGETGTTDEILALLERS"
     gene            4227..5524
                     /locus_tag="VE968_08110"
                     /pseudo
     CDS             4227..5524
                     /locus_tag="VE968_08110"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(5532..7025)
                     /locus_tag="VE968_08115"
     CDS             complement(5532..7025)
                     /locus_tag="VE968_08115"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HZU51820.1"
                     /translation="MGVKWLLVLSALCAISAAPPKVDPDTSSWWATTAQLSNDAMEGR
                     DTGSPAYERAARLVASKFKSAGLSPAGEGGTWFQRVPMHEIRIVSAKVTVGERRLLFL
                     HDLTVTPTEGMPAQLDASLFYGGYCEPASLGNVAGKIVICHGTHKAGLPTAAQRESAV
                     RAAGGVGILTIADPGFTIEPPRWPYAYARTVTLASARGNPDRFVRMTLNAASLGKVLE
                     GAAAGGEAAALVEEGSAGKPLASFAVPSRLRAQFTIRERDLSSPNVLAYLPGSDPRLA
                     DQTIVLSAHLDGYGYGEPVKGDRIYNGTLDDAAYVALLIRLAERRERKPFRRPVLFAA
                     WTGEEKGLLGSRWFIQHMTIPKSRIAADINLDQLRPIFPLRLLTVHALDDTSLGDDAR
                     AVAANLDIAVQKDPEPERNLLQRSDQWPFLQAGIPATAFVFGYRPGSASERIYRQWYR
                     TGYHKPQDDLQQPMDWRAAPTSTASSTNWSSAWLISRKRLPGNQEAR"
     gene            complement(7016..>7546)
                     /locus_tag="VE968_08120"
     CDS             complement(7016..>7546)
                     /locus_tag="VE968_08120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013039131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP synthase (glutamine-hydrolyzing)"
                     /protein_id="HZU51821.1"
                     /translation="GPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRELGRELGL
                     PDAFVGRHPFPGPGLAIRIPGEVTREKCDILRKADTIYLEEIRNAGLYDAIWQAFAVL
                     LPVRTVGVMGDYRTYDHVCGLRAVTSLDGMTADIYPFDAAFLSRVATRIVNEVQGINR
                     VVYDYTSKPPGTIEWE"
BASE COUNT         1487 a         2298 c         2265 g         1496 t
ORIGIN      
        1 ccaatgggca ggacggcttg ttccgcgcga cggacggcag cttcgatctg atcgtcctcg
       61 accggatgct tccagtcctc gacgggcttt ccgtgttgaa ggcacttcgc gcggcgcgga
      121 tcgacacgcc cgtgttgata ctttccgcac tcgcttccgt tggtgatcgt atcgagggtc
      181 tggaatgcgg atcggacgat tacctcgtga agcctttctc gttcgcggag ctgctcgcgc
      241 gtgtgaatgc acttttgcga cgccgcgaat cgcgcatcga ccctaccgaa caccggctaa
      301 cagttggcga tctcgagatt gatccattat cacgcaccgt gaagcgcgct ggcaagaagc
      361 tcgatcttaa gcctcgcgaa tacctgcttc tcgaatattt cgcccgcaat gaaggtcggg
      421 tggtcacgcg caccatgctg ctcgagcagg tctgggacta tcactttgat ccgggcacga
      481 atgtcatcga cgtccatgtc agccgattgc gccgcaagct cgatgagggg tttgaaaagc
      541 cacttctcca caccgttaga ggagcgggct acatgcttgc cgcatagtcg gtagaagcga
      601 aaagcgtgcc cacgacctta cgcatagcgc tccttgcggg gcttctcgcg ctgctttcga
      661 acctcgcagt gatcgggttc atttactacc gcacgcacga tgatgcggtg gtgacggttc
      721 gccagcaggt tgccgagcaa gccaaggtgc tttccgatgt gtaccggacc ggcggtcggc
      781 cagcactcga tgacgctatt caggacaccg tcgtctatgg cgatccacag accgtgattg
      841 cccttgtcga gccgagcggg cgcgagccgc tgggcaatct cgagactcac ccgccgacct
      901 tccttcctcg ccaggaaggt tatcacaacg cgctggtgcg tcttaaaggc cagacgacac
      961 cgcgggtcgc cgcaattgtc gtgcataggc ttcctactgg cgaatggctt gcaagtggcc
     1021 gcatcgccgg tgaaggtttc gcgattcgcg atacgcttga acggtcgatg ttcattgcgc
     1081 tcgtcgtcgc cgtgctcctg gggctgctct gtggagtcgt ccttgctcat tatgtcggcc
     1141 agcgtatcgg ggacatcgcc gccgtcgcca accgcatcag cgctcgcgat ctgtcgcaac
     1201 gcgttccctt gtccggtgcc ggcgacgcct tcgatcggct cggaagccaa atcaacgcca
     1261 tgctcgaccg catcactggg ctgatggaag aactccgatt gctaaccgac agcctcgcgc
     1321 acgatctacg atcgccagtg agccggctcc gatctgcggc gcaagcagca gcggaggcaa
     1381 ccgacgcagg cgaacaggag gaacttctct cgaacgtgat ccgtcaggcc gatgcactga
     1441 tgcggatatt aagcgccgtg ctagagatca gtcgctccga ggcactcact ggccgcaagc
     1501 aatttgcgtg gttcgacgcc ggcgaactcg ccgcagaact cgccgaaatg tacgatcctc
     1561 tcgcggacga gcgcggggca cggctcgagt ttgaacgtcc actgcgtcca gtaccgctct
     1621 tcggccatcg gcagcttctt gcgcaggcga tcagcaatct tatcgagaat gcgatccgct
     1681 atgcgtccgc tggccgagaa atccgggtac gggtccggcc ggccgatcag cgcgtccgga
     1741 tcgaggtcgc tgaccgaggt cccgggatcc ccgcagagcg ccgcgccgaa gcccggcggc
     1801 gattcgggcg cctcgactcg agccgatctg acgagggtgc cggtctcggc ttggcgcttg
     1861 cggaggcgat cgcccatttg catgacggcc agctcgtgct cgaggataat gatcccggat
     1921 tgcttaccag cctcgagctg ccattccatg cgcagcaatc gagagccgcc taagccccac
     1981 tgctgccaat ttttcggctg ttcgacgaac tgcgcatcct gaggccgccc ccgatcgttt
     2041 cgataaccgg cataattagc cggacttcac cacctggagg aattcgaatg gctcagcacg
     2101 gctattttcg cgaatatgat gagggctggg atcgtggcga cgaccgcgac cgtgaacgtg
     2161 actggcgcga cgaagggcgc aatgggcctc cgcgaacgag cgcggaaggc cggaggcaag
     2221 ggagccgcga cagccgtaat gatgagcgcg gcgagcgcga ccgaagcggt aatttcatgt
     2281 ttagcgacgg cgagcgcgaa tgggatcgtg cggagcgagg ccccgaccat tatccaagtc
     2341 agtccagtga acgcgcgcaa tcatggttcc gcgatgacga tcgccagtac cgccgcacgc
     2401 acccggatga atggaacacg cgcgaaagcg gcaggtcagc tggctcggga cgcacgcgcg
     2461 gctatggcag cttccaagaa gactacggca gttcgcaaag ccgacagccg acccgtgatg
     2521 cgcggggcga ctgggaacgc tcgccgcgca acttcagcag ccatcaggac gatcattatc
     2581 gaagctggcg cgaccgccag atgagggcgc tcgatcgtga ctatgaagat tattgccgcg
     2641 aacgcgagca gcagttccac caggacttcg acagctggcg caggaaccgt caaaaaccga
     2701 ctgaaggacg tgagcagcag caatcgcaag gcagccaagc gccttcggaa gaggtaatgg
     2761 aactgagcag tcgcgccgac gaggtactgc aacctcgtgc gactcccagc ccaaccgcgg
     2821 aagcaacgct tggcacgaac aacagcgaaa acagcgggac tggccgcgga acggattgag
     2881 gctcggcgag gcgctgctcg tcgggcggcg cctcatccaa tcagccttca atcagaactt
     2941 tcgtcccgat cttggtgacg ccgtaaagct tctcggcaaa tttcattgga agacgcatgc
     3001 aaccgtggct tgccgggtag ccgggattga cgcccccgtg aaacgcgatc ccataattgt
     3061 cgatgcgttc catccagggc attggcgcgt tgtcgtattt cttggagcga tagaaggggc
     3121 gcttctcgag aatggtccag ttgccgtaag gcgtgatgtg gcctgtcttg gcgcttgaca
     3181 ttgtcgatgc accgaggagc tcgtcgcccc ggtagacata ggtcatctgc gttaacagat
     3241 cgacgatgat ccgagtctcg ccagacggca ctgcgccggt tgcccagaca tattggcctg
     3301 gactaaggcc cactttcttg aacttggcga ccatgtccca gtgggccttg ggtgctgcgc
     3361 ccgcagtcca gtggtaggga attggctgcg ggccggagac cgtcggcttc cgcggcgaag
     3421 aagccgtctg ggcgcttgcg cgcggctttc caaacaggtg gattttcgcc tccgacatcg
     3481 ttccacacac cgttagaggg atggcaccga gcagcagcac tctaaagttt ctcatcgacc
     3541 ccccgaacgc tccacgcttt gcgacgtttg gcaatcgaga actcgggagc gcgtacaagt
     3601 caacccactg gtaaacggca agttactgtt aacagtgagt tttctgccaa ggaccaacaa
     3661 ggatcgaatc ttatgccagt cacttcactt gatgcgaaaa cggcactcgt cgttatcgat
     3721 ctgcaaaaag gaatcgccgc catggcgggc ccagcagcga tcgagaagcc ggtgcggaac
     3781 tctcggcgtt tggccgacgc ttttcgcagg cactcgcttc cagtggtgct ggtcaacgtc
     3841 gctggagcag cgcccgggcg gaccgagcag ccgcggtcaa ctgaggcacc cccatccaac
     3901 tggacggaac ttcttcctga ccttggtcaa cagccagagg acatatgcgt cacgaagaag
     3961 acctggggag cgttcgcgag caccgatctc gaacagcagt tgagcaatag gggagtgaca
     4021 caagtggtca tcactggtgt agcgacttcc attggcgtcg agtcgacggc gcgccaggcc
     4081 tatgaagcgg gcttcaacgt cacgcttgcc attgacgcga tggcggatct tcgccccgaa
     4141 gcgcacaatt cgagcatcag caatatcttc ccaaggctcg gcgagacggg aactactgac
     4201 gaaatcctag cgctgctgga gcgttcgtga gcgttgcact tcccgcggtt ttccggtccc
     4261 taagaagcta taactatcgc gtctggtcgc tcggcgctct agtctcgaac atcggcacct
     4321 ggatgcagcg cacggcgcag gactggcttg ttcttaccga gctaacgcac aacaaggcgt
     4381 cggcagtggg cgtcgtcatg gccctgcagt tcgggcctca gctgctcctg ctgccgctga
     4441 cgggacttgc cgcggacgtc ttcaacgagc gcaaactgct gttaattacg caggcgctga
     4501 tgggtctgct cgcacttgcc cttggagcac tgaccatcac tcacctggtt gagctctggc
     4561 acgtttacgt ttttgcattc cttttcggct gtgtctcggc atttgacgca ccggtccggc
     4621 agacctttgt cgccgaactc gtcggggatg aggatcttgt gaatgccgtt gcgctgaact
     4681 cgacttcttt caacgctgcc cgcatggcgg gcccggcaat tgctgctggg tcggcacggg
     4741 ctgggcgttc gttgccaacg gaatctcatt catcgctgta ctcatttctc tttcggcgct
     4801 gcgagtttca gaattgcacc agcgtgcgcg agcaaaacgg accaggggaa gccttactga
     4861 aggtttccgc tatgcctggg aacggcgcga ccttcgtatc acgctcatca tgctattcct
     4921 catcgggacg ttcggtctaa atttcccgat tttcatctca accatggcag tccgtgtttt
     4981 tcacaaggac gccggcggct atggcctgct ttcctcgatc atggcgatcg gaaccatgtc
     5041 cggcgcattg atcggagcgg gacgcgaccg cccacgattc cggtatctcc tcattggcgc
     5101 tgcgatattc gggcttggct gtgcgcttgc agcgatcgcg ccgctctact ggctcttcgg
     5161 cgccgcactc gtgatcgttg gcgcagctgc gctcacgttt atgaacacaa gcaacagtct
     5221 catgcagcta tcgaccgagc cctcgatgcg cggcagagtg atggcgatcc gtctcgcgat
     5281 cgcccttggc ggaacgccgg tcggcgcgcc tattgtgggc tgggttgcgg atcacttcgg
     5341 cccccgctgg tcaatagcag tcgccgcggc atccggcatc gcggcagccc tcatcgggac
     5401 ctatgctcgc cagcggctcg cggtccgaac cgttgaccgt tcacagacaa gcggcgagcc
     5461 gacaggcgga cagagccggg actggcaaag accgcacgaa caaccgccaa cgggagagtt
     5521 ctagtgcggc cttagcgggc ttcctggttt ccaggcaggc gcttgcggct gatcagccac
     5581 gcgctcgacc agttcgtaga agaagcggtt gaagtcggcg cagcccgcca gtccatgggt
     5641 tgttgaaggt catcctgcgg tttgtggtaa ccggtgcggt accattgccg atagatacgt
     5701 tcgctcgctg agcccggccg gtagccgaag acgaacgcgg tggcaggaat tcccgcctgc
     5761 aggaaaggcc actggtccga tcgctgcagc aggttccgtt ccggttccgg gtccttctgc
     5821 accgcgatgt cgaggttcgc ggcgacggcg cgcgcatcat cgccgaggct cgtatcatca
     5881 agcgcgtgaa cggttagcag ccgaagcgga aagatcggtc gcaactggtc cagattaatg
     5941 tcagccgcaa tgcgcgactt cggaatggtc atgtgctgga taaaccagcg ggatcccagc
     6001 agccccttct cctcgccggt ccacgccgca aaaaggactg gacgacgaaa tggcttccgt
     6061 tcccgccgct ccgcaagccg gatcagcaaa gcgacataag ccgcatcgtc cagagtccca
     6121 ttgtaaatcc ggtcgccctt gaccggctcg ccgtagccat agccatcgag gtgagccgaa
     6181 agaacgattg tctgatctgc gagccgcgga tcacttcctg gtaaataggc aagcacattt
     6241 ggcgatgaga ggtcgcgttc acggatcgtg aattgcgcac gcagtcgtga aggtaccgcg
     6301 aagctcgcga ggggcttacc cgcactcccc tcctcaacaa gcgccgcggc ttccccgccg
     6361 gcggcggcac cttcaagcac ttttccaaga gacgccgcat tgagagtcat gcgcacgaac
     6421 cggtcaggat tgccgcgagc gctcgcaagg gtcacagtgc gcgcataggc gtagggccaa
     6481 cgcggcggtt ctatcgtgaa tccgggatca gcgattgtga ggatcccaac tccgccagcc
     6541 gctcgaactg ccgattcccg ctgtgccgcg gtaggcaggc cagccttatg tgtgccatgg
     6601 caaatgacga tcttcccggc aacgttgccg agtgatgccg gttcacaata gccgccatag
     6661 aaaagcgatg cgtccagctg cgctggcatg ccttcggtcg gcgtcacggt aaggtcgtgc
     6721 aggaaaagca ggcgtcgctc gccgaccgtc actttcgcgc tcactattcg gatctcatgc
     6781 atcggcactc gttgaaacca tgtgccaccc tctcctgcgg ggctgagacc tgcgcttttg
     6841 aactttgacg caacaaggcg cgcagcgcgc tcatacgcgg gcgaaccggt atcgcggccc
     6901 tccattgcat cgttcgaaag ctgtgctgtc gttgcccacc aggagctggt gtcaggatcg
     6961 accttcggcg gcgccgcgct gatcgcgcac aacgcgctga gtacaagtaa ccacttcact
     7021 cccattcgat cgttcctggc ggctttgagg tatagtcata gacaacgcga ttgatgccct
     7081 ggacctcgtt cacaatgcgc gtcgcaactc ggcttaggaa agccgcgtcg aacggataaa
     7141 tgtcagcagt catcccgtcg agcgatgtta ccgcacgcaa tccgcaaacg tggtcatagg
     7201 ttcggtaatc gcccatgacg ccgacggttc ggacaggaag cagaactgca aaagcctgcc
     7261 aaatcgcatc atagagccca gcattgcgga tctcttcaag gtagatcgtg tccgcctttc
     7321 gaaggatgtc gcatttctcg cgagtaactt cccccggtat gcgaattgca agcccaggac
     7381 ctggaaacgg gtgccgtccg acgaaggcgt cgggcaagcc gagctcgcgt ccaagttcac
     7441 gcacttcgtc cttgaacagt tcgcgcaatg gctcgaccag tttcatgttc atgcgctcag
     7501 gaaggccgcc gacattgtgg tggctcttga ttgtcaccga cgggcc
//
LOCUS       DASRBJ010000294         2811 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_438124,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000294 DASRBJ010000000
VERSION     DASRBJ010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2811
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438124"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1664
                     /locus_tag="VE968_08125"
     CDS             <1..1664
                     /locus_tag="VE968_08125"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU51822.1"
                     /translation="QNEWTYDHARTEQTQALSDILAASSAAAIDFDDPAAVQQAVNAF
                     RTNNQIRRISIFRSNGRLIAGYRRGGGPIQPTIAAMAAADPHVIRVVSPVVQSGVRIG
                     TVVLDIDREAPYRRLSRYLVLAGLFVLAALVVASIGLAQAQLRRANRELENRAEALAQ
                     ANVLLEEQMDERAKAEDQLRQSQKMQALGQLTGGIAHDFNNQLTVIQGSADILTRPTV
                     PEEKRIRFAQAIVQAATNAASLTSQLLAFARRQPLKPERIDLNALVSDMRDMLDRTMG
                     ERIRIVTDLQNLPCRIEADRAQLQSAILNIASNARDAMRDGGTLTIRTRDAAQERGSP
                     AVALDIEDNGSGMAPEVVDRIFEPFFTTKETGSGTGLGLSQVYGFASQSGGEVRARSE
                     AGKGSTISLILPCVDSSTPAEPETRAAIAPELPPARILVVEDNEDVGNFAETLLSELG
                     HDVTRATSGEQALEISRQDRFDIVLSDVVMPGMGGLKLADILAQEQPSLPVILATGYS
                     EEIAERGGGGRTVILKPYRLATLAQALAEAMGQARRNERPDATTA"
     gene            complement(1806..2345)
                     /gene="nusG"
                     /locus_tag="VE968_08130"
     CDS             complement(1806..2345)
                     /gene="nusG"
                     /locus_tag="VE968_08130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HZU51823.1"
                     /translation="MSRWYIIHAYSGFENKVRDAIQSEAHRMGLDRFVEQIEVPTETI
                     TEVKRGKKVQSERKFMPGYVLAKLEMNDQVYHLVKNTPKVTGFLGPGGKPQPIPDTQA
                     ARMLDTKDEAAAAGPKAKVNVDYEIGDAVKVLDGPFATFNGVVEELDFDRGRVKVSVS
                     IFGRATPVELEFEQVERVK"
     gene            complement(2417..2617)
                     /gene="secE"
                     /locus_tag="VE968_08135"
     CDS             complement(2417..2617)
                     /gene="secE"
                     /locus_tag="VE968_08135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HZU51824.1"
                     /translation="MAKVSPGEFIRQVRVETGKVHWPTRKETIATAIMVIIMTLILAV
                     FFAGTDYFFTVMVRFLLGLLAK"
BASE COUNT          560 a          855 c          843 g          553 t
ORIGIN      
        1 tccagaacga atggacctac gatcacgcgc gtaccgagca gacacaggct ctttccgaca
       61 tactcgctgc ctcgtccgcg gccgcgatcg acttcgatga tccggccgcc gttcagcagg
      121 ccgtgaatgc ctttcggacc aacaaccaga tccgccgaat cagcattttt agaagcaacg
      181 gacgtctgat tgcgggctat cgccgaggtg gcggaccaat ccagccgacg atcgcggcaa
      241 tggcggcggc agacccgcac gtaatccggg tcgtttcgcc agttgtccag tcaggcgtgc
      301 gcatcggcac cgttgtgctc gatatcgatc gcgaggcacc ttaccgacgc ttgtcccgct
      361 accttgtgct cgctgggctg ttcgtgctcg ccgcactcgt ggttgcaagc atcggccttg
      421 cccaagcgca acttcgtcgc gccaaccgcg aacttgaaaa tcgcgcggaa gcgcttgccc
      481 aagccaatgt cctccttgaa gagcagatgg acgagcgcgc gaaagccgag gatcagctcc
      541 gccagagcca gaaaatgcag gctctcggcc agctgacggg cggcattgcg catgacttca
      601 acaatcagct gacggtgatc cagggatcgg ccgacatact gacaaggccc acggtcccgg
      661 aggaaaagcg cattcgattt gcgcaggcga tcgttcaggc cgcgacgaac gccgcatcgc
      721 tgacgagcca gctgctcgcc tttgctcgtc gccagccgct gaaacccgag cgcatcgatc
      781 tcaacgcgct tgtcagcgac atgcgcgaca tgcttgaccg aacaatgggc gagcgcatca
      841 ggatcgtcac ggatcttcaa aatcttccct gccgaataga ggctgaccgc gcgcagctcc
      901 agtcggcgat tctcaacatc gcatccaacg cgcgcgatgc gatgcgcgat ggaggaacgc
      961 tgacgatccg aacgcgtgac gcggcccaag agcggggatc gcccgctgtc gcactcgata
     1021 tcgaggacaa tgggagcgga atggcgcccg aagtggtcga ccggattttt gaacccttct
     1081 tcacgaccaa ggagaccggc tcaggtaccg ggcttggcct tagccaagtc tatggatttg
     1141 cgagccagtc tggtggcgag gtccgcgcgc gaagcgaagc cggcaaaggg agcacgatca
     1201 gtttgatcct gccttgcgtc gattcatcca cgcccgccga acctgaaacg cgcgccgcga
     1261 tcgcgccgga attgccgcca gcgcgaattc tggtcgtcga ggacaatgag gatgtcggaa
     1321 actttgccga gacgctgctt tccgaactgg gtcatgatgt gacgcgcgcc acctcgggcg
     1381 agcaggcttt ggaaatttct cgacaggacc gattcgacat cgttttgagc gacgtcgtga
     1441 tgcccggcat ggggggactg aagcttgccg atatcctcgc gcaggaacag ccttctctgc
     1501 cggtcattct cgcaacgggc tatagcgagg agattgccga gcggggtggt ggcgggcgca
     1561 ccgtcatcct caagccatac cgactggcaa ctctcgccca ggcgcttgcc gaggcgatgg
     1621 gccaagcccg tcgaaacgag agaccggacg cgacgaccgc ataaacccga tcaatccggg
     1681 agctttctcg cctcccgtcc ggggctcatt gcaaggagcg ctttcagcgc ggcggtcgtg
     1741 tcgagcgcaa caggcccttt caggcaagcg gcggcagcgc cattttgctc gggctttggg
     1801 cggaactatt tgactcgttc gacttgctca aattcgagtt cgactggcgt tgcgcgcccg
     1861 aagatcgaaa ccgagacctt cacgcgacca cgatcgaagt cgagttcctc gacgacgccg
     1921 ttgaacgtcg cgaacggacc atcgagcacc tttaccgcgt cgccgatctc gtaatcgacg
     1981 ttgactttgg cctttggtcc ggccgctgcc gcttcgtcct ttgtatcaag catgcgcgcg
     2041 gcctgcgtgt ccggaatggg ctgcggtttg ccgccagggc caaggaagcc ggtcaccttc
     2101 ggcgtgttct tcacgaggtg atagacctgg tcgttcatct cgagcttcgc gagcacgtac
     2161 cccggcatga actttcgctc ggactgaacc ttcttgccgc gcttgacttc ggtgatcgtc
     2221 tcggtcggca cctcgatctg ttcaacgaag cgatcaaggc ccattcggtg tgcctcgctt
     2281 tggatcgcat cgcgaacctt gttctcgaaa ccggaatatg cgtggatgat gtaccagcgg
     2341 gacatgggaa ttacctgttc aatcctgtgc tcttcgcccg ttacgcgacg aagatgagtg
     2401 gagggtcatt gcgctttcac ttggcgagca agccaagaag gaagcgaacc atgacggtga
     2461 agaaatagtc cgtaccggcg aagaacacgg caaggatcaa ggtcatgatg atgaccatga
     2521 tcgccgtcgc gatcgtctcc ttgcgcgtcg gccaatggac ctttccggtc tcgacccgca
     2581 cctgacggat aaattcgcct ggagaaactt tggccactac ttgggtcgct tcttctcgtt
     2641 cgttgataga aaagcgcccc gcgaggcctt gcatggccgg cggggctggc gctcacttag
     2701 ccgttgaatg gccggtcttc aaggttcgct cgaaaggggc aagccagttt ttggcaggag
     2761 tggagggact cgaacccacg gccctcggtt ttggagaccg atgctctacc a
//
LOCUS       DASRBJ010000295         8617 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_707642,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000295 DASRBJ010000000
VERSION     DASRBJ010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8617
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_707642"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..536)
                     /gene="frr"
                     /locus_tag="VE968_08140"
     CDS             complement(<1..536)
                     /gene="frr"
                     /locus_tag="VE968_08140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HZU51825.1"
                     /translation="MTTTVSTADLKRRMQGALDALKHDLAGLRTGRASTALLDPVHVE
                     VYGSNMPLNQVATVSTPEARMLSVQVWDRSNVGPVEKAIRSAGLGLNPITDGQVIRLP
                     IPELTEERRRELAKLVGQYAEKARVAVRNVRRDGMDHLKTDEKKHEISEDERKRLEHE
                     VQKLTDDTIKEIDEAAAT"
     gene            complement(539..1261)
                     /gene="pyrH"
                     /locus_tag="VE968_08145"
                     /pseudo
     CDS             complement(539..1261)
                     /gene="pyrH"
                     /locus_tag="VE968_08145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833319.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
     gene            complement(1353..2297)
                     /gene="tsf"
                     /locus_tag="VE968_08150"
     CDS             complement(1353..2297)
                     /gene="tsf"
                     /locus_tag="VE968_08150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019051687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HZU51826.1"
                     /translation="MAEITAKSVKELRERTGAGMMDCKKALEETAGDMEAAIDWLRAK
                     GLSAAAKKAGRTAADGLVGVAVAENRGAIVEVNSETDFVAKNEIFQEFVREVANLALQ
                     HGSDVESLGAAQYPGGGTVQEKLTDNIAKIGENQSLRRAAVLEVNEGAVVSYVHNQVA
                     QGLGKIGVLVALESSAPVDTLTQLGKQIAMHVAAAHPLALTADDLDPALVERERAIAM
                     EKAKESGKPQNIIEKMVEGGLMKFRKENALTSQLFVMDNKTPVAEVVASAAKDAGTGI
                     ALIGFVRFQLGEGIEKKQEDFAAEVAAAAGTAKPEPVA"
     gene            complement(2387..3142)
                     /gene="rpsB"
                     /locus_tag="VE968_08155"
     CDS             complement(2387..3142)
                     /gene="rpsB"
                     /locus_tag="VE968_08155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HZU51827.1"
                     /translation="MAATVVTMQQLLEAGAHFGHQTHRWNPKMKPYIFGDRNGVHIID
                     LSQTVPLFARALDFIQQTVSRGGKVLFVGTKRQAQDAIADAARSSGQHFVNHRWLGGM
                     LTNWKTISNSIKRLKSLEEQLSGDTTGLTKKEVLQLTRERDKLEKSLGGIRDMGGLPD
                     IMFVVDTNKEELAIKEANTLGIPVVAILDSNSDPSGIAFPVPGNDDASRAIRLYTDAI
                     AQAVGEGRTGNAAARGRDIGEMAEPPVEAALEA"
     gene            3346..3567
                     /locus_tag="VE968_08160"
     CDS             3346..3567
                     /locus_tag="VE968_08160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51828.1"
                     /translation="MTIAILGTLPFIATLWLLVAIGAAMVEESGAKIAAALKGKTLSE
                     AVPTTAQRVRIRPKERSATSAIVPLRAAA"
     gene            complement(3530..4297)
                     /locus_tag="VE968_08165"
     CDS             complement(3530..4297)
                     /locus_tag="VE968_08165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylcholine/phosphatidylserine synthase"
                     /protein_id="HZU51829.1"
                     /translation="MIDDRDPRRIPFRAMIPNAVTALALCFGLTGVSLAIGNHWEKAL
                     GSVILAGVLDGLDGRIARLLRAQSKFGAELDSLSDNIAFGTAPALILFLWSLRAEPRF
                     GWLAALALAVCCALRLARFNARLDAAEQPHKSAGFNTGVPAPAGAGLAFVPIYLWLIS
                     GDERFRSWPAVMAWTVFIAALMISSLPTYSWASIRIRRSWRMFALAALTLFGASLLVA
                     PWPTLLALAAVYLLMIPLAYASYRRVMRRRATARSRL"
     gene            complement(4294..5046)
                     /locus_tag="VE968_08170"
     CDS             complement(4294..5046)
                     /locus_tag="VE968_08170"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HZU51830.1"
                     /translation="MPSSMSSLDKHDSPLPTTTVKWRFPSIHPEGRKYTVIAAGITLL
                     AFLLHWSFIAWLLVGATIWVGTFFRDPVRTTPRGDKLIVSPADGLITMIARVPPPPEL
                     RGPDALPDGDYTRVSIFMSVFDVHINRAPITGRVKRIAYVPGKFVNADLDKASEDNER
                     QHILIEGSDGLRIGFTQIAGLVARRILSFVREGDVVEAGQRVGLIRFGSRVDVYLPSG
                     TSPKVLLGQRSIAGETILAEIGTDVALTGLSQ"
     gene            5139..6368
                     /locus_tag="VE968_08175"
     CDS             5139..6368
                     /locus_tag="VE968_08175"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006102 - isocitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HZU51831.1"
                     /translation="MSKIKVKNPVVELDGDEMTRIIWQWIRERLIQPYLDVELLYYDL
                     SIQNRDSTDDQVTVDAANAIKKHGVGVKCATITPDEARVEEFGLKKMWKSPNGTIRNI
                     LGGCIFREPIVISNVPRLIPGWTDPIVVGRHAFGDQYRATDFLVPGPGKLTMTFVGDN
                     GEKLEFDVFDFPGSGVAMGMYNLDASIRDFAHACFNYSLGRRWPLYLSTKNTILKAYD
                     GRFKDIFQEIYDKEYKAKFQAAGIEYQHRLIDDMVASALKWSGKFVWACKNYDGDVQS
                     DQVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRMHQQGKATSTNPIASIFAW
                     TGGLKYRGKFDDTPDVVRFAETLERVCIETVEAGEMTKDLAILVGPEQAWMTTEQFFE
                     AIVRNLETAMAEEAQPA"
     gene            6626..8398
                     /locus_tag="VE968_08180"
     CDS             6626..8398
                     /locus_tag="VE968_08180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HZU51832.1"
                     /translation="MAGELGGSGLKDALVILGAAGIVIPAFARLKVSPIIGFILVGIA
                     AGPYALGELAQKHRSLEIVSISDPAAIEPFAEFGIILLLFSAGLHISFRRLRSMAPTV
                     LGVGSAELIACAILISAGLLLTGSTLSTAVALGLALAMSSTSLVLPISGTDGPVGRTA
                     FAMLMFEDLALVPILFFIELIGGRAESSALARTAALGLVVVIAMLFFGRVFLAGLFAQ
                     AARTKNPELFLATSLLTVILASIATREVGLSPLLGALIAGILIAETDYHAEVEAITKP
                     LAGLALAIFLITVGMRIDVRAVAHQWALIAGAGAALLVAKAAITAALVRLSGIRPSTA
                     VETGVLMASPSETSLIVLATAAAAGIVSDADSAFWTTVTAVGLTITPLLAAAGKMMAS
                     RLAEPQLATDPVDALARNRTVIFGFGRVGRMIADMLIAHDRPYLAIDSDVDTVREARK
                     LNYDVLFGDVRRTELSDKLHLGHAAALVLTMDDPVLVAQLAARVRGWVPSLPIIARAR
                     DTAHAAQLYKLGVTDAVLETLEASLQLAEAVLVDVGAPVGPVIASIHEKRSELRAKIM
                     QEGQMEQEPRLGRRRLRDRTQAPE"
BASE COUNT         1699 a         2605 c         2539 g         1774 t
ORIGIN      
        1 ttggttgccg ccgcttcgtc gatttccttg atcgtgtcgt cggttagctt ttgaacctcg
       61 tgctcgagac gcttgcgctc atcttcgctg atctcgtgct ttttctcgtc agtcttgaga
      121 tggtccattc catcccgccg aacgttgcga acggcaaccc tcgccttttc ggcatattgc
      181 ccgacgagct ttgcaagctc gcggcgcctt tcctcggtaa gttcggggat cggcaaccgg
      241 atcacctgtc cgtcggtaat cgggttgagc ccaagcccgg cagaccggat ggccttttcg
      301 accggaccga cgttcgatcg gtcccagacc tggaccgaga gcatgcgcgc ctcgggcgtg
      361 gagacggtcg cgacctggtt gagcggcatg ttcgatccat agacttcaac atgaaccgga
      421 tcgagcaagg ccgtcgaggc gcgcccggtc cgaaggccag cgaggtcgtg cttcagggca
      481 tcgagcgcac cctgcattcg acgcttgagg tcggcggtac tgacggtggt ggtcattcct
      541 actctccatt ctcaacgaca gtcgcggtcc cgcgtcctgc caaaacttcg gccagattgc
      601 cggattggcg gatgttgaaa acgacgatcg ggatgttgtt gtcgcggcaa agtgcgacgg
      661 cagcagcgtc catcacttta agattgtcgc tcagcactcg cccgaaggtc acgttgtcgt
      721 agcgccgagc atcagcaact ttcttgggat cggccgtgta gatcccgtcg acgcttgtgc
      781 ctttgaaaag tgcgtcacag cccatttccg cagcacgcag ggcggctgcg gtatccgtcg
      841 tgaaaaacgg atttccagtc cctgccgcaa ataggacgat gcgccccttt tagaggtggc
      901 gaagtgcgcg ccggcgaatg tagggctccg aaacgctcgc catcgggatt gccgacagca
      961 cgcgggtgtc gacgccgagc ttctcgagcg cattctgaag agcgagcgcg ttcatgaccg
     1021 tcgccagcat tcccatgtaa tccgctgtcg cgcggtcgaa ccccttggca gcagcagcca
     1081 ttccccggaa gatgttgccg ccacccacga caagacagag ctcgtgcccg aggcctttgg
     1141 cggccgcgat ctcctcggca agtccggcaa ccgccactgg atcaatgcca aattgcccct
     1201 ggcccatgag cgcctcgccc gaaagcttca ggaggatgcg gttgaagcgc ggtcggctca
     1261 tgcgattgga agtcccctag aagcagcaaa ggcggccccg cctttatggc cgagccgccc
     1321 cgttgccaac tgccaagcag tattcgtcct gcctaagcta cgggctccgg ctttgctgtt
     1381 ccggcggccg cagcgacttc cgccgcaaag tcttcctgct tcttctcgat accctcgccg
     1441 agctggaacc ggacaaagcc gatcagcgca attcccgtgc cggcatcttt tgcagccgac
     1501 gcaacgactt cagcgacggg cgtcttgttg tccatcacga acagctgtga cgtcagggca
     1561 ttttccttgc ggaatttcat cagtccgcct tcgaccatct tctcgatgat gttctggggc
     1621 tttccgctct ctttggcttt ttccatcgcg atcgcccgct cacgctcgac gagtgcggga
     1681 tcgagatcgt cggcagtgag cgcaagcggg tgcgcggctg caacgtgcat cgcaatctgc
     1741 ttcccgagtt gcgtcagtgt atcgactgga gcactgctct cgagagcaac gagaacacca
     1801 atctttccaa ggccctgcgc cacctggtta tgaacatagg acacgacggc gccctcattc
     1861 acttcgagca cggccgctcg ccgaagcgac tggttttcgc cgatcttcgc gatattgtcg
     1921 gtaagcttct cctggacggt gccgccaccc ggatattgcg ccgcgccaag gctttcgaca
     1981 tcggaaccat gctgtagcgc gaggttcgct acctcgcgga cgaactcctg aaagatctcg
     2041 ttcttggcaa cgaagtcggt ttcggaatta acctcgacga tcgcaccgcg gttctcggca
     2101 accgcgactc caacgagacc gtcggcagca gttcggcccg ccttcttcgc agccgccgaa
     2161 agacccttgg cacgaagcca atcaatcgcc gcttccatgt ccccggcggt ttcctcgagc
     2221 gccttcttac agtccatcat gccggcgccc gtgcgctcgc gcagttcctt caccgatttg
     2281 gccgtgatct cagccatcat ttcttccttc cttgtgcgct cactagcaag gagcgcattt
     2341 cagctttcaa tataggaatg tcgccctgcc actgcaggcg ttcgacttag gcttcgagcg
     2401 ccgcttctac tggcggctcg gccatttcgc cgatgtcccg gccacgcgcc gcggcattgc
     2461 cggtgcgacc ctcgccgacg gcctgcgcga tggcgtccgt gtacaggcga attgctcggc
     2521 tcgcatcgtc attaccggga accgggaacg cgattccgct ggggtcgctg ttggaatcga
     2581 ggatcgcaac gacgggaatg ccaagcgtgt tcgcttcctt gatcgcaagc tcttccttgt
     2641 tcgtatccac cacgaacatg atgtcgggaa gaccacccat gtcgcgaatt ccgccaagac
     2701 tcttttcaag cttgtcgcgc tcacgggtga gttggagcac ttccttcttg gtgagaccag
     2761 tcgtgtcgcc cgaaagctgc tcctcgaggc tcttcaggcg cttgatcgag ttcgagatgg
     2821 ttttccaatt ggtcagcatg ccgccgagcc agcgatgatt gacgaaatgc tggcccgatg
     2881 atcgcgcggc gtccgcgatc gcatcctgag cctggcgctt ggtgccaacg aaaagcacct
     2941 tgcccccacg gctgacggtc tgctggatga agtccaaagc gcgcgcaaac agcggaacgg
     3001 tctgcgacag gtcaataatg tgaaccccgt tgcgatcgcc gaagatatac ggcttcatct
     3061 tggggttcca acggtgggtc tggtggccga aatgagctcc ggcctcgagc aattgctgca
     3121 tggtgacgac cgtggccgcc atagtttttc tccttccggt tctgcctcag cgaagccgaa
     3181 tgaccagcct ttcggctggc accggtatgt aagctccgcc tgtgggatgc gcgggcaagt
     3241 agacgaactc ggctccagtt tcaagcgatt ggaaaggctt aggtgtcgac ttgacaagtg
     3301 agaacataag gtgaacatat caccgatcaa gaggagactg aacccgtgac gatcgcaata
     3361 ctgggcaccc ttcccttcat tgcaaccctg tggcttctcg tcgccattgg tgcggcaatg
     3421 gtcgaagaaa gtggcgcgaa gattgccgct gcgctcaagg gcaagacatt gagcgaggca
     3481 gtgccaacca ctgctcaacg cgttcgaatc cggccgaaag agcgttcagc tacaagcgcg
     3541 atcgtgccgt tgcgcgccgc cgcatgaccc gccgatagct cgcgtaagca agagggatca
     3601 tcaggaggta aactgccgca agggcgagca aggtgggcca cggcgcaacc agcagcgaag
     3661 ctccaaacag cgtcaaggct gcaagtgcga acatccgcca cgagcggcga atgcggatgc
     3721 ttgcccagct gtaagttgga aggctcgaaa tcatgagtgc tgcgatgaac acagtccagg
     3781 ccatgactgc tggccatgag cgaaatcgct cgtcaccact gataagccac aagtagatcg
     3841 gcacgaacgc gagaccggcg cccgccggcg cgggaacgcc ggtgttgaac ccggcggact
     3901 tgtgcggttg ttccgcggcg tcgagccgcg cgttgaagcg cgccaggcga agcgcacagc
     3961 agacagcgag cgcgagtgcc gcaagccagc caaagcgcgg ttccgcgcgc agcgaccaaa
     4021 gaaacaagat cagtgctggc gcggtgccga aggcaatatt gtcgcttaga gagtcgagtt
     4081 cggcaccgaa tttactctgc gcgcgcaaca ggcgcgcgat gcgaccgtcg agtccatcca
     4141 gaactcccgc aaggataacg gagccaagcg ccttctccca gtgattgcca atggcgaggc
     4201 tgactccggt gagcccaaag cagagagcaa gcgcagtgac ggcatttgga atcatcgctc
     4261 ggaacgggat ccgccgcgga tcccgatcgt cgatcattgg ctgaggcccg tgagggcaac
     4321 atccgtgccg atttcggcaa gaattgtctc gccggcgatg gaacgctgcc cgagaagcac
     4381 cttgggtgac gtcccagaag gaagatagac gtcaacgcgg cttccgaagc ggatcaaccc
     4441 aaccctttgc cccgcttcaa ccacatcgcc ttcacgaacg aacgacagaa ttcttcttgc
     4501 gacaaggcca gcgatttgcg tgaagccgat tcgcaggccg tcggatcctt caatcaatat
     4561 gtgctgccgc tcattgtctt cgctggcctt gtcgaggtct gcattgacga acttgcctgg
     4621 tacataggca attcgcttaa cgcggccggt gatcggtgcg cgattaatat gcacgtcgaa
     4681 cacgctcatg aaaatcgaga cgcgcgtgta atcgccgtcc ggcagagcat ccgggccgcg
     4741 cagttccggc ggcggaggaa ctcgggcaat catcgtaatt agcccgtcgg cgggcgaaac
     4801 gatgagcttg tcaccgcgcg gtgtcgtgcg gactggatcg cgaaaaaaag tcccaaccca
     4861 gatcgtcgct ccgaccagaa gccaagcgat gaagctccag tggagaagga aggcgagcaa
     4921 cgtaatcccg gcggcgatca ccgtgtattt gcggccctcg ggatggatcg agggaaagcg
     4981 ccatttgacg gtagtcgtcg gaagcgggct atcgtgcttg tcgagcgaag acatggaaga
     5041 aggcattaat ggcgctgagc cgccggcaca acgctgcggt tgcgcgcgtt atcctcgcca
     5101 tctaaggcgc cgccaaattt cagatgtcgg gaaagcgcat gtccaagata aaggtgaaaa
     5161 atccggtcgt cgaactcgac ggcgacgaga tgacccgaat aatttggcag tggatcagag
     5221 aacgcctgat tcagccatat ctcgatgtcg aacttctcta ttacgatctt tcgatccaga
     5281 accgcgattc gaccgacgat caggtgacgg tcgatgctgc caatgcaatc aagaagcatg
     5341 gcgtgggcgt caagtgcgcg accattacgc ccgacgaagc tcgggtcgag gagttcggcc
     5401 tcaagaagat gtggaagtct ccgaatggga ccatccgcaa tatccttggc ggctgcatct
     5461 tccgtgagcc gatcgtcatt tcaaacgtgc cgcgtcttat ccccggctgg acggatccca
     5521 tcgtcgttgg acgacatgcg ttcggcgacc agtatcgcgc gaccgatttc ctcgttcccg
     5581 gcccgggcaa gcttacgatg accttcgttg gcgacaatgg cgaaaagctc gaattcgatg
     5641 tgttcgactt tcccggatcc ggggtcgcaa tgggcatgta caatctcgac gcgtcgatcc
     5701 gggatttcgc tcacgcctgc ttcaactaca gcctgggacg ccgctggccg ctctatctct
     5761 cgaccaagaa tacgatcctc aaggcctatg acgggcgctt caaggatata ttccaggaga
     5821 tttatgacaa ggaatacaag gcgaaattcc aggccgctgg catcgaatat cagcatcgac
     5881 tgatcgatga catggttgcc tcggcactca agtggagcgg caagtttgtc tgggcttgca
     5941 agaactatga cggtgatgtc cagtctgacc aggtcgctca gggctttgga tctcttggat
     6001 tgatgacctc ggtcttgatg acgcccgatg ggaaaaccgt cgaagcagaa gccgcgcatg
     6061 gtacggtcac gcgccactac cgtatgcatc agcagggcaa ggcgacgtcg acgaacccga
     6121 ttgcctccat tttcgcgtgg accggcggcc tcaagtaccg cggcaagttc gacgacacgc
     6181 cggatgtcgt ccgttttgcc gagacactcg agcgagtgtg catcgagacg gtcgaggcgg
     6241 gtgaaatgac caaggatctg gcgatccttg ttggccccga gcaagcttgg atgacgacgg
     6301 agcagttctt cgaggcaatc gttcgaaatc tcgaaacagc aatggcggaa gaagcgcagc
     6361 cggcctgagc ccttccgacg caaagcgcca ccgtcgacca gggggtggtc gcgcataatt
     6421 gggccgctcg ctcgcgtgcg ccacgtgcgg tgtcgttcac gtgccgcgcc cggtcatgac
     6481 gtcatgccgc cagcgacgat cgctttgtcg tcatcgtatt ccagcggaca atgtcgccgc
     6541 gacgtgcgcc cttcccgagc ctcgattctt ttttcatcga aagcgtcggg catgacagca
     6601 gcgccggtac ctgctctaag ggcccatggc tggcgaactg ggcggatcgg ggctcaagga
     6661 cgcgctggta attctcggcg cggccggcat tgtcattccg gcattcgcgc gactgaaggt
     6721 ctcacccatt atcgggttca tcctggtcgg cattgctgcc gggccgtacg cgctcggcga
     6781 actcgcgcaa aagcatcgct cgcttgagat tgtctcgatc agcgatcccg cggcaataga
     6841 gccgtttgcc gaattcggga tcatcctcct tctattttcg gctggcctac acatcagctt
     6901 ccgacggtta agaagcatgg ctccgaccgt gctcggtgtt ggaagcgcgg agctcattgc
     6961 ctgcgcaatc ctcatcagcg ccggattgct actgaccggc tcgaccctgt ccaccgccgt
     7021 tgcgctcggt ctcgccttgg ccatgtcatc aacatccttg gttctaccga tttccgggac
     7081 cgacgggccg gtcgggcgaa cggcctttgc aatgttgatg ttcgaggatc tcgccctcgt
     7141 tccgattttg ttcttcattg agctgattgg tggacgagcc gaatccagcg cgcttgcaag
     7201 gacggcggct ctcggtcttg tcgtcgtaat cgcaatgctg ttttttggtc gcgtgttcct
     7261 tgccggccta tttgcacagg ccgcccgcac gaagaaccct gaactctttc tcgcaacaag
     7321 tcttctgacg gtgatcctcg caagcattgc gacacgagag gttggtcttt cgcccctgct
     7381 cggcgccctc attgcaggca tcctcattgc tgaaaccgat tatcacgccg aggtggaggc
     7441 aattacaaag ccactcgccg gccttgccct cgcgattttc ctcatcacgg tcggaatgcg
     7501 catcgacgtt cgagcagtcg cgcatcagtg ggccttgatc gctggcgctg gagctgcgct
     7561 attggttgcc aaagccgcga taactgcggc gcttgtccgc ttgagcggca ttcgtccgtc
     7621 gacggccgtc gagactggag tcctgatggc gagtccgtcg gaaaccagcc tcatcgtcct
     7681 agcgacggcg gcggccgccg gtatcgtctc ggacgccgat tcggcgttct ggacaaccgt
     7741 caccgctgtt ggcctcacaa tcacgccatt gctcgcggcc gcgggcaaga tgatggctag
     7801 ccgcctggcc gagcctcagt tggcaacgga cccggttgat gcgctagcaa ggaaccgaac
     7861 cgttatcttc ggtttcggcc gcgtcggtcg gatgatcgcc gacatgttga ttgcgcatga
     7921 tcggccctat cttgcgatcg acagcgacgt cgacaccgtt cgcgaagcgc ggaaactcaa
     7981 ttatgacgtg ttgttcggcg acgtccggcg aacagaactt tccgacaaat tgcatctcgg
     8041 tcacgctgcc gccctcgtgc tgacaatgga tgaccccgtt ctcgtcgcac agcttgcagc
     8101 gcgcgtacgc ggctgggtcc caagcctccc catcattgct cgcgcccgcg acacggccca
     8161 tgcagcgcag ctttacaagc tcggcgttac cgatgcggtt ctcgaaaccc tcgaggcctc
     8221 gctacaactt gccgaggccg tactggtcga tgtgggcgcg ccggttggcc cggtgattgc
     8281 gtcaattcac gaaaagcgga gcgagcttcg cgcgaagatc atgcaagaag gacaaatgga
     8341 gcaggagccg cggctcggcc ggcggcgact gcgcgaccga actcaagcgc cggagtaagg
     8401 ctcgaagcgg agaatgccgg caagatacgt cttgtgttca gcattgtcgc tcggatggcg
     8461 attgccatca ttgaccggaa cttcgcggaa atcgaagggc gacacaccct caagacaggc
     8521 gacattcacg cccagttcgc cgggattcga tcgacgctgg tggtgcgtgt aaatcccgca
     8581 cgtcttgcaa aagtgatggt ttgcgacgcg ggtgttg
//
LOCUS       DASRBJ010000296         8529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_601438,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000296 DASRBJ010000000
VERSION     DASRBJ010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8529
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_601438"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..823)
                     /locus_tag="VE968_08185"
     CDS             complement(<1..823)
                     /locus_tag="VE968_08185"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HZU51833.1"
                     /translation="MIGKATEDGFELAVIGDGIVGIACALELQRRGVATTMIAPSDHP
                     RGASIGNAGHIATEQVEPLASAATIRSLPARLSFRGGPVALPLRDIAEWLPFSLRFVS
                     AARRDRLARGTMILTQMLSTALPAWRRLAAEAGAGQLLREDGHYIVWESKATASSGRA
                     HWERANCGEARWRAATKAEVADLQRLVNVPIEGAIRFSGSGQVTDLDTLHKALRLRFV
                     ELGGTIRHAVATRLNPNDKTTVITLADGSALRASKVVVAAGVDSRKLLEPLGMTVP"
     gene            complement(895..1815)
                     /locus_tag="VE968_08190"
     CDS             complement(895..1815)
                     /locus_tag="VE968_08190"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HZU51834.1"
                     /translation="MTASRALWRGVYPAATTQFTTDLAVDFDATKRVQAALVDDGVDG
                     LVLLGTCGENNSLEADEKRTILEGAVETIGGRVPLVAGVSELTTKRAIEYVRDAEKLG
                     VDAFMVLPCMVYVPTVEELVEHFRRVAEATSLPIMLYNNPPAYRVNIDFATLEALSNL
                     PNVVAIKEAAPDPRRVTDIINRFGDRFAVMAGLDDVALEGLMLGATGWVSGLTSAFPV
                     ESVRLVKAANEGKWEEARAIYRWFMPLLHLDAEHDLVQSIKLAEMIMGRGTEHVRMPR
                     MPLTGQRRSDVIRWVERCKATQPSRQLESA"
     gene            1938..3017
                     /locus_tag="VE968_08195"
     CDS             1938..3017
                     /locus_tag="VE968_08195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ldh family oxidoreductase"
                     /protein_id="HZU51835.1"
                     /translation="MVQLRFDEIEALCRSVLRNHGLSRDHVEAVTRTILAAERDECAS
                     HGVYRLIVCAATLAKGAVVPDAVPEIDDPAPAIVRVDARGGYAQLAFERALPLLVEKA
                     RTSGIAALAINNCVHFAALWPEVEAVVDHGLVALACTPSHAWVAPAGGSKGLFGTNPL
                     AFGWPRPGPFPFVFDFATSAVARGEIELHRRAGTPIPIGWAVDEDGKPTIDPAAALEG
                     AMLTFGGHKGSALAAMIELIAGPLIGDLTSAESMEADAGRGGSPLGGELIVAIDPRGF
                     LGQNVAHHLERAEKLFEGMTAQGARLPSSRRFAARQRSLARGGVCIKRSLLEDLERLR
                     IAIQPNGASIEGEGSVNQAAPDSVT"
     gene            complement(2948..4147)
                     /locus_tag="VE968_08200"
     CDS             complement(2948..4147)
                     /locus_tag="VE968_08200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017672327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HZU51836.1"
                     /translation="MRGIGGSTAERELQDIRPWRVPAASIERNEIAERIEKARRFTRD
                     IGSGALLIGAGPSLRYFTSVPWKASERLVAMLLPVRGVPIVIAPKFELGTLEASLSIE
                     ADVRLWEEDESPSEVVAGALREHGVGAVAVDPAMAFMFVERIAKAAPSMSMVGASPVV
                     DRCRMYKSPAELALIQQAMSMTLEIQRRVARILHSGIRPSEVRRFLDEAHRAIGAPSG
                     SEFALVQFGRASAYPHGLPGDCPLSEGDIVLIDTGCVIEGYHSDITRTYVFGEPTDEQ
                     RRIWMLEHQAQAAAFEAVQPGRPCEEVDAAARATLEAAGLGPDYQLPGLPHRTGHGIG
                     LSIHEPAYLVRGDRTPLMPGMCFSNEPMIVIPDRFGVRLEDHLYVTESGAAWFTDPSP
                     SIDAPFG"
     gene            4346..5344
                     /locus_tag="VE968_08205"
     CDS             4346..5344
                     /locus_tag="VE968_08205"
                     /EC_number="5.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyproline epimerase"
                     /protein_id="HZU51837.1"
                     /translation="MRHTFFCIDGHTAGNPVRLVAGGAPLLRGASMLDRRQDFLDRFD
                     WIRTGLCFEPRGHDMMSGGFLYPPTAPDSDVGILFIETSGCLPMCGHGTIGIITFGLE
                     NGLITPSMPGKLKVEVPAGRIDVEYGQEGERVSWVRIRNVASYLAYEGLEIDVPGFGR
                     LTIDIAYGGNFYAIIEPQGPYTGLDDLGAARIIELSRLVRSLVQEAVNPVHPTDPRIQ
                     GVRHVMWTDKPTGEGADGRNAVFYGERAIDRSPCGTGTSARLAHLVAKGRLKPGDRFV
                     HESFIGSRFTGRVEEAVELGGKPAIIPSIEGSAIATGFNTIWIDRQDPFWSGFSVV"
     gene            5378..6841
                     /locus_tag="VE968_08210"
     CDS             5378..6841
                     /locus_tag="VE968_08210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HZU51838.1"
                     /translation="MSFFGPLKPIEAHAHDSQHSLRRTLSWPHLVALGVGAIVGTGIY
                     TLTGVGAERAGPAVVLSFAVAGAVCACAALAYAELATLIPTAGSAYTYTYSVAGETIA
                     WIVGWSLILEYSLACSTVAVGWSGYLVGWLHAAGLNLPHALLAGPHLGGIINLPAVLV
                     SLTIAGMLMAGTRESATLNIVLVTIKLTALGAFVLFTAPAFHAANFHPFMPYGFASHE
                     AAGETRGVMAAAAIVFFAFYGFDAVATSAEEARDPGRDLTIGIVGSMLLCTTIYILVA
                     ICAVGAMPYVALGASPEPLALVLRTLDHPLVAYLVGGAALVALPSVILVMMYGQSRIF
                     FVMARDGLLPRVLSSVSKRTGSPVLVTAVTGLFVAAAAGFFSLSEIAELANAGTLLAF
                     IAVATCMMTLRRRAPDLPRVFRCPAPMLVGSLAVIGCIYLMISLPEKTLIRFALWNAI
                     GLVGYFAYGRRHSLLARVAETGLGSRSAPADRSSSAL"
     gene            7035..>8529
                     /locus_tag="VE968_08215"
     CDS             7035..>8529
                     /locus_tag="VE968_08215"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HZU51839.1"
                     /translation="MSFESVVEGKPRRIAIAALLTTSALLTPVAAVGQIAPPSTTSSG
                     ATVQDPEAHPTAAQPGLPAGTPNDSEIVVTALKRATSVERTPLSITAVSADTLNRQNI
                     TDTNALARIAPSLVINENSNGGSRVIIRNLYATGEPLVGLYYDEVPLSGTGGVSNDAG
                     GTLPGIRLFDVERVEVLRGPQGTLYGASSMGGTIRVIFAKPNLKYLSGAVDGQLTSSA
                     DSGGQLGGQANAMVNIPVIEDKFAVRAVGFFDRTSGYMNNSLLNQTNINANKSYGGRL
                     TARIRPVDNVTLDLMSVYQDRKGVGTTWNYTEYQLTGKKFDQPLLIREPQEDRLKLVS
                     GTLDWDLGFATLITTASYSDRFLSYKFDYTPYFARYESVNNTGGLVAPYTGDPTRIPG
                     YSTFLGDCNAGYYSGTTCNGAGYQQLVNGYGNTSTYQPQSNRTSTEEIRLADDRHRFK
                     WTIGAYHSYRQNFTESLLYPTDPVTGLQLYPSGQNGNSYAVGAINMGL"
BASE COUNT         1654 a         2650 c         2483 g         1742 t
ORIGIN      
        1 tcggcactgt cattccgagt ggctcgagca acttgcgcga atccacgccg gcggcgacca
       61 cgaccttcga cgcgcgaagc gccgatccgt cggcgagcgt gatcaccgtt gtcttgtcat
      121 tgggattgag tcgcgtagca acagcgtggc gaattgtgcc tccaagttcg acaaagcgaa
      181 gccgaagcgc cttatgaagt gtgtcgaggt cggtgacctg gccactgccg gaaaaacgga
      241 ttgccccttc gatcggtaca ttcacaagcc tttgcagatc cgcgacctcc gccttggtcg
      301 cggcgcgcca tcgcgcctcg ccgcaattcg ctcgttccca atgagcgcga ccgctggagg
      361 cagtcgcctt gctctcccag acgatataat ggccatcctc gcgaagcagt tgtccagcgc
      421 ccgcttcagc ggcgaggcgc cgccacgccg gaagcgcggt cgaaagcatt tgggtgagga
      481 tcatggttcc acgcgcgagg cggtcgcgcc tcgctgccga cacgaagcgt aacgaaaagg
      541 gtagccattc cgcaatgtcg cgaagcggga gcgcaacggg gccgccgcgg aacgagagcc
      601 gggccggtaa cgatcggatt gtcgccgccg acgcaagcgg ctcgacctgc tccgttgcga
      661 tgtgcccggc gtttccgatc gaagctccac gcgggtgatc ggatggagcg atcatcgtcg
      721 tcgcgacacc gcggcgctga agttcgagcg cgcacgcaat cccgacaatt ccgtctccga
      781 tgacggctaa ctcaaacccg tcttcagtgg ccttgccgat catcgaccat ttgttcgaac
      841 aagacgcata tggaacctga gcgttcgttc acgccggctt cgacacgcca tgggtcacgc
      901 gctttcgagt tgccttgagg gctgcgtcgc cttgcaacgt tcaacccacc ggatcacgtc
      961 tgaccgccgc tggcccgtga gcggcatgcg cggcattcga acgtgctcag taccccggcc
     1021 catgatcatc tcggcaagct tgattgactg cacgagatca tgctcagcgt cgagatgaag
     1081 caacggcatg aaccaccggt atatggcacg cgcttcttcc cacttgcctt cgttggccgc
     1141 tttcacaaga cgcaccgatt ctaccggaaa cgcacttgta aggcccgaga cccatccggt
     1201 cgcgccgagc atcagtcctt ccagtgccac gtcgtcaaga cccgccatca ctgcgaaccg
     1261 gtcaccgaac cgattgatga tgtcggtcac gcgtcgaggg tcgggcgccg cctccttgat
     1321 cgccacaaca ttgggcaaat ttgaaagcgc ttcgagcgtc gcaaagtcga tattaacacg
     1381 ataagcgggc ggattgttat agagcatgat cggaagtgag gtggcctcgg cgacacgccg
     1441 gaagtgctcc accagctcct cgacggtcgg cacatagacc atgcagggaa gaaccatgaa
     1501 cgcgtcgacg ccgagcttct cggcatcacg gacatactcg atcgcccgtt tcgtggtaag
     1561 ctcgctaacg cccgcgacca gcggaacacg cccgccgatc gtttcgacag cgccttccag
     1621 gattgttcgt ttttcatcgg cttcgagcga gttgttttcg ccgcaggttc caaggaggac
     1681 gagcccgtct accccgtcgt cgacgagcgc cgcctgaacc ctcttcgtcg catcaaaatc
     1741 gaccgcaaga tcggtggtga actgcgtcgt tgcagcagga tacacacccc tccacagggc
     1801 ccgcgaagca gtcattctta tctcctttgt gccaagtcgt atacgatata agatactccc
     1861 tgcaaccgaa tttggtttaa tctggagcat agttcttggc agaggaagca agcgcaatgc
     1921 attctgcggc gcccgacatg gttcagctcc ggttcgacga gattgaagcc ctttgccgtt
     1981 cggttcttcg taaccatggc ctctcacgcg atcatgtcga ggcagtgacg cgcactatct
     2041 tagcagctga gcgggacgaa tgcgcgagcc atggagtgta tcgactgatc gtatgcgccg
     2101 ctacgctcgc caagggagcg gtggttccgg atgcggtgcc ggaaatcgac gatcccgctc
     2161 ccgctatcgt gcgggttgat gcgcgcggtg gctatgcgca acttgcgttc gaacgtgccc
     2221 tgcccctcct tgtcgagaag gctagaacga gcggaatagc agcactcgca atcaacaatt
     2281 gcgttcactt tgcggcattg tggccagaag tcgaagcggt cgtggaccac ggcctggtcg
     2341 cccttgcctg caccccgagc cacgcttggg ttgcgcccgc aggtggcagc aagggcctat
     2401 ttggcaccaa ccctctcgcc ttcggttggc cgcgtccagg tccctttcca tttgttttcg
     2461 atttcgcgac gagcgctgtt gcacggggtg aaatcgagtt gcaccgccgc gcgggcacgc
     2521 ccattcccat aggctgggcg gtcgacgaag atggaaagcc gacgattgat cccgctgccg
     2581 cgctcgaagg cgccatgctt accttcggtg gtcacaaggg ctcggcgctt gccgccatga
     2641 ttgagcttat cgcaggccca ttgattggtg atctcaccag cgctgaatcg atggaagctg
     2701 acgcaggcag aggcggatca ccgctcggcg gcgagctaat cgttgcgatc gatccgcgtg
     2761 gatttcttgg ccagaacgtc gctcatcatc tcgagcgcgc tgagaaattg tttgaaggca
     2821 tgactgccca aggcgctcga ttgccctcgt cccgccgatt tgcggcgcga cagcgctctc
     2881 ttgcgcgtgg tggagtatgc atcaagcgtt cgcttctcga ggatcttgaa agactccgta
     2941 tcgcaattca gccaaatggc gcatcgatcg agggcgaggg atccgtgaac caggccgcac
     3001 ccgattcggt cacgtagaga tggtcttcca gacggacacc gaagcggtca ggaattacaa
     3061 tcattggttc gttcgaaaag cacattcccg gcatgagcgg agtccggtcc ccgcgtacaa
     3121 gataggcggg ttcgtgaatc gaaagtccga tcccgtgacc cgtgcgatgc ggcagtcccg
     3181 gaagctggta gtccggcccg agtcccgccg cctccagcgt cgcacgagca gccgcgtcca
     3241 cttcttcgca tggccgcccg ggttggacgg cctcgaacgc agcggcctgg gcctggtgct
     3301 cgagcatcca gattcgccgt tgctcgtcgg taggctctcc gaagacgtag gttcgcgtga
     3361 tgtcgctgtg ataaccttca atgacacagc cggtgtctat gaggacgatg tctccttcgc
     3421 taagcgggca atctcccggg agtccgtgag ggtaggcact tgctcgtccg aactggacca
     3481 acgcgaattc gctcccggaa ggagctccga tcgctcgatg cgcctcgtcg agaaagcgcc
     3541 gaacctcgct tgggcgaatt ccagagtgaa gtatgcgtgc aactcggcgt tggatctcga
     3601 gcgtcatcga cattgcctgt tggatcagcg cgagctccgc tggtgacttg tacatgcggc
     3661 aacgatccac gactggggag gcaccgacca ttgacatgga tggcgcggcc ttggcgatgc
     3721 gctcaacgaa catgaatgcc attgctgggt cgaccgcgac ggcccccact ccgtgctcac
     3781 gcagcgctcc ggcaacaact tcggaagggc tttcgtcctc ctcccacaag cggacgtcag
     3841 cctcaatcga gaggctcgcc tccaaggtac caagctcgaa cttcggcgca atcacgattg
     3901 gtacgccacg aaccggcagc agcatcgcca cgagcctttc actcgctttc caagggacgc
     3961 tcgtgaagta gcggagactc gggccggcac cgataagaag agcaccactg ccgatgtcgc
     4021 gcgtgaagcg acgggccttc tctatcctct cggcaatttc attgcgctcg atcgatgccg
     4081 cgggcactct ccacggacga atgtcctgga gctcacgctc cgctgtcgat ccaccgattc
     4141 cgcgcatgtg cttctctcca agactgatcg aggcggccta tcagaccgtt gacgagatag
     4201 ttatatcgta tacgacacac ggcgggaggt gagaatgatt ggtcgctgcg gttgcttgtc
     4261 cggacctttc gacgcgagcg caattggcgc gcgaggaaga tatggactgc gcacgacggt
     4321 gtttccgacc gcataggata cgaacgtgcg acatacattc ttctgcatcg acggccatac
     4381 agcgggcaac ccggtccgcc tggtggctgg cggcgctccg ctgctccgcg gcgcaagcat
     4441 gctcgatcgg cgccaggact tcctcgaccg tttcgactgg atccgaacgg ggctctgctt
     4501 tgaacctcgc ggccacgaca tgatgtccgg tggattcctg tatccgccga ctgcgcccga
     4561 tagtgacgtc gggatcttgt tcatcgagac gtccggatgc ctgccgatgt gcggacacgg
     4621 gacaatcgga ataatcacct ttggcctcga aaatgggctg atcacaccct caatgcccgg
     4681 caagctcaaa gttgaggtac cggccggtcg aatagacgtt gaatatggcc aggaaggcga
     4741 gcgcgtctcg tgggtccgca ttcgcaatgt cgcatcttat ctcgcctacg aaggcctcga
     4801 aattgatgtg cccggcttcg gccgccttac gattgatatc gcttatggcg gcaacttcta
     4861 cgcgatcatc gaaccgcagg gaccttacac tgggctcgat gacctcggcg ccgcaaggat
     4921 aatcgagctg tcgcgcctcg tgcggtcgct cgttcaagaa gccgtcaatc ccgttcatcc
     4981 gacggatccc cgcatccagg gcgttcggca cgtgatgtgg accgataagc ccacgggcga
     5041 aggcgccgac ggacgcaacg ctgttttcta tggcgaacgc gcgatcgatc ggtcaccgtg
     5101 cggcaccgga acgtctgcgc gccttgccca tctcgtcgca aaaggccggc tgaagcccgg
     5161 cgatcgcttc gtgcatgaaa gcttcatcgg tagccgcttt acgggccgcg tcgaagaagc
     5221 cgtggagctt ggtggcaagc cggcgatcat cccgtcaatt gaaggaagcg ccattgcaac
     5281 gggattcaac acgatttgga ttgaccggca ggatccgttc tggagcggct tctcggtggt
     5341 ctgaagggtt cgaacgagcg tctggaagga acaagtgatg agtttttttg gaccgctcaa
     5401 acccattgag gcgcatgctc acgattccca gcacagtctc aggcggacat tgtcgtggcc
     5461 gcacctcgtt gcgctcggcg tcggcgcgat tgtcggtacg ggcatttaca ccctaaccgg
     5521 tgtcggcgct gagcgtgctg gtcccgccgt tgtactgtca ttcgctgttg ctggcgccgt
     5581 ctgtgcttgc gctgcacttg cctatgccga gcttgcgacg ttaatcccga cggccggaag
     5641 cgcctatact tatacttatt ccgtagccgg tgaaacgatc gcgtggatcg ttggatggag
     5701 ccttatcctt gaatactcac tcgcctgctc gaccgtggcg gtcggctggt cagggtatct
     5761 cgtcggttgg cttcacgccg ccggcctcaa ccttcctcac gcgcttcttg ccggtcccca
     5821 tctcggcggc atcatcaatc ttcctgccgt cctcgtcagt ctcaccatcg ctggaatgct
     5881 catggccggc actcgcgaga gtgcgactct caacatcgtt ctggtgacga tcaagctaac
     5941 ggcgcttgga gcgttcgtcc tctttaccgc gccggcattt cacgcggcga atttccaccc
     6001 attcatgcct tacggcttcg caagccatga ggccgcagga gaaacccgcg gcgtcatggc
     6061 cgccgccgca atcgttttct ttgctttcta tggtttcgat gcggtcgcga cttccgccga
     6121 agaagcgcgc gatccaggac gcgaccttac gattggaatc gtcggctcga tgcttctttg
     6181 cacgacgatc tacatcctcg tcgcgatttg cgccgttggc gcaatgccat atgttgcgct
     6241 cggcgcatcg cccgagccac tcgctctcgt gctgcggaca cttgatcacc cgctggtagc
     6301 gtatctcgtc ggcggtgccg ccctcgtcgc actaccatcc gtcatcctcg tcatgatgta
     6361 cggccaaagc cgcattttct tcgtgatggc gcgcgacggc ttgctcccgc gagtcctttc
     6421 cagcgtctcg aagagaacgg gctcgcccgt ccttgtgaca gcggtcaccg gacttttcgt
     6481 agccgctgcg gccggattct tcagcttgag cgagatagcc gaactcgcga atgcgggcac
     6541 actcctcgcg ttcatcgccg tcgccacctg catgatgacc ttgcgaagac gggcgcctga
     6601 tcttccgcgc gtctttcgct gtcctgctcc catgctcgtc ggaagcctgg cggtgatcgg
     6661 ctgcatctat ctcatgatca gcctccccga gaagacactc atccggttcg cgctgtggaa
     6721 tgcgatcggt cttgtcggct atttcgcata tggccggcgg cacagccttc tcgcgcgggt
     6781 ggctgagacg gggctcggat ctcgctcggc accggccgat cgctcgagtt cagccctcta
     6841 atggcttgca gcgacagcac gaaggtggac gtgaacgacg attccgcatt cccgcttgtt
     6901 cccacgtaca ggtgacggcg gcgcgcaagc ttaacaccac gcaatccaga tcagatcggg
     6961 aacgtagatg ccttggctca accgggtcag ctgaaaacaa atgatttgtg caaaaagaag
     7021 gggttataat gacaatgagt tttgagtctg ttgttgaagg aaaaccgcgc cgaattgcga
     7081 ttgcggcgct cttgacgacc tccgcgttgc tcacgccagt cgctgctgtt gggcagattg
     7141 ccccgccttc aacaacgagt tctggcgcaa cagtccaaga ccccgaagcg cacccgaccg
     7201 ccgctcagcc gggacttccg gcaggaacac ccaacgacag cgaaatcgtg gttaccgcgc
     7261 tcaagcgcgc gacgagcgtc gagcgcaccc cgctctcgat caccgcggtc agcgcggaca
     7321 ccctgaacag gcagaatatc accgatacta atgccttggc acggatcgca ccgagcctcg
     7381 tcatcaacga aaattcgaac ggcggcagcc gcgtcatcat tcgtaatctc tacgcgaccg
     7441 gtgaaccgct cgttggcctc tattatgacg aagtcccgct aagcggcacc ggcggtgttt
     7501 cgaacgatgc cggcggcacg ctccccggca tccggctgtt cgacgtcgag cgcgttgaag
     7561 ttctgcgcgg gccccaaggg acgctatacg gcgcaagttc gatggggggg accattcgag
     7621 tcattttcgc caagcccaac ctcaaatatc tttcgggcgc ggtggatggc cagttgacca
     7681 gcagcgcgga tagcggcggc cagctcggtg gccaggccaa tgcgatggtc aatataccgg
     7741 ttatcgagga taaattcgcg gtgcgtgccg tcggcttctt cgatcgcacg tcgggctaca
     7801 tgaacaatag cctgctgaac cagacgaata tcaatgcgaa caagagctat ggcgggcgcc
     7861 tcaccgcgcg catcaggccg gtcgacaatg tcaccctcga ccttatgtcg gtttaccagg
     7921 accgaaaggg tgtcggcacg acctggaact ataccgagta ccagctcacc ggaaagaaat
     7981 tcgatcagcc gctgctgatc cgcgaaccgc aagaagaccg tctgaaactg gtctcgggaa
     8041 cgctcgactg ggatctcggc ttcgcaacgc tgattacgac ggcgtcctat tcagaccggt
     8101 tccttagcta caagttcgat tatacgccct atttcgcgcg ctatgaatcg gtgaacaaca
     8161 ccggcggcct ggttgcgccc tatacgggtg atccgacgcg catccccggc tacagcacgt
     8221 tcctcggcga ttgcaacgcg ggctactaca gcgggacgac ctgcaatggt gcgggctatc
     8281 agcaactcgt caacggctac ggaaatacct cgacgtacca gccgcagtcg aacaggacgt
     8341 caaccgagga aatccggctg gcggatgatc gccatcgctt caagtggacg attggcgctt
     8401 atcacagcta ccgccagaac ttcaccgaat ctttactcta cccgaccgat cccgtgacgg
     8461 gattgcaact ctatcccagc ggccagaacg gtaattccta cgcggtcggc gccatcaaca
     8521 tggggctcg
//
LOCUS       DASRBJ010000297         3930 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_549017,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000297 DASRBJ010000000
VERSION     DASRBJ010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3930
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_549017"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..630
                     /locus_tag="VE968_08220"
     CDS             <1..630
                     /locus_tag="VE968_08220"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011414646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase 3"
                     /protein_id="HZU51840.1"
                     /translation="HAVCTGFLYALATADSMLRSGNADRALVIGAETFSRILDWEDRG
                     TCVLFGDGAGALVLSAEQGQTGILSTKLHADGRHNDLLFVDGGPSTTGTVGKLRMKGR
                     EVFRHAVVNLADVLNEVLESAGLTAGDVDWVVPHQANARILEATAKKLGLPSSKVVVT
                     VDRHANTSAASVPLAFDTAVKDGRIKRGDIVVLEAMGGGFTWGAAALRY"
     gene            742..1074
                     /locus_tag="VE968_08225"
     CDS             742..1074
                     /locus_tag="VE968_08225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010234379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HZU51841.1"
                     /translation="MADLGIARVTNEADTANTLTRADLADVVHRRLGLSRAESASLVE
                     RVLHHMCHALSEGQNVKLSGFGTFILRDKGQRVGRNPKTGVEVPIAPRRVMTFRASQI
                     MRDRIAKG"
     gene            1078..1479
                     /locus_tag="VE968_08230"
     CDS             1078..1479
                     /locus_tag="VE968_08230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HZU51842.1"
                     /translation="MATAGQKDPGALLTIGELSQELGVAQHILRYWETRFPQLKPMQR
                     AGNRRYYRPADVALARKINRLLNQEGYTVRGVQKLLRERGSEVPINPDVANEPPIEMA
                     RSSGQLPPDAGGLDVFRLIAIRNRLAAALDH"
     gene            complement(1480..1635)
                     /locus_tag="VE968_08235"
     CDS             complement(1480..1635)
                     /locus_tag="VE968_08235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51843.1"
                     /translation="MSDGRDRPLRERVEDKFPTGALAVLELPGSRWNELEAASGRIIE
                     LILPREI"
     gene            complement(1674..1991)
                     /locus_tag="VE968_08240"
     CDS             complement(1674..1991)
                     /locus_tag="VE968_08240"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HZU51844.1"
                     /translation="MHHISILRHAKSRWDKPELADFDRPLNARGWEAARRLGKELKHR
                     SFTFDLVIASPALRVRETIEGVRAEFAFTAPSSSNKRCISLPRTSSSLLFEISLNPYS
                     VHC"
     gene            complement(1945..>3930)
                     /locus_tag="VE968_08245"
     CDS             complement(1945..>3930)
                     /locus_tag="VE968_08245"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007711173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HZU51845.1"
                     /translation="AQGTVWVSTFTKALQRQLDAEGHKLFTDPDERARRVVVRKGREN
                     YLCLLNLEDALQGAFAGRAAVLAQLVGRWAAYSKDGDMIGGDLPGWLPSLFRRAGAAA
                     LTDRRGECVYAGCPHYRRCFIERAERASRGADIVIANHALVMVNAARAREDAPGRILF
                     DEGHHLFDAADSTFSVVFGGQEAIELRRWIVGPESRSRGRRRGLAARLTDVASYDEEG
                     AHALEAAVEAAKSLPSDGWLQRLVEGSPFGPIEALLGEVRGTVYARSKAQEAGYGLET
                     ELAEPDGALVSAAAAAAEVLETLTTPLAVLSRRLDAVLEDAPDWLDAQARARVEGAIR
                     GLSWRRETLGAWIALLARIGGKADPEFVDWLAVDRSDGREFDVAIHRRWLDPTKPLAA
                     AVLSRADGVMVTSATLRGGDGWEAADARTGALHLPGPITHFEAQSPFEYERCSEVLIV
                     TDIKQGDIASLAGAYARLIAAADGGTLGLFTAVQRLKAVHARIADRLARDGLPLLAQH
                     VDPIDAGTLVDIFRDDPRASLLGTDALRDGVDVPGESLRLVVMERVPWPRPTVLHGAR
                     RMAGGGSSYDDRVVRARLAQAFGRLIRRQNDRGVFVILSSAMPSRLLKAFPPGVPVTR
                     LPLDEALLRVEQFFAHPVNATTNAPHLDPSAREIAVG"
BASE COUNT          793 a         1209 c         1202 g          726 t
ORIGIN      
        1 catgccgtct gcaccggatt tctgtacgct ttggcaacgg ctgattcgat gcttcgttcg
       61 ggtaacgccg atcgagcgct tgtaatcggt gccgagacct ttagccgcat cctcgactgg
      121 gaagatcgcg gtacttgcgt actgttcggc gacggcgccg gtgcgctggt cctcagtgcc
      181 gagcaggggc aaacaggaat attgtcgacc aagctccacg cggatggccg gcacaacgac
      241 cttctgttcg tcgacggcgg tccctcgacg acaggtacgg tcgggaagct gcgcatgaaa
      301 ggtcgcgaag tctttcgaca cgccgttgtg aatcttgctg acgtcctgaa tgaggttctc
      361 gagtcggcag gtcttacggc aggcgacgtc gactgggtcg tccctcatca ggctaatgcg
      421 cgaattctgg aagcaaccgc gaagaaactc gggcttccgt ccagcaaggt cgtcgttacg
      481 gttgaccggc acgccaacac atcagccgca tcggtcccgc ttgcgtttga caccgccgtt
      541 aaggacgggc gaatcaagcg cggcgacatt gttgtgcttg aagcgatggg tggtggcttt
      601 acatggggcg cggcagcgct caggtattga aaaaattgga atatcagttg attagtcgaa
      661 ttgccgacac gacggatttc cgttacgaaa gcgtaatcga gacggcgggg ggcacgcgcc
      721 gttacatggc ggaggaatga aatggccgat ctcggcatcg cgcgggtcac gaacgaagca
      781 gacaccgcaa atacactaac gcgggcggat ctcgccgacg tcgtgcatcg aaggctcggt
      841 ctctcgcgcg ccgagtccgc gagcctagtc gaacgcgtgc ttcaccacat gtgccatgcg
      901 ctgtcggaag ggcagaatgt gaagctctcc gggttcggta ccttcatcct gcgcgacaag
      961 gggcagcgcg ttggcaggaa tcccaagacc ggtgtcgaag ttcccattgc tccgcggcgc
     1021 gtcatgacat ttcgtgccag ccaaatcatg cgcgaccgga tcgcgaaagg ctaagacttg
     1081 gcaaccgcgg gacagaaaga ccccggtgcc ttactgacaa tcggcgagtt atcgcaggaa
     1141 cttggcgttg cccagcatat cctgcgctat tgggaaacgc gctttccgca gctcaagcca
     1201 atgcaacggg ctggtaatcg tcgttactac cggccggccg acgttgctct tgcgcggaag
     1261 atcaaccgat tgctgaacca ggaaggctat acggtacgcg gtgttcagaa actcctgcgt
     1321 gaacgcggta gtgaagtgcc gatcaatccc gacgtcgcga acgaaccgcc aatcgaaatg
     1381 gcgcgaagca gcggacaatt gccgccagac gctggcggac ttgacgtttt ccgactgatc
     1441 gcgatccgga accgtctcgc tgcggcactt gatcactagt cagatttccc ggggcaagat
     1501 caactcgata atccgtccgc ttgccgcttc taattcgttc cagcggcttc ccggcaattc
     1561 gagaacggcg agcgcgccag tcgggaattt gtcctcgaca cgctcacgca acggacgatc
     1621 cctaccatcg ctcatgcgta gcaggaaatt ttgcagacct ggattgtgtc cgatcagcaa
     1681 tggacgctgt acggattgag cgagatttcg aacaatagcg acgagctggt cctcggaagc
     1741 gagatacatc gcttgttcga actggaggga gcagtgaacg caaattctgc gcgcacgccc
     1801 tcgatcgtct cgcgaacgcg aagggcgggg ctcgcgatga caaggtcaaa ggtgaacgac
     1861 cggtgcttga gttccttgcc gagacgacgc gcggcttccc agccgcgcgc gtttagtggc
     1921 cgatcgaaat cggcgagctc cggcttatcc caccgcgatt tcgcgtgccg aaggatcgag
     1981 atgtggtgca ttggtagtgg cgttcaccgg atgcgcaaag aattgctcga cccgcagaag
     2041 cgcttcatcg agcggcagcc tagtaaccgg cacgcccggt gggaaggcct tcaacagccg
     2101 tgaaggcatc gctgaggaga ggattacaaa aaccccccgg tcgttttggc gcctgatgag
     2161 ccgcccgaat gcttgtgcga gccgcgcgcg cacgacacga tcgtcgtaag aacttccgcc
     2221 gcctgccatg cgccgagcgc cgtgcagaac ggttgggcgt ggccatggca cgcgttccat
     2281 aacgacgagc ctcagcgatt cgcccggcac atcgacgccg tcgcgaaggg catcagtacc
     2341 aagcaatgat gcgcgcggat catcacggaa aatatcgaca agcgtacccg cgtcgatcgg
     2401 atcgacgtgt tgggcaagga gtggcaatcc gtcgcgcgca agtcggtcgg caattcttgc
     2461 atgaacggcc ttgagcctct ggacggccgt aaaaagcccg agcgtgccgc catcggctgc
     2521 cgcaatcagt cgtgcatagg cgcccgcgag cgaggcaatg tcaccctgct tgatgtccgt
     2581 gacgatcagt acttcggagc agcgctcgta ctcaaacggg ctttgcgcct caaaatgcgt
     2641 aattggaccc ggcaagtgca gcgcgccggt ccgagcatcg gctgcttccc atccgtcacc
     2701 gccgcggagc gttgctgacg tgaccatgac gccgtccgcg cgagaaagta ccgcggccgc
     2761 taacggcttt gtgggatcga gccaccggcg atgaatggcg acgtcaaatt cgcgtccgtc
     2821 gctccggtcg acggcaagcc aatcgacaaa ttccgggtct gcttttccgc cgattcgggc
     2881 aagcagtgca atccacgcac cgagcgtctc gcgtcgccat gaaagacctc ggatggcgcc
     2941 ctcaacacgc gcgcgtgcct gggcgtcgag ccagtccggg gcatcttcaa gcaccgcgtc
     3001 gagccgacgt gaaaggacag cgagcggcgt tgtcaacgtt tccaagacct cggcagcggc
     3061 tgcagccgcc gagaccagcg cgccgtccgg ctcggcaagt tcggtctcga ggccgtagcc
     3121 cgcttcctgc gcctttgaac gtgcgtaaac cgttcccctt acttcgccca gcagcgcttc
     3181 gatgggtcca aacggcgatc cttcgacgag ccgttgtaac catccgtctg acgggaggga
     3241 cttggcggcc tcgaccgctg cctcgagcgc gtgagcgcct tcctcgtcat aggaggcaac
     3301 gtccgtcagg cgtgcagcga gcccgcgccg ccgaccacga gagcgacttt ccggaccaac
     3361 gatccagcgc ctcagttcga tcgcttcctg ccccccaaag acaactgaaa aggtcgaatc
     3421 ggcagcatca aagaggtggt gtccctcgtc aaataagatg cgtcccggcg cgtcttcgcg
     3481 cgcccgcgcg gcgttgacca tcacgagagc gtgattcgca atcacgatgt ccgcgccccg
     3541 gcttgcccgc tcagcgcgtt cgatgaagca tcgccgatag tgaggacagc cggcatagac
     3601 gcattcgccc cgccggtccg tcagtgccgc tgcgccagcg cgtcggaaga ggctcggcag
     3661 ccacccaggc aagtcgccgc cgatcatgtc gccatctttg ctgtacgcgg cccagcggcc
     3721 aacgagctgc gccaggactg ctgctcgccc agcgaacgca ccctggagcg catcttcgag
     3781 attcagcagg caaaggtagt tttcgcgacc cttccgcacg acaacgcgtc gagcgcgctc
     3841 atcgggatcg gtgaagagct tgtgtccttc agcgtcgagt tggcgctgca gcgccttcgt
     3901 gaaggtcgac acccatacgg taccctgcgc
//
LOCUS       DASRBJ010000298         2496 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_438818,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000298 DASRBJ010000000
VERSION     DASRBJ010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438818"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1272)
                     /locus_tag="VE968_08250"
     CDS             complement(<1..1272)
                     /locus_tag="VE968_08250"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HZU51846.1"
                     /translation="MIIDDEPLIRLSMTDALKAVGYEVRAAATGHEGMELLTTKTFDI
                     VISDLRLPGTDGLELLQVCKQRSPRTEVIMITAHGSVEAAVEAMKHGAYDFITKPFSM
                     DELLLIVDRVSKVLALREENLQLREELEGKFNFEGILGKSARMREVLETVRMVAATDS
                     TVLIVGESGTGKELIANAIHRNSPRRDQALVKISCAALPETLLEAELFGHEKGAFTGA
                     LRQRRGRFEMAHKGTLFLDEIGEISPVVQVKLLRVLQERQFERVGGNETIEVDVRLVC
                     ATQKDLKKEVQQGRFREDLYYRLNVVPITLPPLRERRDDLMIIADHMLKARSERLNKP
                     IKGFSQSAQELLLRYSFPGNIRELENLIERAVALSKPNEEVQAWTLCGQPTCPFIGGP
                     VQPMCGFCSEGLSGQGKAAQPLDSLADARERF"
     gene            complement(1287..2303)
                     /locus_tag="VE968_08255"
     CDS             complement(1287..2303)
                     /locus_tag="VE968_08255"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU51847.1"
                     /translation="MYTLDAEQRFTYVNSKIEAWGYKKDDLIGRPYLALLSKRHRGRR
                     LKSTLDIGAKLVYEVEVVTKAGDVRTATVSVSPLTDPEGRILGVLGIARDISATKKLE
                     QQILNSEKLASIGKLAAGVAHEINNPLGGILNCLYNLRKGALSPERQAEYLFSMEDGL
                     RRVQKIVRQLLEFSQQHEPELSLTDVNEVIERVLVLTNHAFTANRITLDKQLTAGLPP
                     LMVDRHMLEQVLMNLILNAIQAIRGGGVITIRTKAAGERCAIEVEDTGIGIPASVMPK
                     IFDPFFSTKGTGEGTGLGLSVSLGIVERHGGTIHVDSEVGKGSIFTVWLPIHRDRVPV
                     GKGS"
     gene            2184..>2496
                     /locus_tag="VE968_08260"
     CDS             2184..>2496
                     /locus_tag="VE968_08260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51848.1"
                     /translation="MPLGQQGQIRPTDQIVLLISPRLDLAVDVRKPLLGVQRVNDIVR
                     ILEEILQILLRGFDLARPLGNFRFERLIVLLEMLLQTFAFGDVVQLDHDGRSCAVHDA
                     DD"
BASE COUNT          468 a          813 c          684 g          531 t
ORIGIN      
        1 gaaccgttcg cgcgcatcgg ccaatgaatc gaggggctga gcggccttcc cctggccgct
       61 cagtccctcg ctgcaaaatc cacacatcgg ctgcaccggc ccaccaatga acggacacgt
      121 cggctgaccg cagagggtcc aggcctgaac ctcttcattg ggtttgctca gcgccacggc
      181 gcgttcgatc aaattctcca gctcgcggat gttccctgga aacgaataac gcagcagcag
      241 ctcttgcgcg ctctgcgaga aacccttaat cggcttgttc agtcgttccg atcgcgcctt
      301 caacatgtgg tcggcaatga tcatcaaatc atcccggcgc tcgcgcaagg ggggcaacgt
      361 aatgggcacg acattgagcc ggtaatacaa gtcttctcgg aagcggccct gctgcacttc
      421 cttcttcaga tccttctgcg tcgcgcacac cagccgcaca tcgacctcaa tcgtttcgtt
      481 tccgccgacg cgctcgaatt gccgctcctg taagacgcgc agcagcttca cctgcacgac
      541 cggggaaatc tcgccgatct catccaggaa cagcgtaccc ttgtgggcca tctcgaaccg
      601 gccacgccgc tggcggagcg cgccggtaaa cgcgcctttc tcgtggccga acagttcggc
      661 ttccaacaac gtttcgggca gcgcggcgca actgatcttg accagcgctt ggtcccgtcg
      721 cggactgttg cgatgaatgg cgttggcgat caattccttg ccggtcccgc tttccccgac
      781 aatcaagacg gtggaatcgg tcgcggcgac catgcggacc gtctccaaga cctcgcgcat
      841 ccgggcgctc ttgcccagga tgccctcgaa attgaacttg ccctccagct cctcacgaag
      901 ctgcagattt tcctctcgga gcgcgagcac tttgctgacc cgatcgacga tcaacaatag
      961 ctcgtccatc gaaaacggct tcgtgatgaa gtcgtaggcg ccgtgcttca tggcttcgac
     1021 cgccgcctcc accgaaccgt gcgcggtaat cataatgact tcggtccgtg gcgaccgctg
     1081 cttgcagacc tgcaagagtt cgaggccgtc ggtgccgggg agccgaagat cggaaatgac
     1141 gatatcgaac gtcttcgtcg tcaataactc catgccttcg tgtcctgtcg cggcggcgcg
     1201 cacctcatag cccaccgcct tgagcgcatc cgtcatgctg agccggatca agggctcgtc
     1261 atcgatgatc aacactgtcg gtgctttcat gacccctttc caaccggtac ccgatcgcga
     1321 tggatcggca accagaccgt aaatatcgaa cccttcccta cttcactgtc gacgtgaatc
     1381 gtgccgccgt gccgctcgac gatgccgagg ctgacggaca agcccagccc cgtaccttca
     1441 ccggttccct tcgtactgaa gaacgggtcg aagattttcg gcatgacgct cgccgggatc
     1501 ccgatcccgg tatcctcgac ctcgatggcg catcgttcac cggcggcctt cgtccggatc
     1561 gtgatcacgc cgccgccgcg gatcgcttgg atcgcgttca aaatgagatt catcagcact
     1621 tgctccagca tgtgtcgatc gaccatcagc ggcggcaagc cggcggtcag ttgtttgtcc
     1681 agcgtaatcc ggttcgcggt gaatgcatgg ttggtcaaga ccagcacccg ctcgatcacc
     1741 tcgttcacat ccgtcaacga caactcgggt tcgtgctgct gcgagaattc cagcaactgc
     1801 ctgacgatct tctgcacgcg gcgaagcccg tcttccatcg agaacagata ctcggcctgc
     1861 cgttccggtg acaaggcgcc ttttcgtaga ttgtagagac agttcaagat gccgccgagc
     1921 gggttgttga tctcgtgcgc gaccccggcc gccagtttgc cgatggaggc gagcttttcg
     1981 gaattcagaa tctgttgctc gagcttcttg gtggccgaaa tgtcgcgcgc gatgccgagc
     2041 acgcccagga tgcgaccctc cgggtccgtc agcggcgaga cactgaccgt cgcggtccgg
     2101 acatcgcccg ccttcgtgac aacttcgacc tcatacacca gcttggcccc gatatcgagc
     2161 gtgctcttca ggcgacggcc acggtgccgc ttggacagca aggccaaata cggccgaccg
     2221 atcaaatcgt ccttcttata tccccacgcc tcgatcttgc tgttgacgta cgtaaaccgc
     2281 tgctcggcgt ccagcgtgta aatgacatcg ttcgcattct cgaggagatt ctccagatac
     2341 tgcttcgtgg cttcgatctc gcgcgtccgc tcggaaactt ccgcttcgag cgcctcattg
     2401 tactgctgga gatgttgctc cagacgtttg cgttcggtga tgtcgtgcag ttggaccatg
     2461 acggccggtc gtgtgccgtc cacgacgcgg atgacg
//
LOCUS       DASRBJ010000299        10371 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_184008,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000299 DASRBJ010000000
VERSION     DASRBJ010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 10371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10371
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184008"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..505
                     /gene="yidC"
                     /locus_tag="VE968_08265"
     CDS             <1..505
                     /gene="yidC"
                     /locus_tag="VE968_08265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0051205 - protein insertion into membrane
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HZU51849.1"
                     /translation="DDKQRQQQEIMKLYQAEKINPAAGCLPILLQIPVFYALYKVLVV
                     SVEMRHQPFIGWIRDLSAPDPLTPVNLFGLLHWTPPAMLAIGVLPIFVGATQYLSMKL
                     NPQPMDPAQAQMFAIMPWVLVFVMAPFAAGLQLYWMTNNILTMLQQWFLYRKFGLHLS
                     DTHPVHT"
     gene            502..1146
                     /gene="yihA"
                     /locus_tag="VE968_08270"
     CDS             502..1146
                     /gene="yihA"
                     /locus_tag="VE968_08270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HZU51850.1"
                     /translation="MSAAADEELVEQARKLFAGPVEFLKSAPGVEFLPEPSVPEVAFA
                     GRSNVGKSSLLNGLTNRKGLARTSNTPGRTQELNFFEIGNPAALRLVDMPGYGFAEAP
                     RDLVKRWKRLVNDYLRGRQVLKRVLVLVDSRHGLKDVDREMMRMLDDSAVSYQVVLTK
                     ADKIKPSALGALYEMTALEAAKHPAAHPTIFTTSSETGSGIAELRAAVLEAATS"
     gene            1157..1825
                     /locus_tag="VE968_08275"
     CDS             1157..1825
                     /locus_tag="VE968_08275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019514913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HZU51851.1"
                     /translation="MFKLIIGNRAYSSWSMRGWLACKQSGEDFEEYVVPLFDAEWEKR
                     REGDEFAPSLGKVPILWDGDIVVWDSLAIIEFLADRYGSALYWPEEEIARAVARSMCA
                     EMHSGFSNVRRELPMNVRKSFPARKLSDAVREELDRILQLWAQARARFGGTGEFLFGE
                     WCAADMMYAPVVTRLITYSVSVPNFAGVYMKNVLSHPHVAEWIDRAQDEPWVIDEYET
                     HKAA"
     gene            complement(1822..2286)
                     /locus_tag="VE968_08280"
     CDS             complement(1822..2286)
                     /locus_tag="VE968_08280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003041650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HZU51852.1"
                     /translation="MPKIDLDSIEQVNRTGYPDPFHKQVAGRWYRRLAPASGVTDFGV
                     SHVVLKPGAWSSQRHWHNGEDEFLVMLEGEAVLVEDNGRTVLRAGDCAAWPKGTTNGH
                     HLRNESERDCTFIVVGGGTNTGGGYSDIDLLFTPDGTYTHRDGTAYEAKRPA"
     gene            complement(2316..4388)
                     /locus_tag="VE968_08285"
     CDS             complement(2316..4388)
                     /locus_tag="VE968_08285"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HZU51853.1"
                     /translation="MAGITLVLPVAAIAQTAPASGPTVAPTAGGRTAAPATRIYTLAD
                     FARFAPKTAYDMVSEIPGFTIQTVDTTNRGLGQASENVLINGQRVANKTGAVDLLQRT
                     PASGVERIEIVDAASLGIAGLSGEVANVILKPNRKASGQFEWDLNGRSHFTEPELLGG
                     SVSYSGSEGPVDYTLSVRNSYGRGGIGGPIYIYDANHVLTEERHEVYHSESEQANSQA
                     KFTIHGPGSSIGNLNLGYAPYTNPQHISDTRVESSGELRSRTDTVAMTGYNGDINGDY
                     DFALGPGRLKLIGFHHWEHDPMEQTDILNFVTTGADSEGSRFINDTHSAETVARAEYN
                     WKGGRNDWQISFERAFNWLRQNGALFELSPDQSFDPVTFPGATGRVTELRYEALATFS
                     RPLSSKLDLQLAGGAEVSRLDRTSDDEPARRFVRPKGSVTLGWHPQASWDISLKLRRR
                     VGQISFANFLAQTQLSSGRQEAGNPQLVPPQSWEVETDVAHELGRWGKTSLQLHYYKV
                     QDIVDFIPVGSDEQAVGNLPRADRAGFQSTSTINFDPIGWTGAKLDATLAAEWTSVRD
                     PLTGKQRPISGVEDRWGSIQVRHDIPHTHFAWSAYVQYQHYVSNYYLSEIDQTLDIPW
                     LVGFFVEDKDVLGTTVRLSIDNVFNGRHLEYRTVWDGWRDRTPVSFIERHNELVGPIY
                     TLSIKGNF"
     gene            4599..5735
                     /gene="dapE"
                     /locus_tag="VE968_08290"
     CDS             4599..5735
                     /gene="dapE"
                     /locus_tag="VE968_08290"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HZU51854.1"
                     /translation="MPDRIDPVSLAADLIRCQSVTPATGPVFDILDQALSSLGFAIHR
                     WVMGEPPDGPTENMVAIRGTGGPHFGFAGHLDVVPPGEGWSSDPFAAVIADGVLVGRG
                     ANDMKGAIAAYVAALSRIDRHGGTLSLMITGDEEGYSTYGTPRIIDWLNERAIRPDMI
                     LIGEPTCVDRLGDTVKIGRRGSVNMWIEVPGVQGHVAYPHRATNPVPPLARVIAALDA
                     LHLDDGTDQFPPSNLEFTAVSTPTTASNVIPGSATAQLNIRFNNLQRGTDLVALVEEI
                     AKREAPGASVRARISGEAFLTPPGQLYDVVVAAIEEETGLTPELSTSGGTSDGRFLIQ
                     LCPVVDFGLPNATMHKVGECASVDDLATLSRIYENILKKVVPLA"
     gene            complement(5800..7497)
                     /locus_tag="VE968_08295"
     CDS             complement(5800..7497)
                     /locus_tag="VE968_08295"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HZU51855.1"
                     /translation="MTAGTAQKISNAVLSCAAGFASFVFSLAALLYLTALDEKILAAL
                     IAGTFCLLISYVAAERPNSESARALAALGERLLAVEDGDLVSPAPPSVQRNMPKLAAA
                     VDSLFAEVRASIENAQALGMYDPVTALPNRLHFRSEADKLMSAVYADSLVPQTAAMLF
                     IDLDRFKMVNDSLGHARGDQLLVMVANRLRVVVNAEFTGNAKSRPLLARLAGDEFTIF
                     FPEVNSINEIERVARSIALAISEPFELSSHSVDVGASIGIAISPDHGTSIEALMRAAD
                     IAMYQAKACGGGQHYLFNAQLAAEHQEKIDTEKALTEAVQRGEFVLAFQPQMSLVTGE
                     FAGAEALLRWNHPRDGLRLPASFIPVAERTGLVAEIGEWVIGEVAATLGTWHRQGFDG
                     RVAFNISPRQVERPDFFAKLRQTFADAAVPLSMIELEFTESAAMEAGAATLAEIAGLR
                     RDGAQIAIDDFGTGYSNIARLRSMPLDRVKLDQSLIADIEHSEKARIIVQAVLQLIKG
                     VECEIVAEAVETVAQADILRAMGCDTVQGFVFAQPMFEQEFLAWTRNGRGRKSKSVA"
     gene            complement(7571..8107)
                     /locus_tag="VE968_08300"
     CDS             complement(7571..8107)
                     /locus_tag="VE968_08300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020486452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HZU51856.1"
                     /translation="MRSLSPEEAELWNRVATTIRPLSREARISREAPAQQEVRPKSHA
                     KMTAAPVGKVARVKPVPISERTLDGSWDKRLRSGSVEPDRILDLHGMNLDTAWTAIDR
                     SLEQAIARGERVVLLITGHHRPGEPPILRGRIRAAVHDWLAASRHARHIAAVRGAHRR
                     HGGGGSLYLVLRRKPPVP"
     gene            complement(8088..9281)
                     /locus_tag="VE968_08305"
     CDS             complement(8088..9281)
                     /locus_tag="VE968_08305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007165334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HZU51857.1"
                     /translation="MRLLLGAALAASLSLLAACATKPIAPPETTVPPPPAAVTPTPPP
                     PVPPSPVGRNAISTGVTLDHPRVVAADDAARALSAFKKSCPAVMTRNDGSGITEPADW
                     RAVCAQAATLDPSFASGFFYYDFDWLKVGDGHAFATGYYEPEIAGSRTPQPGYVPIYG
                     LPPDLVRCTRPDGTTGRGRIDENGTCVPYFSRPEIEDGALATQGIVLAWAKDAVDLFF
                     LEIQGSGRIRFDDGSIMRVGYAGQNGRDYVAIGRLLRDRGILPPGGANMQAIKDWIRA
                     NPDQGRELMRENLSYVFFKELTGPGPLGALNVPVTERSTVAADPSFVPLGAPIYLTDA
                     DRREVDGLWVAQDTGGAIKGPNRFDTFWGAGPEAVAIAGGMSANGQALILVPKGVAAR
                     AIAQP"
     gene            complement(9278..9931)
                     /locus_tag="VE968_08310"
     CDS             complement(9278..9931)
                     /locus_tag="VE968_08310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013845983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tim44/TimA family putative adaptor protein"
                     /protein_id="HZU51858.1"
                     /translation="MAVIVILALVALFIGLRLYSVLGERTGHEQQPILKPADSEPRAA
                     APVTQPAAPQAAPAEAGDMAFVPTAGPGVRAIVAADQTFDVARFLEGAKSAYRMILEA
                     FWKGDLSALKGHVDEHVLAAFEGAVEQRNKDGVTLDNRLVAIEQAVISEAALERGVAV
                     ITVRFEADIAAVTRNAEGQVIAGSLSDAVQTRDLWTFRRDTSSRDPNWLLIETDEEE"
     gene            10115..>10371
                     /locus_tag="VE968_08315"
     CDS             10115..>10371
                     /locus_tag="VE968_08315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011241388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0051262 - protein tetramerization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HZU51859.1"
                     /translation="MADQEPSAGPNGAGDNNFQPQVSILAQYVKDLSVENPSAPQVYS
                     WQVQPNLDVQFNLNVQPSGDNMHEVTLKFDISARSDNGTHFV"
BASE COUNT         2063 a         3179 c         3116 g         2013 t
ORIGIN      
        1 ggacgacaag cagcgccagc agcaggaaat catgaagctt taccaggctg agaagatcaa
       61 tccggccgct ggttgcctgc cgattctcct gcagatcccg gtcttctacg cgctctacaa
      121 agtgctcgtc gtgagcgtcg aaatgcgcca ccagcccttc atcggctgga tacgcgactt
      181 gtcagcgccg gatccgctga cgcccgtgaa cctctttgga cttctccatt ggacaccacc
      241 ggcgatgctc gcaatcggcg ttcttccgat attcgttggc gcaacgcagt atctgtcgat
      301 gaaattgaac ccgcagccga tggacccagc acaagcacag atgttcgcaa tcatgccctg
      361 ggtactggta ttcgtcatgg cgccatttgc cgccggactg cagctttact ggatgacgaa
      421 caacatcctg accatgctgc agcaatggtt tctctaccgg aagttcggcc ttcacctgtc
      481 ggatacgcac ccggtccaca catgagtgcc gccgcggacg aggaactggt cgagcaagcg
      541 cgcaagctct ttgccgggcc ggtcgagttc ctgaaatccg cacccggggt cgaatttctg
      601 cccgagccaa gcgtgccgga agtcgccttc gcgggccggt ccaacgttgg aaaaagttcg
      661 ttgcttaatg ggctgacgaa ccggaagggc cttgcgcgaa cgtcaaacac tcccggccgc
      721 acgcaggaac tcaacttttt cgagattgga aacccggccg cgttacggct cgtcgatatg
      781 cccggatacg ggttcgccga agcgccgagg gatctggtaa agcgctggaa gcgtctcgtg
      841 aacgattacc tgcgtggtcg ccaggtcttg aagcgagtcc tcgtcctggt cgattcgcgc
      901 cacggtctta aggacgtcga ccgcgaaatg atgcgcatgc tggatgattc ggcggtgagc
      961 taccaggtcg ttctcaccaa ggccgacaag atcaaaccca gtgcactcgg cgccttgtac
     1021 gaaatgacgg cgctcgaggc cgcgaaacat cctgcggccc acccgacaat cttcacgacg
     1081 tcgagtgaaa ccggtagcgg gattgccgaa ttgcgcgcgg cagtcctcga agctgcaacg
     1141 tcgtaaggag gcaagcttgt tcaagctgat catcggcaat cgagcctatt cgagctggtc
     1201 gatgcgcggt tggctcgcgt gcaagcagtc cggcgaagat ttcgaggaat atgtcgttcc
     1261 gttgttcgat gccgagtggg agaaacgccg cgaaggcgat gaattcgccc cttcgctcgg
     1321 caaggtgcca atactttggg acggcgacat cgtcgtttgg gacagtcttg cgatcatcga
     1381 gtttctcgcc gaccgctacg gcagcgccct ctattggccg gaagaagaaa tcgcacgcgc
     1441 ggtcgcgcgc tcgatgtgtg ccgaaatgca ctccggattt tcaaatgtgc ggcgcgaatt
     1501 gccgatgaac gttcgaaaga gcttcccagc aaggaaactc agtgacgcgg tgcgcgaaga
     1561 gctggatcga attctccaat tgtgggcgca ggcacgagcg cgttttggcg gcaccggcga
     1621 gtttctgttc ggcgagtggt gcgctgcgga catgatgtac gcgcccgtcg tcacgcgcct
     1681 catcacctac agcgtcagcg ttccgaactt cgccggcgtc tatatgaaga atgtcctgtc
     1741 gcatccccac gtcgccgagt ggatcgaccg ggcgcaggac gaaccctggg tcatcgacga
     1801 atacgagacc cacaaagcgg cctaggcggg ccgcttcgcc tcataggctg ttccgtcacg
     1861 atgcgtgtac gtaccgtctg gcgtgaacag gagatcgatg tccgaatagc caccgcccgt
     1921 gttcgtgccc ccgccgacga cgatgaacgt gcagtcccgc tcgctttcat tgcgaaggtg
     1981 atggccgttg gtggtgcctt tgggccaggc ggcacaatcg cccgcgcgaa ggacggttcg
     2041 accattgtct tcgacaagaa ccgcttcacc ctcgagcatg acgaggaact cgtcttcgcc
     2101 attgtgccag tgccgctgcg acgaccaggc accgggcttc aataccacgt gactaacccc
     2161 gaaatcggtc acgcccgaag caggggcgag ccggcgatac cagcgacctg ccacttgctt
     2221 gtgaaacggg tcgggatagc cggttcggtt tacctgttcg atggaatcaa gatcgatctt
     2281 gggcatggaa ttgccttaga ctggctcgag ccgcgttaga agtttccctt gatggacaag
     2341 gtatagatcg gccccaccag ctcattgtga cgctcaatga aggaaacggg cgtccgatcg
     2401 cgccacccgt cccagacggt gcgatattcg agatggcggc cgttgaacac attgtcgatg
     2461 ctcaagcgca cggttgtacc aagcacgtcc ttatcttcga caaagaaccc gacaagccag
     2521 gggatatcga gcgtctggtc gatctcgctc aggtaataat tgctgacata atgctggtac
     2581 tggacgtaag cgctccaggc gaaatgcgta tgggggatgt catggcggac ctgaatgctc
     2641 ccccatcggt cctcgacacc gctaatcggg cgctgcttgc cggtgagcgg gtcgcgtacc
     2701 gaggtccact cggcggcaag cgttgcatcg agcttcgcgc cggtccagcc aatcggatcg
     2761 aaattgatcg tgctcgtact ttggaagccc gcgcgatcgg cgcgcgggag gttcccgaca
     2821 gcctgttcat cgctaccaac ggggatgaag tcgacgatgt cctgaacctt gtaatagtgc
     2881 agttggaggc tcgtcttgcc ccatcgacca agctcgtgcg cgacgtcggt ttcgacttcc
     2941 cagctttgcg gcggcaccag ctgcggatta ccagcctcct gccggcctga gctgagctgg
     3001 gtctgggcaa ggaaattcgc gaagctgatc tgaccaactc ggcggcgcag cttgaggctg
     3061 atgtcccagc tcgcttgcgg gtgccagccg agcgtgacgc ttccttttgg ccgaacgaac
     3121 cggcgcgccg gctcgtcatc ggaagtccgg tcgagacggg agacctcggc acccccggcg
     3181 agctggagat cgagcttgga cgaaagcggt cggctaaatg tcgcaagtgc ctcatagcgc
     3241 agctccgtga cccttcccgt tgctcctgga aaggtgaccg gatcaaagct ttgatcggga
     3301 gaaagctcaa acaaggcacc gttctgccga agccagttga aggcgcgctc gaaagagatc
     3361 tgccaatcgt tgcggccgcc cttccagtta tactctgctc gcgcgacggt ctcggccgaa
     3421 tgggtgtcgt taatgaagcg cgaaccctcg ctgtcggcgc ccgtcgtcac gaagttgagg
     3481 atgtcggtct gttccatggg atcatgttcc caatggtgaa agccgatcag tttcaaacgt
     3541 cccggaccga gcgcaaaatc atagtcacca ttaatgtcgc cgttatagcc ggtcatggcg
     3601 accgtatccg tgcgactgcg caactccccg ctcgactcga cgcgcgtgtc gctgatgtgc
     3661 tgcgggttcg tgtagggagc gtaaccgaga ttgaggttgc cgatggacga gcccggaccg
     3721 tggatcgtga acttcgcctg cgaattggcc tgttcggatt ccgagtgata gacctcgtgg
     3781 cgctcttcgg taagcacatg gttcgcatca tagatgtaaa tcgggccgcc gatgccaccg
     3841 cgtccatagc tgtttcttac cgacaacgtg taatcaactg gcccttctga tcccgaataa
     3901 ctcaccgacc cgccgaggag ctcgggctcg gtaaagtgcg accggccgtt gaggtcccac
     3961 tcgaattggc cagaggcctt tcggttcggc ttgaggatca cattggcgac ctcgcccgac
     4021 agtccggcga tgccgaggct cgcggcatcg acgatctcga tgcgctcgac tccagatgcc
     4081 ggcgttcgct gaagtaagtc gacggcaccg gtcttattgg cgacacgctg cccgttgatg
     4141 aggacattct ccgatgcctg gccaagaccg cggttggtcg tgtcgacggt ctggatggtg
     4201 aaaccgggta tttcggatac catgtcgtag gccgttttcg gtgcgaaccg ggcgaagtcg
     4261 gcaagagtgt agatgcgcgt tgccggcgcg gctgtcctcc cacctgcagt cggagcgacc
     4321 gtcggaccac ttgctggcgc tgtttgcgcg attgcagcaa ccggaagtac caaggtaatt
     4381 ccagccaaga gacacgcgcg tctaagtaag agcaccgggc caatctccgt attcgcacgt
     4441 ttgtgctaca tttgtagcgt gctacatttg tagcgacgta cttgcaagcc caatcgccca
     4501 attggcgccg tgttgtcgta ttaatacgct aaatggaatt tgcgtccggg gcaagcgcct
     4561 gccttgcctc aaggccgcag cttgctactc agcctcgcat gcccgaccgc atcgatccgg
     4621 tttcgctcgc agccgacctc atccgctgcc aaagtgtgac ccctgccacg gggcctgtgt
     4681 ttgacattct ggaccaagcg ctgagctcgc tcggctttgc catccatcgc tgggtgatgg
     4741 gcgaaccacc cgacggcccg accgagaaca tggtcgccat tcgcgggact ggaggaccgc
     4801 attttggctt tgccggccac cttgacgtcg ttcctccggg cgagggctgg agcagcgatc
     4861 ccttcgcggc ggtgattgcg gatggggtcc tcgtcgggcg cggcgccaac gacatgaaag
     4921 gggccattgc cgcttatgtt gcggcgctct ccaggattga tcggcatggc gggacgctgt
     4981 cgctgatgat caccggcgat gaggaaggtt attcaaccta cggcacgcca cgaatcatcg
     5041 actggctgaa cgaacgcgcg atccggcctg acatgattct catcggcgaa ccaacctgcg
     5101 ttgaccgatt gggcgacacg gtcaaaatcg gccggcgcgg ttccgtcaac atgtggatcg
     5161 aggtaccggg cgtccaggga catgtcgctt atccccaccg cgcgaccaat ccggttccgc
     5221 cgctcgcgcg cgtgatcgcc gctcttgatg cgctgcatct cgatgacggc accgaccagt
     5281 tcccgccgtc gaacctcgag ttcaccgccg tttcgacgcc gaccacggca agcaatgtca
     5341 ttccaggaag tgcgacggca cagctcaaca tccgcttcaa caatttgcag cgcggcaccg
     5401 atctcgtcgc tctcgtcgag gaaatcgcga agcgcgaagc gcccggagca agcgttcgag
     5461 cacgaatttc tggcgaggca tttctaacgc cgccgggtca gctctacgat gtcgtcgtcg
     5521 ccgcgatcga agaggaaacc ggtctcaccc ccgagctttc aacaagcggg ggaacgtcgg
     5581 acggtcgttt cctcatccag ctctgcccgg tggtcgattt tggactaccc aatgcgacga
     5641 tgcacaaggt cggcgaatgt gcctcagtcg acgacttggc cacgctctca aggatctatg
     5701 aaaacatcct caagaaggtc gtgccactag cctgagcatg cacggcaagc cttggcgtcc
     5761 gaacgcccgc gtcgatggcc accgtccaaa acacgagagc taggcgaccg acttcgattt
     5821 gcggccgcgg ccgtttcgag tccaggcaag gaactcctgt tcgaacatcg gctgcgcaaa
     5881 gacaaatccc tgcacggtat cgcaccccat tgcgcgcagt atgtctgcct gggcaaccgt
     5941 ttcgacggct tctgcaacga tctcgcactc gacgcccttg atgagctgaa ggacggcctg
     6001 gacgatgatc cgcgctttct cggaatgttc aatgtcggca atgagcgact gatcgagctt
     6061 cactcggtca agcggcatcg agcgaagtcg cgcgatattc gaatagcctg ttccgaaatc
     6121 gtcgatcgcg atttgcgcac cgtcgcgccg gagacccgca atctcggcga gcgttgccgc
     6181 gccagcctcc atcgccgcac tctcggtgaa ctcgagctcg atcatcgaca aaggaacggc
     6241 ggcatcggca aacgtctggc gaagcttggc gaaaaaatcg ggacgctcga cttgccgtgg
     6301 cgaaatattg aaagcgacac ggccgtcaaa cccttggcga tgccaggtgc cgagcgtcgc
     6361 cgcgacctct ccaatgaccc actcaccgat ttccgcgaca aggccggtcc gctccgcaac
     6421 aggaataaag cttgcaggaa gtcgcagccc atcgcgcgga tggttccagc gcagaagcgc
     6481 ttcggcaccc gcgaactcac ccgtgacgag gctcatttgt ggctggaaag caagcacgaa
     6541 ctcaccgcgc tgaacggctt ccgtcagtgc cttctcggta tcgattttct cctggtgctc
     6601 ggcggcaagc tgcgcgttga agaggtaatg ctgccctccc ccgcaggctt tcgcctggta
     6661 catcgcaatg tcggcagcac gcatcagcgc ttcgatactt gtcccgtgat cgggtgaaat
     6721 ggcgattccg atcgacgcgc cgacgtcgac gctgtgagag ctcagctcga acggttcgga
     6781 gatggcgagc gcaatgctcc gggcaacacg ctcgatttcg ttgatcgaat tgacctctgg
     6841 aaagaagatc gtgaattcat cgccggccaa tcgagcaaga agcggtcggc tcttggcatt
     6901 gccagtgaac tcggcattca cgaccacgcg caggcggttc gcaaccatca ccaggagctg
     6961 gtcgccgcgt gcatggccga gactgtcgtt caccatcttg aagcgatcga gatcaatgaa
     7021 cagcattgcc gcggtttgcg ggactagaga gtccgcgtac accgcgctca tcagcttgtc
     7081 ggcctcggag cgaaaatgca gtcggttggg caatgcggtc accggatcgt acattccaag
     7141 cgcctgagca ttctcgatcg acgcgcggac ttccgcaaag aggctatcca cggcggcagc
     7201 aagctttggc atgttgcgct gcaccgatgg cggtgccggg gaaacgagat cgccgtcttc
     7261 gaccgcaaga agccgttcgc caagcgcggc aagagcgcga gcactttcgc tattcggccg
     7321 ctcggccgcg acatagctga tcaataggca aaaagtgccc gcgatcaggg cggcaaggat
     7381 cttctcgtcg agcgctgtta aatagaggag agcggcgagc gaaaacacga acgaggcgaa
     7441 tcccgcagcg caggacaaca ccgcattact aatcttctgg gctgtccctg cagtcatcta
     7501 gctcgtgcgt ctcgccggcg gaaactctcc gtctctcgat gttcggtaat gaatcgaggt
     7561 taaaaatccg tcacggaacg ggcggctttc gtctcagcac caggtagagg ctgccgccgc
     7621 cgccgtgacg ccggtgcgcc cctcgaaccg ccgcaatgtg ccgcgcgtgc cgcgacgccg
     7681 caagccaatc atggaccgcc gccctgatcc ttccgcgcag tatcggcggt tcacccggac
     7741 ggtgatggcc cgtaatgaga agaaccacgc gctcgccgcg cgcaatggcc tgctcgagcg
     7801 agcggtcaat cgccgtccag gcggtgtcga ggttcattcc atgaagatca agaatgcggt
     7861 ctggctcgac cgagccgctt cttagccgct tgtcccaact gccatcgagc gttcgctcgc
     7921 tgatcggcac cggcttcact cttgcgacct tgccgactgg cgccgcggtc attttggcat
     7981 gagacttggg acgaacttcc tgttgggctg gagcctcgcg ggaaatgcgc gcttcacgcg
     8041 agagcgggcg gatggttgtc gccacgcggt tccacagttc cgcttcctca gggctgagcg
     8101 atcgcacgcg ccgcgacgcc cttgggtacc aggatcaagg cttgtccgtt cgcggacatt
     8161 ccgccggcaa ttgccaccgc ctctggtccc gctccccaga aggtatcgaa gcggttcggt
     8221 cccttgatcg cgccgccagt gtcctgcgca acccacaatc catcgacctc gcgccggtcc
     8281 gcgtccgtga ggtagattgg tgccccgaga ggcacaaagc tcggatcggc ggcaacggtc
     8341 gaacgctcgg tcaccggcac gttgagcgcg ccgagcggcc ccgggccggt cagttccttg
     8401 aagaagacgt aagagaggtt ctcgcgcatc aattcgcgac cctggtccgg gttggcccgg
     8461 atccaatcct tgatcgcctg catgtttgcg ccaccgggag ggaggattcc gcgatcgcgg
     8521 agcagccgtc caatggcaac ataatcacgg ccgttctggc cggcatagcc cacgcgcatg
     8581 atgcttccgt cgtcgaagcg gatccggccc gagccctgaa tctcgaggaa gaacaggtcg
     8641 accgcatcct tcgcccaggc aagaacgatc ccctgggtcg ctagcgcccc gtcctcgatt
     8701 tcgggccggc tgaagtaggg aacgcaggtg ccgttttcgt cgatgcggcc ccttcccgtc
     8761 gttccgtcgg gcctcgtgca gcgcacgagg tccggtggca ggccatagat cggaacatag
     8821 cccggctgag gcgttcgaga tcccgcgatt tcgggctcgt aatagccggt cgcgaaggca
     8881 tggccgtcgc cgaccttcag ccaatcaaag tcatagtaga aaaagcccga cgcgaaacta
     8941 ggatcaagcg tcgccgcctg cgcacagaca gcccgccagt cagcgggctc agtaatgccc
     9001 gagccgtcat tgcgagtcat tactgcagga cagctcttct tgaacgcgct caaggcgcgc
     9061 gcagcatcgt cagcagctac tactcggggg tggtcaagcg tcaccccagt gctgatcgcg
     9121 ttgcggccaa ctggcgatgg aggaaccggt ggtggcggtg tcggggtgac cgcggccggt
     9181 ggcgggggaa cagttgtttc gggaggcgca atgggctttg ttgcgcaagc ggcgagaaga
     9241 ctcaggctag cggcaagcgc cgctccaaga agaagcctca ctcttcctcg tcggtttcga
     9301 tcagcagcca gttggggtcg cgtgagctcg tgtcgcggcg gaaagtccac aggtcacggg
     9361 tctgcaccgc atcgctaagc gaaccagcga tgacctgccc ttccgcgttg cgcgtcaccg
     9421 ccgcgatatc ggcttcgaac cggacggtga tgacggcgac gccacgctca agtgccgctt
     9481 ccgagattac cgcctgctcg atcgcaacca gacgattatc gagggtcact ccgtccttgt
     9541 tgcgctgttc aacagcgcct tcgaaggccg cgaggacgtg ctcgtcgaca tggcccttga
     9601 gcgcgctgag atcacccttc cagaaggctt cgagaatcat tcgataggcg ctctttgcgc
     9661 cctcgaggaa acgggcgacg tcgaacgtct ggtcggcggc gacgatcgcg cgaacgccgg
     9721 gacccgcggt tggaacgaac gccatgtctc ccgcttccgc gggcgcagcc tggggcgccg
     9781 caggctgcgt caccggcgca gcggcgcgcg gctccgagtc ggcgggtttc aggatcggct
     9841 gctgctcatg tccagtgcgc tcgccgagca cgctgtagag gcgcaagccg atgaagaggg
     9901 caacaagggc taggatgaca atgacggcca acttttgatc ctaagtatct cagccccaca
     9961 acatagtgtg cttatcgtaa atattccaac accagccaac gcacgaacgt ggcattgcgc
    10021 cccataaatg cgactgctag gcgctcattg cctgaaacgc cgctgcaacc aagcggctcc
    10081 agaacagcac aacattttgt aaggacagcg ataaatggcg gaccaggaac ccagtgcggg
    10141 cccaaacggc gcgggtgaca acaacttcca gccgcaagtt tcaatcctcg cgcaatatgt
    10201 gaaggacctt tcggtcgaga acccaagcgc accacaggtc tattcctggc aggttcagcc
    10261 aaacctcgac gtccagttca acctcaacgt tcagccgtcg ggcgacaata tgcacgaagt
    10321 gacgctgaaa ttcgatatct cggcgcgctc ggacaatggc acgcatttcg t
//
LOCUS       DASRBJ010000300         2832 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_602929,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000300 DASRBJ010000000
VERSION     DASRBJ010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_602929"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            206..490
                     /locus_tag="VE968_08320"
     CDS             206..490
                     /locus_tag="VE968_08320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapA
                     domain-containing protein"
                     /protein_id="HZU51860.1"
                     /translation="MHFLKTLFWVLIAVVVALFASHNWFDVTINLWGDLQADIKLPVL
                     LLLVFLIGFAPTWGFMRTKLWSQSRRIEAMERSRVASVPEPVSEESEPVV"
     gene            487..1173
                     /gene="pyrF"
                     /locus_tag="VE968_08325"
     CDS             487..1173
                     /gene="pyrF"
                     /locus_tag="VE968_08325"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010408275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HZU51861.1"
                     /translation="MNPIFVAIDTPQIDRAIAITKAVRGHAGGVKLGLEFFAAQGRGG
                     IETIAALGLPVFLDLKLHDIPNTVSKAVEAIAPLKPAILTVHAGGGEAMLRAAKKAAP
                     AGTKVVAVTVLTSLDEADLACTGVASAPSDQVVRLAMLARDSGVDGVVCSGAEVANVR
                     GLWPEGTLVVPGVRPGGTQSADQKRVVTPREALESGASVIVIGRPITGASDPARAIVE
                     IASSLTHMPA"
     gene            1192..2049
                     /gene="accD"
                     /locus_tag="VE968_08330"
     CDS             1192..2049
                     /gene="accD"
                     /locus_tag="VE968_08330"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007705166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HZU51862.1"
                     /translation="MSWLSRVRNGIPFLPKRQTAENLWHKCSKCGTMVFVKEWEENYN
                     VCPRCNFHDRIGPTKRFQQLFDAAEYELLPSPEVREDPLKFRDTKRYSERLKTARTTT
                     DERDALVNARGKIGGQDVVVGVQDFAFMGGSMGIAVGATIVAGIRTAIADGAPYILFT
                     AAGGARMQEGILSLMQMPRTTVALQELKEAGLPYIVVLTDPTTGGVTASYAMLGDVQL
                     AEPGALIGFAGQRVIEQTIREKLPEGFQRAEYLLEHGMIDMVVSRADLKERLSLLVSY
                     LAPQTREAA"
     gene            2166..>2832
                     /locus_tag="VE968_08335"
     CDS             2166..>2832
                     /locus_tag="VE968_08335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HZU51863.1"
                     /translation="MLSPAGDRLGLERITELLERLGRPQEQLPPVFHVAGTNGKGSTV
                     AFLRAALEASGQKVHVFTSPHLVRFNERIRIAGKLVDDERLSELLAQVLDVGSGVEPS
                     FFEVTTAAAILAFAQTKADACILEVGLGGRLDATNVIERPLVTGIANLALDHQQFLGE
                     GLGDIAAEKAGIAKAGVPLITQLYPPEVTTRIIEIARARGAPVLARGTTWDAIVRQGR
                     LHYN"
BASE COUNT          571 a          848 c          840 g          573 t
ORIGIN      
        1 gcgcccatga tcagcgcaag cgcgccaagg ccaagcttct gtgccttttg caaatcaacc
       61 aatctcccca ccctcaactt cgctgtggcg gttgggcttc ccggtctcaa cgccactacc
      121 agtcacttgc gacgaattga ctcatgggcg cgacgaacga gaccctcgct agcgttcgac
      181 gcacctctcg cctaaacagc gatccatgca ctttttgaag accctctttt gggtcctgat
      241 cgccgtcgtg gtggcgctat tcgcgagcca taactggttc gacgtcacca tcaatctttg
      301 gggcgatctc caggccgaca tcaagcttcc ggtcttgctt ctcctcgtgt ttctgattgg
      361 cttcgcgcca acttggggtt tcatgcgaac gaagctttgg tcacagagca ggaggatcga
      421 ggcaatggag cgcagtcggg ttgcgtcagt gcccgaacca gtcagtgagg agagcgagcc
      481 cgtcgtatga acccgatatt tgtcgcaatc gacacaccac agatcgaccg cgccatcgcg
      541 atcaccaagg ccgtgcgggg tcatgccggc ggcgtgaagc tcggccttga gttcttcgcc
      601 gctcagggtc gcggcggcat tgaaacgatc gccgccttgg ggcttcccgt ttttctcgat
      661 ctcaagctcc acgacatacc aaacactgtc tccaaggctg tcgaggcaat cgcgccgctc
      721 aagccagcaa tactgaccgt ccatgcgggc ggcggagaag caatgctgag ggctgcaaag
      781 aaggcagcac ccgccggcac caaggtcgtc gccgtgacag tgctcaccag tctcgacgaa
      841 gcggaccttg cctgcacggg agttgcttcc gcgccgtcgg accaggtagt ccgccttgca
      901 atgttggcgc gggacagcgg cgttgacggg gtggtctgtt ccggtgccga ggttgcgaac
      961 gttcgcggtc tctggccgga aggcacgctg gtcgtacccg gcgtccggcc aggtggaacc
     1021 caaagcgctg atcaaaaacg cgtggtcact cctcgcgaag ctctcgaaag cggtgcatca
     1081 gtcatcgtca ttggacggcc aattactggt gcgagcgatc ccgcccgggc gatcgtggaa
     1141 attgcaagtt cgctcaccca catgccggcc tgaaatggaa agatatcatc gatgagttgg
     1201 ctaagccgag ttcgcaacgg aattcctttc cttccgaagc gccagactgc cgaaaacctt
     1261 tggcacaaat gctcgaagtg cgggacgatg gtgttcgtca aggagtggga ggaaaattac
     1321 aacgtctgcc cgcgctgcaa cttccatgac cgcatcggac cgacgaagcg cttccagcag
     1381 ctgttcgatg cggccgagta tgagctcctc ccctccccgg aggttcgcga ggatccgctg
     1441 aaattccgtg acacaaaacg ctactccgag cgcctgaaga cggctcgaac aacgacagac
     1501 gaacgcgatg cactcgtgaa cgcacgcggc aagatcggcg gccaagacgt ggtcgttgga
     1561 gtgcaggact ttgcctttat gggcggttcg atgggcattg ccgtcggcgc cacgattgtc
     1621 gcgggtatta ggaccgcaat tgccgacggc gcgccttaca ttctttttac ggccgcgggc
     1681 ggcgcgcgca tgcaggaagg catcctcagc ctcatgcaaa tgccacggac gaccgtcgca
     1741 ttgcaggaac tgaaggaagc ggggcttccc tatattgttg tcctcaccga tccgaccacc
     1801 ggcggtgtca ccgcctccta cgcaatgctt ggcgatgtgc agctcgccga acctggcgcg
     1861 ctcatcggct ttgctggaca acgggtcatc gagcagacga tccgcgagaa actcccggag
     1921 ggcttccaac gcgcggagta tctcctcgaa cacggcatga tcgacatggt tgtctcgcgc
     1981 gctgatctta aagagagatt gtcgcttctc gtgtcctatc tcgcaccgca gacgagagag
     2041 gctgcatagg attttcgcgt ccaatgatgg ttggcagacg cgcctcgtca cggaaggtag
     2101 gagattaagt ggatttcgcg cgctcaactc acgcgggagt caaagcgcaa ctcgatcggc
     2161 tctcgatgct ctcgccggca ggagaccggc tcggccttga gaggattacc gagctccttg
     2221 agcgcttggg ccgccctcag gagcaacttc ctcccgtttt tcacgtcgcg ggcacgaatg
     2281 ggaaaggctc gacggtcgcc ttcttaaggg ctgcactgga ggcaagcggc caaaaagttc
     2341 acgtatttac cagtccgcac ctcgttcggt tcaatgaacg gatacggatt gcaggcaagc
     2401 tcgtcgatga cgagcgattg tcagagcttc tcgcgcaagt gctcgatgtc ggaagtggcg
     2461 tcgagcccag tttcttcgaa gtaactacgg ctgcggcaat tcttgcattc gcgcagacca
     2521 aggcggacgc ctgcatcctt gaagttggtc ttggcggtcg tctcgatgcg accaatgtca
     2581 ttgagcgacc gcttgtgacg ggaattgcga acctcgcgct cgatcaccag cagtttctcg
     2641 gcgagggctt gggcgacatt gccgccgaga aagcggggat tgcgaaggct ggcgtaccac
     2701 tcatcaccca gctctatccg ccagaagtca cgacccgcat catcgagatt gcgcgtgctc
     2761 gtggcgcgcc agtgcttgct cgcggcacga catgggatgc aatagtccgg cagggccgac
     2821 ttcattacaa cg
//
LOCUS       DASRBJ010000301         2145 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_341131,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000301 DASRBJ010000000
VERSION     DASRBJ010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_341131"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..679
                     /locus_tag="VE968_08340"
     CDS             <1..679
                     /locus_tag="VE968_08340"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HZU51864.1"
                     /translation="DQYSVWLHQLLLLEGFSREEVDGVIIGTVVPRALHNLEVLSEKY
                     FRKTPLVAGQGAASWPMPLDVDEPQNVGADRALNAIAAHAKYAGDLLVVDFGTATTFD
                     VISPAGAYSGGIIAPGINLSLDALVNAAAKLPRIAIEAPADNNVIGRTTYSQMLIGIY
                     WGYVAMLEGLIERLKSELGRPATVIATGGLATLFDKRTKVFDAIEPDLTIQGLSLLYD
                     MAMSGAK"
     gene            676..>2145
                     /locus_tag="VE968_08345"
     CDS             676..>2145
                     /locus_tag="VE968_08345"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HZU51865.1"
                     /translation="MIPGEELLFVALGGSGEIGMNVNLYGCRGQWIMVDLGLTFADPS
                     YPGVELILPDLEFIENQQQRLAGIVLTHGHEDHIGALPYLADELKAPLFATPFTAGLI
                     AGKLEEEGLTGQVKLNTVPRGGTVELGPFRVSFVALSHSIPEGNGVLIETPFGNVFHT
                     GDWKIDETPVIGEAPSPQTLRAIGDEGVLALVCDSTNVFQDLPSGSEESVHAGLLAKV
                     SEAKGRVLVTTFASNAARLQTIGRVAVETGRKVCIAGRSLERILRVAQATGYLLDFPK
                     IISFDEAMRLPRDEPLIIATGGQGEPRAALGRIAAGTHDIKLSQGDTVIFSSRIIPGN
                     EVAIGRIMNQLSDLGVRIVTERQAHVHVSGHPGRPELVEMYNWVRPRIVVPVHGEARH
                     LAEQARLALSHGVPEAVVQKNGDVIRLAPGEAKKVDEVRVGQLVLDGDVILPADGSTV
                     SERRRIGYGGLITVALPLGDDGNLAGSPLIRPFGVPVEED"
BASE COUNT          415 a          620 c          665 g          445 t
ORIGIN      
        1 tgaccaatat tccgtgtggc tgcaccagct cttgctgctt gaaggctttt cgcgcgagga
       61 ggttgacggt gtaatcatcg ggactgtcgt tccgcgggca ctgcacaatc tcgaagtctt
      121 gtccgagaaa tatttccgga agacaccgct ggttgccggt caaggcgccg cctcctggcc
      181 aatgccgctc gatgtcgacg agccgcagaa cgtgggtgct gatcgtgcac tgaatgcgat
      241 cgcagcgcat gcgaaatatg ccggcgacct tctcgtcgtc gattttggaa cggcaacgac
      301 cttcgatgtg atcagtcccg cgggcgcgta cagcggtggc atcattgctc cagggataaa
      361 cctgtcgctc gatgcccttg tgaatgccgc cgcgaagctt ccgcgaattg ccatcgaagc
      421 gcccgccgac aacaacgtca ttggccgcac cacttacagc caaatgctga ttggcattta
      481 ctggggttat gtggcgatgc tcgaggggct catcgaacga ctgaagtccg agctaggccg
      541 ccccgcgacc gtcattgcca ccggtggtct tgccacgctg ttcgacaagc gaacgaaagt
      601 gttcgacgcc attgaacccg atcttaccat ccaggggttg agcctcctgt acgacatggc
      661 gatgagcggc gcgaaatgat cccgggtgaa gagctgctgt ttgtcgcgct cggtggttcg
      721 ggcgagatcg gcatgaacgt caacctgtat ggctgccgtg ggcagtggat catggttgat
      781 ctcgggctta catttgctga tccgagctat cctggtgtcg agttgatcct tcccgacctc
      841 gagttcatcg aaaaccagca gcaacggctt gccgggatcg ttctgacaca cgggcacgag
      901 gaccatatcg gcgcgcttcc ctatctcgcc gacgagctca aggcgccgtt gtttgcgacg
      961 ccgttcaccg ccgggctgat tgcggggaag ctcgaagagg agggactgac tgggcaggtg
     1021 aagctcaaca ccgttccacg cggcggaacc gttgagcttg gtccgttccg agtgagtttt
     1081 gtcgcccttt cgcactccat acccgaaggc aatggcgtgc tgatcgagac gccgttcggc
     1141 aacgtcttcc atacgggtga ttggaagatc gacgagacgc cggtgattgg agaagctcca
     1201 agcccgcaga ccctccgcgc aattggtgac gagggggtac tggcactggt ttgtgattcg
     1261 acgaacgtct tccaggactt gccgtcgggc tccgaggaaa gcgtgcatgc cgggcttctc
     1321 gccaaggtca gtgaagcaaa ggggcgcgtt ctggtcacga cctttgcatc caacgccgct
     1381 cgacttcaga cgatcgggcg ggttgcggtc gagacgggca ggaaagtgtg cattgccgga
     1441 cgatcgctcg agcgaatcct tcgtgttgct caggctaccg gctatcttct cgattttcca
     1501 aagatcatca gtttcgacga agcaatgcgc cttccgcggg atgaaccgct aatcatcgca
     1561 actggcggtc aaggcgagcc ccgcgctgct ctcgggcgaa tcgccgccgg tacgcacgac
     1621 ataaagctca gccaaggcga tacggtcatc ttctcatcgc ggatcattcc cggaaacgag
     1681 gtcgcgatcg ggcggatcat gaaccagctc tccgaccttg gagttcggat cgtcactgag
     1741 cgacaggcgc atgtccatgt atccgggcac ccaggccggc cggaattggt cgagatgtac
     1801 aattgggttc gtccgaggat cgttgtcccg gtgcacggcg aagcgcgcca tctcgcggag
     1861 caggcacggc tagcgctctc gcatggagtg ccggaggcgg tcgtccaaaa gaatggcgac
     1921 gtcattcgtc tcgcgcctgg cgaagcgaag aaagtcgatg aggttcgagt cggccagctc
     1981 gtccttgatg gggacgtcat cctcccggcc gatggttcga ccgtaagcga gcgccgccgc
     2041 atcggttacg gcggactaat caccgtcgca ttgccgctcg gcgatgacgg caatcttgcc
     2101 ggttcgccgc tcatcaggcc gtttggagtg ccagtcgaag aagat
//
LOCUS       DASRBJ010000302         2940 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_185002,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000302 DASRBJ010000000
VERSION     DASRBJ010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2940
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185002"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..653)
                     /gene="recO"
                     /locus_tag="VE968_08350"
     CDS             complement(<1..653)
                     /gene="recO"
                     /locus_tag="VE968_08350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HZU51866.1"
                     /translation="MRSSTKAIVCALRNHGEHGAIVRLLTPDQGLVAAYVRGARGRRM
                     RPVLIAGNVVQAELAARTETQLPQASLELIHSRGPLLGEPLPAAAIEWATVLTATALP
                     EAQPYPRLYDALEALLDMIEAAPSANGWGAILVRYELLVLAELGFGLDLDRCAVTGKN
                     DDLVAVSPRSGRAVSAAEAEPYARKLLPLPRFVREGGEASWPEIAEGMELTGHFLLR"
     gene            complement(650..2596)
                     /gene="uvrC"
                     /locus_tag="VE968_08355"
     CDS             complement(650..2596)
                     /gene="uvrC"
                     /locus_tag="VE968_08355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HZU51867.1"
                     /translation="MDRTPADRPDHPRAAERFNEEQATHAVRGADQPDLEQGIAAIRE
                     VLKTLPSRPGVYRMQDARGDVLYVGKARTLKNRVTNYTQVTRLPKRLQRMVAQTRSMT
                     IVTTRTEAEALLLEAQLIKRFRPPYNVLLRDDKSFPFILLREDHAFPRIQKHRGARRI
                     KGQYYGPFASAGSVTRTLNALQKLFLLRSCSDSFFANRSRPCLLYQIKRCSAPCVGRI
                     SDDNYRELVGEAKEFLGGRSTGVQSRLSKLMAEAAERRDYELAAVYRDRLRALTYIQG
                     SQTVHAEGLGDADVFALACKAGTMSIQAFFIRGGQNWGHRAFFPAHTSEVPEAEVLSS
                     FLVQFYEDMPPPKRILLDRELGDRELLEEALSARAERKVVIEVPQRGARARLLEQARR
                     NAEEALDRRLAETTTQGKILRELADTFELGDVPKRIEVYDNSHIMGTNATGAMIVAGP
                     EGFRKNNYRKFNIKRPETKPGDDFAMMREVLERRFARLEKEDPDRQSGEWPDLLLIDG
                     GKGQLSAVCEVMEDMGVHDVPIVGVSKGPDRNAGRETFHLPGGREITLPPNSALLFYL
                     QRLRDEAHRFAIGTHRAKRAKNLTTSTLDEVPGIGPNRKRALLMHFGTARAVKGAALE
                     DLEKAPGISGAMARQLYDYFHPRG"
     gene            complement(2635..>2940)
                     /locus_tag="VE968_08360"
     CDS             complement(2635..>2940)
                     /locus_tag="VE968_08360"
                     /inference="COORDINATES: protein motif:HMM:NF013353.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036361 - racemase activity, acting on
                     amino acids and derivatives [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HZU51868.1"
                     /translation="LEARGITLVPVDDVWVKEVDRIIFEELAAGRVVRDSQRKLKTLI
                     TELSKQKVQAVVLGCTELVLAVDVRANVLPVYDTTAIHARECVEWILADEEPARVAA"
BASE COUNT          528 a          913 c          927 g          572 t
ORIGIN      
        1 tgacgcagca ggaaatgccc tgtaagctcc atcccctcgg caatttcggg ccaggatgct
       61 tcaccacctt cgcgtacgaa ccgcgggagc ggcaagagct tgcgcgcata aggttcggcc
      121 tcagccgcac tgaccgctcg tcccgaccgt ggactgacgg caacgaggtc atcgttcttg
      181 cccgtgacgg cgcagcgatc aaggtcgagt ccaaagccaa gttcggcaag aaccagtagt
      241 tcatagcgaa cgaggatcgc accccagccg ttcgccgagg gtgcagcctc gatcatgtcg
      301 agcaatgcct cgagggcgtc gtacaatcga ggataaggct gcgcttcagg caaggccgtt
      361 gccgtcaaga ccgtcgccca ttcgattgcg gctgccggga gcggctcgcc aaggagcgga
      421 ccccggctgt ggatcagctc gaggctcgcc tggggcagct gggtttccgt tcgcgcggca
      481 agctcggcct ggacgacgtt accggcaatg aggaccgggc gcatccggcg cccgcgcgcg
      541 ccgcggacat aggcagcaac caatccctgg tccggcgtaa gaagccggac aattgcacca
      601 tgctcgccat ggttgcggag cgcgcagact attgccttgg tactgctcct catccgcgtg
      661 gatgaaaata atcgtagagc tgccgagcca ttgcgccgct gatccccggc gctttctcaa
      721 gatcctcgag cgccgctccc ttcaccgcgc gcgccgttcc aaaatgcatg agcagagcgc
      781 gcttgcgatt tggaccgatg cccggaactt cgtcgagggt cgatgtcgtg aggttcttcg
      841 cacgtttcgc gcggtgcgtt ccgatcgcga agcggtgcgc ttcgtcacgc agacgctgaa
      901 ggtagaacag caaggcggag ttgggcggca atgttatttc gcggccaccc ggcaaatgaa
      961 atgtctccct gccggcattc cggtccgggc cttttgacac acctacgatc ggcacgtcgt
     1021 gaacgcccat gtcctccatg acctcgcaca ccgcggagag ctggcccttc ccgccgtcga
     1081 tgagcaggag atccggccat tcgcccgatt gccggtcggg atcctctttc tcgaggcggg
     1141 caaatcgccg ctcgaggact tcacgcatca tcgcgaaatc gtcgccgggc tttgtctccg
     1201 gacgctttat gttgaacttg cggtagttgt tcttgcgaaa cccctcgggg cccgcgacga
     1261 tcattgctcc cgtcgcattc gtccccatga tgtggctgtt gtcgtagacc tctattcgct
     1321 tggggacatc accaagctcg aacgtgtccg caagctcgcg aaggatcttg ccctgggtcg
     1381 tcgtttcggc gagccgccga tcgagcgctt cctcggcatt gcgtcgggcc tgctcaagga
     1441 gcctggcgcg agcgccacgc tgcggaactt cgatcacgac cttgcgctcg gccctcgccg
     1501 agagcgcttc ctcgaggagc tcgcggtcac caagttcccg gtcgaggagg atgcgcttgg
     1561 gcggcggcat gtcctcgtag aattggacga ggaagctcga caagacttcg gcttcgggga
     1621 cttcgctggt gtgggctggg aagaaagcac gatgacccca attctggccg ccgcgaatga
     1681 agaatgcctg gatcgacatg gtcccggcct tgcacgcgag cgcgaagacg tcggcatcgc
     1741 cgagaccttc ggcatgaacg gtctggcttc cctggatgta ggtcaatgct cgaagcctgt
     1801 cccgatagac ggcggcaagt tcataatcgc gccgctccgc tgcctcggcc atgagcttcg
     1861 acaggcgcga ctgaacgccc gttgatcttc cgccgaggaa ctccttcgct tcgccgacga
     1921 gctcgcgata gttgtcgtcg ctgatgcggc caacgcaagg cgctgagcag cgcttgatct
     1981 ggtagagaag acagggccga gaccggttcg caaaaaagct gtccgagcag ctccgaagca
     2041 ggaagagctt ctggagcgcg ttcagcgttc gcgtgaccga gccggcgctt gcaaacggcc
     2101 cataatattg gcccttgatg cgacgagcgc cccggtgctt ctgaatgcgc ggaaacgcgt
     2161 gatcttcacg aagcaggatg aacgggaagc ttttgtcatc tctcaagagc acgttgtacg
     2221 gcggtcggaa gcgcttgatg agctgtgctt cgaggagcag cgcttcggct tcggttcgcg
     2281 tcgtaacgat ggtcattgac cgagtttgcg ccaccatccg ctgcagccgc ttgggaaggc
     2341 gtgtaacctg cgtgtagttt gtcacgcggt tcttcaaggt tcgcgccttg ccgacataaa
     2401 gcacgtcccc gcgcgcatcc tgcatgcgat aaacgccggg ccgtgaaggc agcgtcttca
     2461 gcacctcgcg gatggcggca atgccctgct cgaggtccgg ctggtccgct ccacgcacgg
     2521 catgggtcgc ctgctcttcg ttgaagcgct cggcggctct cgggtgatcg ggacggtcgg
     2581 ccggggttcg gtccatgcaa tctatttagg cggcgcaggg gcgcctatcc agcgtcacgc
     2641 ggcgacgcgg gcgggctcct cgtcggcaag gatccattcg acgcattcac gcgcatggat
     2701 ggcggtcgtg tcgtaaaccg ggagaacatt ggcgcggacg tcgacggcga gcacgagttc
     2761 cgtgcagcca agcaccacgg cctggacttt ctgcttggaa agttccgtga tcagagtctt
     2821 gagcttgcgc tggctgtcgc gaacgacccg gccggcggcg agctcttcga agatgatgcg
     2881 atcgacttcc ttcacccaaa catcgtcaac cggcacgagc gttatgccgc gcgcctcgag
//
LOCUS       DASRBJ010000303         2470 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_390762,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000303 DASRBJ010000000
VERSION     DASRBJ010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2470
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390762"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1260
                     /locus_tag="VE968_08365"
     CDS             <1..1260
                     /locus_tag="VE968_08365"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HZU51869.1"
                     /translation="KERHSRVSSVRDLVIIGGGAAGIGAARQAHAQGVEPLIVEAKDR
                     LGGRAYTIEWNGFRLDLGCTWMHSAERNSLRVEAERLGAKIDRRGTNWFGQYRDLGWS
                     RADQDEAFAAFEQLENRMNEDAPQSDRAADALVPNGKWNQWLEAICGYINGAPLANVS
                     VEDWLAYDNASSAQNLRLADGYGHLLCSLGKKFDHRLNTCVTAISRRTQRVELETSSG
                     VIEAKRVIVTVPTSTLWRIRFDPPIDEVLDAAEHLPLGLANKLFLALSEPEEFPFDAH
                     LVGNPHSSETGSYFLRPMGIPVVEGFFGGNGARTLEELGEKGAAAFAIDELAALLGSS
                     FRKRVQALQMSSWGHEPFIEGSYSHACPGFAAARELLANAGDDRIVFAGEAVSRTDYS
                     TAHGAYDSGIRAVRKLLATTLAAREPQ"
     gene            1319..2197
                     /locus_tag="VE968_08370"
     CDS             1319..2197
                     /locus_tag="VE968_08370"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HZU51870.1"
                     /translation="MGAPQRRSVAESNTCGRLDVAHYLREGYAVVRGFFDQEEVRQLA
                     CALDQLYREGVAHGRCFRHANLFYNVARESEASEPFVRMVQWPSYHQPTLNSVRLDPR
                     FVDLLQPLVGCDLKQIINQVHWKAPGLLGDFAWHQDSRFRRPASAYRNLATSYVQTGL
                     AVDPHTRESGCMKFIPRSHLRGDLSMDDSKFAMGTAMSDDALAAVGLTSADAVDVVLE
                     PGDLALWSPYLVHGSGKNVSSHQRRLYINGYVRAADCDRGEWAFRNGKPVPLGPRPAL
                     VHYEELLQRPWPHYTD"
BASE COUNT          490 a          704 c          756 g          520 t
ORIGIN      
        1 aaagagcgtc acagtcgagt gagttctgtt cgtgacctcg tcatcatcgg tggcggggct
       61 gcaggcattg gtgctgcaag acaagcgcat gcccagggcg tcgaaccgct gatcgtcgaa
      121 gcgaaggacc gcctcggcgg gcgcgcgtac acgattgaat ggaacgggtt ccggctcgat
      181 cttggctgca cctggatgca ttcggccgaa cgcaacagcc tgcgggtcga agccgagcgg
      241 cttggcgcga agatcgaccg ccgagggacg aactggtttg ggcaatatcg tgatcttggc
      301 tggtctcggg ccgaccagga cgaggctttt gccgcgttcg agcagcttga aaatcgaatg
      361 aacgaagacg cgccgcaaag cgaccgtgct gccgacgcgc ttgtgccgaa cggcaagtgg
      421 aaccagtggc tcgaagcgat ctgcggctac atcaacggtg cgccgctcgc gaacgtttcc
      481 gttgaggatt ggctcgccta cgacaacgca tcaagcgcgc agaatcttcg cctggctgac
      541 ggatatggac atcttctgtg ctcattgggg aagaaattcg accaccgcct caacacgtgc
      601 gtgaccgcga tcagccggcg aacgcagcgc gttgagctcg agacgtcaag cggcgtgatc
      661 gaggccaagc gcgtgattgt caccgtgccc acgtcgacgc tttggcggat tcgcttcgat
      721 ccgccgatcg atgaagttct cgatgccgct gaacatttgc ctcttgggct tgctaacaag
      781 ctcttccttg cactcagcga accggaagaa tttccctttg acgcgcatct tgttggaaat
      841 cctcactctt ccgaaacggg aagttatttc cttcgtccga tgggtatccc cgtcgtcgag
      901 ggttttttcg gcggcaatgg cgcccgcacg ctcgaagaac tgggcgaaaa aggcgccgcg
      961 gcttttgcga tagacgagct tgctgcactc ttgggaagca gtttccgaaa gcgcgttcag
     1021 gctcttcaga tgtcgtcctg ggggcatgaa cccttcatcg agggtagcta tagccatgcc
     1081 tgcccgggtt ttgcggcggc tcgagagcta cttgcgaacg cgggtgatga tcgcatcgtg
     1141 ttcgccggcg aggctgtgtc gcgcaccgac tattcaaccg cacatggcgc gtacgacagc
     1201 gggataaggg ctgtccggaa attgctcgcg actacgctgg cggcacggga accacagtaa
     1261 gttattcaaa tttcaataag ttgctgtatt ccttggcacg gggccgggga gactattcat
     1321 gggggcaccg caacgtcggt cagtcgccga aagcaacacg tgcgggcgct tggacgtcgc
     1381 tcattacttg cgcgaaggtt atgccgtcgt tcgtgggttc ttcgaccaag aggaggtgag
     1441 gcagctcgcc tgcgcgttgg atcagctcta tcgtgagggc gttgcccatg gccggtgctt
     1501 ccggcacgca aatcttttct acaatgttgc gcgcgaaagc gaagcgagcg aaccttttgt
     1561 ccggatggtg caatggcctt cctaccacca gccaacactc aacagcgtgc ggctcgaccc
     1621 tcgctttgtc gacctgctcc aaccgctcgt cgggtgtgat ctaaagcaga tcatcaacca
     1681 ggtgcactgg aaagctcccg gacttctcgg cgactttgcc tggcatcagg atagccgctt
     1741 tcgccgcccg gcgagcgcct accgaaatct tgcgacttcc tatgttcaaa ccggcctcgc
     1801 cgtcgatcca cacacacgcg aatccgggtg catgaagttc atcccgagaa gccatttacg
     1861 cggtgatctt tcgatggacg attccaagtt cgcgatggga acggccatga gcgatgatgc
     1921 actcgcggcg gtcggactaa cctccgccga cgctgtcgat gtcgtcctgg agccaggcga
     1981 tctcgcgctc tggagtccat atctagtgca tggatcgggg aagaacgtct ccagtcacca
     2041 gcggcgtcta tatatcaatg gctatgtacg cgctgcagat tgcgaccgcg gcgaatgggc
     2101 gtttcggaac ggcaagccgg tgccgctggg accgcggcct gcgttggttc actatgaaga
     2161 gctgctgcaa cggccatggc cgcattatac tgactgagcg tcgcgactcg ccgcttcgcg
     2221 caacggacga gcggcggacc aaggctcgat cattctacca gcgaagatta ttcgcgatgg
     2281 gattcgtttg acgcgtccgt ccgtcgataa agcaatggga gcagggaaga gtgaaagtcc
     2341 aaggcgggtg ccattgtggg tcggttcgtt tcgaagcgag cttgaaagag ccgccagtcg
     2401 aagcgcttga ttgcaactgc tccgtctgcc gaatgaccgg ctttcttcac cttgtcgtgc
     2461 cccatgacga
//
LOCUS       DASRBJ010000304         4789 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_499530,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000304 DASRBJ010000000
VERSION     DASRBJ010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4789
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499530"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..397)
                     /locus_tag="VE968_08375"
     CDS             complement(<1..397)
                     /locus_tag="VE968_08375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009822703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HZU51871.1"
                     /translation="MYHPELIRHPESCPALVLNADYTPLSYYPLSLWPWQTAIKAMFL
                     ERVDVVAHYEREVHSPSMALKLPSVIALREYVRPNEYPAFTRFNLFLRDRFRCVYCGS
                     SKELTFDHVVPRAQGGRTMWENVATACAPC"
     gene            588..1430
                     /gene="gluQRS"
                     /locus_tag="VE968_08380"
     CDS             588..1430
                     /gene="gluQRS"
                     /locus_tag="VE968_08380"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HZU51872.1"
                     /translation="MTRFAPSPSGRLHLGHAYSACLGHNWARQRTGQFRLRIDDLDQS
                     RCRPEFIDAIYQDLRWLGLEWNEPVIVQSQRTHRYEEALDELRSRGLVFACFCTRADI
                     AQSLTAPHGHAAVSYPGTCRALPDDPQRRATTPHCWRLNAAKALELAGLPTWVEADGQ
                     QFTAQQTEIGDAILARKDAPASYHLSCVIDDASSGVTMVVRGADLRASTPVQRLLQAV
                     LELPEPSYFHHPLITHDDGRRLAKRDRAPTLEGMREAGVDGPSLLNRLRRGELPAGFR
                     FGPV"
     gene            1441..1647
                     /locus_tag="VE968_08385"
     CDS             1441..1647
                     /locus_tag="VE968_08385"
                     /inference="COORDINATES: protein motif:HMM:NF016473.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIG1 domain-containing protein"
                     /protein_id="HZU51873.1"
                     /translation="MRILLLVLLLLAMAAVVYVLVRGVIAMASGKDMTGEQSQMWMRR
                     RVLFQAVAVILVILILVVASSAGH"
     gene            1650..2210
                     /locus_tag="VE968_08390"
     CDS             1650..2210
                     /locus_tag="VE968_08390"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HZU51874.1"
                     /translation="MVKLNRIYTRTGDMGSAGLVDGSRLSKSSLRMVAIGEVDEANAA
                     IGVALAAVGDDELSNMLLAVQNDLFDLGADVATPGESDGALRIVPSQVERLERQIDAM
                     NANLTPLTSFILPSGSAAVAGLHFARTVVRRAERAAVALNEVERLNPAMLAYLNRLSD
                     HLFVAARMLAAAAGGDVLWKPGNTRD"
     gene            2255..3490
                     /gene="egtB"
                     /locus_tag="VE968_08395"
     CDS             2255..3490
                     /gene="egtB"
                     /locus_tag="VE968_08395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ergothioneine biosynthesis protein EgtB"
                     /protein_id="HZU51875.1"
                     /translation="MATTARTEPREDLRSRLLATRQLTLELASPLSDADATVQPFADA
                     SPAKWHLAHTSWFFETFVLRDHVPGYTPFDERWAFLFNSYYDGEGPRHERPKRGMLSR
                     PSLEEVLDYRAHVESALERAWTCLSPAALGLVELGVNHEQQHQELLLTDILATFAANP
                     LEPVFGRLHEPACFAVEPMGWHAGREGVVEVGADGGQFAFDCEQPRHRVFLPRHKIAT
                     RRVTNSEWRAFIDDGGYKTSVLWLADGWAWVQQEDIAAPLYWHADGTEFTLAGRREID
                     PAASVSHVSFFEADAFARWAGARLPAEAEWEDFASSADPAVGNQLDSGGAVVPGAGGG
                     IFGDTWEWTHSAFSPYPGFAPAEGAVGEYNGKFMSGQIVLKGASCATPRGHSRASYRN
                     FFPPTARWQWSGVRLAQDA"
     gene            3474..4433
                     /gene="egtD"
                     /locus_tag="VE968_08400"
     CDS             3474..4433
                     /gene="egtD"
                     /locus_tag="VE968_08400"
                     /EC_number="2.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030745 - dimethylhistidine
                     N-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-histidine N(alpha)-methyltransferase"
                     /protein_id="HZU51876.1"
                     /translation="MLKTLDLQTDAFRDDVLAGLSAAVPAIPARWLYDRRGSELFDEI
                     TRLPAYYPTRTETAIFHSIMHEVAALIPKGAAVIEFGAGSQTKTPILLERVEPAAYVP
                     VDISGDYLEQNAAQLQHRFATIEVIPVTADFARPFTLPSAIDHLPKLGFFPGSTIGNF
                     VPWSATDLLRQFRSLLGPGSHLLIGMDRVKPVHRLIDAYDDPEGVTAQFTLNLLVRMN
                     RELDGNIPVDAFRHEARWNDILSRVEIHLVALRNVAFSVAHRSFFFPAGSSIHVENSH
                     KYGPRGGRVLLLAGGWTPVAEWSDGSGDFAVILAVAEPERFAP"
     gene            4458..4763
                     /locus_tag="VE968_08405"
     CDS             4458..4763
                     /locus_tag="VE968_08405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017183829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HZU51877.1"
                     /translation="MIFMLIGIVDVILQVLMYLIFAQVILSWLIAFNVINLHSGPVRS
                     VVVAIDRMTAPLYRPIRRMLPDFGGIDFSPLVVLLVIAVIRSKVLPGILMEVGPTIT"
BASE COUNT          890 a         1443 c         1450 g         1006 t
ORIGIN      
        1 tgcacggtgc gcacgcggtt gcgacatttt cccacatcgt cctccctcct tgggcacgcg
       61 gcaccacgtg gtcgaacgta agctccttgc ttgaaccgca atagacacag cgaaaacggt
      121 cgcggaggaa cagattgaag cgagtaaatg cggggtactc atttgggcga acatattccc
      181 gcagcgcgat cacgcttggg agcttgagcg ccatgctcgg gctgtgaact tctctttcgt
      241 aatgcgcgac cacgtccacg cgctcaagga acatcgcctt tatcgccgtc tgccatggcc
      301 agagtgacaa gggataatag gacaagggag tgtagtcggc attgagtacc aaagccggac
      361 aactctcggg atggcggatg agctcagggt gatacatgcg agagacagca gcctttcgtt
      421 cctaccgaac cgaactgcag ctctccgggc cccgtcgcac tcaaggagga gagggacatt
      481 cgatccatct tcccttgccc accggatgcc aacccggtgt gacgtgtgta tgacagcatt
      541 ttcggtgagt cagcgtcaag agtcctttga gcaacacctt cacggccgtg acgcgtttcg
      601 caccctcccc aagcgggcgg ttgcacttgg gccacgcgta cagcgcttgt ctcgggcaca
      661 actgggcgcg tcaacgaact ggacagttca ggcttcggat cgacgatctc gaccaaagcc
      721 gctgccgtcc cgagttcatt gacgccatct atcaggacct ccgctggctc ggtctcgagt
      781 ggaacgagcc ggtcatcgtc cagtcacaac gcacgcaccg atatgaggaa gcgctggacg
      841 aactgagatc gagaggattg gtgttcgcct gtttttgcac gcgggccgac atcgcccagt
      901 cgctaacagc tcctcacggg catgcggcgg tttcctatcc cgggacctgc cgggcgcttc
      961 ccgacgaccc ccaacgacgg gcaacgacgc cgcattgctg gcgcctcaac gcggccaagg
     1021 cgctggaact cgccggattg ccaacatggg tcgaggcgga tggccagcaa tttacggcgc
     1081 agcaaacgga aatcggtgat gctattctgg cacgcaagga cgcgcccgca tcctatcatc
     1141 tttcatgtgt tatcgacgat gcctcgagcg gggtaacgat ggtcgtgcgc ggcgctgacc
     1201 ttcgagcttc gacgcctgtc cagcgcctgc ttcaggctgt tcttgaattg cccgagccat
     1261 cctatttcca ccatccactc atcacccatg acgatggtcg caggctcgcc aagcgcgatc
     1321 gtgcgccaac gctcgagggc atgcgcgagg cgggggtcga tgggccatca ctcctcaacc
     1381 ggcttcgccg gggcgaacta ccggctggct ttcgtttcgg tccggtctaa ataggcgccg
     1441 atgcgaatcc tgctcctcgt cctgctcctg cttgccatgg cggccgtcgt ctacgttctg
     1501 gtgcgcggcg tgatcgcgat ggcgtcaggc aaggacatga ccggcgagca gtcgcagatg
     1561 tggatgcggc ggcgagttct tttccaggcc gttgccgtaa tcctcgtgat cctcatcctc
     1621 gtggtcgcga gctcggccgg tcattaacct tggtcaagct caaccggatc tacacgcgca
     1681 ccggcgacat ggggagcgcc ggactcgtcg atggaagcag attgagcaaa tcgagcttgc
     1741 gaatggtcgc catcggcgag gtagacgaag ccaatgctgc aatcggagtg gcgctcgctg
     1801 ccgtcgggga cgatgagctc agcaacatgc ttctggcagt ccagaatgac ttgttcgacc
     1861 ttggggccga tgttgcaacg cctggggaaa gcgacggtgc acttcgcatt gtcccgtctc
     1921 aggttgagcg gctcgagcgg caaatcgacg cgatgaacgc gaaccttacg ccgctcacca
     1981 gcttcattct gccgagcggt tccgcggctg ttgcaggact gcactttgca aggacggtcg
     2041 ttcgccgagc agaacgcgcg gcggtcgcgc tgaacgaggt tgagcggctg aacccggcca
     2101 tgctcgctta cctcaaccgg ctctctgatc atctgtttgt tgctgcccga atgcttgccg
     2161 cggcggcagg cggcgacgtg ctttggaagc ccggcaatac acgggactaa ggtcaggcga
     2221 ctttgcgccg ctaatgctgt agaggcgcaa gccgatggca accactgctc gcaccgagcc
     2281 tcgggaggat cttcgatcgc ggctgcttgc gacgcgtcaa ctgacgctcg aactcgccag
     2341 tccactgtct gacgccgacg ccacggttca gccattcgcg gacgcgtcac cagccaaatg
     2401 gcaccttgcc cataccagct ggttttttga aaccttcgtt ttgcgcgacc atgtgcccgg
     2461 ttacacaccg ttcgacgagc ggtgggcctt tctattcaac agttactatg acggtgaagg
     2521 acctcgtcat gagcggccca aacgcgggat gttgagccgt ccgtcgctgg aggaggtgct
     2581 tgactatcgg gcgcacgtcg aaagcgccct tgagcgagcg tggacttgcc tttcgccggc
     2641 cgcacttggt cttgttgagc tcggggtgaa tcacgagcag cagcatcagg agctgttact
     2701 cacggatatc ctcgctacct tcgctgccaa cccgttggag ccggtctttg gccgccttca
     2761 tgaaccggca tgttttgctg ttgagccaat gggatggcac gccgggcgag agggagtggt
     2821 tgaggtcgga gcggacggag ggcagttcgc ctttgactgc gagcaaccgc gccaccgagt
     2881 tttccttcct cggcacaaga tcgccacgcg ccgagtgacg aacagcgaat ggcgcgcctt
     2941 catcgatgac ggggggtaca agacgtcggt tctatggctc gccgacggtt gggcatgggt
     3001 acagcaggag gatatcgccg ctccccttta ctggcatgcg gacggcaccg agttcacgct
     3061 cgcgggaaga cgagagatcg atcctgcggc ttcagtatcg cacgtgagct tcttcgaggc
     3121 ggatgcgttc gcgaggtggg ccggtgcgcg acttcctgcc gaagcggaat gggaagactt
     3181 cgcctcgtcg gccgaccccg cagtcggtaa ccagctggac agcggcggcg cggttgtccc
     3241 gggcgcaggc ggaggaatct tcggagatac gtgggaatgg acgcacagcg cgttttcgcc
     3301 atatcccggc tttgcgcctg ccgaaggggc agtcggcgaa tataatggca agttcatgag
     3361 cgggcagatc gttcttaaag gcgcgagttg cgcaactccg cgcggccata gccgcgcctc
     3421 gtatcgaaat ttcttcccgc caacggcgcg ttggcaatgg tcaggcgttc gtcttgctca
     3481 agacgcttga tcttcagaca gacgcgtttc gcgatgacgt tcttgctggt ctttcggcgg
     3541 ccgttccggc aattccggcc cgctggctct atgaccggcg gggttcggaa ctttttgacg
     3601 aaatcacgcg gctgcccgct tattatccga cgcgaacaga aaccgcgatc ttccactcca
     3661 taatgcacga ggtcgccgcg ctgattccga agggtgccgc ggtgatcgag tttggcgccg
     3721 gctcgcaaac caagacgccg atcctgctcg agagggttga gcccgccgcc tatgttcccg
     3781 tggacatatc gggcgactat ctcgagcaaa atgccgccca gttgcagcat cgtttcgcga
     3841 caatcgaagt catcccggtg accgcggact tcgcgcggcc attcacattg ccttcggcca
     3901 tcgaccattt gcccaagctt ggcttctttc ccggctcaac catcggaaac ttcgttccgt
     3961 ggagcgcaac cgacctgttg cgccagttcc gcagcttgct tggacccggt tcgcaccttc
     4021 tgatcggcat ggatcgcgta aagccggtgc accggctgat cgatgcctat gatgatccgg
     4081 agggcgtcac tgcccagttc accttgaacc ttcttgtaag gatgaatcgt gagctcgacg
     4141 gaaacattcc agtcgatgca tttcggcatg aagcgcgctg gaacgacatc ctgtcgagag
     4201 tggaaattca tcttgtagcc ttgcgcaacg tggcatttag cgtcgcgcac cgcagcttct
     4261 tctttcctgc aggctcgtcg atccacgtcg agaatagcca caaatatgga ccccgtggcg
     4321 gacgcgtgct gctgctcgcc ggcggctgga caccagttgc cgaatggtct gatggttcag
     4381 gtgatttcgc cgtgatcctt gccgttgctg agccggagag gtttgcgccc tagaagccgg
     4441 gcggctaagc ggctgcgatg atcttcatgc tcatcggcat cgtggacgta atcctgcaag
     4501 tcctgatgta cctaattttc gcgcaggtga tcctcagctg gttgatcgcc ttcaacgtga
     4561 tcaatctgca ctctgggcca gtgcggagcg tcgtcgtcgc gatcgatcgc atgaccgcac
     4621 ctctctatcg ccccattcgg cggatgctcc ctgactttgg cggcatcgac ttttcgccgc
     4681 ttgtcgtgct gctcgtcatt gcggtgatca ggtcgaaagt gcttcctggg atcctcatgg
     4741 aagtgggccc aaccatcaca tgacagctcg cctgatcgac ggaagggca
//
LOCUS       DASRBJ010000305         3198 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_98083,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000305 DASRBJ010000000
VERSION     DASRBJ010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3198)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3198)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3198
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98083"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..450)
                     /locus_tag="VE968_08410"
     CDS             complement(<1..450)
                     /locus_tag="VE968_08410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51878.1"
                     /translation="MRKLPAFLLAGLSAAALAGTATAASRNGHFLNIALPDGSTAHIE
                     YAGDVAPKVTIEPSKAVAFGDWVPFPAFASLDRMMEQIDRETQAMLREAPVNGVAPIG
                     TPGAYVASFGNSPANVTSTTIVSYSNGKSTCTRETQTISQGPGKPPKV"
     gene            1012..1491
                     /gene="rplM"
                     /locus_tag="VE968_08415"
     CDS             1012..1491
                     /gene="rplM"
                     /locus_tag="VE968_08415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014078166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HZU51879.1"
                     /translation="MKALMKTTKSAKPAEVEKKWHLIDADGLVVGRVATIIANILRGK
                     HKPSFTPHVDCGDHVVVVNADKVRFTGRKLDQKVYYRHTGFAGGIKGVTAGKVLEGRF
                     PERILEKAVERMIPRGPLGRDQMRALHIYSGTEHPHAGQNPQTLDVASMNRKNKVGA"
     gene            1491..2024
                     /gene="rpsI"
                     /locus_tag="VE968_08420"
     CDS             1491..2024
                     /gene="rpsI"
                     /locus_tag="VE968_08420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HZU51880.1"
                     /translation="MSDTRESIADQLGAAPTAAPGQPDATRIETPAPRPPVEAAPVRE
                     QQLDKYGRAYATGRRKDAVARVWLKPGSGKIVINGREQETYFARPTLRLVINQPFDVS
                     GRQGQYDVVATVVGGGLSGQAGAVKHGIAQALTRYEPGLRTIVKQAGFLTRDPRVVER
                     KKYGRAKARRSFQFSKR"
     gene            2102..>3198
                     /locus_tag="VE968_08425"
     CDS             2102..>3198
                     /locus_tag="VE968_08425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011446157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HZU51881.1"
                     /translation="MRKFIPLIAAVLLGTPALGDTVLLRPARVFDGVDPQPHDGWSVL
                     VEGDRIAAVGPHLTAPQGAKVVDLPGETLGPGLIEGHSHLFLHPYNETKWDDQVLHEP
                     LALRTARAVVHARRTLDAGFTTERDLGTEGAGYADVGLKQAINQGIIPGPRLLVATKA
                     NVARGAYGPKGFEPGVAIPQGAEEISGADEMTRAARDQIAAGADVIKMYADYHYLPGE
                     PSRPTMTEAEMAAGVSVAHDAGRLAAAHATTAEGMRRAALAGVDTIEHGYGGTPEVFK
                     MMHDRGIALCPTLGASEAYARYFQAWNGREPAPESVQENRRSFQMAVHAGVKICMGGD
                     VGVFPHGQNWLEMEAMEHAGMPAAQVMIAATS"
BASE COUNT          678 a          951 c          961 g          608 t
ORIGIN      
        1 cacctttggc ggcttgcccg gtccttgcga aatagtctgt gtttcccgcg tgcaagtgga
       61 cttgccgttg ctgtaggaaa cgatcgtcgt gctggtgacg ttggcaggcg aattgccaaa
      121 tgaggcgaca taagcgcccg gagtgccgat cggggcaacg ccattcaccg gcgcctctcg
      181 cagcatcgcc tgcgtttccc gatcgatctg ttccatcatg cggtcaaggc tggcgaatgc
      241 cggaaagggc acccaatcac caaaagcgac agccttcgac ggctcaatcg tcacctttgg
      301 agcaacgtca ccggcatatt caatatgagc ggtcgagcca tccgggagcg caatgttcaa
      361 gaaatgacca tttcggcttg cggcagtcgc ggttccagca agcgctgcgg cactaagacc
      421 tgcgagtaga aatgcaggaa gcttcctcac gaaaacatcc tccagaagtt actgttgatc
      481 caactcctgg aaaattatcg cgcgattctg aaccgcagat tgccgtaagg ctgttcttga
      541 ttttggtcag tttcaaagcc gcggaaacct ccgccaacga agcgccttca gaacgtgcga
      601 atggtggcgg atcgagactt tggcgctcct tcgtgccgcg aagtttccaa gaaaaatgcc
      661 gcggaccgat tgctcgaaac gcggcacttt cattacttgc tactcttcag ccgttcccgt
      721 gaacggcccg ccttaaatga ccccgagaag ccacaaaatc aggatcagga tcagcaaacc
      781 gccaagaccg atgtacatgg cattcctcct gttatggtgt tgctgttgaa acggcgagga
      841 ggacctcctc gttccacttg ttacgggtag ggaacggctg cttgtggtat tattttaccc
      901 gtcaaaaaac gtccggattt gcttgacttt ttcggcagca gcaagcaaat agcgagcgcg
      961 acagcggcgc cccggcggtg ccgcttttct atttaggaag aggttcaggc catgaaggcg
     1021 ctgatgaaaa cgacgaagtc ggccaaaccg gccgaggtcg agaagaagtg gcacctgatc
     1081 gatgccgacg ggctggtcgt tggccgggtt gcaacgatca ttgcgaatat cctgcgcggc
     1141 aagcataagc cgagcttcac gccgcacgtc gattgcggcg accatgtcgt cgtcgtcaat
     1201 gccgacaagg tgaggttcac aggtcgaaag ctcgaccaga aggtatatta cagacacacg
     1261 ggcttcgcgg gcggcatcaa gggagtgacc gcaggcaagg tgctcgaagg ccggtttcct
     1321 gagcggatcc ttgagaaagc ggtcgagcgc atgattccgc gcggcccact cggacgcgac
     1381 cagatgcgcg cgctgcacat ttattccgga accgagcatc cccacgccgg gcaaaatcct
     1441 caaacactcg acgtcgcgtc gatgaaccgc aagaacaagg tgggcgccta atgtccgaca
     1501 ctcgtgaatc gatcgccgat cagctcggag cagctccaac tgcggcgccg ggacagcccg
     1561 atgccactcg catcgaaact ccggcaccgc ggccgcccgt agaggcagca cccgttcgtg
     1621 agcagcagct cgacaaatat ggccgcgctt atgcgacggg tcgacgcaag gacgcggttg
     1681 cgcgcgtgtg gctgaagccg ggctcgggca agatcgtgat caatggtcgc gagcaggaga
     1741 cctatttcgc gcgcccgacc cttcgtcttg tcatcaatca gccattcgac gtctccggac
     1801 gccaagggca atatgacgtg gttgcaacgg tcgtcggcgg tggcctttca ggacaagccg
     1861 gtgccgtaaa gcatggcatt gctcaagctc taacgcgtta tgaaccggga ctgcgcacca
     1921 tcgtaaagca agcagggttc ctcacgcgcg atccacgcgt cgtcgagcgc aaaaagtacg
     1981 gtcgcgcgaa ggcccgccga agcttccagt tctcgaagcg gtaatcgcaa tttcagcaat
     2041 tcgtcgcgac gggggcgctt cggtctttcc gaggcgcccc tttcgattct acgctgtagc
     2101 catgcgtaag ttcatcccgc tcattgccgc agtcctcctc ggaacgcccg ccttgggaga
     2161 cactgtcctc cttcgcccag cccgggtgtt cgacggtgtt gatccccagc cccacgatgg
     2221 ctggtcggtg ctcgttgaag gcgaccgaat tgccgccgtt ggaccccatc tcaccgctcc
     2281 tcaaggtgca aaggtcgtcg accttccggg agagacgcta ggccctggac tgatcgaggg
     2341 ccattcgcac ttgttcttgc acccgtacaa cgagacgaag tgggatgatc aggttctcca
     2401 tgagcctctt gcactgcgca ccgcacgcgc cgtagtgcac gcgcggcgaa cgctcgacgc
     2461 gggctttacc accgagcggg acctcggcac cgagggagcg ggctacgcgg acgttggcct
     2521 aaagcaggcg atcaaccagg gcatcatccc tgggccgcgc cttctggttg cgacaaaggc
     2581 gaatgttgcg cgcggcgctt acggccccaa gggatttgag cccggcgtgg caattcctca
     2641 gggcgccgag gagatcagtg gggccgacga aatgacgagg gctgcgcgcg accagatcgc
     2701 cgcgggcgcc gacgtcatca agatgtacgc cgactatcat tatctccccg gcgaaccttc
     2761 acggccgaca atgacggaag ctgaaatggc agccggcgtc agtgttgcgc acgatgcggg
     2821 acggcttgcc gcggcgcacg cgacgactgc tgaaggaatg cgaagggcgg cactcgcggg
     2881 cgtcgacacg atcgagcacg gctacggtgg tactcccgaa gtcttcaaaa tgatgcacga
     2941 ccgcggcatc gctctctgtc caacgctcgg tgcttcagaa gcctatgcgc gttatttcca
     3001 ggcttggaac ggacgcgaac cggcgccgga aagcgttcag gaaaatcgcc gctcgttcca
     3061 aatggccgtt cacgcagggg tcaagatttg catgggtggc gacgttggcg ttttcccgca
     3121 tgggcagaac tggcttgaaa tggaagcgat ggagcatgca ggtatgcccg cggcgcaagt
     3181 catgatcgcc gcaacctc
//
LOCUS       DASRBJ010000306         4518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_749671,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000306 DASRBJ010000000
VERSION     DASRBJ010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4518
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_749671"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..270
                     /locus_tag="VE968_08430"
     CDS             <1..270
                     /locus_tag="VE968_08430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HZU51882.1"
                     /translation="DCQFMTEHLASLGAVSVPRETYVALLSAALGRGAAVGLPAAGAL
                     VEALGRTPDAPADFSALDRLLELAGAAGAGGPAGYVIAQLLGQTS"
     gene            complement(306..539)
                     /locus_tag="VE968_08435"
                     /pseudo
     CDS             complement(306..539)
                     /locus_tag="VE968_08435"
                     /inference="COORDINATES: protein motif:HMM:NF021444.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2155 domain-containing protein"
     gene            complement(680..1063)
                     /locus_tag="VE968_08440"
     CDS             complement(680..1063)
                     /locus_tag="VE968_08440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007688672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0010257 - NADH dehydrogenase complex
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone oxidoreductase subunit NDUFA12"
                     /protein_id="HZU51883.1"
                     /translation="MGFWSRTFTWWNGATWGTALFTRRFGNEVGRDEAGNVYYQDKKH
                     PDRRWVIYNGSNDASRVGPGWQLWLRGTIDDVPEKALPPVRKFQKTPTPNLTGTMEAF
                     RPDGALGSGKLRPASTGDYEPWIPE"
     gene            complement(1101..1460)
                     /locus_tag="VE968_08445"
     CDS             complement(1101..1460)
                     /locus_tag="VE968_08445"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HZU51884.1"
                     /translation="MPLTIHSKTGAHHFTVEIAATPEQQERGLMFRKSIAPDRGMIFP
                     YQPPQEVAFWMKNTLIPLDIVYIRADGTVGRIVNAEPMDITPLPSGEPVALVLEIGGG
                     RAAQLGIKEGDKVSWPH"
     gene            complement(1646..2242)
                     /locus_tag="VE968_08450"
     CDS             complement(1646..2242)
                     /locus_tag="VE968_08450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein"
                     /protein_id="HZU51885.1"
                     /translation="MVRSSVLLADGGNDHTMESDDHSGAPEMEPITGRVKWFDATRGF
                     GFLVSDQVDGDVLLHFSVLREHGRRSVPEGALIECVPVRLERGLQAKKVLSIDTSLAL
                     PQQPRSSMPSGERADRKALAENAGAFEPVEVKWFNRVRGYGFVKRPDSSGGEDVFVHM
                     ETVRVSHLPELQPGQLLEARIAPSSKGLTAVELRAPDA"
     gene            complement(2314..2871)
                     /locus_tag="VE968_08455"
     CDS             complement(2314..2871)
                     /locus_tag="VE968_08455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007712889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RecX family transcriptional regulator"
                     /protein_id="HZU51886.1"
                     /translation="MTLTNIRRKGRQLNDSSLAELALAYVGKYATSRAKLRAYLSRKI
                     RERGWDGSKTPDLDALANRLSELGYVDDAAYALGKARSLAARGFGKRRLADKLRVDGI
                     DESDRAAADAHADDQSLDAALRFAERRRLGPFASVPADQQQRQKWIAAMVRAGHDMAI
                     ARAIATLPPEPDADAKALKERLYVR"
     gene            2958..>4518
                     /locus_tag="VE968_08460"
     CDS             2958..>4518
                     /locus_tag="VE968_08460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acyl-AMP ligase"
                     /protein_id="HZU51887.1"
                     /translation="MNCVLERNTSVTKELAPAGATPTLDSLPRRLADFGTIGEALDYA
                     ARGRRGLNFHDARGTLTRAYAFSELRVDAMAVARRFVRLGIKPGERIALIAETGPEFA
                     ATFFGAVYAGAWPVPLPLPTSFGGREAYVDQLGVQLGSCDPAMFLYPPELAQFGKEAA
                     EKAGVPSRTWDSLTDVEQASGELPAAKPDDIAYLQYSSGSTRFPHGVAVTHHALLDNL
                     RAHGIGLQVVETDRCVSWLPWYHDMGLVGCFLSPMSLQMSVDYLKTEDFARRPLAWLD
                     MITRNPGTTVSYSPTFGYDICSRRMSSQTRAEDRFDLSRWRIAGNGADMIRPDVMQAF
                     VDCFDAAGFKASAFCPSYGLAEATLAVSLMPPGEGIRLELVEETELSGGAPDTKRPRR
                     YRAVVNCGKPVTGMQIEIRDSDGSILPERGIGKVYVRGASVMHSYFRDSESTSACLSA
                     DGWLDTGDMGYISSGYIFIVGRAKDMIIINGRNHWPQDIEWAVEQLPGFKSGDIAAFA
                     ITGPSGEETPAV"
BASE COUNT          799 a         1385 c         1411 g          923 t
ORIGIN      
        1 gactgccagt tcatgaccga gcacctcgcg tcgctcggag ccgtcagcgt ccctcgcgag
       61 acctatgttg cattattgtc ggcggcgctt ggccgaggcg ctgctgttgg gcttcccgcc
      121 gctggcgcgc tcgtggaagc acttggccgg actccggacg ctcctgcaga cttttcggcg
      181 ctcgaccggt tgctcgagct tgccggtgcc gccggcgcgg gcggcccggc gggatatgtc
      241 atcgcgcagc tcttgggcca aacgtcgtag accgggtgct caacgacgtt gagtgacggc
      301 gattccttgt acagccatcc cgagaatatg cgtgaccagg tccggtcggg ttgctcaacg
      361 tcgacttgga caaaggctcc ggtgagtttc tcatcttccc acggcgcagt tgtctcgcag
      421 gcgcgcaggc gcacgatcac gtccttccag cgaatggatt ggccgggatg gagcgtcacg
      481 ttctggacaa tgccattgcg cttgttgaga attccaagaa cggcggtgcg ctgaggcatt
      541 ggcgtaacgc cgccctgccc gttcgccgtc gaaccaacct gccgggccac cggaagtggc
      601 gcattctgct caggcgcgcc tttgccgcag gaggcgagcg caagcgcgat caaaagggat
      661 gccggcggcg ccttcacgct tattctggga tccacggctc ataatcgccg gtcgaagcgg
      721 gccgaagctt gcctgagccg agcgcaccat ccggtctgaa cgcctccatg gtgccagtga
      781 ggttcggagt cggggtcttc tggaacttgc ggaccggggg aagcgccttt tcgggcacgt
      841 cgtcgatcgt gccccttagc catagctgcc agccaggacc aacacggctc gcgtcattgg
      901 acccgttata gatcacccag cgccggtccg gatgcttctt gtcctgataa tagacgttgc
      961 ccgcttcgtc gcgtccgact tcattgccga atcggcgcgt gaatagcgcc gttccccacg
     1021 tcgcgccgtt ccaccaggtg aatgttctcg accagaaacc catgagtgcg ccttagccgc
     1081 ctcgctccgg acgaggcaag ctagtgcggc cagctcacct tgtcgccctc cttgattccg
     1141 agctgcgcgg cgcgtccgcc gccgatctcg aggacgaggg cgacgggctc acccgacgga
     1201 agtggcgtaa tgtccatggg ttcggcattg acgatgcgac caacggtacc atcggcgcgg
     1261 atatagacga tatcgagcgg aatgagcgta ttcttcatcc agaacgcaac ttcctgcggc
     1321 ggctggtaag ggaatatcat gccgcggtcg ggcgcaattg acttgcggaa catgaggccg
     1381 cgctcctgct gctccggagt cgcggcaatc tcgaccgtga aatggtgggc accggtcttc
     1441 gagtgaatgg tcaatggcac ttcgcgaagt cctgtctgcg gctgcgcatc gattcgctcg
     1501 gacggcggat cttccgttgg cgatgtctga ggctgctcag cgcgtggagc ggtgctttgg
     1561 gtggccggat cctggactgc ggctgtttcg gcgggggcct gccggttgca ggcgataagc
     1621 gcgatgacgc ccgctgctcc taaggctatg cgtcgggtgc gcgcagttcg accgccgtta
     1681 gtcctttgct gcttggtgca atccgcgcct cgagcagctg ccctggctga agttcgggca
     1741 aatgcgacac ccgcaccgtc tccatgtgga cgaacacgtc ctcgccgccc gatgaatcgg
     1801 gccgcttgac gaaaccatag ccgcgaacgc ggttgaacca tttgacctcc accggctcga
     1861 acgctccggc attttccgca agtgccttgc gatccgcgcg ttcgccggac ggcatggacg
     1921 agcgcggttg ctgcggcaag gccaatgatg tgtcgatcga aagcactttc tttgcctgga
     1981 ggccgcgttc gaggcggact ggaacacact cgatgagtgc gccctcgggt acgctccgcc
     2041 gtccgtgctc gcgcagcacg ctgaagtgca ggagtacgtc accgtcaact tgatcgctga
     2101 cgagaaaacc gaatccgcgc gtcgcgtcga accacttcac tcggccagtg atgggctcca
     2161 tctcgggcgc gcccgagtga tcgtccgact ccatcgtgtg gtcattgccc ccgtcggcaa
     2221 gaagaactga gctacgcacc atcgaagcac tattaacatg tgtgtctttg tcggcaaacc
     2281 gactttacgg cgaatctctt aatccatgtt aggttagcgc acatataagc gctccttgag
     2341 cgctttcgca tccgcatcgg gctcgggagg aagagtggca atcgctcgag cgatggccat
     2401 gtcgtggccg gcgcgcacca ttgcggcgat ccatttctgg cgctgctgtt gatcagccgg
     2461 aacggaagcg aacggaccaa gtcgccgccg ctcggcaaag cgcaaggccg cgtcgagtga
     2521 ctggtcgtcg gcgtgcgcat ccgcggcggc gcggtcgctt tcgtctattc cgtcgacgcg
     2581 aagcttgtcg gccaatcgcc tcttcccaaa gccgcgcgcc gcgagcgaac gtgctttgcc
     2641 cagggcgtag gcggcatcgt cgacatagcc gagttcggaa aggcggttcg caagcgcgtc
     2701 gagatcgggt gtcttgctac cgtcccaacc gcgttcgcgg atcttcctcg acaagtaagc
     2761 gcgaagcttc gctcggctgg ttgcatattt cccgacatag gcaagcgcga gttctgccag
     2821 actgctgtcg ttcagctgtc tacccttacg tcgaatgttg gtgagtgtca tgacgccgtt
     2881 tttgtgccac agtgcctcgc caatggggaa gcggctgccg caagtcgtgc agtcaaaggg
     2941 atggaaacag gcagggaatg aactgcgtgc tcgagcgcaa tacgtcggta accaaggagc
     3001 tcgcgcccgc aggcgcaaca ccaacgctcg acagtcttcc tcgccgtctt gccgacttcg
     3061 gcacgattgg tgaagcgctc gactatgccg cgcgtggtcg gcgaggtctg aacttccacg
     3121 atgctcgtgg cacgctgacg cgtgcctacg ctttttccga actgcgcgtg gatgcaatgg
     3181 cggtcgcccg ccgattcgtc aggcttggga tcaagcccgg cgaacgaatt gctctcattg
     3241 ccgagaccgg acctgaattt gccgcgacgt tcttcggcgc ggtctatgct ggtgcgtggc
     3301 cagttccgct tccgctgcca acgagctttg gtggacggga agcttatgtc gaccagcttg
     3361 gcgtgcaact gggaagctgt gaccccgcaa tgttcctcta tccgcctgag ctcgcgcaat
     3421 tcgggaagga ggccgcggaa aaagctggcg tgccatcgcg cacttgggat tcactgacgg
     3481 atgtcgaaca ggcgagcggc gagcttccag cggcgaaacc ggacgacatt gcctatcttc
     3541 aatattcgag cgggtcgacg cgcttcccgc acggcgtcgc ggtaacgcac cacgcgctcc
     3601 tcgataatct tcgcgcgcac gggatcggct tgcaggtggt cgagaccgac cgctgtgttt
     3661 catggcttcc ctggtaccac gacatgggtc tcgtcggctg tttcctgtcg cccatgtcgc
     3721 tgcagatgtc cgtcgactat ctcaagaccg aggattttgc gcgaaggccg ctcgcatggc
     3781 tcgacatgat cacgcgcaat cccggaacaa cggtcagcta ctcgccgacg ttcgggtacg
     3841 acatctgctc acgccgaatg agttcgcaaa cgagagcgga ggaccgcttc gatctctcac
     3901 ggtggcgcat tgcgggcaat ggcgctgaca tgatccggcc ggacgtcatg caggcgttcg
     3961 tcgattgttt tgatgctgca gggttcaagg cgagtgcctt ctgcccaagc tatggtcttg
     4021 ccgaagcaac gcttgccgtg tccctgatgc cgccgggcga aggaatccgc ctcgagcttg
     4081 ttgaggaaac cgagctgtct ggcggcgccc ccgataccaa gcggccgcga cgctatcgcg
     4141 ccgtcgtcaa ttgcggaaag cccgtcactg gaatgcagat cgaaatccgc gattccgacg
     4201 gttcaattct tcccgagcgg ggaataggca aggtctatgt gcgcggcgct tcggtgatgc
     4261 acagctattt ccgggattcg gaatcaacca gcgcctgcct gtcggcggac ggttggcttg
     4321 atacgggcga catgggctac atttcctcag gctacatttt cattgtcggc cgcgccaagg
     4381 acatgatcat tatcaacggg cgcaaccact ggccgcagga catcgaatgg gccgttgagc
     4441 aattgcccgg cttcaagtct ggcgacatcg ccgcttttgc aatcaccggt ccaagcggtg
     4501 aagaaacgcc ggcagtgc
//
LOCUS       DASRBJ010000307         4244 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_605574,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000307 DASRBJ010000000
VERSION     DASRBJ010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4244
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_605574"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..977
                     /locus_tag="VE968_08465"
     CDS             <1..977
                     /locus_tag="VE968_08465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008600888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HZU51888.1"
                     /translation="DFPDDAELIVGDVRNKDVVARSLKGVDSVVHLAAEVGVGQSMYA
                     VERYTSVNETGSAVLFEALIDHPVRRVVTASSMSIYGEGLYRDEDGNLVQDAQRKPRL
                     AESQSWDPLDARGRPLVPVATPEWKQPSLASIYALGKYVQERQTLIMTEAYAMEGVCL
                     RLFNVYGPGQALSNPYTGVLAIFSSRLANGQRPVIFEDGEQRRDFVYVGDVARAFCEA
                     LVHPRAAGQVFNIGSGQDRSVKQVAQSIARAMNREQIEPEIFGKSRVGDIRHCFCDGT
                     KAADTLGFVAEKDFEEGLAELAGWVAEQEAHDRVDQARAELEAKGLVA"
     gene            974..2035
                     /locus_tag="VE968_08470"
     CDS             974..2035
                     /locus_tag="VE968_08470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HZU51889.1"
                     /translation="MNLSRPILITGGAGFIGSNLADRLAGDGHEIIVYDALARAGVER
                     NLAWLRERHGSRITHVLGDVRDEDELARAAADAAAVFHFAAQVAVTTSLVDPREDFDI
                     NVRGTINLLDAIRVRSERVPVIFASTNKVYGDLADIEFETLHDRYEPKAFAERRGISE
                     SRPLDFHTPYGCSKGAADQYVLDYARSFGIPTAVFRMSCIYGQRQMGTEDQGWVAHFL
                     IRALENKPITIYGDGRQVRDILNVSDAVNAYVAALKNIERVQGCAFNLGGGPENAVSL
                     LELIDEMRMITARRIELTFEDWRPGDQRWFVADTSAARATLELPPASGWRTGVKKLAE
                     WLASERQIELHAQLASAAE"
     gene            2032..3126
                     /locus_tag="VE968_08475"
     CDS             2032..3126
                     /locus_tag="VE968_08475"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HZU51890.1"
                     /translation="MSALRLLLVTDAVGGVWVYSIELARALLALGVETVLAVAGPPPD
                     RKQRDEANGFKLIETSLPLEWLANDSSALARAGVELARLADEQGVDVVQTSSAALLAS
                     TEIAQPCVALQHSCVASWWEAVKGTTLPADFEWRRTLVQRGLQRASAIVAPSIAFAAD
                     TTRIYGTPAIAVHNGRTPLSSRAIPQGGFVFTAGRLWDEGKNVATLDAAAGMVDTPFQ
                     AAGPLEGPNGTKASVRHMEPLGMLSEARLAGLYAARPIYASAALYEPFGLSVLEAAQA
                     GCALVLSDIATHREMWGGAAVFVPATNPEAFASAIGDIMADADEREQLGRLAAARATH
                     YTPTRMARGMAEIYARVIGSSAPVELAGAA"
     gene            3123..4244
                     /locus_tag="VE968_08480"
     CDS             3123..4244
                     /locus_tag="VE968_08480"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HZU51891.1"
                     /translation="MRIVYFTHSLRSCWNHGNAHFLRGVLRELIALGHDVRVLEPENA
                     WSVTNLVKDHGEEALQAFSNAYPELSSRTYSRPEEGAAQAWGADLVIVHEWNDPELVS
                     AIGRLRARGGGFTLLFHDTHHRAVSAPEEMRAYDLGSYDGVLAFGSTLARVYERWGWG
                     NRVYVWHEAADTRRFHPPVRPLTRNGIVWVGNWGDGERSEEIVEFLLRPARDAGLALD
                     IYGVRYPDEAQAKLAAFGAHYHGWIANADAPKLFGTRLATVHVPRRFYTNLLPGIPTI
                     RVFEALACGIPLVSAPWDDCEHLFRVDQDFLMVRSSAEMTQALRDLKNDPELRSALSR
                     YGLETISKRHTCAHRARELLSIVERLRAPVARRVLESAA"
BASE COUNT          786 a         1261 c         1318 g          879 t
ORIGIN      
        1 aggatttccc cgacgacgcg gaattaattg tcggtgatgt tcgcaacaag gatgtcgtcg
       61 ctcgttcgct taaaggtgtc gacagtgtcg ttcacctcgc tgcggaggtc ggtgttggcc
      121 agtcgatgta cgcggtggaa cgctatacct ccgtcaacga gacagggtct gccgtccttt
      181 ttgaagcact gatcgatcat ccggtgcgcc gcgtcgtcac tgcctcctcg atgagcatct
      241 acggggaggg gctttatcgt gatgaggacg gtaatctagt ccaggacgcg cagcgcaagc
      301 cccgactggc ggaaagccag agctgggatc cgctcgatgc gcgagggcgc ccgctcgttc
      361 ccgtcgcgac tcccgagtgg aagcagccga gcctcgcctc gatctacgcg cttggtaaat
      421 atgtgcagga gcgccagacg ctcatcatga ccgaggccta cgccatggag ggcgtgtgcc
      481 tgcgtctgtt caatgtctac ggaccgggcc aggctctctc gaacccctac accggcgttc
      541 tcgcgatctt ctcgtcgcgc ctcgcgaacg gtcagcgccc agtcattttc gaggacggcg
      601 agcaacggcg cgacttcgtc tacgtgggcg acgtcgcgcg tgccttttgc gaggcgcttg
      661 ttcatccgcg cgcagcgggc caagtgttca atatcggttc gggccaggac cgcagcgtca
      721 agcaagtcgc gcaatcgatc gcccgcgcaa tgaaccgcga gcagatcgaa cccgaaatct
      781 tcggcaagtc gcgagtaggc gacattcgcc attgcttctg tgacggcaca aaggccgcgg
      841 acacgcttgg atttgtagcc gagaaagact tcgaagaagg ccttgctgaa cttgctggtt
      901 gggtggcgga gcaagaagcc catgatcgcg tcgaccaagc gcgcgccgag cttgaagcaa
      961 agggactggt cgcatgaatc ttagccgtcc catcctgata accgggggcg ccgggttcat
     1021 tgggtcgaac cttgccgatc gacttgcggg ggatggccac gagattattg tgtatgacgc
     1081 tctcgcgcgt gccggtgtgg agcgcaatct tgcatggctg agagaacggc acggcagccg
     1141 aatcacgcat gtcctcgggg acgttcgtga cgaggatgag ctcgcgcgcg cggccgcgga
     1201 cgcggcggcc gttttccatt ttgccgcaca ggtcgctgtg accaccagcc tcgtcgatcc
     1261 gcgcgaggat ttcgacatca acgttcgtgg aacgatcaac ctgctcgacg caatccgggt
     1321 tcgttcggaa cgcgtgcccg tcatctttgc ctcgacgaac aaggtttatg gggatcttgc
     1381 cgacatcgag ttcgaaactc tccacgaccg gtatgaaccc aaggcttttg ccgaacggcg
     1441 cggtatttcc gaatcgcgtc cgctcgattt tcacactccc tatgggtgct cgaaaggcgc
     1501 tgccgatcaa tatgtcctcg attatgcacg gagcttcggg attccgacgg ccgtattccg
     1561 aatgagctgc atctacggac agcggcagat ggggacggaa gatcagggct gggttgcgca
     1621 ttttctcatt cgtgccctcg agaacaagcc gattacgatc tatggtgatg gacggcaggt
     1681 ccgtgacatt ctcaacgtca gcgatgccgt taacgcgtac gttgccgcgc tcaagaatat
     1741 cgaacgtgtc caaggatgcg ccttcaacct cggcggcggg cccgaaaatg cggtgagctt
     1801 gctcgaactc atcgacgaga tgcgcatgat taccgcacgg cggatcgagc tcacgtttga
     1861 agattggcgg ccgggcgatc aacgctggtt cgttgcggac acgtcggctg ctcgagcgac
     1921 gctcgagctt ccgcccgctt ctggctggcg gacgggcgtc aagaagcttg ccgaatggct
     1981 tgcgagcgag cggcaaatcg agcttcatgc ccagcttgcg agcgcagcgg aatgagtgcg
     2041 ctgcgtctcc tcctggttac ggatgcagtt ggaggggtct gggtttacag catcgagctt
     2101 gcgcgcgcgc tgctggctct tggcgttgag accgtgcttg cagtggctgg ccctccgcct
     2161 gatcgcaagc aacgcgacga ggcgaatggg ttcaagctta tcgaaactag cttgccgctc
     2221 gaatggctcg cgaatgattc gtcggcgctt gctcgtgccg gtgtggaact tgcgcgcctt
     2281 gccgatgagc aaggcgttga cgtcgttcag acaagcagcg ctgctcttct tgcaagtaca
     2341 gaaattgccc aaccctgcgt cgcgcttcaa cacagctgcg ttgcgagttg gtgggaagcg
     2401 gtcaaaggaa ccactctccc cgctgacttc gaatggcggc gcaccctcgt tcaaaggggt
     2461 cttcaacgag cttcagcgat tgtcgcgccg agcattgcct ttgcggccga cacgacacga
     2521 atctacggga cgcccgcaat tgccgttcac aacgggcgca cccctctttc ctcccgcgcc
     2581 attccgcagg gcggcttcgt cttcactgcc gggagactct gggacgaggg aaaaaacgtg
     2641 gccacgttgg acgccgccgc gggcatggtc gacactccct ttcaggcggc gggtccgctg
     2701 gaagggccaa acggcaccaa ggccagcgtt cgtcacatgg aaccacttgg catgctcagc
     2761 gaggcgcgcc ttgcaggcct ctatgcggca cgtcccatct atgcgtcagc tgcgctttac
     2821 gagcctttcg gtctctccgt tctggaagcc gcgcaggcgg gctgtgcact cgtactttcc
     2881 gatattgcca cccaccggga aatgtggggc ggagcagcag tcttcgttcc tgcgaccaat
     2941 ccggaggcgt tcgcgtcggc aattggtgac ataatggctg atgcggacga gcgcgagcag
     3001 cttgggcgcc tcgctgctgc acgcgccact cactacacgc ccactcgaat ggcgcgcggc
     3061 atggccgaaa tctatgcgcg cgtcattggc tcgagcgcgc ccgtcgaatt ggccggtgcg
     3121 gcgtgaggat tgtctacttt acccattcgc ttcgttcctg ctggaaccat gggaatgcac
     3181 attttctaag aggcgtgctg cgcgaattga ttgcgctcgg tcacgatgtg cgcgttctcg
     3241 aacctgaaaa cgcatggagc gtgacgaacc tcgtcaagga tcatggcgaa gaagcgctgc
     3301 aagcattcag taatgcctat cccgagttga gctcgcgcac ttacagtcgc cccgaagaag
     3361 gcgctgctca ggcgtgggga gctgatctcg tgatcgttca cgaatggaac gatccggaac
     3421 tcgtttccgc aattggacgg ctgcgtgcac gcggcggtgg attcacgctc ttatttcacg
     3481 acacccacca ccgcgccgtt tcggctcccg aggaaatgcg cgcctacgat ctcgggtcgt
     3541 atgacggcgt gctcgctttc ggttcgacgc tcgcaagagt gtacgaacgg tggggttggg
     3601 gaaatcgcgt ctatgtctgg cacgaagctg ccgacacgcg gcggttccat ccgccagtac
     3661 gtccgctcac gcgcaacgga atcgtctggg tcggcaactg gggtgatggc gaacgcagcg
     3721 aagaaatcgt cgaattcctt ctgcggccag cacgtgacgc tggtctggcg ctcgacatat
     3781 acggtgtccg ctatcccgat gaggcgcagg ccaagctcgc cgcctttggt gctcattatc
     3841 atggatggat agcgaacgcc gatgcgccga agctatttgg cacgcgcttg gcgaccgttc
     3901 acgtgccgcg gcgattctac acaaaccttc ttcccggaat tccaactatc cgcgtgttcg
     3961 aggcactcgc atgcggcatt ccgctcgttt ctgcgccgtg ggacgattgc gagcacctgt
     4021 tccgcgtcga ccaggatttt ctcatggttc gaagcagcgc ggaaatgacg caggcgctgc
     4081 gtgatctcaa gaacgacccg gagcttcggt ccgccctgtc gcgctacggt ctggagacca
     4141 tcagcaagcg gcatacctgc gctcaccgtg cgcgcgagct actgtcgatc gtcgagcgct
     4201 tgcgcgctcc tgttgcgcga agagtgttgg agagtgccgc gtga
//
LOCUS       DASRBJ010000308        13797 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_500243,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000308 DASRBJ010000000
VERSION     DASRBJ010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 13797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13797)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13797
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_500243"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1245)
                     /gene="nuoL"
                     /locus_tag="VE968_08485"
     CDS             complement(<1..1245)
                     /gene="nuoL"
                     /locus_tag="VE968_08485"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HZU51892.1"
                     /translation="MHPILFIVFLPLVAAIIAGLFGRWIGKTASKVVTTGSLFIGAIL
                     SWPIFLHYISGHADPVVVPVLKWIQSGTLSVDWALRLDSLTAVMLVVVTTVSSFVHLY
                     SWGYMEEDPSQPRFFAYLSLFSFAMLMLVTANSLVQMFFGWEGVGLASYLLIGFWYYK
                     PSANAAALKAFVVNRVGDFGFSLGIFGTFLVFGTVSIPAILAAAPAMAGSTIGFAGMR
                     VDTMTVLCLLLFVGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVFMVCRL
                     SPMFETSETARNVVTYIGAATCIFAATIGCAQNDIKRVIAYSTCSQLGYMFFAAGVGA
                     YGAAMFHLFTHAFFKALLFLGAGSVIHAMHHEQDMRYYGALRKEIPVTFWVMVIGTLA
                     ITGVGVDVGGGIGFAGFWSKDAI"
     gene            complement(1245..1550)
                     /gene="nuoK"
                     /locus_tag="VE968_08490"
     CDS             complement(1245..1550)
                     /gene="nuoK"
                     /locus_tag="VE968_08490"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003051614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HZU51893.1"
                     /translation="MIGLTHYLIVGALLFTIGVLGIFLNRRNVILMLMAIELILLAVN
                     INLVAFSAYLGDLTGQVLAMFVLTVAAAEAAIGLAILVIFFRRRGSIAVDDVNRMHG"
     gene            complement(1547..2152)
                     /locus_tag="VE968_08495"
     CDS             complement(1547..2152)
                     /locus_tag="VE968_08495"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HZU51894.1"
                     /translation="MIAILAFYLFAVLTVASAIAVIFARNPVHSVLWLIVAFFNAAGL
                     MLLLGAEFIAMLLVIVYVGAVAVLFLFVVMMLDIDFATLRSGFSRNLPFGIIIALVLL
                     GEIIVASSAWHARPVLGGGQVPAAKIPNIVALGQLLYSRYLFAFEIAGLILLVAMIGA
                     IVLTHRSRRDRRPQKISRQIARRPDEAVKIVNPPVGEGMKL"
     gene            complement(2177..2656)
                     /gene="nuoI"
                     /locus_tag="VE968_08500"
     CDS             complement(2177..2656)
                     /gene="nuoI"
                     /locus_tag="VE968_08500"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HZU51895.1"
                     /translation="MIAWLKAFTLWDLVRGHALTLKYFFKPKATINYPYEKTPQSPRF
                     RGEHALRRYPNGEERCIACKLCEAICPALAITIEAEPREDGSRRTTRYDIDMVKCIYC
                     GLCQEACPVDAIVEGPNLEFATETREELLYDKAKLLANGDKWEQAIAANLAADAPYR"
     gene            complement(2653..3705)
                     /gene="nuoH"
                     /locus_tag="VE968_08505"
     CDS             complement(2653..3705)
                     /gene="nuoH"
                     /locus_tag="VE968_08505"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006832203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HZU51896.1"
                     /translation="MTGFFVNHGMEYGWAWFIATIIGILVIALPLMLAVAMIIYAERK
                     IWAAMALRRGPNVVGPWGLLQSFADGLKVFLKETIVPTSANKGLFLIAPIVTFTVALI
                     VWAVVPFQAGVVLADVNVGLLYVLAASSLGVYGVIVAGWASNSKYPFFSALRAAAQMV
                     SYEVSIGFVLICVVLYAGSFNISQIVIAQTGHGLGIVNAFGFNLLLFPMWVVFFISSM
                     AETFRTPFDLVEAESELVAGHQTEYSSMSFALFWLGEYANVILMCALNAILFWGGWLP
                     PINWAPLYFVPGIIWLFAKMLFFFFCFGWVKATVPRYRYDQLMRLGWKVFLPLSLVFV
                     FLVSGWLMVTRFGAGA"
     gene            complement(3702..5711)
                     /gene="nuoG"
                     /locus_tag="VE968_08510"
     CDS             complement(3702..5711)
                     /gene="nuoG"
                     /locus_tag="VE968_08510"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_process: GO:0006120 - mitochondrial electron transport,
                     NADH to ubiquinone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HZU51897.1"
                     /translation="MPKVSVDGVEIEVPQGATVLQACELAGKEIPRFCYHERLSIAGN
                     CRMCLVEVKPGPPKPQASCALPAADGQEIRTDTAMVKKAREGVMEFLLINHPLDCPIC
                     DQGGECDLQDQAMAYGRSFSRFEENKRAIDDKYMGPVIKTAMTRCIQCTRCIRFSSEV
                     AGVPEIGMLYRGEDSQISSYLERTVSTELAGNLADVCPVGALLQKPQIFEMRPWELRH
                     VPGIDVMDAVGSNIRLDVRQRQVMRILPRINEDVNEEWISDKTRHHVDAFVRNRLDRP
                     WVREKGKLREASWQEALEIFAKWLKKAGNRIAAIAGDLLDAETMYAAKKLVEAQGSNL
                     LEGRQTGLTYDTTNLSTIAFNSTIAGIENADVVLLVGSNLRWEAPLIATRVRKVARKG
                     GRVFAIGPEVDLGIKTQWLGADLKLLGKLPREVTDAFAAAERPAIIVGPGALAAGGLG
                     AALSLVGPLRLIRDGWNGFNVLHTSASRMAGLILGFAQPGGLSDIEAADPHLVLLLGA
                     DEVPQDKLKRAYKVYIGHHGDKGARMADLVLPGALYAEKHGTYVNTEGRVQRGEKAAF
                     PPGDAREDWAILRAVSQLAGTILPFDNFDELRARMIEEYPQLGREGLIELNWSPPSLP
                     TKAEGTIRYPISDFFLTNAICRASPTMRRCSEELVQGLHYEEAAE"
     gene            complement(5757..6452)
                     /locus_tag="VE968_08515"
     CDS             complement(5757..6452)
                     /locus_tag="VE968_08515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51898.1"
                     /translation="MSLLLSFALGAAAAAGADPADNALAISPRQIHALVAEYADCIVK
                     NERRAAEDAILKDVSDREFHDDYPQLVQELCIPNARSQDVQIDFTPSEMREAIAEALV
                     RREFASVPPPVLDDVPALSHRSVAEVQPAASAPASEIAASERARADAYIDHFGECVVR
                     VDPAGSKRLILTDAFTDAEAAAFNGMRTALGTCLAEGKSLNFGKAALRGSIAINYYRL
                     AVAARNMAPGAAQ"
     gene            complement(6449..7774)
                     /gene="nuoF"
                     /locus_tag="VE968_08520"
     CDS             complement(6449..7774)
                     /gene="nuoF"
                     /locus_tag="VE968_08520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HZU51899.1"
                     /translation="MGYTGPLADKDRIFTNLYGFQSPYLAAARQRGDWADTKALFGIG
                     QDGIIDRIKASGLRGRGGAGFPTGMKWSFMPKEPKPGKPNFLVINADESEPGSCKDRE
                     IIRHDPHKLIEGALIASFAMRARAAYIYIRGEFIQESRVLERAVAEAYEAGLIGKNAS
                     GTGYDFDLFVHRGAGAYICGEETAMLESLEGKQGKPRLKPPFPAGAGLYGCPTTVNNV
                     ESIAVVPTILRRGAEWFASIGREKNEGTKLFQLSGHVNTPCVVEESMGISFRELISRH
                     GHGVRGGKNADDFSNLLAVIPGGSSVPLVPANEILDAPMDFDGLKALGSGLGTAAVIV
                     MDKSTDVVRAISRISYFYKHESCGQCTPCREGAGWMWRMMERLREGDAEVQDIDKLLD
                     VTKQIEGHTICALGDAAAWPIQGLIRHFRPELERRIAERAARQMLQAAE"
     gene            complement(7774..7914)
                     /locus_tag="VE968_08525"
     CDS             complement(7774..7914)
                     /locus_tag="VE968_08525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51900.1"
                     /translation="MTILAILVAVVLAFLAFQFIKGVIKFAVLAVIVLFGLFIAHQAG
                     AF"
     gene            complement(7911..8057)
                     /locus_tag="VE968_08530"
     CDS             complement(7911..8057)
                     /locus_tag="VE968_08530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51901.1"
                     /translation="MIGFIVAAILAILFIGIVLKIIKIAVILALCVGLYLFAQNKFGT
                     KRLK"
     gene            complement(8054..8746)
                     /locus_tag="VE968_08535"
     CDS             complement(8054..8746)
                     /locus_tag="VE968_08535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase subunit E"
                     /protein_id="HZU51902.1"
                     /translation="MAGQGSFVDDAEQRARWEGFQWTGENARKAKEVIARYPAGRQVS
                     AVIPLLDLAQRQVGAETNTQGWLPIPVMEFVAKELDTSYIRVLEVATFYTMFNLHEVG
                     RFHVQVCGTTPCMLRGSDDVFKACYARGLKKGKTSEDGLFTLTEVECLGACANAPMVQ
                     INDDNYEDLTEESMGAILDALAAGQMPKPGPQVDRQTSCPMGGPTTLKKMAERNYDYR
                     SQWTATAEEGAQ"
     gene            complement(8746..10074)
                     /locus_tag="VE968_08540"
     CDS             complement(8746..10074)
                     /locus_tag="VE968_08540"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007015098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HZU51903.1"
                     /translation="MTDTRTDMEARDRSGRTNGSGKAIRIRTVEVSLGAGGEGEEFRD
                     ELGHLRDPGDERISNYTINFGPQHPAAHGVLRLILELDGEVVERVDPHVGLLHRGTEK
                     LIEYKTYAQAIPYFDRLDYCSPMCMEHSFVLAIEKLLGLEIPLRAQYIRTMMAELTRI
                     KNHMLNLGSHIMDVGAMTPNLWLFEIREDLMQIYEHVSGARMHANYFRVGGVREDIPP
                     AVLDKIGEFLDHRLQLFEDAIALVADNRIFKQRNVDIGVVGRDDAIAWGFSGPMIRAS
                     GIPWDIRKSQPYEIYDRMAFDIPVGTNGDCYDRFMVRVEEVRQSWKIARQCLKEMPAG
                     PIGADSKVFPPSRESMKTSMESLIHHFKLYTEGFHVPEGEVYVATESPKGEFGVYLVA
                     DGTNRAYRCKIRPTGFSHLQAMDFMMKGHMLADTTAILSAIDIVFGEVDR"
     gene            complement(10071..10961)
                     /locus_tag="VE968_08545"
     CDS             complement(10071..10961)
                     /locus_tag="VE968_08545"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HZU51904.1"
                     /translation="MPVNLASHVPKTAPNDGVIDAAKAALGDSLKEVREHVGEIMLIV
                     ERESITEVCRALRDTPGLEYQQLMDIAGVDYPQRAERFDVNYCLLSLTRNRRIVVKVM
                     TDEQTPVPTVTGLWPVAGWLEREVFDMYGVTFVGNSDLRRILTDYGFEGYPFRKDFPL
                     TGHVEMRYSEAEKRVVYEPVALPQDFRTFDFLMPWEGPAYVLPGDEKAKAEAPGAPSP
                     VAAPSGPAPQNVKTPVDNDRTSEAPSEGGAQNKADAVAKRQARKSSKAKAEQEVSKPS
                     DTPDPKPKGSSRRRPGGGAG"
     gene            complement(10961..11482)
                     /locus_tag="VE968_08550"
     CDS             complement(10961..11482)
                     /locus_tag="VE968_08550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HZU51905.1"
                     /translation="MAGLVPGEVDQAKLVELQQSLNEKGFMVTTAEDLFTWARTGSLW
                     WMTFGLACCAVEMIHVNMPRYDLERFGAAPRASPRQSDVMIVAGTLCNKMAPALRRVY
                     DQMSEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQ
                     LQRKIRREGTIER"
     gene            complement(11533..11910)
                     /gene="ndhC"
                     /locus_tag="VE968_08555"
     CDS             complement(11533..11910)
                     /gene="ndhC"
                     /locus_tag="VE968_08555"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015456783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HZU51906.1"
                     /translation="MASVAAGYLPILLFLIIALGLSTAFVVLPMIVARLTGTHKPDPA
                     KLSEYECGFPAFEDARAEFDVRFYLVAILFIVFDLEAAFLFPWAVSLNFTKWSGWAAM
                     IIFLVELGLGLAYAWKKGALEWE"
     gene            complement(12081..12893)
                     /locus_tag="VE968_08560"
     CDS             complement(12081..12893)
                     /locus_tag="VE968_08560"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019367966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HZU51907.1"
                     /translation="MVAHSGLITVMQRAARKAAPRLRRDFGEVEQLQVSRKGPADFVS
                     MADKRAEQTIVEELRNARPDWGLLLEEGGEIEGNPDKPRWVVDPLDGTTNFLHGIPHF
                     SISIAVEERKPGGGSEITQGLVYQPLTDESFWAEKGRGAWLQDARLRVSARRDLADSV
                     IGTGIPFLGRGDPVQWAKIYTNVAPNVAGIRRFGSAALDLAWVAAGRMDGFWEDALDL
                     WDTAAGVLLVREAGGFVSDYRGSDQMFKRGEYVAANGEVHSRLHKLIAGALR"
     gene            complement(12964..13527)
                     /gene="efp"
                     /locus_tag="VE968_08565"
     CDS             complement(12964..13527)
                     /gene="efp"
                     /locus_tag="VE968_08565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HZU51908.1"
                     /translation="MKISGVDIRPGNIIEYEGGIWRAVKIQHTQPGKGGAYMQVEMKN
                     LIDGRKTNVRFRSAETVERVRLDTKDFQFLYHDGDMLVFMDKDTYDQVSLPEDLLGDA
                     AEFLQDGMDVVMELYNERPISVQLPDQVEATIVEADAVVKGQTASSSYKPALLDNGVR
                     VMVPPHITSGTRIVVDVYNREYVRRAD"
     gene            complement(13594..>13797)
                     /locus_tag="VE968_08570"
     CDS             complement(13594..>13797)
                     /locus_tag="VE968_08570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde-activating protein"
                     /protein_id="HZU51909.1"
                     /translation="ENIKFVRVGTLDEGERIQPDAHFFVRSKHPWVVIPDGLPRFETL
                     PQSGDPPLMSSEAEARLAAARRA"
BASE COUNT         2870 a         4265 c         4059 g         2603 t
ORIGIN      
        1 aatggcgtcc tttgaccaga agccggcaaa gcctatgccg ccaccaacgt cgacgccaac
       61 gccggtgatc gcaagtgtgc cgataaccat gacccagaag gtaaccggga tctccttacg
      121 aagagcgcca taataacgca tgtcctgctc gtggtgcatg gcgtggatca ccgagcccgc
      181 gccgaggaac agaagcgcct tgaagaaggc gtgcgtaaag aggtggaaca tcgccgcgcc
      241 gtaagcaccg acaccagccg caaagaacat gtaaccgagc tgcgagcagg tcgaataagc
      301 aatgactcgc ttgatgtcgt tctgggcaca gccgatcgtc gccgcgaaga tgcaggtagc
      361 cgcaccgata taggtcacga cgttgcgcgc ggtctcgctc gtctcgaaca tcggcgagag
      421 acggcagacc atgaacacgc ccgcggtgac catcgtcgcg gcatggatca gcgcgctaac
      481 cggcgttggg ccttccattg cgtcgggcaa ccatgtgtgc agcggcagct gtgccgattt
      541 gcccatcgca ccaacgaaca ggagcaggca aagaacggtc atcgtatcga cgcgcatccc
      601 ggcaaagccg atcgtcgagc cggccatggc gggggctgcg gcaaggatcg cggggatgga
      661 cacggttcca aacacgagaa acgtgccaaa gatgccgaga ctgaagccga aatcgccgac
      721 gcgattgacg acgaatgctt tgagcgctgc agcgtttgcc gacggcttgt agtaccagaa
      781 gccgatcagc aggtaggacg ccagtccgac gccttcccaa ccgaagaaca tctgcaccag
      841 gctgttggcc gtcaccagca tcagcatcgc gaaactgaac agcgaaagat aggcgaagaa
      901 gcggggttgg ctcggatcct cctccatata gccccagctg tagaggtgga cgaagctcga
      961 gaccgtcgtc accacgacca gcatcaccgc cgtcaggcta tcgagccgca atgcccagtc
     1021 cacactcagc gttccggact ggatccactt cagcaccggc acgacgactg gatcagcatg
     1081 cccgctgata taatggagaa agatcggcca gctgaggatt gcaccgatga agagagaacc
     1141 ggtggtgacc actttcgaag cggtcttgcc gatccagcga ccgaacagcc cagcgatgat
     1201 ggcggcgacg agcggcagaa aaacgatgaa gagtattggg tgcatcagcc gtgcatccgg
     1261 ttgacgtcgt cgaccgcgat cgaaccgcga cgacggaaga agataacgag gatcgcaagg
     1321 ccaatcgcag cttccgcagc cgctacggtc agcacgaaca tggcgaggac ctggcctgta
     1381 agatcgccaa gatacgcgga gaaagccacg aggttgatgt tcacggccaa gagaatgagc
     1441 tcgatcgcca tcaacatcag gatcacgttg cgccgattga ggaagatacc gaggacgccg
     1501 atcgtgaaca gcagggctcc gacgatcaga taatgtgtaa gaccaatcat aacttcatgc
     1561 cctcgccgac cggcggattt acaatcttga ccgcctcgtc cgggcggcgg gcaatctggc
     1621 gggagatttt ctgcggccga cgatcgcggc ggctacgatg cgtaagaacg atcgcgccga
     1681 tcattgcgac caaaaggatg aggcccgcaa tctcgaaggc gaacaggtaa cggctgtaga
     1741 ggagctgccc aagcgcaacg atgttgggaa tcttcgccgc gggtacttgg ccgccgccaa
     1801 ggaccggcct ggcgtgccac gcgctgctcg cgacaatgat ctcgccaaga aggacaagtg
     1861 cgatgatgat tccaaagggc aggttgcgcg aaaagcccga gcgaagcgtc gcgaagtcga
     1921 tgtcgagcat catcacaaca aacaggaaca gcaccgctac ggcaccgaca tagacgatga
     1981 cgagcagcat cgcgatgaac tcggcaccga gcagaagcat cagccccgca gcgttgaaga
     2041 aggcgacgat cagccaaaga acgctgtgca ccggattgcg ggcaaagata accgcgatcg
     2101 ccgaagcgac cgtgagcacc gcgaaaaggt aaaaggcgag gattgcgatc aagctggaga
     2161 ccctgttgcg gcgcgcttat cggtagggcg cgtcggcggc aagattagcg gcgattgcct
     2221 gctcccactt gtcgccattg gcgagcagtt tcgccttgtc gtagagcagt tcctcgcgcg
     2281 tttcggtcgc gaattcgaga ttgggccctt cgacgattgc atcgaccggg cacgcttcct
     2341 ggcacaatcc gcaatagatg cacttgacca tgtcgatgtc ataacgggtg gtccggcggc
     2401 ttccgtcttc gcggggttcc gcttcgatcg tgattgcaag tgctggacag atcgcctcgc
     2461 acaacttgca ggcaatgcac cgttcctctc cgttcgggta ccggcgcaat gcgtgctcgc
     2521 ctcggaagcg cgggctctgc ggggtcttct catagggata gttgatcgtt gccttgggct
     2581 tgaagaaata tttcagcgtc agcgcatggc cgcgcaccag atcccacaaa gtgaatgcct
     2641 tgagccaagc aatcatgcgc cggctccaaa acgagtgacc atcaaccatc cagaaactag
     2701 aaagacgaag acaagcgaca acggcaggaa gaccttccag ccgagccgca tcaactgatc
     2761 atagcggtag cgcgggactg tcgccttcac ccacccaaaa cagaagaaga agaacagcat
     2821 cttggcaaac agccagatga tcccggggac aaaataaagc ggcgcccagt tgatgggtgg
     2881 tagccaaccg ccccagaaga ggatggcatt aagcgcgcac atcaggatca cgttggcata
     2941 ttcaccaagc cagaacagtg cgaagctcat cgacgaatat tccgtctgat gcccggcgac
     3001 gagctcgctc tcggcttcga cgaggtcgaa cggcgtgcgg aacgtctcgg ccatcgagct
     3061 gatgaagaat acgacccaca tcggaaacag cagcaggttg aatccaaagg cattgacgat
     3121 gccaaggcca tggcccgtct gcgcaatcac gatctggctg atgttgaacg agcccgcata
     3181 aagcacgacg cagatcagca cgaaaccgat cgagacttcg tagctcacca tctgggcagc
     3241 cgcgcgaagc gccgagaaga acggatattt ggagtttgac gcccagccgg cgacgatcac
     3301 gccatagacc ccgagcgaac ttgccgcgag gacataaaga agaccgacat tgacgtcggc
     3361 aagcaccacg cctgcctgga acgggaccac ggcccagacg atcagtgcca ccgtgaaggt
     3421 cacgatcggc gcgatcagga agagcccctt gttcgcgctg gtcgggacga tcgtttcctt
     3481 aaggaagacc ttgaggccgt cggcaaagct ctgcagcaat ccccatggac caaccacatt
     3541 gggccctcga cgaagcgcca tggcggccca gatcttgcgc tcggcgtaga tgatcattgc
     3601 gaccgcaagc atcagcggga gcgcgatgac gagaatgccg atgatcgtgg ctatgaacca
     3661 ggcccagcca tattccatgc cgtgattgac gaagaagccc gtcattctgc ggcctcctcg
     3721 tagtgaagac cctggaccag ctcttccgag caccgccgca tcgttgggct tgcacggcaa
     3781 atggcattgg tcaggaagaa gtccgatatc gggtagcgaa ttgtcccttc ggctttcgtc
     3841 ggaaggctcg gcggcgacca gttgagctca atgagcccct cgcggccaag ctgcggatat
     3901 tcctcgatca tccgcgcgcg cagctcgtcg aaattgtcaa acggaagaat agtaccggca
     3961 agctgtgaaa ctgcccgaag gatcgcccag tcctcgcgag catcgcccgg cgggaacgcc
     4021 gccttttcgc cgcgctgcac gcgcccctcg gtatttacgt aggtgccgtg cttttcggca
     4081 tagagagcac caggaagcac gagatccgcc atgcgtgctc ccttgtcgcc gtggtgcccg
     4141 atataaacct tgtaggcccg cttcagcttg tcctgcggaa cttcgtcggc accaaggagc
     4201 agcacgaggt gcggatcggc tgcctcgatg tcggaaaggc ccccgggctg ggcaaagcca
     4261 aggatgagac ccgccattcg cgacgccgaa gtatgaagga cattgaagcc gttccagccg
     4321 tccctgataa ggcgcagcgg accaaccagc gaaagcgccg caccaagtcc gcccgccgca
     4381 agagcgccag gcccgacgat gattgccgga cgctcggccg cggcgaacgc atcggtcact
     4441 tcgcgcggca atttgccaag cagcttcaga tccgcgccaa gccactgcgt cttgatgccc
     4501 aggtcgactt cgggcccgat cgcaaagacc ctgccgcctt tgcgcgcgac cttgcgcacg
     4561 cgtgttgcaa taagcggggc ttcccagcga aggttcgaac cgacgagcag caccacgtcg
     4621 gcattctcga tcccggcaat agtcgagttg aacgcaatcg ttgaaaggtt cgtcgtgtcg
     4681 tacgtaagcc cggtctgtcg accttcgagc aagttcgagc cttgggcttc aacaagcttc
     4741 ttcgcggcat acatggtctc agcgtcgagc aggtcgccag cgattgctgc gatcctgttg
     4801 cccgccttct tgagccactt agcgaagatc tcgagggctt cttgccagct tgcttcgcgc
     4861 agcttgcctt tttcccggac ccacggccga tcgagacggt tgcgaacgaa agcgtcgaca
     4921 tggtgacgcg tcttgtcgct tatccattcc tcgttcacgt cttcgttgat ccgagggagg
     4981 atgcgcatca cctgccgctg gcgaacgtcc agcctgatgt tcgaaccaac ggcatccatg
     5041 acgtcgatgc cggggacgtg acgcagttcc cagggacgca tctcgaagat ttgcggcttc
     5101 tgaagcagcg ctccaacggg gcacacgtcg gcgagattgc cggcaagctc cgtcgaaacc
     5161 gtccgctcga ggtaggagct gatctggctg tcctcgcccc gatacagcat gccaatctcg
     5221 ggaacacccg caacttcgga cgagaagcgg atgcagcgag tgcactggat gcagcgcgtc
     5281 atcgcggtct tgatgacggg acccatatat ttgtcgtcga tcgcccgctt gttttcttca
     5341 aaccgcgaga agctccggcc gtaagccatc gcctggtcct gaaggtcgca ttcgccgccc
     5401 tggtcgcaaa tcgggcaatc gagcggatgg ttgatgagga ggaactccat cactccttcg
     5461 cgcgccttct tgaccatcgc cgtgtcggta cgaatttcct gcccgtcggc ggccggaagc
     5521 gcacaactcg cctggggctt gggcggcccg ggcttcactt ccacgaggca catccggcaa
     5581 ttgcccgcga ttgaaagccg ctcgtgatag cagaaccgcg ggatctcctt gccggcaagc
     5641 tcgcaggcct ggagcacggt cgctccctgg ggcacctcga tctcgacgcc gtcgacactg
     5701 accttaggca tcgttcgagc ccttctcctt caaatccttg cgcgtcatta tgagcatcac
     5761 tgcgctgctc cgggcgccat gttccgagca gcgactgcaa gccggtaata attgatcgcg
     5821 atcgagccgc ggagcgccgc cttgccaaag ttcagtgact tgccctccgc aaggcaggtt
     5881 ccaagagccg tgcgcatccc gttgaaggcc gcggcctccg cgtccgtgaa cgcgtctgtc
     5941 aggatcaacc tcttcgagcc tgccgggtcg acccgcacca cgcattcgcc gaaatgatcg
     6001 atgtaagcgt ccgcgcgcgc acgctcgctc gccgctattt cagaggcagg cgcactcgct
     6061 gctggctgaa cttcggcaac gctgcggtgt gaaagtgcgg gcacgtcgtc aagaactggc
     6121 ggcggcacac tcgcgaactc gcgacgcacg agcgcctcgg caatggcctc gcgcatctcg
     6181 ctcggcgtga agtcgatctg cacatcctgg cttcgcgcat tgggaatgca aagttcttga
     6241 acgagctgag ggtagtcatc gtggaattcc ctgtcgctca cgtccttgag aatggcgtcc
     6301 tcggcagcgc gacgctcatt cttgacgatg cagtcggcat attccgcgac cagcgcgtgg
     6361 atctggcgcg gcgagatagc aagcgcgttg tcggcaggat cggccccggc cgcggctgcc
     6421 gcgccaagcg caaaggaaag cagcaggctc attcggccgc ctggagcatt tgccgggccg
     6481 cccgctcggc aatacggcgc tcgagctcgg gccggaagtg ccggatcaat ccctggatcg
     6541 gccaggctgc agcatcccca agcgcgcaga tcgtatggcc ttcgatctgc ttggtaacgt
     6601 caagcagctt gtcgatgtcc tgcacctcgg cgtcgccctc gcgaagccgc tccatcatgc
     6661 gccacatcca tcccgcgccc tcgcgacaag gcgtgcactg gccgcagctc tcgtgcttgt
     6721 agaaatagct gatgcggctg attgcgcgca cgacgtccgt ggacttgtcc atgacgatga
     6781 ctgctgccgt tccgagcccg ctcccaagcg cctttaggcc atcaaagtcc atcggtgcat
     6841 cgagaatctc gttcgccgga accagcggaa ccgaagatcc gcccggaata acggcaagca
     6901 agttgctgaa atcgtcggca ttcttgcctc cccgcacgcc atgtccgtga cggctgatca
     6961 actcgcggaa gctgatcccc atcgactcct cgacgacgca cggcgtgttc acgtggccgg
     7021 atagctggaa aagcttcgtg ccttcattct tttcgcggcc gatgctcgcg aaccactccg
     7081 cgccccgtcg caggatggtt ggaacgaccg cgatcgattc cacattgttg actgttgtcg
     7141 gacagccata gagtccggcc cctgccggga acggcggctt caggcgtggt ttaccctgct
     7201 tgccctcgag gctctcgagc atcgccgttt cttcgccgca gatataagcg ccggcgccgc
     7261 ggtggacgaa caggtcgaaa tcatatccgg tgccgctcgc gttcttgcca atcaggcccg
     7321 cctcataagc ttcggcaacg gcacgctcca acacgcggga ttcctggatg aattccccac
     7381 gaatgtagat gtaggcggcg cgtgcgcgca tcgcgaaact ggcaatcaac gcgccttcga
     7441 tcagcttgtg cggatcgtgc cggatgattt cccggtcctt gcagctcccg ggctcggatt
     7501 cgtccgcatt gattaccagg aaattgggtt tgccgggctt tggctccttg ggcatgaagc
     7561 tccacttcat acccgtcggg aaacccgcgc cgccacgtcc gcgcaggccc gacgccttga
     7621 tgcgatcgat gatgccgtct tggccaatac cgaacagtgc cttcgtatcg gcccagtcgc
     7681 cacgctggcg tgccgccgcc agatagggcg attggaaacc gtacaggttg gtaaagatgc
     7741 ggtccttgtc cgcaagtggc ccggtgtagc ccatcagaac gcccctgcct ggtgagcaat
     7801 gaaaagaccg aacaggacga tgacggcaag aacggcgaac ttgatcacgc ccttgatgaa
     7861 ctggaacgcg agaaacgcga gtacgaccgc gacgaggatg gcaaggatcg tcatttcagc
     7921 cgcttcgtcc cgaacttgtt ctgagcaaag aggtaaaggc caacgcacag tgcaaggatc
     7981 accgcgatct tgatgatctt gagaacaatc ccaatgaaga ggatcgcgag aatggcagca
     8041 acgatgaaac caatcattgc gcgccctcct ccgccgtcgc ggtccattgc gaccgatagt
     8101 cgtaattgcg ctcggccatc ttcttgagtg tcgtcgggcc gcccatcggg cagctggtct
     8161 gccggtctac ctggggacct ggtttcggca tctgtcccgc cgcgagcgca tcgagaattg
     8221 cgcccatgct ttcctcggta agatcctcgt aattgtcatc gttgatctgg accatgggtg
     8281 cattcgcgca ggcgccgagg cactcgacct ccgtcagcgt gaatagccca tcctcgctcg
     8341 tcttgccctt tttgaggcct cgcgcgtaac acgccttgaa gacgtcgtcc gagcccctca
     8401 gcatgcacgg cgtcgtaccg cacacctgga catggaaacg accaacctcg tgcaggttga
     8461 acatcgtgta aaaagtcgca acttcgagca ctcggatgta ggaggtatcg agctcttttg
     8521 cgacgaactc catcaccggt attggaagcc agccctgcgt attcgtttcg gcgccaacct
     8581 ggcgctgtgc gaggtcaagt agcggaatga ccgctgagac ctgccgacca gccgggtaac
     8641 gagcaatcac ttccttggct ttgcgcgcat tctccccggt ccactggaac ccttcccagc
     8701 gggctcgttg ctcggcgtcg tcaacaaagg acccctgacc agccatcagc gatccacctc
     8761 cccgaacacg atatcgattg ccgagagaat ggccgtcgta tcggcgagca tgtggccttt
     8821 catcatgaag tccattgctt gcaagtggga gaaaccggtc ggtcggatct tgcagcgata
     8881 ggcacggttc gtgccgtccg cgaccaaata gacgccgaac tcacccttcg ggctttccgt
     8941 cgcgacgtag acttcgcctt ccggaacgtg aaagccctcc gtgtagagct tgaagtgatg
     9001 gatgagagat tccatcgacg ttttcatcga ttcgcggctc ggcggaaaca ccttgctgtc
     9061 cgcaccgatt ggtcctgccg gcatttcctt caggcattgg cgggcgatct tccagctttg
     9121 ccgcacttcc tcgacgcgaa ccatgaaacg gtcatagcag tcgccattcg ttccaaccgg
     9181 gatgtcgaat gccattcgat cgtagatctc gtacggctgc gacttgcgta tgtcccaggg
     9241 aatgccggaa gcgcggatca ttggaccaga aaagccccaa gcgatcgcgt catctcgtcc
     9301 aacgacgccg atgtcgacat tgcgttgctt gaagatgcga ttgtccgcca cgagtgcaat
     9361 cgcatcctcg aacagctgca atcggtgatc gaggaactcg ccaatcttgt cgagcaccgc
     9421 gggtggaatg tcctcgcgca cgccgcccac gcgaaaataa ttggcgtgca tccgggcacc
     9481 cgacacgtgc tcgtaaatct gcatgaggtc ttcgcgaatt tcgaatagcc acaggttcgg
     9541 cgtcatcgca ccgacgtcca tgatgtggct tccaagattc aacatgtggt tcttgatgcg
     9601 ggtgagctcc gccatcatcg ttcgaatata ttgtgcgcgt agcgggatct cgaggccgag
     9661 gagtttctcg atcgcgagca cgaagctgtg ctccatgcac attggcgagc agtaatcgag
     9721 acgatcgaag taagggatcg cctgcgcata agtcttgtac tcgatcagct tctcggtgcc
     9781 gcggtgaagc aagccgacgt gcggatccac gcgttcgacc acttcgccgt cgagctcaag
     9841 gatgagccga agcacgccgt gcgcggcggg atgctgcggc ccgaagttga tcgtgtaatt
     9901 gctgatccgc tcgtcgccgg ggtcgcgcag gtgtccgagc tcgtcgcgga actcttcgcc
     9961 ttcaccgccc gcgccgaggc tcacctcgac cgtgcggatg cggatggcct tcccgctgcc
    10021 gttcgtccga ccgctgcggt cccgcgcttc catgtccgtg cgcgtatcgg tcatcctgca
    10081 cctccaccgg gtcgacgccg gctgctgccc ttaggcttgg gatcgggcgt atcgcttggc
    10141 ttgctgacct cctgttcagc cttggccttc gaagacttgc gtgcctgccg cttggcaaca
    10201 gcgtcggcct tgttctgcgc acccccttca ctcggcgctt cggacgttcg gtcgttgtcg
    10261 acgggcgttt tgacattctg tggcgcaggg ccgctcggag cagcgaccgg gctcggcgct
    10321 cccggcgctt ctgccttggc cttttcgtca ccgggcaaga cataggccgg gccttcccag
    10381 ggcatcagaa aatcaaacgt tcggaagtcc tgcgggagtg caaccggctc gtagacgacg
    10441 cgcttctcgg cttcggagta gcgcatctcg acgtggccgg tcagcggaaa gtccttccgg
    10501 aacggatacc cttcgaaacc atagtcagtg aggattcgcc gaaggtccga gttgccgacg
    10561 aatgtcactc cgtacatgtc gaacacctcg cgctccagcc agcccgcgac gggccacaag
    10621 ccagtgacgg tcggtaccgg ggtctgctcg tcggtcatga ccttaacgac gatccgacgg
    10681 ttacgcgtga gcgacaacag gcagtagttg acatcgaacc gctcggcacg ctgcggataa
    10741 tcgacaccgg cgatgtccat gagctgctga tattcgagac cgggcgtgtc gcggagcgct
    10801 cggcagacct cggtgatcga ctcgcgctcg acgatgagca tgatctcgcc gacatgctcg
    10861 cgcacttcct tgagcgaatc gccgagcgcg gccttggcgg cgtcgattac gccatcattg
    10921 ggtgccgttt tcggcacatg ggaagcaaga ttgaccggca tcagcgttca atcgtccctt
    10981 cccgcctgat cttacgctga agctgaagga tgccgtaaag cagcgcttcg gcggtcggtg
    11041 gacagcccgg cacgtagata tcgacgggaa cgatcctgtc gcagccgcgc accaccgaat
    11101 agctgtagtg atagtaaccg ccgccgttgg cgcaactacc catcgagatc acgtagcgag
    11161 gctcgctcat ctggtcatag acgcgccgca aagcgggggc catcttgttg cacagagtgc
    11221 ccgcgacgat catcacatcg gactggcgtg gtgatgcgcg tggcgccgca ccaaaccttt
    11281 caagatcata acgcggcatg ttcacatgga tcatttcgac cgcgcaacaa gccagcccaa
    11341 acgtcatcca ccacagtgaa cctgtccttg cccaggtgaa gagatcctcg gccgtcgtga
    11401 ccatgaatcc cttttcgttc agcgattgct gaagctcgac gagctttgcc tgatcgactt
    11461 cgccggggac gagcccagcg atgcgcgcaa gctcttcttc cgtcggcatc cgatcttcgg
    11521 ggccacgaag catcactccc attcgagtgc ccccttcttc caggcatagg cgaggccaag
    11581 cccaagctcg accaggaaga tgatcatggc cgcccagcca ctccacttgg tgaagttgag
    11641 gctgaccgcc cacggaaata ggaacgctgc ttcgaggtca aagacaatga acaggatcgc
    11701 gacgaggtag aaacgcacgt caaattccgc tcgggcatcc tcgaaggcag ggaagccgca
    11761 ttcatactcg ctaagcttcg ccggatcggg cttatgcgta ccggtcaggc gagcaacgat
    11821 catgggcagc actacgaagg ccgtcgaaag gcccagtgca atgatgagga acagcaggat
    11881 cggcaggtag cctgcggcaa cgcttgccaa gggaaaatac tccgggatcg aaaacttgcg
    11941 ggcgctttag gacagcgaac tcagagccgc aacaccatca agcgagcaaa tgcgtttctt
    12001 ggcgattcga gccattcgga gggtcatttt cgatgaggat cgccatccga gccttatctc
    12061 gagcgacggt ctcgaacgcg tcaacgaagc gcgccggcaa tgagcttgtg gaggcgcgag
    12121 tgaacctcgc cgttggcggc gacatactcg ccgcgtttga acatctggtc ggaaccgcgg
    12181 taatcgctga caaatccgcc ggcctcgcga acaagcaata cgcccgccgc cgtgtcccaa
    12241 agatcgagcg cgtcttccca gaagccgtcc attcttccag cagcaaccca cgcaaggtcg
    12301 agtgctgccg agccgaagcg gcggatccca gcaacatttg gagcgacatt ggtgtaaatc
    12361 ttggcccatt gaacggggtc cccgcggccg agaaaaggga tgccggtccc aattacgctg
    12421 tccgcgaggt cgcgacgcgc cgaaactctg aggcgcgcgt cctggagcca cgcgcccctg
    12481 cccttctccg cccagaagct ctcgtccgtc aaaggctggt aaaccagccc ttgggtgatt
    12541 tcgcttccgc cgccgggctt gcgttcttca acggcaattg aaatcgaaaa atgcgggatt
    12601 ccatgcagga agttcgtcgt cccatcgagc ggatcaacaa cccaccgcgg cttatccgga
    12661 ttgccctcga tctctccccc ctcttcgagg agcaagcccc agtcggggcg cgcgttgcgc
    12721 agctcctcga cgatcgtctg ttccgcccgc ttgtccgcca tggacacgaa atcggccggt
    12781 ccctttcggc tcacctgaag ctgttcaact tcgccgaagt cccggcgcag ccgcggcgcc
    12841 gcctttcgcg cggcgcgctg catgacggtg atcagtccgg agtgggcaac cactcacaac
    12901 ctccctgtat cgagcgaagg acgataagtc cctcgtcggg ctgatgacga tttgccgacg
    12961 cggctagtcc gcgcggcgga catattcgcg attgtaaaca tcaaccacga tcctcgttcc
    13021 gctcgtgatg tgcggcggga ccattactcg tacgccattg tcgaggagag cgggcttgta
    13081 cgacgagctt gccgtctggc ccttaacgac ggcatcagcc tcgacgatgg tcgcttcgac
    13141 ctggtccgga agctgaacac tgatcggacg ttcgttgtag agttccatga cgacatccat
    13201 gccgtcctgg aggaactcgg cggcatcgcc gagcaggtct tccgggagcg acacctggtc
    13261 gtaagtgtcc ttgtccatga agacgagcat gtcgccatcg tgatagagaa attggaaatc
    13321 cttggtgtcg aggcggacgc gctcgaccgt ctcggccgag cggaagcgga cgttcgtctt
    13381 gcgcccgtcg atgaggttct tcatttcaac ctgcatgtac gcgccgcctt tgccgggctg
    13441 cgtgtgctgg atcttgaccg cacgccagat gccgccctca tattcgatga tgttgccggg
    13501 acgaatgtcc acgccgctga tcttcatgtt tgtctctcgg gagtttcagg aatttcgcgc
    13561 cggcctttag tggcgcccca gcggccgggc aagtcaggcg cgccgcgccg ccgcgagacg
    13621 cgcctcggct tctgaactca tgagcggcgg atcgccactt tgggggagcg tttcgaaccg
    13681 cggcagcccg tcgggaatga cgacccacgg atgcttgctg cgaacgaaaa aatgggcgtc
    13741 gggctggatg cgttcgccct cgtccagcgt gcccacacga acaaacttga tattttc
//
LOCUS       DASRBJ010000309         3310 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_342014,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000309 DASRBJ010000000
VERSION     DASRBJ010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3310
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342014"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            166..1035
                     /gene="yghU"
                     /locus_tag="VE968_08575"
     CDS             166..1035
                     /gene="yghU"
                     /locus_tag="VE968_08575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019051737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HZU51910.1"
                     /translation="MNDYVPPKVWKWEQPSGGQFANINRPIAGSTHEKELPVGKHPFQ
                     LYSLATPNGQKVSIMLEELLQKGHQDAEYDAWPIRIGEGDQFGSGFVAINPNSKIPAL
                     VDRSGSPPVRIFESGAILMYLAEKFDEFLPRSGAKRAETLSWLFWQMGSAPFLGGGFG
                     HFFSYAPTKIEYAINRYAMEAKRQLDVLNKRLAETEYVAGPDYTIADIAIWPWYGGVA
                     LGRTYHGADEFLGAHEYEHLMRWARAIDSRPAVKRGRIVNKLTGDPSEQLHERHDASD
                     FALRTEDKLQPVA"
     gene            complement(1158..1706)
                     /locus_tag="VE968_08580"
     CDS             complement(1158..1706)
                     /locus_tag="VE968_08580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51911.1"
                     /translation="MRRLFAVSLSALIVTPAFAASAPQESWGKAGITLAQYREDALEC
                     GLKGHYTDVSQTQDAKELVKASRQLDNLQSTFGPGTGAPGTGAAGASEADQMGEYAAS
                     QQHIIDSARPDLRYRDIKKTLEATTAQCLAQRGYSKFTLTSEQRHRLGKLKAGSDERR
                     AYLYSLASNAAVLESQKTPAQP"
     gene            complement(1746..2873)
                     /gene="tgt"
                     /locus_tag="VE968_08585"
     CDS             complement(1746..2873)
                     /gene="tgt"
                     /locus_tag="VE968_08585"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HZU51912.1"
                     /translation="MSRFSFSIDATDGAGRTGSIVMNRGEIRTPAFMPVGTAATVKAM
                     RPEAVRASGADIILGNTYHLMLRPGAERVAGLGGLHRFMHWDRPILTDSGGYQVMSLS
                     DLTKVSEEGVSFASHLDGSRHMLSPERSIEIQRLLDSDILMQFDQLVPTTSMPEAQRE
                     AMDRSIRWARRSRDEFDRGAAHAERAAIFGIQQGALDQDLRRGSAEALIDIGFDGYAV
                     GGLAVGEGQEAMLGCLDFAVGMLPADKPRYLMGVGKPDDIVEAVRRGIDMFDCVLPTR
                     SGRTGQAFTADGPINIRNARFAEDRDPIEQGCRCPACTSFSRAYVHHLVKAGEILGAM
                     LMTEHNLWFYQRMMEGLREAILKRNLAMFATSFLERYRRAR"
     gene            complement(2971..>3310)
                     /locus_tag="VE968_08590"
     CDS             complement(2971..>3310)
                     /locus_tag="VE968_08590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S-adenosylmethionine:tRNA
                     ribosyltransferase-isomerase"
                     /protein_id="HZU51913.1"
                     /translation="DQATADGLNAARCSGGRVIAVGTTSLRLLESAASEDGVIRAFEG
                     DTSIFITPGYRFKAVDGLITNFHLPRSTLFMLVSALMGLDVMKSAYDHAIEAHYRFYS
                     YGDASLLLPG"
BASE COUNT          675 a          991 c          973 g          671 t
ORIGIN      
        1 gccggcggtg atcgaacgtt ctccgatcgt cgaggacatc agcaacgact ggaacgggcc
       61 tctgccatcg ttcctttcgg tgagtgccgc ctagttacaa ggctgacact ggaaagcgcc
      121 actaggcgtc cctagctcgc accggcagcg aaagggacct cccgaatgaa cgactacgtg
      181 ccgcctaaag tctggaagtg ggaacagccg agcggcgggc aattcgccaa tatcaatcgt
      241 cctatcgccg gttccaccca cgagaaggaa cttccggtcg gcaagcaccc gttccagctc
      301 tattcactgg caaccccgaa tggacagaag gtctcgatca tgttggagga gcttctgcaa
      361 aagggccatc aggatgccga atatgatgcc tggcccattc gcatcggcga aggggatcag
      421 ttcggaagcg ggtttgtcgc gataaatccg aatagcaaga tcccggcgct cgtcgaccgc
      481 agcgggtcac cgcccgtgcg catattcgaa tcgggcgcga tcctcatgta cctcgccgag
      541 aaattcgacg aattccttcc tcgctcgggt gcgaaacgcg ccgaaacgct ttcgtggctt
      601 ttttggcaaa tgggcagcgc gcccttcctt ggcggcggtt tcggccactt cttctcctat
      661 gcgccgacga agatcgaata tgcgatcaat cgctacgcga tggaggcgaa gcgccagctc
      721 gacgttctca acaagaggct cgctgaaacg gaatatgttg ccggtccaga ttacacgatt
      781 gccgacatcg cgatctggcc ctggtatggc ggcgtcgcac ttggtcgcac ctaccacggc
      841 gcggacgagt tcttgggagc gcatgaatat gaacacctca tgcgctgggc acgtgcgatc
      901 gattcgcggc cagccgtgaa gcgcggtcgg atcgtcaaca aactgacagg ggatccatcg
      961 gaacagctcc atgagcgcca cgacgcgagc gactttgcgt tgaggaccga ggacaagctc
     1021 cagccagtcg cttaacgaag gcgcaagaga cgaaaaccga ccaggacacc tttgcgtatc
     1081 ccgcaggtgt tactcgcgct ggcacttgtg acttggcgcg cgtcattcga cgttcgtgga
     1141 atcgatgctt gcgcgcttca gggctgcgct ggcgtctttt gtgattcgag cacagcggcg
     1201 ttgcttgcga gactgtaaag ataggcgcga cgttcgtctg agcccgcctt cagtttgccg
     1261 agccggtgcc gctgctcgct ggtcagcgtg aacttcgaat agccacgttg cgcgaggcat
     1321 tgcgccgtcg ttgcttcgag tgtcttctta atgtctcggt agcgaaggtc cggacgagcg
     1381 ctgtcgatga tatgctgttg gctcgccgca tattcgccca tctgatccgc ttcactggct
     1441 cccgccgcac cggtgcccgg agctcccgtg ccgggaccga atgtactttg aagattatcg
     1501 agctgtcgcg atgccttcac caactctttg gcatcctgcg tctgcgatac gtcggtgtaa
     1561 tggcctttga ggccgcactc gagtgcgtcc tcgcgatact gagcaagcgt gatcccggct
     1621 tttccccagc tttcctgcgg tgcggaagcg gcgaaagcgg gagtcactat cagcgctgat
     1681 agtgagacgg cgaacaagcg acgcatcgat cgtctccttc gataacaagg actacaatta
     1741 caatatcagc gtgcgcgacg gtagcgctcg agaaagctcg tcgcgaacat tgcaaggttc
     1801 ctcttgagga ttgcctcgcg caatccttcc atcatccgtt gatagaacca caagttatgt
     1861 tccgtcatga gcatcgcgcc aagtatctcg cccgccttga cgagatgatg aacataagca
     1921 cggctaaagc tcgtacacgc aggacatcga cagccctgct ctattggatc gcgatcttcg
     1981 gcgaaacggg cattacggat gttgatcggc ccgtcggcgg taaatgcttg tccagtcctc
     2041 ccggaacggg tgggaaggac gcaatcgaac atgtcgatgc cccttctcac cgcttcgacg
     2101 atgtcgtcgg gtttgccaac gcccatcagg tagcgcggtt tgtcggcagg cagcatgccc
     2161 actgcgaagt caagacagcc gagcatcgcc tcctggccct cgccgacggc gaggccgccg
     2221 accgcgtaac cgtcaaatcc gatgtcgatc agggcctcgg cggaaccgcg ccgaagatct
     2281 tgatcgagcg ccccttgctg aattccgaaa atggcggcgc gctctgcatg ggcagcgccg
     2341 cggtcgaact catcgcgcga gcgcctcgcc caacggatgg accgatccat tgcctcgcgc
     2401 tgcgcctccg gcatcgacgt tgtcgggaca agctggtcga attgcatgag gatgtcgctg
     2461 tcgaggagcc gctggatctc gatcgagcgc tcaggcgaaa gcatgtgccg cgagccatcg
     2521 agatggcttg caaaggaaac accctcttcg ctgacctttg tcaggtcaga gaggctcatg
     2581 acctgatagc cgccgctgtc ggtgaggatg ggacgatccc aatgcatgaa ccggtgcagc
     2641 ccgccaagcc ctgcaacgcg ctcggcaccc ggtcggagca tgaggtggta ggtattgcca
     2701 aggatgatgt ctgcgcccga tgctcgtacc gcttccggcc gcattgcctt gacggtagca
     2761 gccgtaccga ccggcatgaa tgcaggtgtt cggatttcac ctcggttcat gacgatcgag
     2821 cccgtgcgtc cggcgccgtc cgtcgcgtcg atcgaaaagg aaaagcggct cacaaactcg
     2881 ccttgccaag cgctacaggg caagtcgagc aacttggctt acctcccgcg catttgcgtc
     2941 gacatcgagt acttatcaac gtcgacgctc ctagcccggg aggagcaggc tcgcgtctcc
     3001 ataggaatag aagcggtaat gcgcttcgat cgcgtggtca taggctgact tcatgacgtc
     3061 gagccccatc agcgcactca ccagcatgaa caaagttgaa cgcggcaggt gaaaattggt
     3121 gattagcccg tcgacggcct tgaagcggta tccaggagta atgaatatcg atgtgtcgcc
     3181 ttcaaaggcg cgtatcacgc cgtcctcgct tgcggcactt tcgagaagac gcaggctcgt
     3241 cgttccgacg gcaatcactc gtccgcccga acaacgtgcc gcgttgaggc catcagccgt
     3301 cgcttggtct
//
LOCUS       DASRBJ010000310         7548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_644574,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000310 DASRBJ010000000
VERSION     DASRBJ010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7548
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_644574"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..993
                     /locus_tag="VE968_08595"
     CDS             <1..993
                     /locus_tag="VE968_08595"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HZU51914.1"
                     /translation="EDGAQVTQGQMLAVLSNAELQLSTLEKQAEVEQQLNNMRSQELA
                     LTESRNNNLRDLNQAQTDLAKAKRQYDLYKPLAASGFVAMKAFNDAKDDMSYQANRLR
                     ILKQSVAQSEALQTSQLGQLRSAAASLNSSMGIARSNLSQLSIRAPVTGELSGFDIQL
                     GQSLQQGERIGQIDSAGGNKLQADVDEYYLGRVHVGQTATADADGHTYQLKVAKVYPQ
                     VRNGQFQIDLVFVGEAPGSVQRGQTLQTKLTLGDSTKALLIPNGAFFNDTGGNWVFVV
                     DRSGTGATRRQVQLGRRNADFIEVLSGLSPGERVITSSYSGLTDKARLTFSSGE"
     gene            1008..1688
                     /locus_tag="VE968_08600"
     CDS             1008..1688
                     /locus_tag="VE968_08600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HZU51915.1"
                     /translation="MLTMTGLTKTYRTDTVETTALDSVDLDIADGEFVAIMGPSGCGK
                     STLLNVMGMLDSPSGGSYVFNGHEVAGLGEAQLAETRKSNIGFIFQSFNLVDELTVRE
                     NVELALLYHNFPASERKARVERVLDKVGIAHRAKHRPTQLSGGQQQRVAVARALVGEP
                     KLILADEPTGNLDTAHGEEVMRMLRQLNQEGATIVMVTHSPAHADFASRVVNMLDGRI
                     LQERRRAA"
     gene            1729..4221
                     /locus_tag="VE968_08605"
     CDS             1729..4221
                     /locus_tag="VE968_08605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017501381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HZU51916.1"
                     /translation="MWRNYWTVAVRALAKNRTYSIINIAGLAIGMAACVMILLYIRYE
                     QSYDKWIPDVANTYELQAWYPHPHDSEPMFLQMTSYTTKDHVLKDFPQVVGGVYALSS
                     EPVIMKDGQASPSKDYLITDGDFLKVVNLPLVAGSTLPAAQTAVLTRTEAIKRFGTDQ
                     VVGRTLSAISKGVTRDFKITGVLKDVPKNSSLKINAILRMDFNSFFAKEPDFLTCWSC
                     QSGWVFLKLKPGSDVKEMEAQMPSWEKRNIPDQPNGNVRYNAGDEEDWHFINLADVHL
                     GKAQRGAMTPGNDRRSIATFAIIALLILAMAVVNFTNLATARAAQRAREVALRKVLGA
                     TRTQLIVQFVAESILISGVAMLLALALVELLVRPFAAFLDADLALDYFGSNGILLPAI
                     ALTLCVGIISGLYPAFFLSRFQPAQVLKANRSAAETPGSGRLRAALVIGQFAVSIGLI
                     ICTAVIYGQTVYARSVDPGYQRDHLLQVDNMNRYQLLAKSEAIVEQMKRIPGVIAVGL
                     TDIGVATDNNSNAGLIPLGSNRSVTIGTYNVSAGFKDAMGLKLIAGRWFDPNREMDDS
                     TLGFPLDKARETALARRGINIVLNEYAVRKLGFKSPQDAIGKAVTSELFEPGTGQVTI
                     NIIGVVGDTRFRSVRTPIDPIMFENVKSGPSWMMIRYRGDPVTVEAAVERQWKAITND
                     VPFEAKFSEDIIRELYKAEDSRAKIFAAFSLLAVIIGCLGLFGLAAFTAERRTKEIGI
                     RKVLGARTRDIVRLLVWQFSRPVMIANVIAWPIAWWMMRDWLNGFDQRIALTPIPFLI
                     AAAIALGIAVATVVGHAVKVARANPIHALRYE"
     gene            complement(4235..4462)
                     /locus_tag="VE968_08610"
     CDS             complement(4235..4462)
                     /locus_tag="VE968_08610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51917.1"
                     /translation="MSAAASHSWRCTHGRSGARIIQVTERGPELPPEEVAGGLLVQTI
                     RLACTGAAKTGVIADAARKIALATIITRLAR"
     gene            complement(4459..6201)
                     /locus_tag="VE968_08615"
     CDS             complement(4459..6201)
                     /locus_tag="VE968_08615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006953627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HZU51918.1"
                     /translation="MATPSTTRHPHRLSDYTADYRMLVLAAMATVAGTGGALSAYALL
                     KLIALATNLFWFGKPSFANAAITSRTPLLVLLIPIIGGMIVGLIARFGSEKIRGHGIP
                     EAIETILFGDSKLSLKVAVLKPVSSAVSIGSGGPFGAEGPIIMTGGAIGSLFAQLFNL
                     SAAERKTLLVAGATAGMTGIFGTPFASIMLAVELLLFEWKPRSFVPVVTAVLVSLAWR
                     PLLVASGPLFPFPAPTPAGIEPVAIAAGIGLLTGLLAALMSFLLYRIEDGFHALPVHW
                     MWWPAIGAVIVGVGGLFDMRVLGAGYDSIAALLNDNLALKAVILLLIVKAIVWLVALG
                     SGTSGGILAPLLILGGCTGYLIGQFLPGDAGFWAMIGMAGVMSGTMRAPMTGALFAAE
                     LTSHLSALPETIAAGTAAHAISVLVMKRSILTEKIARRGRHILREYSVDALEFLQAGQ
                     LMTHDPATLAGTMRLDAVVRFFAEEATHRSYPVVDPRGHLLGLVSRTDALEWKISQRT
                     DGTLAEAMSDASTQFAFPQTPCGDVADMMVESGIGRMPIVDPSTRKVVGIISRQDLLK
                     IRSRQKHGETRSTA"
     gene            6482..7261
                     /locus_tag="VE968_08620"
     CDS             6482..7261
                     /locus_tag="VE968_08620"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HZU51919.1"
                     /translation="MGKGPAREVNRRELLALGAVLGTTAAAEALSRHDGMLGGPSRTF
                     TNALPWDDGLTDAPDAGTAGGWRYLNTAEVGFLTAAVDRLIPPDPTGPSASEAGVVVF
                     LDRQLAGDYGNGAHFYLEGPWGKGTESQGYQSRFTPAQFYRHAIEAIGEAVSRSENGK
                     SFKDLPATKQDELLKQMESGDLKLNGPISSKSFFTMFLQNVLEGYFSDPIYGGNKNGA
                     AWAMIGFPGAHYDYSEWVTAYNKPVPVQPVGLRGRAAWRRG"
     gene            7265..>7548
                     /locus_tag="VE968_08625"
     CDS             7265..>7548
                     /locus_tag="VE968_08625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51920.1"
                     /translation="MAKQLAKVDVVLVGFGWTGAILAQQLCDAGLTVLALERAAPRTT
                     PVDWATTFDQDELRYMWRHHLFQNVRYSTLTFRNNVNQTALPMRRLGSFLP"
BASE COUNT         1587 a         2225 c         2268 g         1468 t
ORIGIN      
        1 gaagacggtg cgcaggtcac tcaggggcaa atgcttgcgg ttttgtccaa tgcggagctg
       61 cagctctcga cgctcgaaaa gcaagccgag gtcgagcagc agctcaacaa catgcgcagc
      121 caggaactcg cgcttacgga aagccgcaac aacaatcttc gcgatctcaa ccaggcgcaa
      181 acggatctcg ccaaggcgaa gcgacagtac gacctctaca agccgctcgc agcaagtggc
      241 ttcgttgcga tgaaggcctt caacgacgcg aaggacgaca tgagttatca ggccaatcgc
      301 ctccgcatcc tcaagcagag cgtcgctcaa tccgaggcgc ttcagacgag ccagctcggg
      361 caacttcgct ccgccgctgc atcgctcaac agcagcatgg ggattgcgcg aagcaacctt
      421 agccagctca gcattcgtgc accggtgacg ggcgaactta gcggcttcga cattcagctt
      481 ggccagtcgc tccagcaggg tgaacgtatt gggcagatcg atagcgcagg cggcaacaag
      541 ctgcaggccg atgtcgatga atattatctt ggtcgcgtcc atgtcgggca gaccgcgacc
      601 gccgatgccg acggccatac ttaccagttg aaggtcgcca aggtttatcc gcaggtccgc
      661 aatggccagt tccagatcga tctcgtcttc gttggggagg cgccaggctc cgttcaacgc
      721 ggtcagacgc tgcaaaccaa gcttacgctc ggcgattcga cgaaggcact gctcattccc
      781 aatggcgcgt ttttcaatga taccggcggc aactgggtgt tcgttgtcga ccggagcggc
      841 accggcgcga cacggcgcca agtccagctc ggccggcgca acgccgattt tatcgaggtg
      901 ctgagcggcc tttcgccggg cgagcgcgtc atcacctcat cgtacagcgg gcttactgac
      961 aaggcccgcc tcaccttcag ttccggcgag taagaaagga aagactcgtg ctgacaatga
     1021 ccggcctcac caagacctat cggaccgaca ccgtggagac gactgcgctc gacagcgtcg
     1081 atctcgacat tgccgatggc gagtttgtcg caatcatggg tccgtcggga tgcggcaaat
     1141 cgacgcttct gaacgtcatg ggaatgctcg acagtccgtc tggcggttcc tacgtcttca
     1201 atgggcacga ggttgcgggt ctgggagagg cgcagctcgc cgaaacgcga aagagcaaca
     1261 tcggattcat attccagagc ttcaatctgg tcgacgagct gacggttcgc gagaatgtcg
     1321 agcttgcgct cctctaccac aatttccccg cctcggagcg caaggcgcga gtcgagcgcg
     1381 tgctcgacaa ggtggggatt gcccatcgag caaagcatcg cccgacccag ctttccggtg
     1441 gtcaacagca acgcgtcgcc gttgcgcgag cgctggtagg ggaacccaag ctcatccttg
     1501 ccgacgagcc taccggcaac cttgacacag cgcacggcga agaagtgatg cgcatgcttc
     1561 gacagcttaa ccaggagggc gccacgatcg tgatggtgac gcactctcca gcgcatgccg
     1621 atttcgcaag ccgcgtcgtg aacatgcttg acgggcgcat tctgcaggag cggcgtcgcg
     1681 cggcctgaag agctcgaagg cgtgcaacaa ttgcaaagga cgctcaacat gtggcggaac
     1741 tactggacgg ttgcagttcg ggcgcttgcc aagaaccgga cctattcgat catcaacatc
     1801 gccggactag caatcggcat ggccgcatgc gtcatgatcc tactctatat tcgatacgag
     1861 cagagctacg acaaatggat tccggacgtc gcgaacacct acgagctcca ggcctggtat
     1921 ccacatccgc acgacagcga gccgatgttc ctgcagatga cgtcgtacac gacgaaggac
     1981 cacgtcctta aggattttcc gcaggtagtc ggcggcgtct atgcgctctc ctcggagccg
     2041 gtgatcatga aggatgggca agcatcgccg agcaaggact atctgatcac cgacggcgat
     2101 ttcctcaaag tcgtcaactt gccccttgtt gcaggatcga cgttgcccgc cgctcagacg
     2161 gcagtcctta cccgtaccga ggcaataaag cgcttcggca cggaccaggt tgtcggaaga
     2221 acgctgagcg ccatctccaa gggagtcact cgcgacttca agataacggg tgtgctgaag
     2281 gatgttccaa agaactccag cctcaagatc aacgcgatcc tgcgaatgga tttcaacagc
     2341 ttctttgcca aggaaccgga tttcctgacc tgctggagct gtcaatccgg ctgggttttt
     2401 ctcaagctga agcccggttc cgacgtcaag gaaatggaag cgcagatgcc gtcgtgggag
     2461 aagcgcaaca tccccgatca gcccaatgga aacgtcaggt acaatgccgg tgacgaagaa
     2521 gactggcatt tcatcaatct agccgatgtc catctcggca aggcgcagcg cggggcaatg
     2581 acgccgggga acgaccgccg atcgattgca accttcgcca tcattgcgct cctcattctc
     2641 gcgatggcgg tcgtgaattt caccaacctc gcgactgcgc gcgccgcaca gcgtgcccgc
     2701 gaagtcgcct tgcggaaggt gcttggcgca acgcgcacgc agcttatcgt tcagttcgtt
     2761 gccgaatcca tcctcatatc cggcgtcgca atgctgcttg ctctcgcgct tgtcgaattg
     2821 ctggttcgac catttgccgc tttcttggac gcagacctcg cgctcgatta cttcggttcg
     2881 aacggcatcc ttttgcccgc catcgccctg acgttgtgcg ttggaatcat tagcggactt
     2941 tacccggcgt tcttcctgtc ccgcttccag ccggcgcagg ttctgaaggc gaaccggtcc
     3001 gcggccgaga ctcccgggtc cgggcggctc cgagccgctc tcgtcatcgg ccagtttgcc
     3061 gtctcgatcg gactaatcat ctgcacggca gtaatctacg ggcagacagt ctacgcacgc
     3121 tcggtcgacc ccggatatca gagagaccat ctcctccagg tcgacaacat gaatcgctat
     3181 cagctgctcg cgaagagcga agcgatcgtc gagcagatga agagaattcc tggagtgatt
     3241 gccgttgggc taaccgacat cggcgttgcg acggacaaca acagcaatgc gggtctcatt
     3301 ccgcttggaa gcaatcggtc ggtgacgatc ggtacgtata atgtaagcgc gggcttcaag
     3361 gatgccatgg ggctgaagct gatcgccggt cgatggttcg atccgaaccg cgaaatggat
     3421 gattcgacgc tcggctttcc gctcgacaag gcgcgcgaga ccgcactcgc acgtcgcggg
     3481 ataaatatcg ttcttaacga atatgccgtg cggaaacttg gcttcaaatc gccgcaggat
     3541 gcgattggca aagcggttac cagtgagttg ttcgaacctg gaactggtca ggtcacgatc
     3601 aacatcatcg gcgtcgtcgg cgacactcgc ttccgctcgg tccggacgcc gatcgacccg
     3661 atcatgttcg agaatgtaaa gagtggcccg tcatggatga tgatccgtta tcgcggcgat
     3721 ccagtgacgg tcgaagctgc cgttgaacgg cagtggaaag cgatcaccaa cgatgttccg
     3781 ttcgaagcaa agttcagcga ggacatcatt cgtgaattgt acaaagccga agattcgcgc
     3841 gccaagatct ttgctgcttt ctcgctactc gccgtcatta ttggctgcct cggcctcttc
     3901 ggtcttgcgg ccttcactgc agagcggcga accaaggaga ttggtattcg aaaggttctc
     3961 ggtgcgagga cgcgcgatat tgtccgcctg ctcgtgtggc agttcagccg accggtgatg
     4021 atcgccaatg tgatcgcctg gcccatcgcc tggtggatga tgcgcgactg gctcaacggc
     4081 tttgaccagc gcattgcact cactccaatc ccattcctca tcgccgcggc tattgctctt
     4141 ggcattgccg tcgcgactgt ggttggccat gccgtgaagg ttgcaagagc caatccgatt
     4201 cacgcactga gatatgaatg aaagctcgat cggatcatcg agcaaggcgc gtgatgatcg
     4261 ttgctagcgc gattttccta gctgcgtctg caatgactcc cgttttggct gcgccggtgc
     4321 acgccaagcg aattgtttgg accaaaaggc cgccggcaac ttcttctggt ggaagttcgg
     4381 gacctctttc cgtcacctgg atgatccgcg cgccgctgcg gccatgagtg cagcgccagg
     4441 agtgcgatgc agcagcgctc acgcggtgct gcgcgtttca ccatgcttct ggcgcgagcg
     4501 gatctttaag aggtcctgcc tggaaatgat cccgaccacc ttgcgggtcg aaggatcaac
     4561 gatcggcatt cggccgattc cggactccac catcatgtcc gcgacgtcgc cgcacggcgt
     4621 ctgcggaaat gcaaactgcg tcgaagcgtc cgacatcgct tcggcaagtg tcccgtccgt
     4681 tcgctgactg atcttccatt cgagcgcgtc ggttcgcgag acgagaccaa gaaggtgccc
     4741 gcgagggtcg acgaccggat aggaacgatg cgttgcttct tcggcgaaga aacgaacgac
     4801 agcatcgagc cgcatggtcc cggcgagggt tgcggggtca tgggtcatca gctggccggc
     4861 ctgcaggaac tcgagcgcgt caaccgaata ttcgcgaagg atgtgcctcc ctcgccgcgc
     4921 gattttctcg gtgaggatcg accgtttcat gacgaggacg ctgattgcat gcgcggccgt
     4981 tcccgcggcg atcgtttcgg gaagtgccga cagatggctc gtcagttcgg cggcaaacag
     5041 cgcgccggtc atcggcgcgc gcatcgtccc gctcattact cctgccattc caatcattgc
     5101 ccagaaaccg gcgtcaccag ggaggaactg gccgatcaaa tagccggtgc agccgccaag
     5161 gatcagaagc ggcgcaagaa tgcccccgga agttcccgat ccaagcgcaa ccagccacac
     5221 gattgccttc acaattagca ggagaatgac cgctttgagg gcgagattgt cattgagcag
     5281 agcagcgata ctatcgtagc ccgcgccgag aacgcgcatg tcaaaaagac cgcctactcc
     5341 aacgatgaca gcgccgattg ccggccacca catccagtgg acgggaagcg cgtgaaaccc
     5401 atcctcaatg cgatagagca gaaaggacat gagcgcggca agtaggccgg ttagaagtcc
     5461 gatgccggcg gcgatggcga ccggttcaat ccccgcgggg gtcggggcgg ggaaggggaa
     5521 aagcggtccc gaggcaacaa gcagcggtcg ccacgcgagc gacacgagaa cggcggtgac
     5581 gacgggcacg aagcttcgcg gcttccattc aaatagaaga agctcgacgg caagcatgat
     5641 cgaggcgaat ggtgttccga aaatccccgt catgccggct gtagccccgg cgacgagcag
     5701 cgtcttgcgc tccgcggcgc tgaggttgaa cagttgagca aacaaggatc cgatcgcgcc
     5761 gccggtcatg atgatcggcc cttcggcgcc aaatgggccg ccgcttccaa tcgaaacggc
     5821 ggacgaaacc ggctttagaa cagcaacctt tagcgacagc ttgctgtccc cgaagaggat
     5881 tgtttcgata gcctccggga ttccgtggcc tcggattttc tccgatccga agcgcgcaat
     5941 caggccgacg atcatacctc ctattatcgg aatgagcaga accaggagtg gcgttcgact
     6001 tgtgatcgct gcatttgcga acgacggctt gccgaaccag aataaattgg tggcaagcgc
     6061 gatgagcttc aggagcgcgt aagcgcttag tgcgccgcca gttcccgcga cggtcgccat
     6121 cgccgcaaga acgagcatcc ggtagtcggc ggtataatcc gaaagtcgat gagggtggcg
     6181 ggtcgtggag ggtgtagcca ttgcgggcgc ttggcgcgaa tgcgccgtac aatgcaagcg
     6241 cgggcctaag gcagcttggg tgcgtcgaac ggcgatgttt attgctaacc ttctgtaggt
     6301 cggctgcttt gtaccgacgc atgcggctgg tccggggaca gctttcgccc ctttcttgac
     6361 aaagatcagt ttcgcaacgc cggcggaacg aggtaacagc gctatcgttg ctataaccgt
     6421 cgttttcccg acaaacacct cgcgcacggc gcgccggggc gtcgcggcga ccggaggatc
     6481 gatggggaaa ggtccagcac gcgaggtcaa tcggcgcgag ttgctcgctc tgggcgcggt
     6541 cctcggcaca acggcagcag cggaagcgct gtcgcgtcac gatggcatgc tcggcggccc
     6601 aagtcgcacg ttcacgaatg cgctgccttg ggacgatggc ctcacggatg cgcccgatgc
     6661 gggaacggcc ggcggctggc gctacctcaa caccgctgaa gtcggatttc taaccgcggc
     6721 cgtcgatcgg ctcataccgc ctgatccgac gggtcccagt gcctccgaag cgggggtggt
     6781 cgtgtttctc gatcggcagc ttgccggtga ttacggcaat ggcgcgcatt tctatcttga
     6841 agggccctgg ggaaagggga cggagagtca gggctaccag agtcgattca ctccggcgca
     6901 attttatcgg cacgcaatcg aggcgatcgg tgaggccgtc agccggagcg aaaatggcaa
     6961 gtccttcaag gatctacccg cgacgaaaca agacgagctg ctgaagcaga tggaatcggg
     7021 cgacctcaag ctcaacgggc cgataagctc gaaatccttt ttcacgatgt tcctgcagaa
     7081 cgttctcgaa ggctattttt ccgatccaat ttacggcggc aacaaaaacg gcgcggcctg
     7141 ggcaatgatt ggttttcccg gcgcgcatta cgattattcc gagtgggtta ctgcctataa
     7201 caagcccgtt ccggtccagc ccgtgggctt gcgcggccgt gccgcttggc ggcgaggctg
     7261 aacggtggcc aagcagttgg caaaggtcga tgtcgtgcta gtcggcttcg gctggaccgg
     7321 cgctatcctc gcgcaacaat tgtgcgatgc cggtctcacg gtgcttgcgc tcgaacgtgc
     7381 cgcgccgcgg acgacgccgg tcgactgggc aacgaccttc gatcaggacg aactgcgtta
     7441 catgtggcgt caccacctgt ttcagaatgt gcgctattcg acgctcacgt tccgaaacaa
     7501 tgtcaaccag acggcactgc caatgcgccg attgggctcg ttcctccc
//
LOCUS       DASRBJ010000311         8292 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_751109,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000311 DASRBJ010000000
VERSION     DASRBJ010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8292
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_751109"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(36..599)
                     /locus_tag="VE968_08630"
     CDS             complement(36..599)
                     /locus_tag="VE968_08630"
                     /inference="COORDINATES: protein motif:HMM:NF022441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2807 domain-containing protein"
                     /protein_id="HZU51921.1"
                     /translation="MPSTVPLFAAALLVSVPVLATELVPVENFRSVELRGGGMVEVVP
                     GPVEQVTIVEGSSRFTRMHVEDGSRLVINTCDERCPANYRLRVQIESPRVPDLAVDAG
                     GGMFAERGFAPQSHLNAAVNGGGRIDVRSVDAASVAAAVNGGGELLVRARNSLSAAVN
                     GGGHVRYAGNPVTSVAIHGGGAVTRLN"
     gene            704..1444
                     /locus_tag="VE968_08635"
     CDS             704..1444
                     /locus_tag="VE968_08635"
                     /inference="COORDINATES: protein motif:HMM:NF012273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HZU51922.1"
                     /translation="MITIIGSYVSPYVRKVLACMNLKGIAYEVDPITPFFGNDEFERL
                     SPLRRIPVLVEGDFAISDSSVICNYLDEAYPDSPLLPADCRDRARARWLEEFADTRLG
                     DVFIWSLFYQKLVRPLVWNEQPDEQRIAKAINKDIPQALDYLEGELPSDGFLFGNIGV
                     ADIALASFFRNAAYAGFTVDAERWPRTAGAVERTLNHPCMASLLPLEDVQRNASIKGR
                     RQALLDAGASLTSTTLGVREPRHGMMQL"
     gene            complement(1441..1944)
                     /locus_tag="VE968_08640"
     CDS             complement(1441..1944)
                     /locus_tag="VE968_08640"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZU51923.1"
                     /translation="MLNILIVEDDTQLAVTLKYLVEDNPRYRVVAMAEDADSAILAAR
                     ECEPDLVLLDLRLANGTTGFSVAVRLNDLCVPCLFVSGKAPPFPMPDLAIGCLMKPFT
                     AEDVHRSLAAAEDLLRGREALRTKIPANLILYEPADTARYVEPGFIPSRPSLRTRLEH
                     WISSHHH"
     gene            complement(2137..2883)
                     /locus_tag="VE968_08645"
     CDS             complement(2137..2883)
                     /locus_tag="VE968_08645"
                     /inference="COORDINATES: protein motif:HMM:NF019128.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall hydrolase"
                     /protein_id="HZU51924.1"
                     /translation="MVKLIGGRAASAVIGLFMLGLGSSATAQDMSALGNVAAVVKSVE
                     TDNSAKPLGTPVSQAASLVRPAIATVTTAVATPNGAIMQAKPAQSVTVKLSQSIAQEA
                     AWLYKGGWPLYALVEKFATSAPLDEETNCLATAVYFEARGESLEGQLAVARVVMNRAS
                     SGKYPSDWCGVVKQPAQFSFVRHGEFPYVDTASAAWQKAEAVAELAASNVVPSVSSDV
                     LWYHADYVAPAWRRSLQEVQQIGAHIFYRA"
     gene            3216..3617
                     /locus_tag="VE968_08650"
     CDS             3216..3617
                     /locus_tag="VE968_08650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EVE domain-containing protein"
                     /protein_id="HZU51925.1"
                     /translation="MAHWLMKSEPESYSWADLVRDGGTEWDGVRNNAARLHLKAMRKG
                     DEAFFYHSMSDKAVVGIMRISREAQPDPKDAAWVSVRVEPVREIGHVTLAMIKAEPRL
                     AAMELLRQSRLSVAPVRDEEWTIVLELAAGR"
     gene            complement(3699..4970)
                     /locus_tag="VE968_08655"
     CDS             complement(3699..4970)
                     /locus_tag="VE968_08655"
                     /inference="COORDINATES: protein motif:HMM:NF013254.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51926.1"
                     /translation="MRILGVSETCDLGSMYLRLIAEGHEVRVSISEPLAAGTMSGMVP
                     RAADWRAELPWVKEAGAAGIILFEAVGFGRVQDELRADGFNVIGGSAFGDLLEENRAF
                     AQDLLRRSGLRVARAKEFTNIASALEDLADRPRRCVFKRSASAADTFVGTMDDGRDIA
                     ALLRSMAPPEGQSFVLMDHVDGIETGVGAYFNGECFLAPACLDWEHKRFFAGDMGELT
                     GEMGTVATFERSDKLFATVLRPLEPVLRDVGHVGWVNLNTIINSEAVSPLEFTCRFGY
                     PGFAVLEPLQDLGWGELFGAIIGKERTSFPAASGFSLCIVLSTPPFPYSRKEVAAPVG
                     IPVVVDAVEPAHLHWGEVGQEKGETVTSGLYGWTAVVTGTGPSVRDAQVAAYDRARRV
                     HTPNLRYRLDIGDKLIAHGLSLLDEWGWLGS"
     gene            5026..5919
                     /locus_tag="VE968_08660"
     CDS             5026..5919
                     /locus_tag="VE968_08660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HZU51927.1"
                     /translation="MATILKSAAYGTNLEALSDGVQQQLARWNRERLAPRLPVGDWRL
                     AMDRDEANLGLEAQFLEALRDEVAEEASAAPSQTDQFIQWFEGLRESGPGQNDPLFPW
                     LAGRATLDQMRWYLRQEAAGEAGFEDLTAYVQVKLPQRIKLELARNYWDEMGRGNAKG
                     MHGPMLERLVHHLQLEPTIDRTVWESLALANAMTAMATRRDYAWHALGALGVIELTAP
                     ARSAAVAAGLKRLGVPAKARSYFDLHASLDIKHSLAWNAEAIAPAIAEDPRRARAIAE
                     GALIRLTCGERCFERYRRELW"
     gene            5916..6824
                     /locus_tag="VE968_08665"
     CDS             5916..6824
                     /locus_tag="VE968_08665"
                     /inference="COORDINATES: protein motif:HMM:NF017026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HZU51928.1"
                     /translation="MTCEPLLDLLRLLKERDYDFTAVTPATHARVVARPCERPTTRDI
                     FGWNRSFEPADLAPELLKCLEHSGTLEQCDGRLRSKVRVARLGGDLFLHSSFPTIDSD
                     AVFFGPDTYRFARFVTDSIVHMELDPASVVDMGAGSAAGAVAAARMLPSARLTCVDVN
                     PRALELAAINLRAAGIEAELVCSSKLPDGADLVIANPPYMMDSEQRAYRDGGGLLGGE
                     VALDWARNALSAMSATGTMLLYSGASVVDGVAPLIGALQRACTSARSQFDFEEIDPDV
                     FGEELDQRAYGAVERIEVIGATIRRA"
     gene            complement(6827..>8292)
                     /locus_tag="VE968_08670"
     CDS             complement(6827..>8292)
                     /locus_tag="VE968_08670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013832014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HZU51929.1"
                     /translation="LKPIVVVNKIDRPDARAAEVLDEVFELFINLDASDEQLDFPTLY
                     ASGRAGYAGREDSVRDGDLTPLFETIVSHVPAPKLDASGEFKMLATLLDRDPFLGRIL
                     TGRVESGRISVNDPIRAMDVNGNVVEDGRATKLFAFRGLERVPVDSADAGDIIAIAGV
                     IKATVSNTIGTPLMTEPLAAREIDPPTLSMTFAVNDSPFAGKDGDKVQSRVIRDRLLR
                     EAEGNVAIRVTETAGGEAYEVAGRGELQLGVLIETLRREGFELGISRPRVLFRDGPNG
                     REEPYETVVVDVDDEFSGTVIDKMAMRKAEMTDMRPSGGGKTRLTFSAPSRGLIGYHG
                     EFLSDTRGTGIMNRLFEKYGPYKGPIAGRQNGVLISMEQGAAVAYALNALEDRGVLFV
                     SPGEMLYEGMVIGENAKPQDLEVNPLKSKQLTNFRASGKDEGIRLTPPRRMSLEQAIA
                     YIQDDELVEVTPKAIRIRKRYLDPHERKREARKLEAA"
BASE COUNT         1638 a         2572 c         2463 g         1619 t
ORIGIN      
        1 gcacttcacg cgcgatcgcg tcgagatcat cccttctagt tgaggcgagt gactgcgcct
       61 ccgccatgaa tggcgacgct cgtcacagga tttcccgcgt agcggacgtg accaccgcca
      121 ttgaccgccg ccgaaagcga atttcgggcg cgaaccagga gttcgccgcc gccgttcacc
      181 gctgcagcaa cactggcggc gtcgactgag cgcacgtcga tccggccgcc gccgttcacc
      241 gccgcgttaa ggtgtgactg tggagcaaag ccgcgctcgg cgaacattcc gccgccggcg
      301 tcgacggcga ggtccggcac gcgcggtgac tcgatttgaa cgcgtagccg gtagttcgcc
      361 ggacagcgtt cgtcgcatgt attgatgacg aggcggctgc catcttcaac atgcatgcgc
      421 gtgaagcggc tcgagccctc gacaatggtc acttgctcga ccggacccgg aaccacttcg
      481 accatgcctc cgccgcgaag ctcgacggac cggaaattct cgacgggcac cagttcggtt
      541 gcaagcactg gcacggaaac caacagggca gcggcaaaca gcggcacggt agaaggcatg
      601 gatgatcctt tctttccggt agaacgctac atctgtagcg ctacttttgc agcctgtcca
      661 gcccgcttgc agccggcggc cgaccgctgc atcctgctgc gccatgatca ccatcatcgg
      721 gagctacgtc agcccttacg tgcgcaaggt gcttgcgtgc atgaacctca agggcatcgc
      781 gtatgaggtc gatccgatta cgcccttctt cggaaacgac gaatttgagc gcttgagtcc
      841 gctgcgccga attccggtgc ttgttgaggg ggatttcgcg atcagcgatt cctcggtcat
      901 ctgcaattac ctcgacgagg cctatccgga ctcgccgcta cttccggccg attgccggga
      961 ccgcgcgcga gcgcgctggc tggaagagtt cgcggacacg cggcttggcg atgttttcat
     1021 ctggagtctt ttctaccaga agctcgttcg gcctcttgtc tggaacgagc agcccgacga
     1081 gcagcggatc gccaaggcga taaacaagga cattccccaa gcacttgatt accttgaagg
     1141 cgaacttcct tcagacggct ttctgttcgg gaatattggt gttgcggata tcgcgctcgc
     1201 aagtttcttc cgaaacgcag cctatgcggg tttcaccgtc gacgctgaac gctggccgcg
     1261 gactgcgggc gctgtcgagc gcacgcttaa tcacccgtgc atggcctcgt tgttgccgtt
     1321 agaggacgtg cagcgcaacg cgagtataaa gggccgacgg caggccctcc tcgatgctgg
     1381 cgcgtcgctg acctcgacca cccttggcgt tcgcgagccc cgtcacggaa tgatgcagct
     1441 ctagtgatgg tggctcgaaa tccagtgctc gagccgcgtt cgtagcgaag gcctcgatgg
     1501 aatgaacccc ggctccacat accttgccgt gtccgccggc tcataaagaa tcaaattcgc
     1561 cggaatcttc gtccggagag cctcgcgccc gcgcaacagg tcctccgcgg ctgcaagcga
     1621 tcgatgtacg tcttcagcgg taaacggctt catgagacat ccgatcgcaa gatcgggcat
     1681 tgggaatggc ggcgccttgc cgcttacaaa caagcagggg acacaaagat cattgagccg
     1741 caccgcgacc gagaagcccg ttgttccatt ggcgaggcgg agatcgagaa ggacgaggtc
     1801 cggctcgcac tcgcgcgccg ccaaaattgc actgtccgcg tcttcggcca ttgcgacgac
     1861 gcgataacgc ggattgtcct cgacaagata ttttagcgtg accgccaatt gcgtgtcatc
     1921 ttcgacgatg aggatgttga gcataaggcg accccccccg actcccggca ttttcaccag
     1981 gaagtttttc cgctcaatgc ttcgcgcgct ttgaattggc tgcgaatccc ccttgaacag
     2041 ggttatcgcc gagatggaca gccatcgcgc caaaacgaag aaggcgcccc gccggcattg
     2101 ctaccgggag cgcctcctct ttgattcgat ttccaatcag gcgcggtaga agatatgcgc
     2161 cccgatctgc tgcacctcct ggaggcttcg gcgccatgcc ggtgccacat agtcggcgtg
     2221 ataccaaagg acatccgagc tgacgctggg caccacgttt gatgcggcaa gctcagcaac
     2281 ggcctcggct ttttgccagg cggccgatgc cgtgtcgacg tacgggaact cgccgtgcct
     2341 cacgaaggag aactgggccg gctgctttac gacgccacac cagtccgatg gatatttgcc
     2401 cgaagatgcc cggttcatga cgacccgggc aacggcaagc tggccttcga ggctctcgcc
     2461 gcgcgcttcg aaataaactg ccgttgcaag gcaattggtc tcctcgtcga gaggcgcact
     2521 ggtcgcgaac ttctcaacaa gcgcataaag cggccaaccg cctttgtaga gccacgcggc
     2581 ttcctgggcg atcgactggc tcagtttgac cgtaaccgac tgcgcgggct tcgcctgcat
     2641 gatcgcgccg ttcggagttg caaccgcggt tgtcaccgtc gcgattgcgg gacgtaccag
     2701 cgacgccgcc tggctcaccg gtgttccaag aggtttcgcg ctattgtccg tttcgacgga
     2761 tttcaccacc gccgcgacgt tgccaagcgc gctcatgtcc tgcgcggtcg cgctcgagcc
     2821 tagcccaagc atgaacagac cgatcaccgc agacgcagcg cgcccgccga ttagcttcac
     2881 cactggtgta ttagccctta tgttggcggg ctatcccgcc ggagccgccc attgctgagc
     2941 gcttgtgtct ccagcgggag atggcccgtc ttgccggagc ctgggattga tccccgggct
     3001 cgccgctccc attcgctgca ccccagatat gttaactttc gaatggggcc aagatagatg
     3061 tcggcgagtt gtgcgactcg caggatagaa tccggaacat cttgaaatcg ggccgttttt
     3121 tggagttatc cacataagcg acggttcggt tgatcgacgg tttcgctcgg ctcgtcggcg
     3181 cgctatcgaa agcgtcccga aaggagacgg tttgcgtggc gcactggctg atgaaatccg
     3241 agcccgaaag ctattcctgg gccgacttgg tgcgggacgg aggcacggag tgggacggcg
     3301 ttcgcaacaa cgccgcgcgc ctccatctca aggccatgcg gaaaggggat gaagcatttt
     3361 tctaccacag catgtccgac aaggccgtcg tcggaatcat gcgaatttcg cgcgaagctc
     3421 agccggaccc caaagatgcc gcctgggttt ctgtccgggt cgaaccggtg cgggagattg
     3481 gccatgtcac gctcgcaatg atcaaggccg agccgcggct tgcggcgatg gagctcctcc
     3541 gccagtcgcg tctttcagtc gcgccagtcc gcgatgagga atggacaatc gtcctcgagc
     3601 tggccgccgg ccgctgagca aacgttcagc agaagcaccg tcgaagacgc cgccgggcca
     3661 cattgtcaga aagagaaaat cgagagacgc gccgtcgatc aggatccgag ccagccccat
     3721 tcgtcaagaa gcgacagacc atgggcaatg agcttgtcgc caatatcgag ccggtaccgg
     3781 aggtttggcg tgtgaacacg tcgcgcgcga tcatatgctg caacttgcgc atcgcgaaca
     3841 ctcggcccag tgccggtcac gacggcagtc catccataga gccccgaagt gaccgtctcg
     3901 cccttttctt gtccgacttc cccccagtgg agatgcgccg gttcgacggc gtcgacgacg
     3961 accggaatgc cgacgggggc tgcgacctct ttgcgcgaat aagggaaagg cggggttgaa
     4021 agaacgatac aaagggaaaa tccggatgct gccggaaagc tcgtcctctc tttgccaatg
     4081 atcgctccaa acagttcgcc ccaaccaagg tcctgtagtg gctccagaac ggcgaatcct
     4141 gggtagccaa agcggcaagt gaattcgagc ggcgagacag cttcactgtt gatgattgta
     4201 ttgagattga cccagccgac gtgtcccaca tcgcgaagta ccggctcgag gggacgaagc
     4261 accgttgcaa agagcttgtc cgagcgctcg aaggtagcaa ccgtccccat ctctccggtg
     4321 agctcgccca tgtcgcccgc gaaaaacctc ttgtgctccc agtcgaggca cgcgggcgcc
     4381 aggaagcatt cgccgttgaa ataggcaccg acgcccgtct cgatgccatc gacatgatcc
     4441 atgaggacga agctttggcc ctctggcggc gccatgcttc gaagcagcgc ggcgatgtcg
     4501 cggccgtcat ccatggtacc aacgaaagtg tcggctgccg atgcgctccg cttgaaaacg
     4561 cagcggcgtg gtcgatccgc aaggtcttcg agcgccgacg cgatgttcgt aaattccttg
     4621 gctctagcga cgcgcagccc cgatcggcga aggagatcct gcgcgaacgc gcgattctcc
     4681 tcgagcaaat cgccaaacgc acttccaccg atcacattaa atccgtcggc acgaagctcg
     4741 tcctggacgc gtccaaagcc gactgcctcg aatagaatga tccctgccgc tccggcttcc
     4801 ttcacccatg gcagctcggc tcgccaatcg gccgcccttg gaaccatgcc ggacatcgtt
     4861 cccgcggcaa gcggctcact tatcgagacg cgcacctcat gcccttcggc aatgagcctc
     4921 aggtacatcg agccgagatc gcaggtttca ctaacaccga gaatgcgcat gcgcgcgtca
     4981 taatcgctgg aaccctcgac tggacaggac agtttcgcag gtgaaatggc aacgatcctc
     5041 aaatcggccg cgtacgggac aaacctcgag gctctctccg atggggtgca gcaacagctt
     5101 gcgcgatgga accgcgaacg cctcgcgccg cgattacccg tcggtgactg gcgccttgcc
     5161 atggacaggg acgaggcgaa cctgggtctc gaagcgcaat ttctcgaggc gctgcgcgac
     5221 gaggtggcgg aggaagcttc ggcggcccct tcgcagaccg atcagttcat ccaatggttc
     5281 gagggactaa gggaaagcgg gcctgggcag aacgatccgc tgtttccgtg gcttgccggc
     5341 cgtgccacgc tcgaccagat gcgctggtac ctccgccagg aagcggcagg agaagccggt
     5401 ttcgaggact tgaccgctta tgttcaggtg aaactgccgc agcgcatcaa gcttgaactg
     5461 gcgcgcaact attgggacga aatgggccgc ggcaacgcca agggaatgca cggcccaatg
     5521 ctcgagcgcc tggttcacca tctgcagctc gagccaacca tcgatcgcac cgtttgggaa
     5581 agcctcgcgc ttgcgaacgc gatgaccgca atggcaacga ggcgcgacta cgcatggcat
     5641 gctcttggag cactgggcgt catcgaattg accgctcccg cgcgctccgc agcagtcgct
     5701 gccggcttga agcggcttgg agtaccagcc aaggcccgct cctatttcga tctccacgcg
     5761 agcctcgata tcaaacacag cctcgcatgg aacgcagagg cgatcgcgcc ggcgattgcc
     5821 gaagacccgc gtcgtgcacg agcaatcgcc gaaggcgcac tgatccgctt gacctgtggc
     5881 gaacgatgct ttgaacgata ccgccgcgaa ctgtggtgac gtgcgaaccg ctgcttgatc
     5941 ttctgcggtt gctcaaggaa cgtgactacg atttcaccgc cgtcactcct gcgacgcacg
     6001 cacgggtcgt cgctcggcca tgcgaacggc ccacgacccg cgacatcttc gggtggaacc
     6061 ggtcgttcga acctgctgat ctcgcccctg aattgctcaa gtgcctcgaa cattctggca
     6121 ctctcgaaca atgcgatggc cgcctaagga gcaaggttcg ggttgcacgt cttggcggcg
     6181 acctctttct ccactcgtca tttccgacaa ttgacagcga tgcggtgttc ttcggacccg
     6241 atacgtatcg ttttgcccgc ttcgtcactg acagcattgt ccatatggag ctcgacccgg
     6301 cctcggtagt cgacatgggc gcgggaagtg ccgcgggtgc cgttgcagca gcaagaatgc
     6361 ttccgtccgc tcgactgacc tgtgtcgatg tcaatccgcg cgccctcgaa cttgccgcaa
     6421 tcaacctgcg cgcggcggga atcgaagcgg aactggtgtg ctcgtcgaag ctccccgatg
     6481 gagccgatct cgtgattgcc aatcccccgt acatgatgga ttccgagcaa cgcgcctatc
     6541 gtgatggtgg cggtctgctc ggtggcgagg tcgcgctcga ctgggcgaga aatgcactaa
     6601 gcgcaatgag cgcgactggc acaatgttgc tctacagcgg agcgtccgtg gtcgatggcg
     6661 tcgcgccact gatcggcgct ctacagcgcg cgtgcacatc agcgcgttcg caattcgatt
     6721 tcgaggagat tgaccccgat gtcttcggcg aagaacttga ccagcgagct tatggcgcgg
     6781 tcgagcgaat cgaagtcatt ggcgcgacga ttaggagagc ctaaccctac gccgcctcga
     6841 gcttgcgcgc ttcgcgcttg cgctcatgcg ggtcgagata gcgcttgcga atgcgaatgg
     6901 ccttgggcgt gacctccacc agttcgtcgt cctggatgta agcaatcgcc tgttcgaggc
     6961 tcattcgccg gggtggtgtg agacgaatgc cttcgtcctt ccccgatgca cggaagttag
     7021 tgagctgctt cgattttaag gggttcacct cgagatcctg aggttttgca ttttcgccaa
     7081 tgaccatccc ttcgtagagc atttcgcccg gcgaaacgaa aaggactccg cgatcttcaa
     7141 gagcattgag cgcgtaggcg acggccgcgc cttgctccat tgagatgaga acaccgttct
     7201 gccggccggc gatcggcccc ttgtaggggc cgtatttctc gaaaagccgg ttcatgatcc
     7261 cggttccgcg cgtgtcggaa aggaattcgc catggtaacc gatgaggccg cgcgacggcg
     7321 ccgagaaggt aagtcgagtc ttcccgccac ccgacggtcg catgtccgtc atctcggcct
     7381 tgcgcatcgc catcttgtcg atgaccgtcc ctgaaaactc gtcatcgacg tcgacgacga
     7441 ccgtttcata aggctcctcg cggccattcg gaccgtcacg gaacagcacg cgcggccgac
     7501 tgattccgag ctcgaaacct tctcgacgga gcgtctcgat caatacaccg agctggagct
     7561 cgccgcgccc ggcgacttca taagcttctc cgccggccgt ttcggtaacc cgaattgcca
     7621 cattcccttc ggcttcgcga agaagacggt cacgaataac acggctctgg accttgtcgc
     7681 cgtccttccc ggcaaagggg ctgtcgttaa cggcaaaggt catgctgagc gtcggcggat
     7741 cgatttcacg cgccgcgagc ggctcggtca tcagcggggt tccaatggtg ttcgaaacgg
     7801 tggccttgat gacaccggca atcgcgatga tgtctcccgc atccgcgctg tcgacaggca
     7861 cccgttcgag cccgcggaac gcgaacaatt tggtcgctcg tccgtcctcg acgacattgc
     7921 cattaacgtc cattgcgcga atggggtcat tgacgctgat ccgtccgctc tcgacgcgcc
     7981 cggtcaaaat tcggccgagg aaaggatcgc gatcaagaag cgtggcaagc atcttgaatt
     8041 cgcccgaagc atcgagcttt ggcgccggga catggctgac gatggtttcg aacaatggcg
     8101 tgaggtcgcc gtcgcgcacg ctgtcctcgc gtccggcgta accggcccga cctgaagcat
     8161 agagggttgg aaaatcgagc tgttcgtcac ttgcatcaag gttgatgaag agttcgaaca
     8221 cttcatcgag cacctcggcc gcacgcgcat cgggacggtc aatcttgttc acgaccacaa
     8281 tcggtttcag tc
//
LOCUS       DASRBJ010000312         4654 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_187546,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000312 DASRBJ010000000
VERSION     DASRBJ010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4654
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187546"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..238
                     /locus_tag="VE968_08675"
     CDS             104..238
                     /locus_tag="VE968_08675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51930.1"
                     /translation="MADRTWTAPVLEELSIPAGTFGSTDDPNNNRDFSNGTDLSSTAS
                     "
     gene            321..1574
                     /locus_tag="VE968_08680"
     CDS             321..1574
                     /locus_tag="VE968_08680"
                     /inference="COORDINATES: protein motif:HMM:NF019619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HZU51931.1"
                     /translation="MGKVSFGELVNSGATPLPTSEFIRPAREISFAEIICPEGGSIEE
                     SDFVKHFCAKQMLHIAQDDRTRFEHLLSWRTINQLLSQNLLDQKLLRVARDGRDLPQS
                     LYRKDDGDIDAVDSRKLHDLLKQNASVALNAVQYYCPPVRRLATQMEVALGQRLNVNA
                     YMTFGPGGAFAMHYDSHDVLVLQVHGSKHWFIYDDPAPSPIDYVAKAKPEPREVVFET
                     VLQAGDVLYVPRGTYHRAAVTDTDSVHLTFGIQTFYGLKFIEWLLTEAEKEEIFRKDI
                     LTLSGPEVFAEQERAMKARLCEIINNTPLIENFERWRAKRRPVDRFHLGPREELDDYS
                     LLAPLLRSPQAWRDSVVKKGKEPSAAGERIIDTLIAKNFATIGELKAELGDVLDEDTI
                     KSTVAELIDDCWIELVHNFDGSGDG"
     gene            1567..2808
                     /locus_tag="VE968_08685"
     CDS             1567..2808
                     /locus_tag="VE968_08685"
                     /inference="COORDINATES: protein motif:HMM:NF019619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HZU51932.1"
                     /translation="MGKVSFDQINSLGGATPVPASEFFPPAREISFAEIICPDGGSIE
                     DSDFARHFREKKMLHIAQDDRTRFEHLLTWEMINDLLSLNMMEERGIRITRDGRDVPT
                     TLYRTKAREAWGNFVDSRKLHDLVKQNASIAINSIQFLSPPIRRLANQVEIALGQEVW
                     VNCYMTFGGGGAFAMHFDPHDVIVLQLQGSKHWFLYEDPEPAPLENAPQPKPPAPREV
                     AFETNLQAGDVLFVPRGTYHRAAVTDSDSLHLTIGIHTFKGVKFIDFVRSAAEKERFF
                     REDVSMLGGPEDFAEQERLLKARLCELVNQSSLSKFVEEWQLGRQPVFRFHLGPNHEL
                     DDDTMLAPLLRSRQAWAASVNKKGKEPSPASERIVESLIERNSATIGELKAEFAGVLD
                     EDTIKSTLAELLDDCWIEVVR"
     gene            2833..3114
                     /locus_tag="VE968_08690"
     CDS             2833..3114
                     /locus_tag="VE968_08690"
                     /inference="COORDINATES: protein motif:HMM:NF017239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqqD family peptide modification chaperone"
                     /protein_id="HZU51933.1"
                     /translation="MAEVQPKSVVALANNHFRADHDGSAIIMSISAGKFFSFDDIGFE
                     IWDAIQSPVCVNDLVATLAAKHDAPEDVVMPDVLTFLNKLSDNELITVE"
     gene            3111..4070
                     /locus_tag="VE968_08695"
     CDS             3111..4070
                     /locus_tag="VE968_08695"
                     /inference="COORDINATES: protein motif:HMM:NF019118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51934.1"
                     /translation="MTQANAASDYALCGWRFRSEIPVEALPAWDGDPARPPDIELVRG
                     SVPEVACQDPVSVVANGRNVATVVSVEAGRFAVTDGKRVVADVRPDALPGFVEVTIAG
                     PVLGTICYQRDIVSLHSNTILIDGKAIAISGRSGAGKSTMAAMLMKRGHRLISDDVLP
                     IFDRGGCTYAQPGSQNLRLWGEALELIGVSKDGLRRADGVRDKYFLPTADKTTQPWPL
                     AALIWLERGVTERHFLRPCKSMFRSRAIFKAIYRQHLWRDFAAMGSPGITNLALPGVA
                     VFDLLRPRSLDLLEEQAKAIENLASMDDLPKIDQPVPVRAAHR"
     gene            4219..4473
                     /locus_tag="VE968_08700"
     CDS             4219..4473
                     /locus_tag="VE968_08700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51935.1"
                     /translation="MSPAHEPNALAPVREREADEIMPRQPSVLGNRAERRNDRALADI
                     DAAVKAFMARQRSRLDGETDRCRDRRCSNIGPLRGDDANV"
BASE COUNT          941 a         1387 c         1403 g          923 t
ORIGIN      
        1 gacggctatt gttaactttt cgttttattt tcatcaaact tttgttatcc aaaccgagtc
       61 gaagcggaat catccgcaag actcaatagc agggaggcat ataatggctg accgtacttg
      121 gaccgctccg gttctcgaag agctgagcat tccggctggc acctttggtt cgaccgacga
      181 cccgaacaac aatcgggact tctcgaacgg gacagacctg agctcgaccg cttcctaagt
      241 taggaagaag gattgacggg ctcgccgtga cggatacctt catcgcgcga taatccgcga
      301 tttcgggggt ggatcgagcg atgggtaagg tttcgttcgg cgagcttgtc aattcagggg
      361 cgacaccgct cccgacatcc gaattcattc gaccggcgag ggagatttcc ttcgccgaaa
      421 tcatatgtcc cgaaggcggc tcgatcgagg agtcggactt cgtcaagcac ttctgcgcca
      481 agcagatgct tcacattgct caggacgacc ggacgcggtt cgaacacctc ctgtcctggc
      541 ggaccatcaa tcagctcctt tcgcagaacc tgctcgatca gaagctgctg cgcgtcgcgc
      601 gagacgggcg ggatctgccc cagtcgttat atcgcaagga tgacggcgac atcgatgccg
      661 tcgattcgag gaagctgcac gacctcttga agcagaacgc gagcgtcgcg ctgaatgcag
      721 tgcaatatta ttgcccgccc gtccgccggc tcgcgaccca gatggaagtg gcgctcgggc
      781 agaggctgaa cgtcaacgcc tatatgacgt tcggacccgg cggcgccttc gccatgcact
      841 acgattccca cgacgtcctg gtgttgcagg tgcatgggtc aaagcactgg ttcatttacg
      901 acgatccggc gccgtctccc atcgattatg tggcgaaggc caagcccgaa ccgcgggagg
      961 tagtcttcga gacggtgctt caggcgggcg atgtgctcta cgtgccccgg ggaacctatc
     1021 atcgagctgc cgtcaccgac acagattcag tccatctcac tttcggcatt cagacgttct
     1081 acggtctcaa gttcatcgag tggctcctca cggaggccga gaaggaagag atcttccgca
     1141 aggacatcct cacgctcagc ggaccggaag tcttcgcaga gcaggaacgg gccatgaagg
     1201 cgcgcctctg cgaaatcatc aacaacaccc ccttgatcga gaatttcgag cgttggcgcg
     1261 ccaagcggag accggtggat cgcttccacc ttggtccgcg cgaagagctc gacgattata
     1321 gcttgctcgc gccgcttcta cgttcgccgc aagcgtggcg agacagcgtc gtcaagaagg
     1381 gcaaagaacc ctccgccgcg ggtgagcgta ttatcgacac gcttattgcg aagaatttcg
     1441 ccaccattgg tgagctcaaa gccgagctcg gcgatgtact ggatgaggac acgatcaaat
     1501 cgacggttgc cgaactcatc gatgactgct ggatcgaact cgttcataat ttcgacgggt
     1561 ccggcgatgg gtaaggtttc gttcgaccag atcaactctc ttggtggggc aacaccggtc
     1621 cccgcatccg aattctttcc gccggcgagg gagatttcct tcgccgaaat catatgtccg
     1681 gacggcggct cgatcgagga ttcggatttc gccaggcatt tccgcgaaaa gaagatgctg
     1741 cacatcgccc aggatgatcg aaccaggttc gagcatcttc tcacctggga aatgatcaac
     1801 gacctcctgt cgctgaacat gatggaggag cggggaatcc gcatcactcg tgacgggcgg
     1861 gacgttccga cgacgttgta ccgcacgaag gcgcgcgagg cgtgggggaa tttcgtcgat
     1921 tcgaggaagc tccacgatct cgtgaagcag aacgcgagca tcgcgatcaa ttccattcag
     1981 ttcctgtcgc cgcccatccg ccggctcgcc aatcaggtcg agatcgcgct cggtcaggaa
     2041 gtatgggtca attgctatat gaccttcgga ggcggtggag ccttcgcgat gcatttcgac
     2101 ccgcacgacg tcatcgtgct gcagctgcag ggatcgaaac actggttcct ctatgaggac
     2161 cccgagccgg cgccgttgga gaatgcgcct cagcccaaac cgccggcgcc gcgtgaggtc
     2221 gccttcgaga cgaacctgca ggcgggcgac gttctcttcg ttccgcgcgg aacctaccac
     2281 cgtgccgccg tcaccgattc cgactcactc cacctgacga tcgggatcca taccttcaag
     2341 ggagtcaaat tcatcgactt cgtccgaagc gccgcggaga aagagagatt cttccgcgag
     2401 gacgtctcga tgctgggcgg cccggaagac ttcgccgagc aggagcgcct gctcaaggcc
     2461 cgcctgtgcg aactggtcaa tcagagctca ttgtccaaat tcgtcgagga atggcagctt
     2521 ggacggcagc ccgttttccg tttccatctg ggcccaaacc atgaactgga cgacgacacg
     2581 atgctggccc cgctccttcg ttcgcgacag gcgtgggcgg ccagcgtcaa caagaaagga
     2641 aaagagcctt cgcccgcgag tgaacgtatt gtcgagtcgc tcatcgagag gaattctgcg
     2701 acgattggcg aactgaaagc cgagtttgcc ggtgtgctgg atgaggacac gataaaatcg
     2761 actcttgccg aactcctcga tgactgctgg attgaagtcg ttcgctgagt ctaggctaag
     2821 ggggtaacga gtatggctga agttcagccc aagtcggtcg tggcgctggc caataatcat
     2881 ttccgggccg accatgacgg ttcggccatc atcatgagca tatcggcggg gaagttcttt
     2941 tccttcgacg acatcggctt cgagatttgg gacgcgatcc agagcccggt ttgcgtgaac
     3001 gacctggtcg cgactctcgc ggccaagcac gacgcgccgg aggacgtggt gatgcccgac
     3061 gtgctgacgt tcctgaacaa gctttcggat aacgaactga tcacggtgga atgacgcagg
     3121 ccaacgctgc gtcggactac gctctttgcg gctggcgctt tcgatccgaa attcccgttg
     3181 aagcactgcc cgcgtgggac ggcgaccccg ctcggccgcc cgacatcgaa ctcgttcgtg
     3241 gctccgttcc ggaagtcgcc tgccaggatc ccgtgagcgt cgtcgcgaac gggcgcaacg
     3301 ttgcgacggt ggtttcggtg gaagcaggcc ggttcgcggt caccgacggc aagagagtgg
     3361 tcgccgacgt gcggcccgac gcgcttccgg gctttgtcga agtcacgatt gccggaccgg
     3421 tgctcggcac catctgctac cagcgcgaca tcgtgtcgct tcacagcaat acgatcctga
     3481 tcgacggcaa ggccattgcg atttccggcc ggtcgggggc cggcaagtcg acgatggcgg
     3541 caatgctaat gaagcgtggg caccgcctga tttccgatga tgtcctgccg attttcgatc
     3601 ggggcggctg cacgtacgcg caacccggaa gtcagaatct gcggctttgg ggtgaagcgc
     3661 tggagctcat tggcgtgagc aaggacggtc ttcgtcgcgc cgacggagtc cgcgacaaat
     3721 atttcctgcc gacggctgac aaaactacgc agccgtggcc gctcgcggcg ctgatctggc
     3781 tcgaacgggg cgtgaccgag cgccacttct tgcgcccgtg caaaagcatg ttccgctcgc
     3841 gggccatctt caaggcaatc taccggcagc atctctggcg cgacttcgcg gcgatgggca
     3901 gcccggggat taccaatctg gcgctgcccg gcgtcgccgt tttcgacctg ctgcgcccga
     3961 ggagcctcga tctgctcgag gaacaggcga aggcgatcga gaatctcgcc tcaatggatg
     4021 atctgccgaa gatcgatcag ccggttccgg ttcgagcagc tcatcgataa tctccgcgag
     4081 cgctgtcttc cccagcggac cgccgagcct ttgatgaccg tacattcccc agcttagatt
     4141 ggcctcgagc agaattgggc cctcggcggt cagagccaca tcccagccga gagtcgcgaa
     4201 ggccggaaac gcctcgtcat gagccctgca cacgagccga atgcactcgc tccagtcagg
     4261 gagcgcgaag ccgatgagat catgcctcgt cagccgagcg tcctcggcaa tcgggctgag
     4321 cgtcgtaatg atcgtgccct ggcggacatc gatgccgcag tgaaagcctt catggcccgt
     4381 cagcgatccc gcctcgacgg cgagactgat cgatgccgtg atcggcgttg ctcgaatatt
     4441 ggtccccttc gcggtgacga tgcgaacgtt tgaaagtgct cgcgtgccga aggttttcag
     4501 atccggatga tcctccagcg ctggctgcac gatgcagttt tgcggacgga gccagtcgat
     4561 cagctcatcg gcagagcgct cttcaccacc gctcgagacg aatccgcggc cgtgcggacg
     4621 ccaaagctcg gcgccgacac cgcgattgcc ggtg
//
LOCUS       DASRBJ010000313         5788 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_392628,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000313 DASRBJ010000000
VERSION     DASRBJ010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5788
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392628"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            343..1404
                     /locus_tag="VE968_08705"
     CDS             343..1404
                     /locus_tag="VE968_08705"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HZU51936.1"
                     /translation="MRCGAMIVEFFVVLALCTGDAAASPPATKPVLPPVRDTAISPPS
                     TAVIDPTLEVGGKEVKAKEAETRLSVNVEINGRGPYRFIVDSGADSSAVGLAVAQSLQ
                     LPPAGEVLLNGTTSRELVPSVKVAALTLGSTTIRNLELPALRETDVGADGVIGIDALS
                     QQRLLLDFDHHLIRIEDGRTHFEDEQGEIVIVARRRRGQLILTQVRAGSIPLSAVIDT
                     GSEISIGNTALRDKIFRKHPEKFWTTSVIGVTGVSVKLELARIDELQIGPITLYNVPI
                     AFADVPPFELFGLSSEPSLILGTDLLQAFSRVSLDFRARKVRFQLRTCRTSGLVISTV
                     PESSYTRVSSASADGVCGP"
     gene            complement(1421..1960)
                     /locus_tag="VE968_08710"
     CDS             complement(1421..1960)
                     /locus_tag="VE968_08710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51937.1"
                     /translation="MSRILALLAGTTALAATSAQAQQSAQAEIYTRGAFKGPSMTFTG
                     PTQHIDPAFTARSIRISGSAAWELCSGNTYTGCRRVDKSLPGAVFIVRSARPVAPVMV
                     SHVSPPNQALRGVASEFFVAPNRGGRRVAVESGNPEQMRRAADEFCRSVGWQMSAHAQ
                     VQQDSDRFELIDVLCTNRP"
     gene            complement(2131..3645)
                     /locus_tag="VE968_08715"
     CDS             complement(2131..3645)
                     /locus_tag="VE968_08715"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HZU51938.1"
                     /translation="MPVVAFCASAWLTATTIASLGSPWWVNVTVSVVAMLCTALCVLD
                     NFSAEARHDAMIKRCSELQGQLECDPLTGLMNRSAFNKALTNLRANVSESVEVMVLFF
                     DLDRFKDVNDSLGHRAGDQLLVEVANRAGTVLSDATAFARLGGDEFAALVPLKGSVRP
                     QHYGELIVELINEPFDIDHHRVSVAASVGIATGDPFVDEGHELLRRADAAMYAAKGAA
                     RGSCRIFDEKLSGRQVRETSIRSELGTCLAEGGLKLVYQPLIDARTGVLSSAEALLRA
                     SSPGLANVDTATLISIAEKSGQIIELTEWTMDAVFSAIRELESTPVALNISPVYFRQP
                     QFVHKIIDRLLESDTPPDLLTIEVTEGVLIADMVAARESIAQLREIGVKLYLDDFGTC
                     YSSMSYLQHLELDGLKLDKTFLRNIGDHKKTSQIIKAMIDFGHSLDMRVVMEGVESEW
                     QVRLLQLLNCDLLQGYELGAPMELAELRALRDRVYLPAPQHQPSAGRPLKRGNL"
     gene            complement(3695..4207)
                     /locus_tag="VE968_08720"
     CDS             complement(3695..4207)
                     /locus_tag="VE968_08720"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZU51939.1"
                     /translation="MTVLQQSVNTLKLILIVDDIEDNRILLERALRSSGFETVSAASG
                     REALSVLSRVQPAMVLLDWMMPELSGLETLRAIRETYPRSKLPVIMCTAVGEEMSVVA
                     ALHAGANDYITKPISIPILRARMTTLFDQVAVIDALDTQKDEVARKLSERTRALLGSV
                     PPLPSRKSEA"
     gene            complement(4204..>5788)
                     /locus_tag="VE968_08725"
     CDS             complement(4204..>5788)
                     /locus_tag="VE968_08725"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZU51940.1"
                     /translation="WRQTREDVETLRRLIRRSSRRAEETLGQLDDARRKAEEQDNEKL
                     QFMAKIGHELRTPLNTILGYATLLHEDATEAGDQAAAADLERIMIAGRRLSMAVNDML
                     GWSKIESGTANLERKVINVQGMVEEVVSDENVHARKKVSVAVDFDHELGIIVGDPEKL
                     HHCLLNLIAGAAEKSEENKVTLSVTRLEKAGVQSVCFLVETSGGTSDAPVASRSKHLP
                     FSKQSSDGGLRFAVARRLAKLMGGDCIVEETSSKRVIIRMTLPITPAERREVSRERDE
                     LGARALRRSTRGKCALIIDDDEAALDLMRRWLEQMDYHVFVALDGETGLKLAREEQAD
                     LILLDGFLPGRSGYEVLAELRGDPVIGRTPVIFVTVDDDRSRGIECGASDYLRKPLTQ
                     EALRAVVDVYAGTSAGKILIIDDDEDAAELIRRSAEEVGFSTRHAANGLEGLAMVSQE
                     RPAAIVLDVRMPLMDGFSVIEHLARTEDLSEIPIVVVSGQDMNIAEHRRLTAAAHRVF
                     TKGTVSPRQIAQSLQEVVA"
BASE COUNT         1183 a         1710 c         1681 g         1214 t
ORIGIN      
        1 tgcagtcagg cgaatgtcgc cgctcacctc aagcgcactg gacgtttgaa caggcgaggt
       61 ctcgtcggcg aacgcgggga acgtccatag gcacgcaagc gcgcagccca gcaggacggc
      121 gcggcgcgga cgcatcgatc gaccgacaca gcacatcggg ctccggttaa tcgcctaagg
      181 taaagataat gctcaccaat cccacaaaag cgcgaagcga cagcacgctt cccggcaagg
      241 ccgttcgcag cgtgatttgc ggcatgcgtc gatcgcgact ggtcttagaa gatcgcgacc
      301 tatagcctaa tcagcgtgca gtgaacgaaa ggccaaggcg gcatgcgctg tggcgcgatg
      361 attgttgagt tcttcgtcgt ccttgcgctg tgcacaggcg atgcggcagc gagcccaccg
      421 gcgactaagc cagtgttacc acctgttcgg gatactgcca tttcgccgcc ctccaccgca
      481 gtgatcgatc caaccctcga agtcggcggc aaagaggtga aggcaaagga ggccgagacg
      541 cgcctcagcg tcaacgtgga aatcaacggt cgcggcccat atcgcttcat cgtcgacagc
      601 ggcgcggatt cgtcggccgt cggtcttgct gttgcacaat cccttcaact cccgccggca
      661 ggcgaagtcc ttctgaatgg aaccacttcg cgcgaacttg tgccgagcgt gaaggtggcg
      721 gcgctcactc ttggctcgac aaccatcaga aacctcgaac ttcccgcatt aagggaaacg
      781 gacgtcggcg ccgatggagt gatcggaata gacgcgctat cgcagcagcg ccttctcctc
      841 gacttcgacc accacctgat acgcatcgag gacggccgca cccacttcga ggatgagcaa
      901 ggtgaaatcg ttatcgttgc gcgtcgacgg cgaggtcagc tgatcctcac tcaggtccgc
      961 gcgggaagca tacccctatc cgccgtgatc gacaccggtt ccgagatctc gatcgggaat
     1021 acggcactcc gggacaagat ctttcgcaag catccggaga aattctggac gacgtcggtc
     1081 atcggagtga caggcgtttc ggtgaaactc gagctcgctc ggatcgacga acttcaaata
     1141 gggccgatta ctctttataa tgtgccaatt gcttttgccg acgtgccgcc gttcgaattg
     1201 ttcgggcttt cgagcgagcc atcacttatc ttaggcaccg atttgctgca ggccttcagc
     1261 cgcgtgtcgc tcgattttcg ggctcggaag gtccgctttc agttaagaac gtgcaggaca
     1321 agcgggctcg tgatcagcac tgttcccgag agctcctata cacgcgtgag ttccgcaagc
     1381 gccgatgggg tctgtggccc ttaagcccgt aagcaggcgt tcagggccga ttggtgcaca
     1441 agacgtcgat cagctcgaac cgatcagaat cttgctgtac ttgggcatgc gctgacatct
     1501 gccagccaac ggagcggcag aattcgtctg cggcacgtcg catctgttca ggatttcccg
     1561 attcgacagc aacgcgacga ccaccgcgat ttggagcaac gaaaaactcg ctcgcaacac
     1621 cgcgcagcgc ctgattgggc ggagaaacat ggctcaccat gaccggcgct accggacgcg
     1681 ctgatcgcac gatgaaaacc gccccgggaa gggatttgtc cacgcggcgg cagccggtgt
     1741 aggtgttgcc actgcaaagt tcccatgcgg cgctcccaga aatacggatg cttcgagccg
     1801 tgaacgcagg atcgatgtgc tgtgttggcc cagtgaacgt catgctcggg cccttgaacg
     1861 cgccgcgggt gtaaatctcg gcctgagccg actgctgcgc ttgtgcggat gtggctgcca
     1921 gcgcggtcgt gccggcaagg agcgcgagga tccggctcat gtttatgtcc ttcgtaaaag
     1981 cggaacctgt cagggggaag taactcagct tgcgacaacg cgctaggcac ggcgcgatca
     2041 ttctccgcgg ccagattgtc gttcgagttt cggtgccgag gcgcagttga acgaagtaga
     2101 tcgacgcgcc gcgttcgact ggcagatggt ctacagattg cctcgcttca gcggacgtcc
     2161 ggcgcttggt tgatgttgcg gtgcgggcaa gtacacgcgg tcgcgcagcg cgcgcagttc
     2221 ggcaagttcc attggcgctc cgagttcata gccctgcagt aagtcacagt tgagcaactg
     2281 cagcagacgg acctgccatt cgctttcgac accctccata acgacgcgca tgtcgagact
     2341 atggccaaag tcgatcatcg ccttgatgat ctgcgaagtc ttcttgtggt caccgatgtt
     2401 tcggaggaag gtcttgtcga gcttcaggcc atcgagctca agatgctgca gatagctcat
     2461 tgaagaatag cacgtgccaa agtcatcgag atagagtttg acgccgattt cgcgcagctg
     2521 ggcaattgat tccctcgctg caaccatgtc cgcgatgagg acaccttccg tcacctcgat
     2581 cgtgagaagg tcaggcggag tgtcgctttc gagcaaccgg tcaatgatct tgtggacgaa
     2641 ctgaggctgt cggaaataga cgggagaaat gttgagagcg accggggtcg actcaagttc
     2701 gcggattgcc gaaaatacgg cgtccattgt ccactcggta agctcgatga tctgcccgct
     2761 cttttcggcg atcgaaatga gcgtcgccgt gtcgacgttt gcaagcccgg gtgagcttgc
     2821 gcgaaggagg gcttctgcac tgctgaggac ccctgtcctc gcatcgatca gtggctgata
     2881 aacgagcttc agtcctccct cggcgaggca ggtcccaagc tccgaacgga tcgaggtctc
     2941 cctcacctgt ctaccgctga gcttttcatc gaagatccgg cagcttcctc gtgcggctcc
     3001 cttggccgca tacattgcgg catcggcacg ccttaacagc tcgtgcccct cgtcgacgaa
     3061 cgggtcgccg gtcgcaatgc caacggatgc tgcaacgctc acgcgatgat gatcgatgtc
     3121 gaatggctcg ttgatgagct cgacgatcag ttcaccataa tgttgtggcc ggactgatcc
     3181 cttcagcggc accaaagctg caaattcgtc accgccaagg cgggcgaagg cggtcgcgtc
     3241 gcttagaact gttcccgcgc ggttcgcaac ttcgaccagc agctggtcgc ccgcgcggtg
     3301 gccaagcgaa tcatttacgt ccttgaaccg gtcgaggtcg aagaagagaa ccatgacttc
     3361 aacggattcg gagacattgg cccggagatt ggtgagagcc ttgttaaacg cgctccggtt
     3421 cataagtccg gttagtggat cgcactcaag ttgcccttgg agttccgagc agcgcttgat
     3481 catcgcgtca tgtcgagctt ctgctgaaaa attgtcgagc acgcacaatg ctgtgcacaa
     3541 catcgcaaca acggagacag tgacattcac ccaccacggc gaaccaagtg atgcaattgt
     3601 cgtcgccgtg agccacgccg atgcgcaaaa tgccacgacg ggcatggctc gttcaatctt
     3661 gcgtcgacgt tggctaacca tgacgtccac gttgctacgc ttcgctcttc cgtgatggta
     3721 gcggaggcac agagccgagg agcgcacgcg tgcgttcgga cagcttccgc gcaacttcgt
     3781 ccttttgcgt gtcgagcgca tcaatgaccg cgacctgatc gaacaaagta gtcattcgcg
     3841 cgcgaaggat ggggatgctt attggtttcg tgatatagtc attcgcgccg gcgtgcagtg
     3901 ccgcaactac ggacatctct tcaccaacgg ctgtgcacat gatcactggc agcttcgagc
     3961 gaggataagt ctcacggatc gcgcgaagtg tctcgaggcc ggatagctct ggcatcatcc
     4021 aatcgagaag taccatcgcc ggttgcacgc gcgagagtac cgacagggcc tctctgccgc
     4081 tcgccgcact gacggtctcg aagccgctgg agcgcaatgc gcgttcaagc agaattcgat
     4141 tgtcttcgat atcatcgaca atgaggatga gcttgagcgt gttgacgctc tgctggagga
     4201 cagtcacgct acgacctcct gcagagactg ggcaatctgc ctcggcgaaa ccgtcccctt
     4261 cgtaaaaacg cggtgcgccg ccgcggtcag gcgacggtgc tcggcgatat tcatgtcctg
     4321 gcccgaaacc acgacgatcg gtatctcgct gagatcttcg gttcgcgcga ggtgctcgat
     4381 tacggaaaaa ccgtccatca aaggcattct gacgtcgaga acgatggcgg cgggtcgctc
     4441 ttgcgatacc atcgcaagac cttcaaggcc atttgccgcg tgtcgcgttg aaaagccgac
     4501 ttcctccgcg cttcgcctga tcaattcggc agcgtcctcg tcgtcgtcga tgatcaggat
     4561 cttgccggcc gacgttcccg cgtaaacgtc aacgactgcg cgaagagctt cttgggtcag
     4621 gggcttgcgc aggtagtcgc ttgcgccaca ctcgatgccg cggctgcgat catcatcaac
     4681 ggtcacgaaa atgactggcg tgcgtccaat cacaggatcg ccgcgcagtt ctgcaaggac
     4741 ctcgtaaccc gagcggccag gcagaaaccc gtctagcaag atgaggtccg cctgttcctc
     4801 gcgtgcgagc ttaagccccg tttcaccgtc aagagcaacg aacacatgat agtccatttg
     4861 ctcgagccag cgacgcatga ggtccagcgc tgcttcatca tcgtcgatga tcaatgcaca
     4921 cttgccgcgc gtcgagcggc gcagcgctcg ggcaccaagc tcgtccctct ctctcgacac
     4981 ctctcggcgc tcagcggggg ttattggaag ggtcattcgg ataattaccc tcttgctgct
     5041 cgtctcttcg acgatgcagt cgccacccat caacttcgca agcctccgcg cgacagcgaa
     5101 gcgcaatcca ccgtcagagg attgtttgct gaacggcaga tgcttcgatc ttgacgcaac
     5161 aggagcgtcg cttgtcccgc ccgaggtttc gaccaggaag cagacgcttt gaacgcccgc
     5221 tttctcgagc cgggtgacag atagtgtgac cttgttttcc tcactcttct cggccgctcc
     5281 ggcgatgaga ttgagaaggc aatgatgcaa tttctcaggg tcgccgacga taattccaag
     5341 ctcgtgatcg aagtcgacgg cgacactcac cttcttacgc gcatgaacat tttcgtccga
     5401 cacgacttct tcgaccatcc cttgaacgtt gattaccttc cgttcgaggt ttgcggttcc
     5461 ggactcgatc ttgctccagc cgagcatgtc gttgacggcc atggagaggc ggcgtccagc
     5521 aatcatgata cgctcaagat ccgccgcagc agcttggtcg cctgcctccg tcgcgtcctc
     5581 gtggagcagg gtcgcgtagc cgaggattgt attcaacggt gttcgaagtt cgtggccaat
     5641 ctttgccatg aattgcaatt tctcattgtc ctgttcttca gctttgcgcc gcgcatcatc
     5701 gagttggccg agtgtctcct cggcgcggcg cgagctgcgg cgaatgagcc ggcgaagggt
     5761 ttccacgtct tctcttgtct gccgccag
//
LOCUS       DASRBJ010000314         3264 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_645426,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000314 DASRBJ010000000
VERSION     DASRBJ010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3264
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_645426"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(46..1137)
                     /gene="purM"
                     /locus_tag="VE968_08730"
     CDS             complement(46..1137)
                     /gene="purM"
                     /locus_tag="VE968_08730"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007164778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HZU51941.1"
                     /translation="MSQKPLTYADAGVSIDAGNALVKTIAPLARATARPGANAELGGF
                     GGIFDLKAAGYRDPLLVAANDGVGTKLKLAIETGIHAGVGIDLVAMCANDLIVQGAEP
                     LFFLDYYATGKLDTKVAAEVVASIAQGCREAGCALIGGETAEMPGMYSTGDYDLAGFC
                     VGAVERERVLTGSSIAPGDLVLGLASTGVHSNGFSLVRRIIAKEKWNLEERLPGQENR
                     TLAEAFLEPTRIYVRALLPLLQQGRIKGLAHITGGGLLENIPRVLPQGCHALISADEI
                     ELPQLFALLQQGGTIAPQEMVRTFNCGVGMVAVVDPRQVNDITASLRAAGETVLEIGR
                     IEEGRRGCTVRGRSGTWSSPSDWSVTHDA"
     gene            1203..2507
                     /locus_tag="VE968_08735"
     CDS             1203..2507
                     /locus_tag="VE968_08735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HZU51942.1"
                     /translation="MLRPRLAVPLMIFAAAAGLGGALYAQLESTDRGILPLDSSNTLE
                     IGGIHVDVGAKDAQTARYTGWRIAQREGFKALWAKMHNAPVAQAPTLPDDTLDQIVSS
                     IDVEREQIGPNRYIADLGVQFDRGRAAPFLGVEGAAVVHSAPMLLIPVTISGGTATSV
                     EVRNAWQRAWAQFHTAQSPIDYVRVSGMGADPLLINASQTHRPGRGWWRNLLQMYGAS
                     DVLVAEVQLQRLYPGGPARGRFIARHGPDDEIIGGFTLTAANSEGIPAMMAEGAERID
                     QIFAQAMVAGRLSRDSSLDLPPPPTLPPLPVQQKPVAAPAANTVNSFQVQVTGKNVNF
                     YNFAMAHLHTLPGVESATPQQINPGGTSYILVRFKGSVAQLAAALAGRGWTVESSGTV
                     VKIHSDAEKPPALPPPPAPTPPGPTTGQPQTPPATQPPRGVE"
     gene            2504..3127
                     /locus_tag="VE968_08740"
     CDS             2504..3127
                     /locus_tag="VE968_08740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA/Hda family protein"
                     /protein_id="HZU51943.1"
                     /translation="MKRGPDQIALPLDWPQSDGDSRFIVSDANREAFEHFRKFSIWPV
                     KATILTGPRRSGRTLLARTFIERVGGRLFDDAEQRDEEELFHAWNQAQETGRPLVMVA
                     DTAPPEWSPRLPDLKTRLAITPVATITRPDDALFAALTQLHFADRGLHVPADALRFMS
                     ERLHRDYWTAERAVEAIDRYAIAERARVSVPTIRRALSEAGMIGEAA"
BASE COUNT          648 a         1034 c          973 g          609 t
ORIGIN      
        1 atgttgctac cgcgtccgga gatcaggact gcaacgcgct tcgggtcacg catcgtgagt
       61 gacggaccaa tcggacggtg aagaccatgt gcccgaacgg ccgcgaacag tgcagccgcg
      121 gcgaccttct tctatccggc cgatctccag aactgtttca ccagcagcgc gaagcgaggc
      181 cgtaatgtcg ttcacctgac gaggatcgac gacggcgacc atcccgacgc cacaattgaa
      241 tgttcgaacc atctcctgcg gcgcgatagt tccaccttgc tggagcaatg cgaacaactg
      301 cggcagctcg atctcatcgg cagaaatgag cgcgtggcat ccctgcggca ggacacgcgg
      361 gatattctcg agaagtccgc cgccggtaat atgggcaagc cccttgatcc gaccttgctg
      421 aagaagcgga agaagagcgc gaacataaat gcgcgttggc tccaggaaag cctcggcaag
      481 ggtccggttt tcctggcctg gcaggcgttc ttcgaggttc cacttctcct tggcgatgat
      541 tcgccgaaca agagaaaacc cgttgctgtg cacgccggtg cttgccagtc cgagcacgag
      601 atcgcccggc gcgatagagc tgccggttag gacccgctcg cgctcgacgg ctccaacaca
      661 gaagccggcg aggtcataat cgcccgtcga atacattccc ggcatctcgg ctgtttcgcc
      721 gccaatcagg gcacagcccg cttctcggca tccttgtgca atcgaagcga cgacctcggc
      781 tgcgaccttg gtgtcgagct tcccagttgc ataatagtcg aggaagaaca gtggctcggc
      841 gccttgaacg atcaagtcgt tcgcgcacat cgcgacgaga tcaattccaa cgccggcatg
      901 aatacccgtt tcaattgcga gcttgagctt ggttccgacc ccgtcatttg cggcgacgag
      961 gagcgggtca cgatagcccg cggccttcaa atcaaagatt ccgccgaagc ctccaagctc
     1021 cgcgttcgct cccggtcgcg cggtcgcccg cgcaagcgga gcaatcgtct ttacgagcgc
     1081 atttccggca tcgatcgaca cgccggcgtc ggcataggtc agcggcttct ggctcattgc
     1141 ggcggccagt agagacaagc cgcttggatt tccacgccat tgtcgtcaaa agactgcctc
     1201 gaatgcttcg tcctcgtctt gccgtacccc taatgatctt tgccgctgct gccggtctcg
     1261 gcggcgcgct ctatgcacag ctcgagagca cggatcgcgg catccttccg ctcgacagct
     1321 ccaacaccct tgagattggc ggaattcacg tcgatgtcgg tgccaaggac gcacagacgg
     1381 cgcgatatac cggctggcgc atagcgcagc gggaaggctt caaggcactt tgggccaaga
     1441 tgcacaacgc gccggtcgct caagccccga ctcttcccga tgacacgctc gatcagatcg
     1501 tcagttcaat cgacgtcgag cgcgagcaga tcggtcccaa tcgctatatc gccgacctcg
     1561 gggttcagtt cgaccgcggg agggcggctc cgttcctcgg cgtcgaaggt gctgccgtcg
     1621 tccactcggc gccaatgctc ctcatcccgg tgacgatctc cggcgggact gcaaccagtg
     1681 tcgaagtgcg aaatgcctgg cagcgtgcct gggcccagtt ccacacggca caaagcccga
     1741 tcgactatgt gcgggtgagc ggcatgggcg ccgatccctt gctcatcaat gcttcgcaga
     1801 ctcaccggcc gggtcgcggt tggtggcgta atcttctgca aatgtatggt gcttccgacg
     1861 ttctcgtcgc tgaagttcag ttgcagcgcc tctatcctgg aggacccgca cgtgggcggt
     1921 ttatcgcgcg tcacggtccc gatgatgaaa tcattggagg tttcacgctg accgctgcaa
     1981 acagcgaggg cattccagcg atgatggccg aaggcgccga gcggatcgac cagattttcg
     2041 cacaagcgat ggtcgcgggt cgcctctcgc gcgattcatc gcttgaccta ccgccgccac
     2101 cgacgttgcc accacttccg gtgcagcaga agcccgtagc ggcaccggcg gcgaacaccg
     2161 ttaactcttt ccaggttcaa gtcacgggca agaacgtcaa tttctacaac ttcgcgatgg
     2221 cgcacttgca cacgctgcca ggggttgaat cagcaacgcc ccagcagatc aatccaggag
     2281 gcacgagcta tatcctcgtc cgcttcaagg ggagcgttgc gcagctcgct gcagcgctcg
     2341 ccggccgtgg ctggaccgtt gaaagcagcg gaacggtagt caagatccac tctgacgcag
     2401 agaagcctcc ggcattgccg ccgcctccgg cgccgactcc gccaggtcca acgactggcc
     2461 agccgcaaac tccacccgct acccagccac cgaggggcgt tgagtgaagc gcggtccgga
     2521 ccaaatcgca ctgccgctcg actggccgca aagcgacggc gactcgcggt tcatcgtctc
     2581 ggatgcaaac agggaagcct tcgaacattt tcgcaagttc agcatctggc cggtgaaggc
     2641 aacgatcctg actgggccgc ggcggtcggg tcgaacattg ctcgcacgaa cattcatcga
     2701 gcgcgtcggc gggcggcttt tcgacgatgc cgagcagcgt gacgaggagg agctatttca
     2761 cgcctggaac caggcgcaag aaacggggcg gccgctcgtg atggtcgcgg acacggcgcc
     2821 gccggaatgg tcgccgaggc taccggatct caagacccgg ctcgcaatta cgccggtcgc
     2881 aacaattacg cgccccgacg atgcgctctt tgccgcgctc acccagctcc actttgcgga
     2941 tcgtggattg cacgttccgg ccgatgcgct gcgatttatg agcgaacgcc tccaccgtga
     3001 ttattggaca gccgaaagag cagtcgaggc gattgatcgc tatgcgattg ccgagcgtgc
     3061 gcgcgtatct gtaccaacta tccggcgagc actgagcgaa gcgggaatga tcggcgaggc
     3121 tgcctaaccg cagttgatct tcgtgatcat gtgcttgcgg tcaacgtaga cgttcacgcg
     3181 gtcggcgcgg aaatccatcg tcagcatggt tcccggaaat gcccagcgaa gcaccgcggc
     3241 tcgagtgacg tcccggatcg cagc
//
LOCUS       DASRBJ010000315         4272 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_645525,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000315 DASRBJ010000000
VERSION     DASRBJ010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4272
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_645525"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..377
                     /locus_tag="VE968_08745"
     CDS             <1..377
                     /locus_tag="VE968_08745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HZU51944.1"
                     /translation="YSLIQPWLKTASPAPSRERLQSPEDRAQLDGLYECILCFCCSTS
                     CPSYWWNSDRFLGPAILLQAYRWLADSRDEATGERLDQLEDPFRLYRCHTIMNCANVC
                     PKGLNPAKAIAETKKLIAERTA"
     gene            374..871
                     /locus_tag="VE968_08750"
     CDS             374..871
                     /locus_tag="VE968_08750"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF025008.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HZU51945.1"
                     /translation="MSEHSTHNDLMEDVGVPQGAAPDPDHEGWYSWGDFPRSSFAAAT
                     GRLLFKPDGPGRGIARMFPTNDHMNMGGSIHGGAVMSFIDMALFAGGLCAGMERAHYV
                     TLDLTTHFLARGQAGSPLDAYVELVKQTRGHVFLQGLVKQNGENCYSFTGTLKRVSRP
                     NGPHS"
     gene            868..1977
                     /gene="zapE"
                     /locus_tag="VE968_08755"
     CDS             868..1977
                     /gene="zapE"
                     /locus_tag="VE968_08755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010337481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HZU51946.1"
                     /translation="MTSGPVRVAYDRLITGKELKPDPAQARAVAGLDRLAASLVPAHG
                     FFSQLFRAKTDSPAGVYLWGGVGRGKSMLMDLAFAHIGIEPKRRVHFHEFMLETHARL
                     RAARQHEEGDPIEPVAQEIASEARLLCFDEMHVTNPADAMILSRLFVKLLAHDVKIVT
                     TSNRPPRDLYKDGINRELFIPFIELIERRMLIVEVNGPTDYRLDRLSGVEVWHVPNGP
                     KATAALSRAFFQLTDYPVEDRANVPSEDIEIGGGRKLHVPKSLKGVAVFSFKRLCGEP
                     RGPADYLAIARRYHSVILVGIPKMGPQMRNEAARFVTLIDALYEHNVKLLAAADAQPD
                     GLYPKGDGSFEFQRTVSRLEEMRSAEYLAQGHGTV"
     gene            2009..2329
                     /locus_tag="VE968_08760"
     CDS             2009..2329
                     /locus_tag="VE968_08760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-binding domain-containing protein"
                     /protein_id="HZU51947.1"
                     /translation="MIVTTTENVAGHRTIEALGQVFGVVVRSRSIGGNLAAALRSIGG
                     GEIKEYTALVEETRRHAIDRLVTNATAMGANAVVMMRFDSGEIGQTMSEVVAYGTAVR
                     IEAA"
     gene            2326..2628
                     /locus_tag="VE968_08765"
     CDS             2326..2628
                     /locus_tag="VE968_08765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51948.1"
                     /translation="MSGWRNWALFAGALVALCGLLLLRVAGGPMILILGLLMLVTAAL
                     EPVYGRPNGAPVGNQWRPTDERFVDPQTGKVVTVWFDTKTGERRYVDAPEEPPAAT"
     gene            2685..4115
                     /locus_tag="VE968_08770"
     CDS             2685..4115
                     /locus_tag="VE968_08770"
                     /inference="COORDINATES: protein motif:HMM:NF006596.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HZU51949.1"
                     /translation="MRNLLAATMLAAVVSSVASAAAPELTAQERQATHDMFEHVINTP
                     TVIGRHNVPQMAQYVADQFRNAGFPVSDIHVIPYHTGSATTGDDDTAALIVRWRANAP
                     SKRPLLLMGHMDVVEAKREDSSTDPFTMTERDGYYYGRGTIDMKDGITAITQAMINLR
                     KAGFRPKRDIVVLFTGDEETNGIGAKKGATEWLDLLGHPEFGLNADGGGGGYNVDGSP
                     AGFAMQTAEKTFAGYTFTVRNRGGHSSKPRKDNAIYSLAHALDKLEAYRFTPKLNDTT
                     RAYFTAKAKMDKGPLGDAMRHWLANPDDAQAADFIEASESEVGLTRTRCVPTRLFGGH
                     ADNALPQLATAMINCRIFPGEDPNAVKAELERLVNDPTVVVTRNDDNVASLASPLRSD
                     VTSAYTHAVETLHPGMPVFPEMSTGASDARPFRVAGIPVYGVNGAWVQVPTDFRAHGK
                     DERIPVQSLYDNVVHWQLMLADLAGK"
BASE COUNT          890 a         1246 c         1287 g          849 t
ORIGIN      
        1 aatattcatt gatccaacct tggctcaaga cggcaagccc ggcgccttcg cgtgagcgac
       61 tgcagtctcc tgaggatcgc gcgcagctcg atggcctcta tgagtgcatc ctatgcttct
      121 gctgttcgac gagctgcccc agctattggt ggaattcgga ccgcttcctc ggcccggcaa
      181 tcttgctcca ggcgtatcgc tggctcgccg atagtcgcga cgaggccacc ggcgagcgcc
      241 tcgaccagct cgaggatccg ttccgtctat atcgctgcca cacgatcatg aattgtgcga
      301 acgtgtgccc aaagggtctc aaccccgcaa aggcgattgc cgagaccaaa aagctgattg
      361 ccgaacgcac ggcgtgagcg agcattcgac gcacaacgat ttgatggagg acgtcggcgt
      421 cccgcaagga gctgctcccg accccgacca cgagggctgg tacagctggg gcgacttccc
      481 gcgttcgagc ttcgctgcag cgaccgggcg cttgttattc aagccggatg gtcctggccg
      541 cggaattgcg cgaatgtttc cgaccaacga tcacatgaac atgggcggat cgattcatgg
      601 gggcgccgtg atgagcttca tcgacatggc gctttttgcg ggtgggttgt gcgccggcat
      661 ggagcgagcc cattatgtga cgcttgacct cacgacacac tttcttgcgc gtggacaggc
      721 cggctccccg ctcgatgcgt atgtcgagct cgtgaagcaa acccgaggcc atgtgttcct
      781 tcagggactg gtcaagcaga atggtgagaa ttgctatagc ttcacgggca ctctgaagcg
      841 cgtcagtcgg cctaacgggc cccattcatg acgagtggac ccgttcgggt cgcttatgat
      901 cgcctgatta ccgggaagga gctgaagccc gatcccgcgc aggcgcgcgc cgttgcgggc
      961 ctcgatcgtc tcgccgcaag tcttgttcca gcccacggct tcttctcgca actgttccgc
     1021 gcaaagaccg acagtcccgc gggagtgtat ctttggggcg gggtcggacg aggcaagtcg
     1081 atgctgatgg atcttgcctt cgcgcatatc ggaatagagc ccaagcgccg ggtgcacttc
     1141 cacgagttca tgctcgaaac gcatgcacgg cttcgcgccg cacgacagca cgaggaaggg
     1201 gatccgatcg aacccgttgc ccaggagatt gcctcggaag cacggcttct ttgttttgac
     1261 gagatgcacg tcacgaaccc ggccgatgca atgatcctgt cgcggttgtt cgtgaaattg
     1321 ctcgcgcatg atgtgaagat cgtaacaacg tcaaatcggc caccgcgcga cctctataag
     1381 gatggcatca accgcgagct gttcattcct ttcatcgagc tgatcgagcg ccgaatgctc
     1441 atcgtcgagg taaacggacc aacggattat cggctcgatc gcttgagtgg agtcgaagtc
     1501 tggcacgttc ccaacggccc caaagcaacc gcagcactga gccgcgcatt cttccagctc
     1561 accgattatc cggttgaaga tcgagcgaac gtcccgtctg aagacatcga gattgggggc
     1621 ggtcgaaaac tgcacgtgcc caagagcctc aagggcgtcg cggtcttctc tttcaagagg
     1681 ttgtgcggag aaccgcgagg cccggcggat tatctcgcga ttgctcgacg atatcacagc
     1741 gtgattctcg tcggcattcc gaagatgggc ccccagatgc gcaacgaggc ggcccgcttc
     1801 gttacactca ttgatgccct ttacgagcat aacgtcaaac tcctcgctgc tgccgacgcg
     1861 cagccggacg gcctttatcc caagggagac ggcagtttcg aattccagcg taccgtcagc
     1921 aggctcgagg agatgcgcag cgccgagtat ctagcgcagg gccatggtac cgtttagcct
     1981 tccgtagggg cgaagggaga ccatggaaat gatcgtaacc acaaccgaga atgttgctgg
     2041 tcaccggaca atagaagcac tcggccaagt cttcggtgtc gtcgtgcgca gccgaagtat
     2101 cggcggcaac cttgccgccg ccttgcgctc gatcggtgga ggcgagatca aggaatatac
     2161 ggctctcgtc gaagagaccc gtcgtcacgc gatcgacagg ctcgtgacga acgcaacggc
     2221 catgggcgca aacgccgtgg tcatgatgcg tttcgattcg ggcgagattg gacagaccat
     2281 gagcgaggtc gtcgcctacg gcacggcggt gaggatagaa gcggcgtgag cggctggcgc
     2341 aactgggcgc tatttgctgg cgctcttgtc gcactttgcg gcttgttgct gttgcgcgtt
     2401 gccggcggac caatgatctt gatcttggga ctcttgatgc tcgttacggc agccctcgag
     2461 ccagtttacg gtcgtcccaa tggcgctcca gttggcaatc aatggcggcc aaccgacgag
     2521 cgcttcgtcg atcctcaaac ggggaaagtc gtcaccgtct ggttcgatac gaaaaccggc
     2581 gagagacgct acgttgacgc gcctgaagaa cctccggcag cgacttgacg tggccttcgc
     2641 cacgactacg catttggcaa tcggatcttg gggagcctct ctaaatgcgt aatctgcttg
     2701 ccgccaccat gcttgctgct gtcgtttcga gcgtcgcgag cgcagcggca ccagagctga
     2761 cggctcaaga gcgacaagca acgcacgaca tgtttgaaca tgtcatcaac acgccgacgg
     2821 tgatcgggcg tcacaacgtc ccccaaatgg cgcaatatgt agcggaccag ttcaggaacg
     2881 ccggttttcc agtctcggac atacacgtaa ttccctacca cacggggagt gcaacaacgg
     2941 gtgacgacga caccgccgcc ttgattgtcc ggtggcgcgc caatgctcca tccaagcgac
     3001 cactccttct gatggggcat atggacgtcg ttgaggcgaa gcgagaagac tcgtcgaccg
     3061 acccgttcac gatgacggag cgggatggct attattacgg gcgcggtaca atcgacatga
     3121 aggatgggat caccgccatc actcaggcga tgatcaatct gaggaaggcc gggttcaggc
     3181 cgaaacgtga tattgtggtg ttgttcactg gagacgagga aacgaacggc atcggcgcga
     3241 agaaaggcgc gaccgaatgg ctcgacttgt tgggtcatcc cgaattcggg ctaaacgccg
     3301 acggcggcgg tggcgggtac aatgtcgatg gcagtcccgc cggcttcgca atgcaaactg
     3361 ccgagaagac gtttgccggc tacacgttca cggtccgcaa ccgcggcggc cattcgtcaa
     3421 aaccgcgcaa ggacaacgca atctacagcc ttgcacacgc gctggacaag ctcgaagcct
     3481 atcgcttcac gccgaagctt aacgatacaa cgcgtgcata cttcaccgcc aaagcgaaga
     3541 tggacaaggg gccgctcggc gatgcgatga ggcactggtt ggcgaatcct gatgacgcgc
     3601 aggcagctga tttcatcgag gcgagcgaga gtgaggtggg cctcacgcga acacgctgcg
     3661 ttccgacgcg gttgttcggc ggccatgccg ataacgccct cccacagctt gcaacggcaa
     3721 tgatcaactg tcggattttc cccggcgaag atcccaatgc ggtgaaggca gaacttgagc
     3781 ggctagtgaa tgatccgacg gtcgtcgtaa cgcgcaacga tgacaatgtc gcgtcgctcg
     3841 cgtcgccgct tcgcagcgat gtgaccagcg cctacacgca tgcggtcgag acgcttcatc
     3901 ccggcatgcc ggtatttccc gaaatgtcga ccggcgccag tgatgctcga ccgttccgcg
     3961 tcgccggaat tccggtttac ggcgtaaacg gcgcttgggt gcaagtcccg acggatttca
     4021 gagctcatgg gaaggacgag cggattccgg tgcaatcgct gtacgacaac gtcgttcatt
     4081 ggcagttgat gcttgctgat ctagccggaa aataggtttt tgaagacaat gggtttccca
     4141 tcacaaagga tgatttgatg cgccgtttcg ttgcccttgt acttgccgtt tgctcgacga
     4201 gtgccatcgc cgccgtcgac ccccggacag ttccgacgca attgcctcca gcatggcagg
     4261 cgaagactcg cg
//
LOCUS       DASRBJ010000316         5080 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_141478,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000316 DASRBJ010000000
VERSION     DASRBJ010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5080
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141478"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..529
                     /locus_tag="VE968_08775"
     CDS             <1..529
                     /locus_tag="VE968_08775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51950.1"
                     /translation="GPAPATAPVPAPSPEPQRECTNQNKDPNGNEIVVCAIKPEGYRL
                     PPDIVEARRLKKEGITVRPRNPHETYATHDCARVGPMGCLGTPTINMMAVAATAAEIT
                     KRMQEGKDVGSVFETEKSSTDYQLYQMAKKEREEKEAAAAIKAVKDKAKAQLAAKAAA
                     DKAASTSADASSPTN"
     gene            complement(581..979)
                     /locus_tag="VE968_08780"
     CDS             complement(581..979)
                     /locus_tag="VE968_08780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HZU51951.1"
                     /translation="MKKLILAMSAASVAIMPGAAMAQRYNGDWNRVRAYDYNNPEPGH
                     SPYYADRYYRPGPEYVMSRGDRIYRGRDGRFYCRRRDGSTGLVVGAAIGAVVGNSLRL
                     GGSSTLGTILGGAAGAALGSSVDSHRLRCR"
     gene            1131..1478
                     /locus_tag="VE968_08785"
     CDS             1131..1478
                     /locus_tag="VE968_08785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51952.1"
                     /translation="MQRSASLSKYLNPWKFRREEAARQQRVADLRKRDGDNCQRCRRP
                     LRFELPSGHDQAPRFYELAPASGEGLLPPIERQVLVHVRCNAAGADNTAEVTERVRRK
                     TEAALFSKNRKRA"
     gene            1623..2030
                     /locus_tag="VE968_08790"
     CDS             1623..2030
                     /locus_tag="VE968_08790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51953.1"
                     /translation="MEKRPVSLTVIAVILIIFTVLGVIGLATMGSNPAAMKMVAQMHM
                     SIAVEQAWGALGAIVNLVCAYGILKGLPWSRVLYVVWGIIGIVVGFYISPMKAMLVIS
                     LIILVVFAALLWTNNANDWFSARGFMLTRERRR"
     gene            complement(2320..3384)
                     /locus_tag="VE968_08795"
     CDS             complement(2320..3384)
                     /locus_tag="VE968_08795"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004209931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009263 - deoxyribonucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HZU51954.1"
                     /translation="MPLLQASKSYKPFEYPWAFEFWKRQQQLHWLPEEVPLGEDCRDW
                     AQKLSDHERNLLTQIFRFFTQADVEVQDCYHDKYGRVFKPTEVKMMLTAFSNMETVHI
                     AAYSHLLDTIGMPESEYSAFLQYKEMKDKHDYLSTFGVDTDEDIAKTLAMFGGFTEGL
                     QLFASFAMLMNFPRFNKMKGMGQIVSWSVRDESLHCEGIIKLFHTFVKERDCLTKQVK
                     DDILDQCHKTVRLEDAFIDLAFEMGPVNGMSPKEIKKYIRYIADWRLGQLGFAPIYMV
                     DEHPLPWLAPLLNGVEHANFFETRATEYSKAATRGNWNEVWDNFDRRMKAKADAAAND
                     GAAVVADGPDMFEAAGVAAE"
     gene            complement(3492..3758)
                     /locus_tag="VE968_08800"
     CDS             complement(3492..3758)
                     /locus_tag="VE968_08800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007166025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51955.1"
                     /translation="MNLPSCIHNACVATQATHTVAADAPGFWAGLWHGLIFPLAWVVS
                     LFTNSVAVYAVPNDGGWYNFGYFLGIVVFGVGAKRSHTVYRERR"
     gene            complement(3755..3973)
                     /locus_tag="VE968_08805"
     CDS             complement(3755..3973)
                     /locus_tag="VE968_08805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51956.1"
                     /translation="MMTAFVIIGVIAALCGASFVFAAIRRGPDAAPGNMVMLIGGMML
                     TAFGIVIAGFAIVYSNTAPLNLNAGAAR"
     gene            complement(3970..4191)
                     /locus_tag="VE968_08810"
     CDS             complement(3970..4191)
                     /locus_tag="VE968_08810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51957.1"
                     /translation="MTSGRMIELALAVLVLAAGVIFYARKPSDGNSYGNQGAVILVVI
                     ALIMGIHALGGLDYHPTQAEADAMQGHAR"
     gene            complement(4188..>5080)
                     /locus_tag="VE968_08815"
     CDS             complement(4188..>5080)
                     /locus_tag="VE968_08815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transferrin receptor-like dimerization
                     domain-containing protein"
                     /protein_id="HZU51958.1"
                     /translation="AQRGRAGILAGAYMGTAREDADLVDAAKAGGDMPLGALGSGSDY
                     TAFLQHLGIASMNLGFGGENESAGSYHSVYDSFYHVMHFDDPGLQYGAALSKVVGRLV
                     LRAADAPRVPARYSDLATTVARYLTEIKKLAADQREKDRTLANLRREGDFRLASSPTD
                     PIVAPVDRGVTPLIDMLPLENAVDHLKRSASAADAMLGREENLPPATQARINADLAQI
                     DQLLLDPQGLPGRPWFENLVYAPGTLTGYGAKTLPGVREAIEQRRWDDARAYVVRTAK
                     VLEDYANRLDSVTAMARTPS"
BASE COUNT         1026 a         1548 c         1540 g          966 t
ORIGIN      
        1 cggaccagcc ccggcaactg ctccggtgcc cgccccttct cccgaaccgc agcgcgaatg
       61 cacaaaccag aacaaggacc ccaacggcaa tgagatcgtc gtctgcgcga tcaagcccga
      121 gggctatcgc ttgccgcccg acatcgtcga agcgcgtcgg ctgaagaaag aggggatcac
      181 tgttcgtccg cgcaatccgc acgagaccta tgcaacgcac gattgcgcgc gcgttggccc
      241 gatgggctgc cttggtacgc ccacgatcaa catgatggcc gtcgccgcga ccgccgcgga
      301 gattacaaaa cggatgcaag agggcaagga cgtcggcagt gtcttcgaga ccgagaagag
      361 ctcgacggac taccagctct accaaatggc gaagaaagag cgtgaagaaa aggaagcggc
      421 cgccgcgatc aaggccgtta aggacaaggc gaaggctcaa cttgcggcga aggccgcggc
      481 cgacaaagcc gcttcgacaa gcgctgacgc ctcctcacca accaattaaa aagggccggc
      541 ttttaggccg gcccttgctc aactatcctt gttgagacgc tcagcggcag cgcagccgat
      601 gactgtcaac gctgctcccg agcgccgcac cagcggcgcc cccaaggatc gttccaaggg
      661 tcgaggagcc accgagcctt agcgaattgc cgaccaccgc tccaattgcg gcgccaacga
      721 caagcccagt gcttccgtcc cgccgacggc aatagaaacg tccgtcgcgg ccgcggtaga
      781 tgcggtcacc gcggctcatc acatactcag gtcccggacg ataatatcgg tcggcgtaat
      841 agggactgtg gcctggttcg gggttattgt aatcgtaggc ccggacacgg ttccaatcgc
      901 cgttgtaacg ctgcgccatg gccgcgccgg gcattatcgc gaccgacgcc gcgctcatgg
      961 caaggatgag cttcttcatt ctttattgct ccttcgtttg agagctggaa cggtcgcgct
     1021 tgcgctaagg ttccgatcgc gcgggccgct ggcaccgaca tgaacttttc acgtggatcg
     1081 ctcatgcctc agcaaggccg cggtaatttc ttcgcgctat aagacgacgc atgcagcgca
     1141 gcgcgagcct ttcgaaatat ctcaacccat ggaagttccg acgcgaggaa gccgcgcgcc
     1201 agcagcgcgt ggcggactta cggaagcgcg acggtgacaa ttgccagcgc tgccggcgcc
     1261 cgcttcggtt cgagcttcca agcggtcacg accaggcacc gcgattctac gagctcgcgc
     1321 ccgcaagtgg cgaaggtctc ttgcccccaa tcgaacgaca ggtcctcgtt catgtgcgct
     1381 gcaatgccgc tggagcggac aacaccgccg aagtgaccga gcgcgttcgc cggaagaccg
     1441 aagccgcgct cttctcgaag aatcgcaagc gagcctagtt caagcgcgat ggttggaagg
     1501 ttgagagctt ggagctctca aggccgcgcg tgaaacgcca aaagcgcgat tcgattcgac
     1561 agactgctgt tgtgcttacc ctcgcccgcg ctagtcttga gccagcaaaa ggggaaaatc
     1621 gaatggaaaa gcgcccggtt tcgttgacgg tcatcgccgt catcctgatc atattcaccg
     1681 tgctcggcgt tatcggcctt gcaaccatgg gttcgaaccc ggcagcaatg aagatggtcg
     1741 cgcagatgca tatgtcgatt gcggtcgagc aggcatgggg cgcgcttggt gcaatcgtta
     1801 acctcgtgtg cgcttatggg atcctcaagg gattgccctg gtcgcgcgtt ctctacgtcg
     1861 tgtggggcat catcgggatt gtcgtcggct tctacatttc gccaatgaag gcgatgctcg
     1921 tgatcagcct gatcatcctc gttgtctttg ccgccctcct ctggacaaac aatgccaacg
     1981 actggttttc ggcgcgtggc ttcatgctga cgcgggaacg gcggcgctga cagggagcct
     2041 tggttcccca gccaccccgc cggctgctca tcggcgggcg cacccgcgtc gggccggcca
     2101 actttcgtcc acggctgttc atttaacgcc gtttgaggcg cagcgagcga ccggcgggat
     2161 atttaacagg atcaagtaac gcacatcagc ttgcgctcga aaatgcctgt tagaagggct
     2221 gcacccgctt tccttgccca agtgaaagcg gggggcggtc cggcgttcaa acccagatca
     2281 ccggaccgca accaatgcga agcgaaccgc tgaagagctt tactctgcag cgacgccggc
     2341 agcttcgaac atgtctgggc cgtcggcgac gacggccgcg ccgtcatttg ccgcagcatc
     2401 ggccttggcc ttcatccggc gatcaaaatt gtcccagacc tcgttccagt ttccgcgtgt
     2461 cgccgccttg gaatattcgg tcgcacgcgt ttcgaagaaa ttcgcgtgct cgacaccatt
     2521 gagaagcggt gcaagccagg gaagcgggtg ctcgtcgacc atgtagatgg gcgcaaagcc
     2581 gagctgcccc aggcgccagt cggcaatata gcgaatatac ttcttgatct ccttcgggct
     2641 catgccgttc accgggccca tctcgaacgc gagatcaatg aatgcgtcct ccagccgaac
     2701 cgtcttgtgg cactggtcga ggatgtcgtc cttcacctgc ttggtaaggc agtcgcgttc
     2761 cttcacgaac gtatggaaga gcttgataat gccttcgcag tgaaggctct catcccgcac
     2821 cgaccagctt acgatctgcc ccatgccctt catcttgttg aaccgcggga agttcatcag
     2881 catcgcgaag ctcgcgaata gctggagccc ttcggtaaag ccgccgaaca tggcgagcgt
     2941 ctttgcaata tcctcgtccg tatcgacgcc gaaggtcgag agatagtcgt gcttgtcctt
     3001 catctccttg tactggagaa aggccgaata ttcgctctcg ggcatgccga tcgtgtcgag
     3061 gaggtggctg taagccgcga tatgaaccgt ctccatgttg gagaacgcgg tcagcatcat
     3121 cttgacttcg gtcggcttga acacgcggcc gtacttgtcg tgatagcagt cctgcacctc
     3181 gacgtcggcc tgcgtgaaga aacggaagat ctgcgtcaga aggttgcgtt cgtgatccga
     3241 gagcttctgc gcccagtcgc gacaatcttc gccgagcggc acttcctcgg ggagccagtg
     3301 cagctgctgt tgccgcttcc agaattcgaa agcccaggga tattcgaacg gcttgtagga
     3361 cttcgatgct tggagaagtg gcatctttag gctccttcga aactggaaat atggggtcga
     3421 tcactgccgc gcgcaccgta tgcggaccgc gcatcgacgt atcggtttgt cgggtgctgc
     3481 cggatcattg ttcagcgccg ctcccggtag acggtgtggc ttcgcttcgc gccgacaccg
     3541 aagacgacga tcccaaggaa atagccgaaa ttgtaccagc caccgtcgtt cggcacggca
     3601 tagaccgcga cgctgttcgt gaagagcgac acgacccatg caagcggaaa gatgaggcca
     3661 tgccacaggc cggcccaaaa tccgggagcg tcggccgcca ccgtgtgcgt cgcctgggtc
     3721 gcgacgcaag cattatggat gcacgacggg agattcatcg cgccgctccc gcgttaagat
     3781 tgagcggcgc ggtgttgctg tagacgatcg caaatcccgc gataacgatc ccgaacgcgg
     3841 tcagcatcat tccgccgatc aacattacca tgttgccggg ggcggcatca ggtccgcggc
     3901 ggattgccgc gaagacgaac gaggcgccgc aaagagcggc gatcacgcct atgatcacga
     3961 atgccgtcat catcgcgcgt ggccttgcat tgcgtccgct tccgcctggg ttggatggta
     4021 gtcgagacca ccgagcgcat ggatgcccat gatgagtgcg atgacgacga ggatgaccgc
     4081 gccctggttg ccgtagctgt taccgtccga cggcttgcgg gcgtagaata ttacgcctgc
     4141 tgcaaggacg aggaccgcta gggcgagctc gatcatccgg ccacttgtca cgacggcgtt
     4201 ctcgccattg ccgtgacgct atcgagacga ttggcataat cctcgagcac ctttgccgtg
     4261 cgcacgacat aggccctggc atcgtcccag cgacgctgct cgatggcctc gcggacgccc
     4321 ggcagggtct tggcaccata accggtaaga gtccccggcg cgtagacgag attctcgaac
     4381 caggggcgac caggaaggcc ctgcggatca agaaggagct ggtcgatctg ggcgagatcg
     4441 gcgttgatcc gcgcctgtgt tgccggcgga agattctctt cgcggccaag catcgcgtcg
     4501 gcggctgaag cggagcgctt caaatggtcg acggcattct cgagcgggag catgtcgatg
     4561 agcggcgtga cgccacggtc aaccggcgcg acaatcgggt cggtgggtga gcttgcgagc
     4621 cggaagtcgc cctcgcgacg gaggttggca agcgtgcggt ccttctcgcg ctgatcggcg
     4681 gcaagcttct tgatctccgt aaggtagcgc gcaacggtcg ttgctaagtc gctgtagcgc
     4741 gccggcactc gcggtgcatc ggcagcacga agaacgagtc ggccaacgac cttcgacaag
     4801 gctgcgccat attggagacc cggatcgtca aaatgcatca cgtggtagaa gctgtcgtag
     4861 accgaatgat agcttccggc gctttcgttc tcaccgccaa agccgaggtt catcgaagca
     4921 atcccgagat gctgcaggaa cgccgtatag tccgaacctg aacccaaggc gccgagcggc
     4981 atgtcaccgc ccgcctttgc tgcgtcgacg aggtcggcat cttcgcgagc cgtccccata
     5041 taggcaccag cgaggatccc ggcccggccg cgctgcgcaa
//
LOCUS       DASRBJ010000317         3342 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_141496,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000317 DASRBJ010000000
VERSION     DASRBJ010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3342
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141496"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..223
                     /locus_tag="VE968_08820"
     CDS             <1..223
                     /locus_tag="VE968_08820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004208955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51959.1"
                     /translation="SARGDEERIRAAGAQAYVSKPISVVRFAQTVDDLLSGHRDTNGN
                     LGTNEREKPESSAISRGAANPDEGDASRK"
     gene            complement(286..453)
                     /gene="rpmG"
                     /locus_tag="VE968_08825"
     CDS             complement(286..453)
                     /gene="rpmG"
                     /locus_tag="VE968_08825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011454349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HZU51960.1"
                     /translation="MAKPATVKIKLVSSADTGFFYVTKKNPRTKTEKLSFKKYDPVAR
                     KHVEFKEAKIK"
     gene            608..916
                     /locus_tag="VE968_08830"
     CDS             608..916
                     /locus_tag="VE968_08830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51961.1"
                     /translation="MPADALAMIRKQVALRIDEIRATAVSLSPLDLHAKMDAIRELAA
                     ANGLAALEGLARSTAQRALLPGHRIAMQSCLEHVEEALDSVSEKDCTTILAALAIRLH
                     "
     gene            950..2551
                     /locus_tag="VE968_08835"
     CDS             950..2551
                     /locus_tag="VE968_08835"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cisplatin damage response ATP-dependent DNA
                     ligase"
                     /protein_id="HZU51962.1"
                     /translation="MRAFSQLLDDLVYTRSRNTKLKLIGDYLKQTPDPDRGLALAALT
                     GTLSLPHVKPAAIRAIVEERVDPVLYYMSRDYVGDSAETIALLWPKSNDDPPDIDDAT
                     LSISTAVERLRSASRLDAPMALASMLDHLDSSGRYALLKLAFGELRVGVNARLAKQAF
                     ALAFGLDVEAVEEVWHGLSPPYRELFDWAEGRAPQPIARDIPVFRPFMLAHPLEDTKV
                     SLDEYAAEWKWDGIRVQLVHAGGQTRLYSRTGDDISKSFPDIADCFRSAGVLDGELLV
                     RGSEQGITELHGGAAASFNVLQQRLGRTKVSAKMLNAFPAFVRLYDILFDGDEDLRDR
                     SWEERRQRLEIFATRLDPHRFDLSQLIDARTFEELEDLRLNARDASIEGIMLKRRNSS
                     YVAGRRTGLWYKWKRDPLTADCVLMYAQRGSGKRSSYYSDYTFGAWTEAGELLPVGKA
                     YFGFTDEELKWLDRWIRGHTVDRFGPVREVEKSLVLEVAFDSIHKSGRHKSGLAMRFP
                     RISRIRTDKPASEADHLQTLLSLVT"
     gene            2601..>3342
                     /locus_tag="VE968_08840"
     CDS             2601..>3342
                     /locus_tag="VE968_08840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HZU51963.1"
                     /translation="MFKALLAGTAVLAVATVANADTYAIQAGHLIVDAAQPERTNSTV
                     IVVDGRIARIEPGFTAPAGATVVDERTMTVMPGMTDVHVHLTSTSGEPWYNRFTKKYS
                     VPYNTTVGLTHALEMARGGFTTVRDLGGNTSAVIAVRDAVAEGRFPGPRIRVAGQPLS
                     IIGGHADEATGLPPELADAIFEAHLNPSVCTGAEECQKVVRQLAAAGVDWIKIMATGG
                     VLDPGTRGLDQHFTDEEMKAICDMAHFMG"
BASE COUNT          687 a         1004 c          968 g          683 t
ORIGIN      
        1 ttcggcccgc ggtgatgagg aaaggattcg cgctgccgga gcgcaagcct atgtgtcaaa
       61 gcctatttcc gtggtccgct tcgcgcaaac cgtcgacgac ctcctcagcg gccatcgaga
      121 caccaatggc aatcttggga cgaacgaacg ggaaaagccc gaaagctccg caatttctcg
      181 gggcgccgct aatcctgacg agggagacgc ttcacgaaag tagggcaagt cgtcgcctca
      241 gcgagccgtc gccgtattcg agacggccgc ccagggcccc aaaagctact tgatctttgc
      301 ttctttaaat tcgacgtgct tgcgcgcgac cggatcatat ttcttgaagc ttaacttctc
      361 cgtcttcgtg cgcgggttct tcttcgtaac gtaaaagaag cctgtgtcgg cactgctgac
      421 gagcttgatc ttgacggttg ccggcttggc cattggatcg atcccgattg caaaagaaaa
      481 aagcggccac cgccgctcca aatcgctcgc tgcaatgacg aacgcgaccg attctgtcaa
      541 ccgaaacggg catgtaacca gctcttaacc ttcttgggtg aatctgcgtt catccaagga
      601 gcccttcatg ccggctgacg cactcgctat gatccggaag caagtcgcac tgcgcattga
      661 cgaaattcgg gccactgccg ttagtctctc gcctctcgat cttcatgcaa aaatggacgc
      721 gatccgcgaa cttgcggccg cgaacgggct tgccgcgctt gaaggactag cgcgctcgac
      781 cgcccagcga gcgcttcttc ccggccaccg aattgccatg caatcgtgcc tcgaacatgt
      841 cgaggaagca ctcgatagcg tctcggaaaa ggactgcacg acgatccttg ccgcactcgc
      901 gatccgactg cactgacacc caacccggac ttcgtgcatt agtggcggga tgcgcgcctt
      961 ctcgcagctt ctcgacgatc tcgtatacac gcgctcgcgc aatacgaagc tgaagctcat
     1021 cggtgactac ctgaagcaga ctcccgatcc cgaccggggt ctcgcacttg ctgcacttac
     1081 cgggacgctg agcctcccgc acgtcaaacc ggcagcgatt cgcgccattg tcgaagaacg
     1141 cgtcgatcct gtgctctact acatgagccg tgactatgtc ggcgacagcg cggagacgat
     1201 tgctctgctt tggccgaagt cgaacgacga tcctcctgat atcgatgatg cgacgcttag
     1261 cattagtacg gctgtcgagc gcctgcggtc cgcctcgcgc ctcgatgcgc cgatggccct
     1321 cgcttcgatg ctcgaccatc tcgactcatc cgggcgctat gcccttctca aacttgcatt
     1381 cggggagttg cgcgtaggag tgaacgcacg cctcgccaag caggcgttcg ccctcgcctt
     1441 tgggcttgac gtcgaggcgg tcgaagaggt ctggcatggc ctttctcctc cttaccggga
     1501 actgttcgac tgggcggaag ggcgtgcacc gcagccgatc gcgcgcgata tcccggtctt
     1561 ccgcccgttc atgctcgccc acccactcga ggacacgaag gtttcactcg atgaatatgc
     1621 ggcggaatgg aaatgggatg gcatccgtgt ccaactcgtt catgccggag ggcagacgcg
     1681 cctctatagc cgcactggtg atgatatttc gaagagcttc ccggacattg cagactgctt
     1741 tcgttcggcc ggggtgctcg acggcgaatt acttgtgcgc ggttccgagc aagggataac
     1801 cgagctccac ggcggggcgg cagcaagctt caacgttctt cagcagcggc tcgggcggac
     1861 gaaggtcagt gccaagatgt tgaacgcctt cccagcgttc gtgcgacttt acgacatatt
     1921 gtttgatggc gatgaggatt tgcgcgatcg cagctgggaa gaaaggcgtc aaaggctcga
     1981 aatcttcgcc actcgccttg atcctcaccg tttcgacctg tctcagctga tcgatgcccg
     2041 gacattcgag gagcttgaag accttcgctt gaacgcgcgc gatgcttcga tcgaagggat
     2101 catgctcaag cgtcgaaaca gtagctatgt cgccggacga agaaccggct tgtggtacaa
     2161 atggaagcgc gatccgctga ccgcagactg cgtgttgatg tacgcgcagc gaggttccgg
     2221 aaaaagatcg agctattaca gcgactatac gttcggcgcg tggaccgaag ctggcgaact
     2281 actccccgtc gggaaagcct atttcggctt caccgatgag gagctcaagt ggcttgatcg
     2341 atggatacga gggcacaccg tcgatcgatt cgggcccgtt cgcgaggtcg agaagagcct
     2401 cgtcctcgaa gtggcattcg attcgataca caaaagcggt cgacacaagt ccggtcttgc
     2461 aatgcgtttt ccccgcatca gccgcatccg cactgataag ccggccagtg aggccgacca
     2521 ccttcaaaca ttgctgtcac tggtaacttg aagcctccgc aaaggacgct aagcctacgc
     2581 ccctcttaga ggggattttc atgttcaaag ctttgcttgc cggcacggcg gtgctggccg
     2641 ttgcgactgt tgccaacgcg gatacgtacg ccatccaggc tggtcatctc atcgttgatg
     2701 ccgcacagcc ggagcgcacg aattcgacgg tcatcgtggt ggatgggcgc atcgcgcgga
     2761 ttgaaccggg gttcaccgct cctgcggggg cgacagtcgt cgacgaacgc accatgaccg
     2821 tcatgcctgg aatgacggac gttcacgttc acttgaccag cacgagcggc gaaccctggt
     2881 acaacaggtt caccaagaaa tattcagttc cgtacaatac gaccgtcggt ctcactcacg
     2941 ccctggaaat ggcgcgcggc gggttcacga cagttcgcga tcttgggggc aatacgagcg
     3001 ctgtgatcgc ggtccgcgac gcggtcgctg aaggaagatt ccccggacct aggatcaggg
     3061 ttgccggtca accgctgtcg atcatcggcg gtcacgccga cgaagcgaca ggtcttccac
     3121 ccgaactcgc cgatgccatc ttcgaagcgc acctcaatcc atcggtgtgc accggcgccg
     3181 aggaatgcca gaaggttgtg cggcagctcg ccgcggcagg ggtcgactgg atcaagatca
     3241 tggcaacggg tggcgtgctt gatcccggca ctcgtggctt ggatcagcac ttcaccgacg
     3301 aggaaatgaa ggcgatctgc gacatggccc atttcatggg cc
//
LOCUS       DASRBJ010000318         3563 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_443008,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000318 DASRBJ010000000
VERSION     DASRBJ010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3563
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443008"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..720
                     /locus_tag="VE968_08845"
     CDS             <1..720
                     /locus_tag="VE968_08845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009820762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HZU51964.1"
                     /translation="FVGKGVTFDTGGISIKPAAGMEAMKWDMGGAGAVAGAMKALALR
                     KAKANIVGICGLVENMPGGNAQRPGDVVTSMSGQTIEVINTDAEGRLVLADAVTFVQR
                     NFNPSTIIDLATLTGAILISLGHEWAGLFSNNEELAAKLQQAAEESGDKLWRMPLGDA
                     FDRLIDSPIADMKNVGPREGGSITAAQFIQRFIESGVRWAHIDMAGKAWSDKAATTYD
                     KGATGFGVRLLDQYVEDVLEQ"
     gene            732..1169
                     /locus_tag="VE968_08850"
     CDS             732..1169
                     /locus_tag="VE968_08850"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HZU51965.1"
                     /translation="MQIDFYQLGETPADQVIASIAEKVLAADGRLLIVANDETLLARL
                     DRRLWDEGPTSFLPHGVAGGADDARQPILLSTSTDAPNEARHLLIADGEWREAAVGFD
                     RGFYLFDATSLDDARRAWKLLAGREGIERRYWAREDGKWVQKS"
     gene            1246..1668
                     /gene="ndk"
                     /locus_tag="VE968_08855"
     CDS             1246..1668
                     /gene="ndk"
                     /locus_tag="VE968_08855"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HZU51966.1"
                     /translation="MATSRTFSIIKPDATRRNLTGAVTKMLEDAGLRVIASKRIRMSR
                     DQAEGFYAVHKERPFFDDLCTFMTSGPVVVQVLEGENAVARNREVMGATNPQQAADGT
                     IRKTFAESIEANSVHGSDSDENAAVEISYFFKPEEIVG"
     gene            complement(1673..3112)
                     /gene="cls"
                     /locus_tag="VE968_08860"
     CDS             complement(1673..3112)
                     /gene="cls"
                     /locus_tag="VE968_08860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003047857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008808 - cardiolipin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0032049 - cardiolipin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HZU51967.1"
                     /translation="MLPDLPLPAEVVLILAEVAVLVRVLLRPHREPASRLAWIIVVLA
                     VPLAGIIAYLILGETRISGGRREHGRNVDAQLPRPKGDPTCLSRLAGGPHQAPFELAR
                     TINHLDPTCANNARISEDSDSAIDEMIADIDAAHEHVHLCTYIWLADRNGIRMKDACC
                     RAARRGVQVRILADALGSRRFIRSHHWREMKEAGCHVLVALPVGNPLWTLIRGRVDLR
                     NHRKMAVIDNKIGWCGSQNIADPEFRIKARYAPWVDIMTRWQGPVAQHVQFLFVSDWI
                     AEGGDDISQLLKVTPTKPSDGAILAQIIGTGPTASFDAMPSCFSELIHSAREELVITT
                     PYFVPDEQLLFALTSAARRGVQTIMVLPKRCDSRFVAATSRSYYEDLLKAGVHLFEYG
                     HGMLHSKTMVVDRKIGLIGSANLDRRSFELNFENNILFADPSFAGAIRDRQDQYLGQS
                     EAVTSEDLARFGLLRRIVQNLLATMSPVL"
     gene            complement(3116..>3563)
                     /locus_tag="VE968_08865"
     CDS             complement(3116..>3563)
                     /locus_tag="VE968_08865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51968.1"
                     /translation="AALIVSATGVWIAWKNSNDDKPARVVEQRSSIPLALRGTAQSEG
                     RELDIIAADPSHGLESLKFTIRGAAPIDVGSDGKLLASDVEAALKGREKEAKDVALHL
                     PVHIDAYYVESGVDRHGGGNYVLRYKWQGGGLFGGRSLRLLGLSRG"
BASE COUNT          747 a         1040 c         1106 g          670 t
ORIGIN      
        1 ttcgtcggca agggggtgac cttcgacacg ggcgggattt cgatcaagcc cgcggcaggc
       61 atggaagcca tgaagtggga catgggcggg gcgggcgccg ttgccggcgc gatgaaagca
      121 ctcgctttac gcaaggccaa ggcaaacatc gtggggatct gcgggcttgt agaaaacatg
      181 ccaggcggca atgcgcaacg cccgggcgat gtcgttacga gcatgtccgg ccagaccatc
      241 gaggtcatca ataccgacgc cgagggccgg ctggtgcttg ctgacgcggt caccttcgtc
      301 caacgcaatt tcaatccgtc gacgataatc gacctcgcga cactgaccgg tgcaatcctc
      361 atcagccttg gtcatgaatg ggccggcttg ttctcaaaca acgaggagct tgcggccaag
      421 ctccagcaag cagccgagga atccggcgac aaactgtggc ggatgccgct tggtgatgca
      481 ttcgaccgac tgatcgattc gccaatcgcc gacatgaaga acgtcggacc gcgcgagggc
      541 gggtcgatca cggcagccca gttcatccag cgcttcatcg agagtggtgt ccggtgggcg
      601 catatcgaca tggcgggcaa ggcctggtca gacaaagcgg cgacgaccta cgacaaaggc
      661 gcaaccggat ttggcgtgcg cttgctcgat caatatgtcg aagacgtgct ggagcagtga
      721 atcgctagaa cgtgcagatc gacttctacc agcttggaga aacgccggct gaccaggtga
      781 ttgcaagcat agcggaaaaa gtccttgccg cggacggtcg gctcctgatc gttgccaacg
      841 acgagacgct tcttgcaaga cttgaccggc gcttgtggga tgaaggacca acgagcttcc
      901 ttccgcacgg cgtcgccggt ggtgcggacg acgcgcgcca gccgatcctc ctttcgacga
      961 gtaccgatgc gccgaacgag gcgcggcacc tgttgattgc ggacggggag tggcgggagg
     1021 ccgcggtcgg ctttgaccgc ggtttctacc ttttcgacgc cacttcgctc gacgatgctc
     1081 gtcgcgcctg gaaacttctt gccggaaggg aagggatcga gaggcgctac tgggctcgcg
     1141 aagacggcaa gtgggtgcaa aagagctgac tattgccgca gcgcgccttg cccgctaggc
     1201 ggcgcaccaa tcccatttct ctcaataata ggagttcgcc cgatcatggc gacgagccgt
     1261 actttttcga tcatcaagcc cgacgcgacg cgccggaacc tcaccggcgc ggttaccaag
     1321 atgcttgagg acgccgggct tcgcgtgatt gcatcgaagc gcattcggat gagccgtgat
     1381 caagctgaag gcttttacgc tgtccacaag gaacgcccgt ttttcgacga cttgtgcacg
     1441 ttcatgacgt ccggtcctgt cgtcgttcaa gtacttgagg gcgagaatgc ggtcgctcgc
     1501 aaccgcgaag tgatgggcgc cacgaacccg caacaggccg cagacggcac catccgcaag
     1561 accttcgcgg aatcgattga agccaattcg gtgcacggtt ccgacagcga cgagaatgcc
     1621 gctgttgaaa tcagctattt cttcaagccc gaagaaatcg tcggctagct cgttaaagaa
     1681 ccgggctcat cgttgcgagc aggttctgga cgattcggcg aaggagcccg aaacgagcaa
     1741 gatcctcgct cgtgacggcc tctgattggc caagatactg atcttgacga tcgcgtatcg
     1801 cgccggcgaa cgacggatcg gcaaaaagga tattgttttc gaagttcagt tcgaagcttc
     1861 gccgatcgag attggcgctg ccaatgaggc cgatctttcg gtccaccacc atggtcttcg
     1921 aatgaagcat cccgtggccg tactcgaaca agtgaacgcc ggcttttagc aaatcctcgt
     1981 aatagctccg cgacgtcgcc gcgacgaacc ggctgtcgca gcgtttgggg agcaccatga
     2041 tcgtttgaac gccgcgccgg gccgccgacg tgagtgcaaa gagcagttgc tcgtcgggta
     2101 cgaaataagg cgtcgtaatg acaagctctt cgcgtgcgga atggatcagt tcggaaaagc
     2161 aggaaggcat tgcatcgaag ctcgccgtcg gaccggtccc gataatctgc gcaagaatgg
     2221 cgccgtcgga cggcttggtc ggcgtgactt tcagcaattg gctgatgtcg tctcctcctt
     2281 cagcgatcca gtcggagacg aagagaaatt gcacgtgctg ggcaacaggg ccctgccatc
     2341 gcgtcatgat gtcgacccaa ggcgcataac gcgccttgat gcggaattcg gggtccgcaa
     2401 tgttctggct gccacaccag ccgatcttgt tgtcgataac cgccattttt cgatggttgc
     2461 gaaggtcgac gcgtccgcgg atcaacgtcc agagaggatt accaaccggc agcgcgacga
     2521 gcacatgaca tcccgcctcc ttcatctcgc gccagtggtg cgatcggata aaccgtcgtg
     2581 aaccaagcgc atcagcgagg atccgaactt ggactccgcg tcgcgccgcc cggcagcacg
     2641 cgtccttcat cctgatgccg ttgcgatcgg ccaaccagat ataggtgcaa agatggacgt
     2701 gctcgtgcgc agcgtcgatg tccgcaatca tctcgtcaat ggcactgtcg ctgtcttccg
     2761 agatccgggc gttatttgcg caggtcggat cgaggtgatt gatggttcga gcaagctcga
     2821 acggcgcctg gtgtgggccg cccgcgaggc gactgaggca agtcggatca cccttcggcc
     2881 gtggtagctg agcatcgaca ttgcggccgt gctcgcggcg gccgccgctg attcgcgtct
     2941 cgccaaggat cagataggcg atgatcccgg ccaacggcac cgcgagaacg acgataatcc
     3001 aagcgagtcg ggaagcgggc tcacggtggg gccgaaggag aacgcgaacc aggaccgcga
     3061 cctcggcgag aatcagcacg acctcggccg ggagcggcaa gtccggaagc aagcttcagc
     3121 ctctactcaa gccgagaagg cgaagagagc ggcctccgaa caagcctccg ccctgccact
     3181 tgtaacggag cacgtaatta ccgccgccat ggcgatcgac gccggattcg acataatagg
     3241 catcgatgtg gacgggcagg tgaagcgcaa cgtccttggc ttccttttcg cgccccttga
     3301 gagctgcttc cacatcgctc gcaaggagct ttccatcgct cccgacgtcg atcggtgccg
     3361 caccccgaat tgtgaacttc agcgattcga gcccatgtga cgggtcggca gctattatgt
     3421 cgagttcgcg cccctcggac tgagcggtgc cgcgaagcgc gagcgggatc gaggagcgtt
     3481 gctcgacgac acgtgccggc ttgtcatcgt tgctgttttt ccaggcgatc cagacacccg
     3541 ttgccgagac gataagcgct gca
//
LOCUS       DASRBJ010000319         3513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_101320,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000319 DASRBJ010000000
VERSION     DASRBJ010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3513
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101320"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..810
                     /locus_tag="VE968_08870"
     CDS             <1..810
                     /locus_tag="VE968_08870"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HZU51969.1"
                     /translation="LLERLYPYLGRSPVRQQAMARQFFGRNISAYDAPGFAHDTRWRT
                     TSVIKRLFSADMRAALAGRDAVSELLDRLPPEFSRWSSLAQDQYLEMHTLLSGYLLSS
                     QGDRMLMAHSVEGRFPFLDEDVVALANSLPAAYKLRVLDEKHVLKRVAQPIVPSEIVA
                     RKKQPYRAPNARCFFGRDAPAYVEEALSDRAIRETNIFDPALIAHLRSKCTAQAQRDD
                     GDLSNTDNMALIGVLSTQLLHEQLLSAAPAVGPLAQLRVDVDCAHRAEALA"
     gene            810..2363
                     /locus_tag="VE968_08875"
     CDS             810..2363
                     /locus_tag="VE968_08875"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HZU51970.1"
                     /translation="MHGPVPLLHDYLIHSAQQFGGKVALVCGDQRVAYREIDAQSNAL
                     AHHLAAAGVARGDRVMIFADNSVETVISFWAALKANAVVCIVNPLTKAGKLDYLLKDC
                     RPAAFITDKRLHSVYNEPVLNCPSLRRVIVSGPIDDPDLAELPHAVRWSAAVAGPSSE
                     PPARRCIDIDLAAIVYTSGSTGDAKGVMLTHRNMLTACTSIAAYLGVREDDVILNVLP
                     LAFDYGLYQMIMAFRMGARLVLERSFAFPAQILRRVAEERITGFPGVPTIFSTLFGLE
                     SLKEFDLSSIRYVTNTGAALPVKHLAALQQVFPHARIFSMYGLTECKRCTYLPPDDLN
                     RKPSSVGIAIPNTEMWIVDEADQRVGPGVVGQLVIRGATVMKGYWGKPEATARRLKPG
                     PLPGEQVLYTGDYCWMDEEGYLYFVGRSDEIIKSRGEKVAPKEVENVLMNLPGVKEAA
                     VIGIPDELLGQAIKAFVVAEQGTTISEKQLQRECQGQLENFMVPKSIVIVSSLPRTET
                     GKLNKRALS"
     gene            2404..2670
                     /locus_tag="VE968_08880"
     CDS             2404..2670
                     /locus_tag="VE968_08880"
                     /inference="COORDINATES: protein motif:HMM:NF012759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000036 - acyl carrier activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HZU51971.1"
                     /translation="MAPIPATHDIYSQQIRDFLVSNFYISKGVVLDDDTSLLDEGIID
                     STGVLEVVSFLEETFGIKVDDTELLPENLNSIRGMTHYLSRKKG"
     gene            complement(2743..2970)
                     /locus_tag="VE968_08885"
     CDS             complement(2743..2970)
                     /locus_tag="VE968_08885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51972.1"
                     /translation="MYITDERKQLRELTWSVIGKSTFEKWKAEERRIEERIAAQRKAR
                     LAQQGTPPMPSNPESEFVRNPRFAKPYFAQE"
BASE COUNT          701 a         1055 c         1031 g          726 t
ORIGIN      
        1 ctactggagc ggctctatcc ttatctcggc cgctcgccgg ttcggcagca ggcaatggcc
       61 cgtcagtttt tcggacgcaa tatctcggcc tatgacgcgc ccggctttgc gcacgatacg
      121 cgctggcgca cgacgagcgt catcaagcgg ctgttctccg cagacatgcg cgctgcattg
      181 gcggggcggg atgcggtatc cgagttgctc gaccgcctgc cgcccgaatt ttcgcgctgg
      241 agctcgctgg cgcaggatca gtatctcgag atgcacacgc tgctatcggg ctacctgttg
      301 tcctcgcagg gagacagaat gctcatggcg cactcggtcg agggccgctt cccatttctc
      361 gacgaggatg tcgtcgcgct cgcgaattcc cttcccgctg catacaagct ccgcgttctc
      421 gacgagaaac atgttctaaa gcgcgtggcc caaccgatcg tgccatccga aatcgtcgct
      481 cgcaagaagc agccgtaccg ggctccgaac gcgcggtgct tcttcgggcg cgacgcaccg
      541 gcctatgtcg aggaagccct ctcagaccgg gcgattcgcg agacgaacat ttttgatccg
      601 gcgctgatcg cgcatctacg cagcaagtgt acggctcagg cgcagaggga cgatggcgat
      661 ctatcgaata ccgacaacat ggctctgatc ggggtgctgt cgacccaact ccttcacgaa
      721 caacttctgt cagcggctcc tgctgtaggc ccgctggcgc aattgcgtgt cgacgtcgat
      781 tgcgcgcatc gggcggaggc tctcgcataa tgcacggccc tgtaccgctt ctgcacgact
      841 acctcatcca ctccgcgcag caattcggcg gcaaggtcgc gctcgtatgc ggcgaccagc
      901 gcgtcgccta ccgggaaatc gacgcgcaat ccaacgcgct cgcgcatcac ttggcggcgg
      961 ctggagtagc gcgcggagac cgcgtcatga tcttcgccga caacagcgtc gagacggtga
     1021 tcagcttctg ggcggcgctc aaggcgaatg ccgtcgtctg tatcgtgaac ccgctaacga
     1081 aagccggcaa actcgattat cttctcaaag attgccgtcc ggcggcattc atcaccgaca
     1141 agcgactgca ctccgtatac aacgagcccg tactaaactg tccgtcgttg cgccgggtga
     1201 tcgtgtctgg gccgatcgac gacccggacc tcgcagaatt gccccacgcg gtccgatgga
     1261 gcgcggcagt tgcaggtcct tccagtgagc cgccggcgcg gcgctgcatc gacatcgatc
     1321 tcgcggcgat cgtgtacacc tccggatcaa cgggggacgc gaaaggcgtc atgctgacgc
     1381 acaggaatat gcttaccgca tgcacgtcga tcgcagcata tctcggtgtg cgcgaagacg
     1441 atgttatttt gaacgtgttg ccgctcgcct ttgattatgg gctctaccaa atgatcatgg
     1501 cgtttcgcat gggcgcccgg cttgtcctcg aacgctcgtt cgcttttcca gcacagattc
     1561 tccgacgcgt cgcagaggag aggatcacag gctttccggg ggtgccgacg attttttcga
     1621 cccttttcgg actggagtcg ctgaaggaat tcgacctttc gagcattcgg tacgtcacga
     1681 acacaggcgc cgcgctgccg gtaaagcatc tcgccgccct gcagcaggta tttccgcacg
     1741 cgcgcatctt ctcgatgtat ggccttaccg aatgcaagcg ctgcacttat ctgccgccgg
     1801 acgatctcaa tcgaaagcct tcgagcgtcg gcatcgcgat cccgaacacg gaaatgtgga
     1861 ttgtcgacga ggctgatcaa cgagtcggcc cgggcgttgt cgggcagctg gtgatccgcg
     1921 gggcgactgt gatgaagggg tactggggaa agccggaagc gacggcgaga cggctcaaac
     1981 ctggcccgct gccgggcgag caggtcttgt acactgggga ctactgctgg atggatgagg
     2041 agggctatct ctacttcgtt ggtcgcagcg acgaaatcat aaagtcacgc ggggagaagg
     2101 tggctcccaa ggaagtggag aacgtgttga tgaacctgcc cggggtcaaa gaagccgcgg
     2161 tgatcggcat tcccgacgaa cttctcgggc aggcgatcaa ggcctttgtg gtggcggagc
     2221 agggaacgac catcagcgag aagcagctcc aaagagaatg ccaaggccag ctggaaaatt
     2281 tcatggttcc gaaatcgatc gtcatcgtat caagcctgcc gagaacggaa acaggcaaac
     2341 tcaacaagcg ggctctgagc tagctcggcc ccctcgacga ttttcgcgaa ctggaggcac
     2401 acaatggcgc caatacctgc gacacacgac atctacagcc agcaaatccg cgattttctg
     2461 gtgtcgaatt tctacatatc taaaggcgtc gtcctcgatg acgatacgtc ccttctcgac
     2521 gagggcatta tcgattcgac aggcgtgctc gaggtcgtca gctttctcga ggagaccttc
     2581 ggcatcaagg tcgacgacac cgagctgctg cccgagaatc tcaattccat ccggggaatg
     2641 acgcactacc tgagccggaa gaaaggctga tcgcttagtc gacccgcttg gccgactcgc
     2701 gcaagccaca ggtctcgttc cgcaagctgc tagtctcgga tcctactcct gcgcgaaata
     2761 gggctttgca aatcgaggat tcctcacgaa ctcgctctcg ggattcgacg gcatgggagg
     2821 agttccttgc tgcgcaagcc gcgcctttcg ctgcgccgca atacgctcct ctatgcgcct
     2881 ttcttccgct ttccactttt cgaacgtcga cttgccgatc acgctccaag tgagctctcg
     2941 caactgcttc cgttcgtccg tgatatacat tgcagcctcc ccaagctgat gtcttagttg
     3001 ctgcattagc ttcgcagctt tataaaaaat ggcattttgc agacaaaatg tgagacactt
     3061 agcattcgta agtcaaatca taaccagagg agcgtcggct aacccgttcg gattactccg
     3121 atcgggctag cccggcgcga accgatgtga gtccggcgtt ggcaattgtg agagctacgg
     3181 ccgccgctct tgcggcttga ggcttgggtc aattacacca cagatcgagc gcgcttgttt
     3241 cagcaggcgg tcccggctgg cctcatatcc acccggtccc gggcgtcacg ttatagcggt
     3301 ggggggaatg atgccgccgc tgcactccgg cggacaaatg cggttccttg agccccacct
     3361 gagctccgcc agctgggccc aactctttcg atgtgctagg cggcagcgcg cagaccgggc
     3421 gaatgcgccc gtaatggccg gtggttggcg aatgttatga cgcttgcagt gcgatacttt
     3481 tgctcaccat caccgaaatc tggaaggtgg tgg
//
LOCUS       DASRBJ010000320         2083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_244923,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000320 DASRBJ010000000
VERSION     DASRBJ010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244923"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..520)
                     /locus_tag="VE968_08890"
     CDS             complement(<1..520)
                     /locus_tag="VE968_08890"
                     /inference="COORDINATES: protein motif:HMM:NF015823.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type transport auxiliary lipoprotein family
                     protein"
                     /protein_id="HZU51973.1"
                     /translation="MTVLTRTGFVLVLAAALGGCSIGGLLGGGKPPATLVTLTPEAAA
                     PELIARNATAGQSVTIETPTVPKELAFVRVPVQLTPTNVQYVANLQLVDTPDRLFQRL
                     LEETVRRTTSRVVLDPAQSALDPGIAVSGELQRFGYDASTGEVIVTYDAALSAPGSAG
                     VHTRRFTARAPAD"
     gene            complement(517..1470)
                     /locus_tag="VE968_08895"
     CDS             complement(517..1470)
                     /locus_tag="VE968_08895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HZU51974.1"
                     /translation="METRSNYVFVGAVTVALLIGVLLFIVWLAGIGNKTQKCYDIYFA
                     QGVGGLAKGSNVSFSGVQVGQVSKISLLPNRPEFVWVRIEVDDQTPVLQGTSAQVHDV
                     GFTGASQIQLAGAQRGRPPIDQIGPQGCPVIPATSGGISALLNSAPELIDRIQRLTER
                     LTELLSDKNQNSISDILENIDATTRVLRQRAPEMGDTLAEIKTASHNAGVAANNVAAL
                     SANANRLISDDGRPAMENLNKSLASVQQATDNLNSMIGDARPGVQTFSKSTLPEVNRL
                     VHDLRQLTQSLEAVSNRVNQQGIGGALGAPKLPDYNPGKRK"
     gene            complement(1470..>2083)
                     /locus_tag="VE968_08900"
     CDS             complement(1470..>2083)
                     /locus_tag="VE968_08900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HZU51975.1"
                     /translation="IDVLGENMVGRTEDEAKNIRRRWGILFQNGALFSTLTVAENVEV
                     PIREYFPFIRPPLLDEIASYKIAMGGLPPDAGPKYPSELSGGMIKRAGLARALALDPE
                     LLFLDEPTAGLDPIAAAAFDQLVKSLQQRLGLTVFLITHDLDTLHAVCDRVAVLADQH
                     VIAVGTIPQLLALDHPWIQEYFNGPRGRTAAQSYEEHEEGAQA"
BASE COUNT          393 a          621 c          649 g          420 t
ORIGIN      
        1 cgtcggctgg agcgcgtgcc gtgaaccggc gcgtatggac gccggcgctt cccggcgcgg
       61 acagtgcggc gtcataagtc acgatgacct cgcccgtcga cgcatcatag ccgaaacgct
      121 gcaattcccc gctgaccgct atgccgggat caagagccga ctgagcggga tcgagaacga
      181 cgcggcttgt cgtacgacgc accgtttcct caagcaaccg ctggaacagg cggtcgggcg
      241 tgtcgaccag ctggaggttc gcaacatatt gaacgttggt cggcgtgagc tggactggca
      301 ctcggacgaa cgccagctcc ttgggcacgg ttggggtctc gatggtcacc gactgcccgg
      361 ccgttgcgtt gcgcgcgatg agttccggcg ccgcggcttc tggggtcaga gtcacgagcg
      421 tcgctggagg ttttccgcca ccgagcagcc ctccgatcga gcagccgccc aaggcggccg
      481 cgaggacaag cacgaatccg gtcctcgtca gcacagtcat ttgcgttttc ctggattgta
      541 gtcgggcagc ttaggcgctc cgagggctcc gccgatgccc tgctggttta ctcggttcga
      601 caccgcctcg agcgattgcg tcaattgcct gaggtcatga acgaggcgat tgacctcggg
      661 aagcgtcgac ttgctgaaag tctggactcc cggccgcgca tcaccaatca tcgaattaag
      721 attgtcggtg gcttgctgaa ctgaagcaag cgacttgttg aggttctcca tcgccggccg
      781 gccgtcgtcg ctgatgagac ggttggcatt ggcggagagc gctgcgacat tgttcgcggc
      841 gacgcctgca ttgtgcgatg ccgttttgat ctcagcgagc gtgtcaccca tttccggagc
      901 gcgctggcga agtactcgtg tcgtcgcgtc gatattttca agaatgtccg agatcgaatt
      961 ctggttcttg tcgctaagca attccgtcag gcgctccgtc aggcgctgga tccgatcgat
     1021 gagctctggc gcgctattga gaagcgcgct gatgccgccc gaggttgctg gaatgaccgg
     1081 gcagccctgt ggtccgatct ggtcaatcgg gggacggccg cgctgcgcgc cggcgagctg
     1141 aatctggctc gctccagtaa agccaacgtc gtgaacctgc gcactggttc cctggagaac
     1201 cggggtttgg tcatcgacct cgatccgaac ccagacgaat tcgggccggt tgggaagaag
     1261 cgagatcttt gagacctgcc cgacctgaac gcccgaaaag cttacgttcg atcccttcgc
     1321 gagcccaccg acaccttgcg cgaagtagat gtcgtagcat ttttgagtct tgtttccgat
     1381 gccagcaagc cagacgatga agagcagcac gccgatgagc aacgccacgg tgacagcacc
     1441 gacaaataca tagttggacc gggtctccac tacgcctgcg ccccttcttc atgctcttca
     1501 tagctctggg ccgcagtgcg tccccgcgga ccgttgaaat actcttgtat ccaaggatgg
     1561 tccaaagcca atagttgcgg gatcgttcca actgcgatga catgctgatc ggcaagcacc
     1621 gccacccgat cgcagaccgc atgaagcgtg tcgaggtcgt gcgtgatcag gaaaacggtg
     1681 aggccaaggc gctgctgaag cgatttcaca agctggtcaa atgccgccgc cgcgattgga
     1741 tcgaggcccg cggtcggctc gtcgaggaac aggagttcgg ggtcgagtgc tagtgcacgg
     1801 gcaagtccgg cgcgcttgat catgccaccc gaaagctcgg acggatattt gggccccgcg
     1861 tctggcggaa gcccgcccat cgcaatcttg tacgaagcga tttcgtcgag gagcggcggc
     1921 ctgatgaacg ggaaatattc ccggatcggc acttcgacat tctcggcgac ggtcagtgtc
     1981 gagaacaacg cgccattctg gaataaaatg ccccagcgcc ggcggatgtt ctttgcttcg
     2041 tcctcggtcc tcccgaccat gttctcgccg agcacgtcga tct
//
LOCUS       DASRBJ010000321         4072 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_344427,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000321 DASRBJ010000000
VERSION     DASRBJ010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4072
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344427"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2491)
                     /locus_tag="VE968_08905"
     CDS             complement(<1..2491)
                     /locus_tag="VE968_08905"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HZU51976.1"
                     /translation="MRLALLTVIHSILVGALGLLCLAFPQPTFAASQSTIVVGMPLEP
                     PNLDPTAGAAAAVDEVVYQNIFEGLTRMTQSGSIEPALASGWTISPNLRVYIFKLRTN
                     VHFHDGSSMTAADVKFSLDRARAPGSANAQKALLEPLAGVDVLDRSTVRIRLSRPYAE
                     LLSVLAWGDMVIVSPRSAANNATHPIGTGPFRFDRWQRGTAIELSRYPAYWGKEPALT
                     QVTFKFFSDPTAAYTALRSGDVDAFTNYPAPENVGEFRADRNFVVTIGSTESKTILAI
                     NNAVPPLNNILVRRALSYAIDRKAIIQGAMFGLATPIGSHFSPGDPAYIDLTGFYPHD
                     PALARALLAKAGYPNGLDLVLRLPPRPYARRSGEMIAAQLAAVGVRVRIENMEWSQWL
                     DQVFGRHDFALTIVDHVEPMDYGIYGRPDYYFGYHSPTYNALLAKLDATMDAQQRKAI
                     LQQLQIQLARDAVNVFLFQQPRINIRRAGIEGLWANSPIAGTVMSGVTVIGRAGASSV
                     ASSGPKAGHSILVAMILMSFFAALGWMVAKLGLRGALRRLASFAATMVAATAIIFVIL
                     QIMPGDPARYMMGLNASPDAIGALHREMGLDAPAFQRYLQWVLGLLTGHFGTSYTYRV
                     DVGRLIADAITVSLPLALLATVLSLLIAFPFGILAAAKRRSAAGAAIMGVAQAGIALP
                     NFWLAMLLVLLVSIRLRWLPAGGFDGWDAGFWPALRALLLPAIALATPQAAILTRVLR
                     SALVETMHEDYVRSARAKGLSRGEALRRHALRNALIPVLSVLGLQIPFLLAGAIIIEN
                     VFTLPGLGRLVFQAITQRDLIVVQGVVVVLVF"
     gene            complement(2506..3822)
                     /locus_tag="VE968_08910"
     CDS             complement(2506..3822)
                     /locus_tag="VE968_08910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008068021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HZU51977.1"
                     /translation="MLNDWAPNTENFWMPFTDNRAFKKVPRLLVSASGMHYRDGANRS
                     ILDGTAGLWCVNAGHGREPIVEAIRREAAILDYSPTFQIGHPLAFKLAERLEQFFPPP
                     LDRLFFVNSGSEAVDSALKIAIAYQRSRGFPERSGLVGRRRGYHGVGFGGISVGGIEN
                     NRRGFPTLPRVRHLSDTIGPDHQPFTRGLPASGASLADQLEEIIDEDGAQTIAAVIVE
                     PVAGSAGVLIPPAGYLERLQAITAKHDILLIFDEVITGFGRLGAPTAAHFFNVIPDLM
                     TCAKGLTNGAVPMGCVAVAREIYDTIISSSGPGIEFFHGYTCSGHPLAAAAGLAALDV
                     YADEKLFDRASLLSSAFEEAVHSLCDARHVIDIRNLGLVAGIELDPRPEQPGARAMET
                     FHQCFDQGLLIRVTGDTIALSPPLILEQSHIDEMVGRLRDVLSTIA"
BASE COUNT          913 a         1163 c         1243 g          753 t
ORIGIN      
        1 cgaacacaag gacgacgaca acgccctgaa cgacgatcag atcgcgctgg gtgatcgcct
       61 ggaaaacgag gcgtcccaga cccggaagtg tgaatacatt ttcgatgatg atcgcgcctg
      121 caagcagaaa gggaatttga aggcccagca ctgaaaggac cgggatcagg gcattgcgaa
      181 gcgcatgccg gcggagcgcc tcgcctcggc tgaggccttt ggcgcgcgcc gagcgcacat
      241 agtcctcgtg catggtttca acgagcgccg atcgcaggac ccgcgtaagg atcgccgctt
      301 gtggcgtcgc gagtgcaatc gcgggcaaca ggagcgctcg aagtgccggc cagaaccccg
      361 catcccatcc gtcgaaccct cccgctggaa gccacctgag acggatcgag acaagcagta
      421 cgagaagcat cgcgagccag aaattcggaa gagcgattcc ggcctgcgca acgcccatga
      481 ttgccgcacc cgcagcgctc cgccgctttg ctgccgcaag aatcccaaaa gggaaggcaa
      541 tgagaaggga caggacggtc gcgagaagtg cgagtggcag ggaaacggtg attgcatcgg
      601 cgatcagtcg gccgacatca acccggtagg tgtaactcgt cccgaagtgc ccagtaagaa
      661 ggcccaagac ccactggagg tatcgctgaa atgcgggcgc atcgagtccc atttcacgat
      721 gcaacgcacc aattgcatct gggctggcat tgaggcccat catgtagcgc gccggatcgc
      781 cgggcattat ctgaagaatt acaaagatga tcgcggttgc cgcaaccatg gtcgcagcaa
      841 aggaggccag tcggcgtagc gcaccgcgaa gaccaagctt tgcaaccatc cagccaagcg
      901 ctgcgaaaaa gctcatcaaa atcatcgcaa cgagaatact gtgcccagcc ttggggccgc
      961 tggacgccac cgaggaagcc ccggcgcgcc cgataacagt cactcccgac atgactgttc
     1021 cagcgatagg tgaattcgcc caaagtccct cgatgccggc acgccgtatg ttgatccgcg
     1081 gctgctgaaa aaggaacaca ttgaccgcgt cacgcgcaag ctggatctgc aactgctgga
     1141 gaattgcctt ccgttgctga gcgtccatcg tcgcgtcgag cttcgcgagg agcgcgttgt
     1201 acgtggggct gtgatagccg aagtaatagt cgggacggcc ataaatgccg taatccattg
     1261 gttcgacatg atcgacgatg gtgagcgcga agtcgtgtcg tccgaagact tggtcgagcc
     1321 actgcgacca ctccatattt tcaatgcgca ctcggacgcc gacggcggcg agctgcgccg
     1381 cgatcatttc gccgctgcgc cgtgcgtaag ggcggggcgg aagtctcagg acgagatcga
     1441 ggccatttgg ataacccgcc ttagcaagaa gcgcgcgcgc cagcgcagga tcatgtgggt
     1501 agaagcccgt gagatcgata taggctgggt caccaggcga gaaatgactg ccgatcggcg
     1561 ttgcaagacc aaacatcgct ccttggatga tcgccttgcg atcgatcgca taggagagcg
     1621 ctcgtcggac gaggatattg ttgagcggcg gcacggcatt gttgatcgcg aggatagtct
     1681 tgctttcggt cgaaccgatt gtgactacga aattccgatc ggccctgaac tcgccgacat
     1741 tttcgggcgc tggatagttg gtgaaggcat caacgtcgcc cgaacgaagt gccgtatagg
     1801 ccgccgtggg atcgctgaag aacttgaacg taacctgggt aagtgccggc tcctttcccc
     1861 agtaagcggg atatcgtgat agctcgatgg ccgtcccgcg ttgccacctg tcgaatcgaa
     1921 acgggcctgt cccaatcggg tgcgttgcgt tgttcgcggc cgatcgtggg ctcacgatga
     1981 ccatgtcgcc ccatgcgagt acggagagga gttcggcgta aggtcgtgaa agccgtatcc
     2041 gaactgttga tcggtcgagc acgtcaacac cagcaagagg ctcaagaagc gctttttgcg
     2101 cgtttgcgga accaggcgca cgagcgcgat cgagcgaaaa tttaacgtcg gctgcggtca
     2161 ttgacgagcc atcgtgaaag tgcacgttcg tgcgaagctt gaagatgtac acgcgtaggt
     2221 tcggcgaaat ggtccagccg gaagccaggg ctggttcaat cgaaccggac tgcgtcatac
     2281 gcgtgagccc ctcgaaaatg ttctggtaaa cgacctcgtc gacggcagca gcagcgccgg
     2341 ccgtgggatc gaggttgggg ggctcgagtg gcatcccgac gacaattgtc gactgcgaag
     2401 cagcaaaagt cggttgcggg aaggcgagac aaagcagacc cagggcgccg accaagatcg
     2461 agtggataac cgtgagaagt gcaaggcgca tatcgcctcg tccggtcagg cgatggtgga
     2521 aagaacgtcg cgtaagcggc ccaccatttc gtcgatgtgc gactgctcaa ggatgagcgg
     2581 cggcgagagg gcaatcgtgt cgccagtcac gcggatgaga agcccctggt cgaaacactg
     2641 gtgaaatgtt tccattgcac gagcaccggg ctgttccggc cgagggtcaa gttcaatgcc
     2701 ggcgacgagc ccaagattgc ggatatctat gacatgccgt gcgtcgcaca gcgaatggac
     2761 agcctcttcg aatgcgctgc tgagcaacga cgctcggtca aacagcttct cgtcggcata
     2821 gacatcgagc gctgcaaggc ctgctgcggc ggcaagagga tgacccgaac aagtatagcc
     2881 gtgaaagaat tcgattcccg gacccgagct tgagatgatc gtgtcgtaaa tctctcgggc
     2941 gaccgccaca catcccatcg gtacggcccc gttcgtgagt cctttcgcgc aggtcattag
     3001 atcgggaatg acgttgaaaa aatgcgcggc cgtcggcgct ccgaggcgtc caaagcccgt
     3061 gatcacctcg tcgaagatca gcaagatgtc atgtttagcc gtgatcgctt gaagtctctc
     3121 aagatatcct gcgggcggaa tgagaacgcc agccgagccg gcaaccggct cgacgatcac
     3181 cgccgcaatt gtttgcgcgc cgtcttcgtc gatgatctct tcgagctgat cggcgagact
     3241 tgctcccgat gcaggcaggc cacgagtgaa cggttggtgg tctggaccga tagtgtcact
     3301 gagatgcctg acgcgcggga gcgtcggaaa acctcgacga ttgttctcga ttccgcccac
     3361 agaaatgccg ccaaatccga cgccatggta gccgcggcga cgtccgacca gcccggaccg
     3421 ctctggaaag cctcttgacc gctggtacgc gatcgcaatc ttgagtgcac tgtcgaccgc
     3481 ttctgaaccg gagttgacaa agaatagccg gtcgagtggc ggtggaaaga attgctcgag
     3541 gcgctcggcg agcttgaacg ctaaaggatg gccgatctgg aatgtcggtg aataatcaag
     3601 aatggctgct tctcggcgaa ttgcttccac gattggctca cgcccgtgcc cggcattcac
     3661 gcaccacagt cccgctgttc catcaagtat cgagcgattg gcaccgtcac gataatgcat
     3721 gccggacgcg gacaccaaca gcctcggaac cttcttgaat gcgcgattgt ccgtgaaggg
     3781 catccagaaa ttctcggtgt tcggcgccca atcgtttagc atcttccgac acactccgct
     3841 ttaccgcgcc agaagtgctg catgatgcgc aatacttgca acccactttc tcgtcccttc
     3901 ccttcggacc gggacgtacg ttggcgcctc gaagtcaaca tggtgtagag cccgagcatg
     3961 tggacgctcg ctaggacctt actttccgga ataccccatc gcatgagccg ccgttatcca
     4021 gagacggttc cgcgcgaccg acgcgtttgc cgctgacgat cccgtgctgg ac
//
LOCUS       DASRBJ010000322         5213 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_245410,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000322 DASRBJ010000000
VERSION     DASRBJ010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5213
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245410"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..245
                     /locus_tag="VE968_08915"
     CDS             <1..245
                     /locus_tag="VE968_08915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010233095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HZU51978.1"
                     /translation="DLIKRAMARMDDALAQAGLGAVKMLLQVHDELVFEVPEGLEHAA
                     SEVIRKVMADAALPALVLDVPLDVEVGWGPNWGEAH"
     gene            293..1798
                     /locus_tag="VE968_08920"
     CDS             293..1798
                     /locus_tag="VE968_08920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017184289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HZU51979.1"
                     /translation="MATLARGGRLNIFGFVLRLAASAPFLFIGGRIYGAAQLGRFAYA
                     VLTVEFAAQIAALGLRRGLAQLLANAKKPHSWVVADALLVAAVGSAVGMAILILFPRA
                     MYPTTQIHGLDRLLAVTVLAISWTDIALAALAYQHDVASTVRARSIVQPWTISIVAFL
                     WQYISLDDGLIVAYVCSMVAALIVALIPLVRCYGIPRGWKPDFATAWYNGYRALPVAA
                     ADAVEWASRHIDLAVLGALMPAAFVGIYYAAQQVATIPAKLKTSFEPVLGPAIARKIA
                     AGDRISVAKQVRQVTYWIIAAQLGIALALAIPGRAVMALVGSGFTGGTAMLAFLLAAE
                     VIAATAVVSEAALIYVARTKNMVISLIMLALEAGLAASLILVMRAQALPASFQATGPA
                     IGLCVALAFSSVTKSRLLRRELGAPVSGWRWDLIWSTIAGVIVGIGVRYFLTGFLQLI
                     IGVPLIMLAFGAVLWIKGFGPEDRELFKLRKSEVQDLRDAEAAAAGARDQL"
     gene            complement(1802..3421)
                     /locus_tag="VE968_08925"
     CDS             complement(1802..3421)
                     /locus_tag="VE968_08925"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HZU51980.1"
                     /translation="MNCDDFVRNRLPPAAQLPEFRFDLPELQYPGRLNAAVELLKGGD
                     SASVSVVTDHKSWSYRDLDDFSGRIGRLLIEQHGLMPGNRVLLRGPNTYTMLAAWLGV
                     LKAGGIVVATMPLLRPSEIETVLERARVSHAIVDSRHIGDFRLASAGSPWLNHLVEYD
                     GDLGRGELENRCALLDPIVAANTTADDPAIIAFTSGTTGVPKGCVHFHRDILAPCDTF
                     AKHLLCPQRGDIFMTSAPMAFTFGLGMGFLFPLRFGAAAATIEQASASTLVDAIVRHG
                     VTHLGTAPTAYKALLSEPRLDQALKTLRTCVSAGEHLPESTWRSWKSRTGMALIDGIG
                     STEMMHIFISARGEEIRPGSTGRPVPGYSATVLDEDGKPLKQGVGRLAVKGPTGCRYL
                     DDPRQADYVSNGWNVTGDTYRQDADGYFWYVARSDDMIVSSGYNIAAPEVENALLSHA
                     AVRECAVVGAPCTERGQKVKAFVVPAEGFVPDDALVAELQAHAKQKIAPYKYPREIEF
                     VGALPKTATGKLRRSALKTNTDDALSRGSQR"
     gene            complement(3418..3810)
                     /locus_tag="VE968_08930"
     CDS             complement(3418..3810)
                     /locus_tag="VE968_08930"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012429996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HZU51981.1"
                     /translation="MKILQPPNWPRPKGYSNGISARGRMIFTAGVVGWDEHETFLEHS
                     LHGQFARALMNVLEILAQDGAGPEHIVRMTCYVIDRSDYLRERDELGSAWRSIMGRNY
                     PVMALVEVKGLVESAAKIEIEATAVVPD"
     gene            complement(3807..4949)
                     /locus_tag="VE968_08935"
     CDS             complement(3807..4949)
                     /locus_tag="VE968_08935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HZU51982.1"
                     /translation="MASDEFLRWPFFDPTHRELSAALKDWCRSIPGETADLDTSCRAL
                     VESLGSAGFLKLCVADGDQRPDVRSLAIAREILAYHSALADFAFALQGLGSGAISLFG
                     TIEQKRQWLPKVARGEAIAAFAMTEPECGSDAANIQTSAMADGNDWVLLGEKTYISNG
                     GIADFYVTFARTGEGEGARGLSAFIIPAGLVEVTERIEMMAPHPVGRLKYENVRVPAG
                     AIIGEPGEGFRIAMETLNLFRVTVAAAALGFARRALDEALSFASRRRLGNSTLADNAV
                     TQAKLSDMLVAVDASALLVYRAAWQQDQGGMDNRQSAAAAKLYATEAAQDVIDAAVQM
                     HGGAGVTRGSKVEELYRDIRALRIYEGASEVQRQIIARGLLKRSGA"
BASE COUNT          976 a         1572 c         1572 g         1093 t
ORIGIN      
        1 ctgaccttat caagcgggcg atggcgcgca tggacgacgc gctcgcgcaa gcaggacttg
       61 gcgcggtgaa gatgctcttg caggtgcacg acgagttggt gttcgaagta cccgaggggc
      121 ttgagcatgc cgccagcgag gtaatcagga aggtcatggc tgatgccgcc ctgccggcgc
      181 tcgttctcga cgtgccgctc gatgtggaag tcggctgggg tcccaactgg ggcgaagcac
      241 attgacagac atgcacgcgg gaaatgtcgc gggccaggca catgacgcgg acatggctac
      301 gctggcacgc ggcgggcgac ttaatatctt cggcttcgtg ctccgcctcg cagcaagtgc
      361 gccattcttg ttcattggtg gccgcatcta cggagctgcg cagctcgggc ggttcgctta
      421 cgcagtcctg acagttgagt tcgccgccca gattgcagct cttgggctgc gacgcgggct
      481 tgcgcagctt ctcgcgaatg caaagaagcc gcactcgtgg gtggtagccg atgcgctgct
      541 cgtggcagcc gttggttctg cggttggcat ggcgatcctc atcctgttcc cgcgtgcgat
      601 gtacccgacg acgcagattc acggtctcga ccgactactc gccgtgacgg ttcttgcgat
      661 cagctggacc gacatcgcgc ttgcggcgct tgcctaccag catgatgtcg cctcgacggt
      721 gcgcgcccgc tcgatcgtcc agccttggac gatcagcatt gtcgcgttcc tctggcagta
      781 tatctcgctc gatgacgggc tcatcgtcgc ttatgtctgt tcgatggttg cggcgctgat
      841 tgtcgccttg attccgctgg tccgctgtta tggaataccg cgtggctgga aaccggactt
      901 cgcgactgcc tggtacaacg gataccgagc gctcccggtt gccgccgcgg atgcggtcga
      961 gtgggcgtca cggcacatcg accttgctgt gcttggcgcg ctcatgccgg cagcgtttgt
     1021 tggaatttac tatgcagcgc agcaggtcgc cacgatcccg gccaagctca agacgagctt
     1081 cgagccggtc ctcggaccgg ccatcgcccg caagattgct gccggtgaca ggatctccgt
     1141 cgccaagcag gtgcgccagg tcacctattg gatcattgct gcgcagttag gaatcgcgct
     1201 cgcgctcgcg atacccggca gagccgtgat ggcgctcgtg ggctccggat ttaccggcgg
     1261 cacggcaatg cttgcattcc tccttgcggc cgaggttatc gccgcaactg ccgtcgttag
     1321 cgaagcggca ctcatctacg tcgcaagaac caagaacatg gtcatcagtc tcatcatgct
     1381 tgcactcgag gctgggcttg cagcctccct gatccttgtc atgagggcgc aagcgttgcc
     1441 ggcgagcttc caggcgactg ggccagcaat cggcttgtgc gtggccctcg ctttttcctc
     1501 ggtcacgaaa tctcggctat tgcggaggga gcttggtgct cccgtctcgg gatggcgctg
     1561 ggaccttatt tggtcgacca tcgctggagt gatcgtcggg atcggcgtgc gctatttctt
     1621 gaccggtttc ctgcagttga tcatcggagt tccgctcatc atgctcgcgt tcggcgcagt
     1681 gttgtggatc aagggtttcg gccccgagga ccgtgagctg ttcaaactgc gcaaaagcga
     1741 agtgcaggac cttcgtgatg ccgaagcagc agcagcgggt gcgcgcgacc agctctagca
     1801 atcatctttg cgagcctcga gaaagcgcat catcagtgtt cgttttcaac gcgctgcgcc
     1861 gaagcttgcc tgttgcggtc ttgggcaggg cgccgacgaa ctcgatttca cgcggatatt
     1921 tataaggcgc aatcttctgc tttgcgtgcg cttgcaattc agccacgagc gcgtcatccg
     1981 ggacgaagcc ttctgctgga acaacgaagg cttttacttt ctggccacgt tccgtgcagg
     2041 gagcgccaac tacggcgcat tcacggactg ccgcgtgtga aagcaacgca ttctcaactt
     2101 ccggagcagc aatattgtag cccgagctca cgatcatatc gtcgcttcgc gccacgtacc
     2161 aaaaatagcc gtccgcatct tgtcggtagg tgtcgccagt cacgttccag ccattgctga
     2221 cataatcggc ttgccggggg tcatcgagat accggcatcc tgtcgggcct ttgaccgcga
     2281 ggcgaccaac gccttgcttg agcggctttc cgtcttcgtc gagcactgtt gcgctatatc
     2341 ccggcacggg cctaccggtc gaaccgggtc gaatctcttc ccctcgcgcc gagatgaata
     2401 tgtgcatcat ttcggtcgag ccaatgccgt cgatgagcgc catgcccgtt ctgcttttcc
     2461 acgaccgcca tgtgctttcc ggcaggtgct cgcctgccga cacgcacgtg cgcagcgttt
     2521 tgagagcctg gtcgagccgc ggctcggaga gaagtgcctt gtatgccgtt ggtgcagtgc
     2581 caaggtgagt gacgccgtgg cgaacgatcg cgtcgacgag cgttgaggca ctggcctgtt
     2641 cgatcgtggc cgcggcggcg ccaaagcgaa gcgggaacag gaagcccatt ccgagaccga
     2701 acgtgaatgc catcggtgcg cttgtcatga agatgtcgcc ccgttgcggg caaaggagat
     2761 gctttgcgaa agtgtcgcac ggcgcgagga tgtcgcggtg aaaatggacg catcctttgg
     2821 gaacgccggt ggtgccgctc gtaaaggcaa taatcgcagg atcatccgcc gtcgtattcg
     2881 cggcaacgat cggatccagc agcgcgcatc ggttctcgag ttcaccacgg cccaaatcac
     2941 cgtcatattc aacgaggtga ttgagccatg ggcttcctgc cgaggccaag cggaaatcgc
     3001 cgatatgacg actgtcgacg attgcatggc tcactcgagc gcgctcgagt acggtttcga
     3061 tttctgaggg gcggagtagg ggcatggttg caacgacgat gccgccagct ttcagtacac
     3121 caagccatgc agcgagcatc gtgtacgtgt ttggcccacg aagcagcacg cgattgccgg
     3181 gcattagccc atgctgctcg atgagaaggc gcccaattcg gccgctgaaa tcgtcaagat
     3241 cgcgataact ccagctcttg tggtcagtga ccactgagac gctcgcgctg tcgccgccct
     3301 tcagcagctc gacagcggca ttgagccggc cggggtattg cagttcgggc agatcaaagc
     3361 ggaactccgg aagttgcgcc gccggcggaa gacgattgcg aacgaaatcg tcgcagttca
     3421 atcgggcacc accgcggtgg cctcgatctc gatcttggcg gcactttcca caagaccttt
     3481 gacttcgaca agggccatga ctggatagtt gcgccccatg atcgagcgcc aagccgagcc
     3541 tagctcgtca cgctcgcgga ggtaatcact gcgatcgatg acgtagcaag tcatgcgaac
     3601 gatgtgctcc ggacctgcgc cgtcctgggc gaggatctcg agcacgttca taagtgcccg
     3661 tgcaaactgg ccgtggaggc tatgctccag gaacgtctca tgctcatccc aaccgacgac
     3721 gcctgccgtg aaaatcattc gtccgcgagc actgatgcca ttggaatagc ctttcggccg
     3781 cggccaattg ggcggttgga ggattttcat gcgcctgacc ttttcagcaa gccacgcgca
     3841 atgatctggc gctgcacttc actcgcgccc tcgtaaatgc gcagcgctcg aatatcgcga
     3901 tacagttcct ctaccttcga ccccctcgtg acgcccgcgc cgccatgcat ctgaaccgcg
     3961 gcgtcgatca cgtcttgcgc cgcctccgtt gcgtagagct tggccgcggc ggcggattgg
     4021 cgattgtcca ttccaccttg gtcctgctgc caggcagcgc ggtagacgag cagcgccgac
     4081 gcatcgacgg caacgagcat gtcggaaagc tttgcctgag tgacagcatt atcggcgagc
     4141 gtgctgttgc caagacggcg cctgctggcg aacgatagcg cttcgtcgag tgcccgccgt
     4201 gcaaacccca gagccgctgc ggcaacggtt acgcggaaaa gattgagcgt ctccattgcg
     4261 atccggaagc cctcacctgg ctcaccgata attgctccag ccggtacgcg gacattctca
     4321 tatttgagac gtccaacggg atggggcgcc atcatttcaa tccgctcggt aacctcgacc
     4381 agaccagctg gtatgatgaa cgcagacaag ccgcgtgcgc cctctccttc gccggttcgg
     4441 gcgaaggtca cgtaaaagtc ggcgatcccg ccatttgaga tgtatgtctt ctcgccaagg
     4501 agaacccagt cgtttccgtc tgccatcgcc gaagtctgga tattcgcggc atcggatccg
     4561 cattccggct cggtcattgc aaatgcggca atggcctcgc cccttgcgac ctttggcaac
     4621 cattgacgct tctgttcaat cgtgccgaac agtgaaattg cgcccgaacc gagcccttgc
     4681 agcgcaaagg cgaagtcggc gagagcgctg tgataagcaa gtatttcgcg cgcaatggcg
     4741 aggctccgta cgtcggggcg ctgatcgcca tcggctacgc aaagcttgag aaatccggcg
     4801 cttccgaggc tctccacgag agcgcgacag cttgtgtcga gatccgcggt ctcccccggg
     4861 atcgagcggc accaatcctt aagcgcggca gagagttcgc gatgggtcgg atcaaaaaaa
     4921 ggccagcgga ggaattcgtc gctagccatg atgaaacccg acgggagccg tcccacctac
     4981 ctcattgccg atcatgatga gactcaccat ccgaatggcc caacaactat tggtcatcgg
     5041 ttgcagcaat agcgcaaaca agcatcttcc ggacagtccc agtcgcgcgt tcagtcgccc
     5101 tggaactcgg gtttgcgctt gttcgcaaat gcgtcgtagg cgcgcttgaa atcattggtg
     5161 cccatgcaat gcgcttggac ccgcgcttcc atttccaacg cttcatcgag cga
//
LOCUS       DASRBJ010000323         3054 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_292985,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000323 DASRBJ010000000
VERSION     DASRBJ010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3054
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292985"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..577)
                     /locus_tag="VE968_08940"
     CDS             complement(<1..577)
                     /locus_tag="VE968_08940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_function: GO:0009678 - diphosphate hydrolysis-driven
                     proton transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proton-translocating pyrophosphatase"
                     /protein_id="HZU51983.1"
                     /translation="MNLLYIAIICGLIAVVYGIITSRQVLAASAGNQRMIEVSGAIQE
                     GAAAYLRRQYTTIAIVGVVVAIIVFFFLGGLSAAGFVLGAVLSGAAGFIGMNISVRAN
                     VRTAEAARRSLQSGLTTAFRAGAVTGLLVAGLALLAISGLFWYLTGPAGYAPNDRPVV
                     TALTALALGASLVSIFARLGGGIFTKAADVGA"
     gene            complement(740..1717)
                     /gene="thiL"
                     /locus_tag="VE968_08945"
     CDS             complement(740..1717)
                     /gene="thiL"
                     /locus_tag="VE968_08945"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003039520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HZU51984.1"
                     /translation="MRELEVIERLRRIAKAPEARGLLDDVATLDTLVLTHDTIAEDVH
                     FLSHDPPASVGWKLVAVNLSDIASKGASPLGALLSLTITGPGDWELDFLDGVEAACES
                     YGLSLIGGDTIGLPVGAPRVLGLTAIGRSGEHVPHRSGALLGDELWLVGTVGDAAAGL
                     ALLEENQNADGPLVDIYRRPVPQLEAGRILAPHAHAMMDVSDGLLLDARRMADASRCA
                     IRIELDRLPLSSAFVAERGQSLDSRLFAATGGDDYALLGVFPAKFNPATLSLPSGTRI
                     NRIGSIVGAGPRLVLTFGGESIELPEKLGFEHESFDTRRLSSSKLGHRP"
     gene            complement(1721..2179)
                     /gene="nusB"
                     /locus_tag="VE968_08950"
     CDS             complement(1721..2179)
                     /gene="nusB"
                     /locus_tag="VE968_08950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HZU51985.1"
                     /translation="MTQARSRSRSAARLAAVQALYQQEMEGTPLPRLLSEFHDHRLGA
                     TIEDATYHKAEQDFFDDIVTGADARRAEIDGLITDRLAEGWSLDRLDRPMRAILRAGA
                     YELIARRDVPVGSVISEYVDVAHAFYDKRESGFVNGLLDAIAKEARAAQA"
     gene            complement(2176..>3054)
                     /locus_tag="VE968_08955"
     CDS             complement(2176..>3054)
                     /locus_tag="VE968_08955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HZU51986.1"
                     /translation="VTLNVALAGDRAKPAVILLHGFPESHRTWRDVAPMLARGFFVIM
                     PDQRGFAGSDLPQDVSAYKTDCLIDDLFALAGALDLAQFSLVGHDWGGAIAWGAALRA
                     DPRLDRLAIVNAPHPVIFQKSLIEDEEQRSASQYINAFRTPGFEQYVEAKGFEWFFNA
                     TFARHTDVRKIPEAERRQYIADWSQPGAFNAMLNWYRAANVIVPPPGIAAPVPEFLLR
                     LFPTVDIPTLVIWAMNDAALLPVQLEGLDRLVRDLSIIRLADVGHFAPWESPGRIVAA
                     LMPFLERQPAARASAQ"
BASE COUNT          648 a          918 c          930 g          558 t
ORIGIN      
        1 cggcgccgac gtctgcggcc ttggtgaata ttccgccgcc gagcctcgca aagatggaga
       61 ccaggcttgc gccgagggct agtgctgtaa gcgcggtcac gactggccgg tcgtttggag
      121 cgtagccggc ggggcccgtc aagtaccaga atagtcctga aatcgcgaga agtgcgaggc
      181 cggcaaccag cagaccagta acggcccccg cgcggaatgc ggtcgtgagc ccgctttgca
      241 agcttcgccg cgccgcttct gcggtacgca cgtttgcgcg caccgagatg ttcattccga
      301 tgaacccagc agctcccgac agaacggctc caaggacgaa accggcggcg ctaagtccgc
      361 caaggaagaa gaatacaatg attgcaacaa cgacgccgac gattgcgatc gttgtgtatt
      421 ggcgtcgaag gtaggcggct gcgccttcct ggattgcgcc cgaaacttcg atcatgcgct
      481 ggtttccggc ggatgcggcg agcacctgac ggcttgtgat gatgccgtaa acgacggcaa
      541 tcagtccgca aatgatagcg atgtaaagca ggttcatgga cttgcgcttc cctcccattg
      601 ggcagctcgc ggccgacatt gacccgcggc cgcccgaaga cggagcgaac gtttagggag
      661 cgttttcgcg gcttgcaacc gcttgggatt aaacgatcag tgcaacagga atgcgaatgc
      721 cattccagac agcagcccgc taaggccgat gacccagttt cgaagaggaa agcctccgag
      781 tatcaaaact ttcgtgctca aagccaagct tctccggcag ctcgattgat tctccgccaa
      841 aagtgaggac cagccttggc cctgcgccga caatcgagcc gatccgattg attctcgtcc
      901 cggaaggtaa agaaagggtt gccggattga actttgctgg aaagactccg agcagggcgt
      961 aatcgtcgcc gcccgtcgcc gcgaacagcc ggctgtccag cgactgccct cgctcggcaa
     1021 cgaacgcgct cgacagtggc agccggtcaa gctcgatgcg gatagcgcag cggctagcgt
     1081 ccgccatccg tcgagcatcg agcagcagtc cgtcggagac gtccatcata gcatgcgcat
     1141 gtggcgcaag tatgcgtccc gcctcgagct gcggtactgg tcggcggtaa atgtcgacga
     1201 gtggcccatc cgcattctga ttttcttcaa gaagtgcgag gcccgccgcg gcatcgccga
     1261 cggttccaac gagccagagt tcgtcaccca aaagtgcgcc ggagcgatgt ggcacgtgct
     1321 cgccggatcg gccgattgcc gttagaccaa gaacgcgagg cgccccgacg ggcaagccaa
     1381 tggtatcgcc cccgatcagt gagaggccat agctctcgca cgctgcctcg actccatcga
     1441 ggaagtccag ttcccaatct cccggtcccg ttatcgtaag cgagagcagt gcgccgaggg
     1501 gcgatgctcc cttcgaagca atatcggata gatttaccgc gaccagcttc catccaacac
     1561 tcgctggcgg gtcatgggac aggaagtgaa cgtcctcggc gatcgtatca tgcgtcaata
     1621 cgagagtgtc gagagtcgca acgtcgtcga gcagcccgcg cgcttcgggt gctttggcga
     1681 tgcgcctcaa tcgttcgatg acctcgagct cgcgcattgg ctaagcctgc gccgcccgcg
     1741 cctccttcgc aatggcatca agcagtccat tcacgaagcc gctctcccgc ttatcgtaga
     1801 aagcgtgcgc tacgtcgaca tattccgaga ttaccgaccc cactggcaca tcgcgccgcg
     1861 cgatcaattc atacgcaccg gcacgaagga ttgcgcgcat tggcctgtcg agacgatcga
     1921 gactccatcc ttccgccagt cgatcggtga tcaagccgtc gatttcggct cggcgggcat
     1981 ccgcgcccgt aacgatatcg tcaaagaaat cctgctcagc cttgtgatag gtggcatctt
     2041 cgatcgtggc tccgagacgg tggtcgtgga attcgcttaa gagccggggc aggggagtac
     2101 cctccatttc ctgctggtaa agcgcctgaa cggcggcgag ccgcgcagca gaacgcgagc
     2161 gtgaacgagc ctgggtcatt gggctgaagc cctagccgcc ggttgtcgct cgagaaaggg
     2221 catgagtgct gcaacgatgc gtccgggcga ttcccacggt gcgaaatgac ccacatccgc
     2281 gagacggatg atcgaaagat ctcggacgag ccgatcgagc ccctcgagct gtaccgggag
     2341 gagcgcggca tcattcattg cccagatgac tagggtcggg atgtccacgg ttggaaaaag
     2401 gcgaagaagg aattcgggaa ccggcgccgc aatgcccggt ggggggacga tcacattggc
     2461 cgcgcgatac cagttaagca tggcgttgaa ggcacccggc tgcgaccagt cggctatgta
     2521 ctgccgcctt tccgcttcag gaatcttcct gacgtccgta tgccgcgcaa aagttgcatt
     2581 gaaaaaccac tcaaacccct tcgcttcgac atattgctcg aagccgggtg tccggaacgc
     2641 attgatatat tgcgatgctg accgctgctc ctcgtcctcg atgaggctct tctggaaaat
     2701 gaccggatgc ggcgcgttga ctatggcaag tcggtcgagg cgcgggtcag cgcgcagtgc
     2761 ggcgccccac gcaatagctc ctccccagtc gtggccaaca agagagaact gcgcgaggtc
     2821 tagcgcaccg gcaagtgcga ataggtcatc gatgagacag tcggtcttat atgcgctgac
     2881 gtcctgcgga agatcggagc ctgcaaatcc gcgctgatcc ggcatgatca caaaaaaccc
     2941 acgggcgagc atcggtgcga catcgcgcca cgtgcggtgg gactccggga aaccgtggag
     3001 caggatcacg gccggttttg cgcgatcacc ggcaagcgca acgttcaatg tgac
//
LOCUS       DASRBJ010000324         6306 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_191684,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000324 DASRBJ010000000
VERSION     DASRBJ010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6306
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191684"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..303
                     /locus_tag="VE968_08960"
     CDS             <1..303
                     /locus_tag="VE968_08960"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007014883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I"
                     /protein_id="HZU51987.1"
                     /translation="KAAIAYLPDNKVVGISKLARVLHGFARRLQVQERLTAQVADAIW
                     EHLQPKGVAVVIEASHACMTARGVSTPGVMMTTSRMMGTFREDERSRREVLALMGY"
     gene            complement(378..842)
                     /locus_tag="VE968_08965"
     CDS             complement(378..842)
                     /locus_tag="VE968_08965"
                     /inference="COORDINATES: protein motif:HMM:TIGR02284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PA2169 family four-helix-bundle protein"
                     /protein_id="HZU51988.1"
                     /translation="MAEHSSAISTLNTLIATTIDSITGYEDSAENIDNERFREIFRAR
                     ANERQQIVEQLRSEVRRLDGDPEDGGSFLGKAHQRFEDLKAAITGRDEKSIINEVERG
                     EDYLKEKWQAALQSGDLDGETHDLVERLYQQVKSGHDQMSQLKHGLETPSHA"
     gene            992..2587
                     /locus_tag="VE968_08970"
     CDS             992..2587
                     /locus_tag="VE968_08970"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HZU51989.1"
                     /translation="MAFTRRALLEQIGAAAGLGATYLAMETLGLAVPTPVGAENFALP
                     KGSGNDQTVVVLGAGIAGLVCAYELKQAGYRVCVLEARSRVGGRSWTIRGGDIVEQIG
                     RADQHAMFDRGLYFNAGPARIPSTHRLMMSYARRLGVDLETFVNVNRSAGWDFGGRVE
                     PERRMVEDMRGLVAELLAKAIDKRALDTLASPSDLDALRKFLPSYASLDQHGTYEPVG
                     WSGYSVKPGGYNQFPVPLPPLGLRELMPTSTNPQARGAFVLPYVFEHIANMQATMLQP
                     VGGMDRIAHALYEQVKGAVKLATPVSAIRRSGEGVRILHRGISRETSADYCICTLPLS
                     ILRRIPSDFSAAKKAALSAAPPYRDSVKVAFESPRFWESDDNIYGGLAWTDRPNENVI
                     YPSDGFNQSKGIIIPGYCVGWTRQDNPEAFVALSDEARFQQCYESIEAFHPGKSHLLK
                     KGVTVAWSLTRYSEGASAIWPGDAMNPPERGPLYEELLRPEGPIVFAGEHLSYQPAWQ
                     EGAASSAHEALKLVQSMVRAKSS"
     gene            2730..3500
                     /locus_tag="VE968_08975"
     CDS             2730..3500
                     /locus_tag="VE968_08975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HZU51990.1"
                     /translation="MRLTTAAALLLSLAAAPIAGRPAPAPSPSIATAVADTDHRSAAN
                     VQMDEGRKPAAVLEFLGLRRGMNVLDLFGANAYWAEISAPVVGQTGHVTVWMPTQFYS
                     EKGKQSFAAFMASHPNVSIVTSPFEAPDLPKNYADFVILNDNYHDSYWQNAKLNLPRM
                     EPAEFLKAVYASMRPGAVIGVIDHVANSNSDTRATVEKYHRIDPKVVKADFERAGFVF
                     VGSSDLLRNPADNHLTEVHDPSIKGHTDRFIFKFKKPR"
     gene            3497..4786
                     /locus_tag="VE968_08980"
     CDS             3497..4786
                     /locus_tag="VE968_08980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HZU51991.1"
                     /translation="MSERSRDEAARAPRRSFTAYYALAALLVGIIAGMAANGLAEPAR
                     SDLLGIASFIGTLWLNALKMTVIPLVVALLVVGIAKSAEAAQAGTIAGRSVLWIVIVC
                     TGSAIFGAVAVVALTHAFPLPRATAALLRTALGSVEQKTATPLPGAAEFFKGIVPPNV
                     VAAAANGDVLPLTVFAVLFALALTRIASSGRQLVVNVFDALGESLLVIIGWVLFVAPL
                     GVLALAFTVGSTAGGAAFAGLGHYVVVISLIGILVTLAAYPLALVAGGVGPGLLTRGL
                     IAPQAVAISTRSSLACLPAMLTSTREMGVRQEVGDVALPIAVALFRATGPAMNVAVAF
                     YVAHWLGLHPSLTQMIAATAVGAVMSYGAVSLPGEVSYISSIAPIALALGVPIAPLGL
                     LVAVEMIPDIFRTVGNVTHDVALATIVDKGSRRRLES"
     gene            4976..5323
                     /locus_tag="VE968_08985"
     CDS             4976..5323
                     /locus_tag="VE968_08985"
                     /inference="COORDINATES: protein motif:HMM:TIGR04433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UrcA family protein"
                     /protein_id="HZU51992.1"
                     /translation="MLKPLPAIAAITLAAALVIPTVTQAAEENSTRVSYADLNLATGI
                     GQTALQRRIAFAAEMVCGSADPRDLVYWQAVGNCRTDTIADAQPAYEAAVAQALHPSV
                     TVLEATALVVTAH"
     gene            complement(5384..6130)
                     /locus_tag="VE968_08990"
     CDS             complement(5384..6130)
                     /locus_tag="VE968_08990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HZU51993.1"
                     /translation="MPETSALRVLIADDEPLAAERLQLLLARADGAQLVGTASDGDSA
                     INLTSALHPDVLLLDIAMPGLDGIGVARALAAQTPSPAVVFVTAFDQFAVAAFEVEAV
                     DYLMKPVEPNRLQRALDRARAYLHQRSSEPGHQAASQWLEEFWASDLSGLVRIAARDV
                     DRVSAERDYMRLHVGRRSWLIHHSMAALEEGLNPELFVRLHRSAIVRKDFIAGFTRNP
                     SGRWIARLADGTEQPVGRLYSDRVRAIAGR"
     gene            complement(6123..>6306)
                     /locus_tag="VE968_08995"
     CDS             complement(6123..>6306)
                     /locus_tag="VE968_08995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU51994.1"
                     /translation="PKHGGKEDLPAPTHEGTGLGLANVCQRLEARWGSHASCRYGPMS
                     GGGFKVSLTMPVDTNA"
BASE COUNT         1180 a         1899 c         1931 g         1296 t
ORIGIN      
        1 aaggcggcaa ttgcttatct gcctgacaac aaggttgtcg gaatcagcaa acttgcgcgt
       61 gtcctccacg gctttgcgcg ccgtctccag gtccaggagc gtctcactgc gcaagtcgcg
      121 gacgcgattt gggaacatct ccagcccaag ggcgtggcgg tagtaatcga ggcgagccac
      181 gcgtgcatga cggcgcgagg ggtctcaacg cccggcgtga tgatgaccac cagccggatg
      241 atgggaacgt tccgggagga cgagcgcagc cgccgcgaag tcctcgcact catgggctat
      301 tgacgctgac cccgcgaaaa acggggcgac cctcgctcat cgcgaggatc gcccgcttag
      361 ctgcgcacgc ctacgcgtca agcgtgcgag ggtgtctcga gtccgtgctt cagctggctc
      421 atttggtcgt ggcctgattt gacctgctga tagagcctct cgacgaggtc gtgcgtttcg
      481 ccatcaaggt cgccgctctg aagagctgcc tgccacttct ccttgagata atcttcgccg
      541 cgctccacct cgttgatgat cgacttttcg tctcggcccg tgattgcagc cttgagatcc
      601 tcgaagcgct ggtgcgcctt gccgaggaag gaaccgccgt cttctggatc gccgtctaga
      661 cgccggacct ccgagcgaag ctgttcgacg atttgctggc gctcgttcgc acgcgcgcgg
      721 aagatctcgc ggaagcgttc gttgtcgata ttctctgcgc tatcttcata gcccgtaata
      781 ctgtcgatcg tcgttgcgat cagagtgttc aaggtactga ttgcgctcga atgttccgcc
      841 atgctttttc tccacttagt tgcattcagg attgttcgcg caatgaacgc ttgacggttc
      901 ctggcgatgc cttcggcaag cgaaaaattt atcgcgggcg gtcctgaatt gctgtcaatc
      961 tgtcgtcgcc atggcggata atgatgattc gatggcattt acgcgacgag cgttgctcga
     1021 gcagattggc gcggccgcgg gtctcggcgc cacctatctg gcgatggaga ctctggggct
     1081 tgccgttccg acgcccgtcg gcgccgagaa tttcgctttg cccaagggta gcgggaacga
     1141 tcagaccgtc gtcgtcctcg gcgccggaat cgccggtctc gtctgcgcct acgagttgaa
     1201 gcaagccggc taccgagtct gcgtacttga agcgcgaagt cgtgtcggcg gccgctcatg
     1261 gacaattcgc ggtggtgaca tcgttgagca gatcggccgc gctgaccagc acgcgatgtt
     1321 cgaccgtggg ctgtacttca atgcaggtcc ggcgcgaatc cccagcactc atcggctgat
     1381 gatgagctac gcgcggcgac ttggcgttga cctcgagacg ttcgtcaacg tgaaccgcag
     1441 tgccggctgg gactttggtg ggcgtgtcga gcccgaacgg cgcatggtcg aggacatgcg
     1501 tggactggtt gcggagctcc tcgcgaaggc aattgacaag cgagcactcg atacgctcgc
     1561 ttcccccagc gacctcgatg ctctgcgcaa gttcctgcct tcgtacgctt cgcttgatca
     1621 gcatggcacc tatgagccag tgggctggtc aggctactca gttaagccgg gtggctataa
     1681 tcagttccca gtgccgctgc cgccgcttgg cctgcgcgag ctgatgccga ccagcacgaa
     1741 cccgcaggct cgtggagcgt tcgtgctgcc gtacgttttc gagcatatcg ccaacatgca
     1801 ggctacgatg ctccagccgg tcggcggcat ggatcgcatt gcgcacgcgc tttacgagca
     1861 ggtcaaaggc gctgtgaaac tcgcgacgcc tgtttccgca attagaagga gcggagaggg
     1921 ggttcggata ctgcatcggg gcataagccg cgagacgagc gcggactatt gcatatgcac
     1981 cttgccgctc agcatcctgc ggcggattcc gagcgatttt tcagcggcca agaaagccgc
     2041 tctctccgcg gcaccgccgt atcgggacag cgtgaaagtt gcgttcgaaa gcccgcgatt
     2101 ctgggaatcg gatgacaaca tctatggtgg ccttgcttgg accgaccggc ccaacgaaaa
     2161 tgtgatttac ccctcagacg gctttaatca gtccaagggc ataatcattc ccggctattg
     2221 tgtcggctgg acgaggcaag acaatccgga agcgttcgtg gcactttccg acgaagcgcg
     2281 gtttcaacaa tgttatgagt ccatcgaggc ctttcatcca ggaaagtcac acttgctgaa
     2341 aaaaggcgtg acggtagcct ggagccttac ccgctattcg gaaggagcaa gtgcaatctg
     2401 gccgggcgat gcgatgaacc ctcccgagcg tggacctttg tacgaggaac tgctgagacc
     2461 ggaggggccg atcgtcttcg ccggagaaca tcttagctac cagcctgcct ggcaggaggg
     2521 agctgcgagc tcggcacacg aggcgctaaa gctcgttcaa tccatggtgc gagcaaaaag
     2581 ttcgtaacaa aagggcgctt ggctcgcacg agaatgccgt tccccgcgag actgcgtatg
     2641 gttcgatcag cggcacattc aagggatgaa cgaggctggc gtcgcgaagc gtacggcaat
     2701 atggaaaagc acgagaaggg ggaactagaa tgcgcttgac cacagccgcc gcacttttgc
     2761 tgagccttgc ggccgcccca attgccggca gaccagcgcc cgctccttcg ccgagcatag
     2821 caacggcggt tgccgatacc gaccaccgga gcgcggcgaa cgtgcaaatg gacgaaggga
     2881 gaaagcctgc tgcggtcctt gaattcttgg ggctccgccg cgggatgaac gtgctcgacc
     2941 tctttggcgc caatgcctac tgggcagaga taagcgcgcc ggtcgttgga caaacagggc
     3001 acgttacggt gtggatgccg actcaatttt atagcgaaaa aggcaagcag tcgttcgcgg
     3061 cgtttatggc gtcgcatcca aacgtttcga tcgtcacctc gccgttcgaa gcgcccgacc
     3121 ttccgaagaa ctatgccgac ttcgttatac tcaacgacaa ttaccacgac agctactggc
     3181 agaacgcgaa gctcaacctt ccgcgcatgg aaccggccga gttcctgaaa gctgtttacg
     3241 cgtcgatgag gcccggtgcg gtgatcggag tgatcgacca tgttgccaat agcaacagcg
     3301 acacccgcgc aacggtcgag aagtatcatc ggatcgatcc aaaggtcgtc aaggcggatt
     3361 tcgagcgggc cggattcgtt ttcgtcggaa gcagtgacct gttgcgcaac ccagcggaca
     3421 atcacctcac cgaagtgcat gatccgtcga tcaaggggca taccgaccgc ttcatcttca
     3481 agttcaagaa gccgcgttga gcgagcggtc ccgggacgaa gcggcgcgag cgccgcgccg
     3541 aagctttact gcctattacg cgcttgcggc gctcctcgtc ggcatcatcg ccggaatggc
     3601 agcaaacgga cttgccgagc ctgcgcgttc tgaccttctt gggattgcat ccttcatcgg
     3661 cacgctttgg ctgaacgcgc tcaagatgac ggtcattccg ctggtcgtgg cgttgctcgt
     3721 cgttggaata gcaaagagcg ccgaagcggc gcaggcgggg acgatcgcgg gtcgatccgt
     3781 cctctggatc gtcattgtct gcactggttc ggcaatcttc ggtgcggttg cggtggttgc
     3841 cctaacccac gctttcccgc tgccgagggc gactgccgcc ttgttgagga cagcccttgg
     3901 aagcgttgag caaaagaccg cgactccact ccccggagcc gcagagttct tcaagggcat
     3961 cgtgcctccg aacgtcgttg cagcagcagc gaacggtgac gtgcttccgc tgacggtctt
     4021 tgctgttctc ttcgcgctcg cgttgacgcg cattgcttct tccggccgtc agctcgtcgt
     4081 caatgttttc gacgcactgg gagagtcact actcgtcatt atcggctggg tcttgtttgt
     4141 cgctccgctc ggcgttctcg cactagcgtt cacggtaggc tcgaccgctg gcggtgcagc
     4201 gttcgcgggc cttggccatt atgtcgtcgt catttccctg atcggcatcc tcgttacgct
     4261 tgctgcctat cctcttgcgc tcgtcgccgg cggagtgggg cctgggttgt tgactcgggg
     4321 cctcattgct cctcaggccg tagcaatctc gacgcgctcg tcgttggcct gccttcccgc
     4381 aatgctcaca tcgacgcgcg aaatgggggt gagacaggag gtcggagacg tcgcgcttcc
     4441 cattgcagta gctctctttc gcgcgaccgg cccggcgatg aatgtcgccg tcgccttcta
     4501 cgttgcccac tggcttggtc tccatccaag tctcacgcag atgattgcgg cgacggccgt
     4561 cggcgcagtc atgagctacg gcgccgtcag tcttccgggt gaagtcagct atatcagttc
     4621 gatcgccccg atcgctctag cgcttggcgt accgattgct ccgctcgggc tgctcgttgc
     4681 cgtcgaaatg attccagata tctttcgaac cgtcggcaac gtgacccacg atgtggcgct
     4741 tgcaaccatt gtcgacaaag gatcgcgccg acggctggaa agctgaacgc cagctgacca
     4801 ccgttcgtcg attaggcagg ccacgaacgc ccttcgtcgg gtcgccgaca atgttcgtat
     4861 catcggtcga gtgggcagcg accgtgcctt agcaaaggtt catcagaccc tcagcggcgc
     4921 ggggtcttcc ctcttgaatt ccccagcggc cccgcgtcgc aaagggagat gaaaaatgtt
     4981 gaaacccctt ccggcaattg ccgctatcac gcttgctgcg gcactcgtga tcccgactgt
     5041 cacgcaggca gccgaagaga attcgactcg tgtttcctac gcggatctca atcttgcgac
     5101 gggaatcggt cagacggcgc tgcagcggcg tatcgccttc gcggccgaaa tggtgtgcgg
     5161 ttccgctgac ccccgagacc tcgtctactg gcaagccgtc ggcaactgcc gaaccgacac
     5221 catcgccgac gcccagccgg cctatgaggc ggcagtcgcg caagcgcttc atccaagcgt
     5281 gaccgtgctc gaagcgacgg cgctcgtcgt gaccgcgcat tgaggacatc cgtggctgcc
     5341 gcgcaaccgg cttctgccgg agcgcggcag ccctattttt ctgttaacgt ccggcgattg
     5401 cgcgaactcg gtccgagtag aggcggccga cgggctgctc ggttccatca gcaagacggg
     5461 caatccatcg gcctgaaggg ttgcgcgtaa agcccgcgat gaaatcctta cggacgattg
     5521 ccgaacgatg caggcgaacg aagagttcgg ggttcaagcc ctcttcgagt gccgccatcg
     5581 aatgatggat tagccagctt cgccgtccga cgtggagccg catatagtcg cgttcggccg
     5641 agacccgatc cacatcgcgc gcagcgatgc gcaccaggcc cgacaggtcg gacgcccaaa
     5701 actcttcgag ccattgagac gctgcctggt gtcctggctc ggaacttcgc tgatggaggt
     5761 aggcccttgc gcgatcaagt gccctttgta atcggttggg ctcaaccggc ttcatcagat
     5821 agtcgaccgc ctcgacctcg aacgcggcaa cggcaaactg gtcgaacgcg gtgacgaata
     5881 cgaccgccgg agagggggtt tgggcggcaa gcgcgcgagc cacaccgatt ccgtcaagac
     5941 ccggcatcgc gatgtcgaga agcagcacgt ccgggtggag agcgctggta aggttgatcg
     6001 cgctgtcacc gtcgcttgcc gttcccacga gctgagcgcc gtcggcgcgg gcgagcagca
     6061 gttgcaggcg ctcggccgca agcggttcgt catcggcaat gaggacgcgc aacgcactgg
     6121 tctcaggcat tggtgtctac cggcatagtc aatgagacct tgaacccgcc gccgctcatc
     6181 ggtccatagc ggcagcttgc gtgcgagccc caccgtgcct cgagccgttg gcatacattg
     6241 gcaaggccaa gtccggtccc ttcgtgcgtg ggagcgggaa gatcctcctt gccaccgtgc
     6301 ttgggg
//
LOCUS       DASRBJ010000325         2958 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_345913,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000325 DASRBJ010000000
VERSION     DASRBJ010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2958
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345913"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..437
                     /locus_tag="VE968_09000"
     CDS             <1..437
                     /locus_tag="VE968_09000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51995.1"
                     /translation="RRQAKEGREPGEVGKVAIGCAMMSAGNLLFTILSAATPPHKLFW
                     GWGYAYFLIVSTSYLFTMPVLLALVSRATPRRLVGTMMGFAYAGLFIANVGGGWLGRF
                     YEVLGPTGFWALQAAIAAIGCAGALLLRKRVGKLLGPGLDAS"
     gene            592..1236
                     /locus_tag="VE968_09005"
     CDS             592..1236
                     /locus_tag="VE968_09005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HZU51996.1"
                     /translation="MAIVVRTLSEQVFDIVREQIVSGQIASDLPIRQDALAAELGVSK
                     IPLREALARLEQEGLLTSQANRGYFVRPMSLHEADEIFALRRAIEPEAAALAAGAANK
                     DERKQVREAFERLDKAINERLNEVALRNREFHTALVRPAARPLTMQLIERLALMAERY
                     VIAHLEPAGRDARAHREHRGLLRAWLAGDQESVKERLSAHIQGTLDDLKQQLSD"
     gene            complement(1225..>2958)
                     /locus_tag="VE968_09010"
     CDS             complement(1225..>2958)
                     /locus_tag="VE968_09010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-L-arabinofuranosidase domain-containing
                     protein"
                     /protein_id="HZU51997.1"
                     /translation="YGGINEAFAELYAKTRDERWLRLANRFYDRKVLDPLAAGADDLA
                     DIHSNTQIPKIIGLARIHELADAPDKARTARFFWSRVVRHHSFAIGGNGDREYFFDPD
                     SISKHITEQTCEHCATYNMLKLTQHLFAWAPDGALMDFYERAHLNHVMAAHHPVTGSF
                     TYMTPLMSGAPREWSNPKKDPFWCCVGSGMESHSKHGVAIFSEGGGSLLVNLFIPAKA
                     EWEKRGAVIDLNTRYPMDGEVRLALTKLRRPGRFLVALRIPQWAADKASIDINGKKVP
                     FNVERGYALIDRFWKAGDVIQLNLPLELRIEPTPDNDRIVAILRGPLVLAGDLGPSSA
                     PWEHNDPALVGNDILGAFVAEQAQQASYRTRGIVHPADLRFVPFFNQYDRRSAIYFTR
                     FTPTEWEKQQSAFASEKARQRELEARSVDSVHLGENQSEHDHQLRSNISYPVSYRWRK
                     GRDARSGGFFEFSLKTRPGPLVLEATYWGDERPRDFDIFVDDVKLATQHLGKVRPGEF
                     FDVDYQVPRPLTDEKSSIMVRFVPHDGNTAGPVFGVRLLTTSAATTGWSRRTVGPERS
                     YAAETPKSSIR"
BASE COUNT          597 a          836 c          902 g          623 t
ORIGIN      
        1 ggcggcggca ggccaaggag ggccgagagc cgggcgaagt cggaaaggtc gcaataggct
       61 gtgcaatgat gagcgccggc aacctgctct tcacgatatt gtcggccgct acgccgccgc
      121 acaagttgtt ctggggctgg ggttacgctt acttcctcat cgtttcgaca tcctatctgt
      181 ttaccatgcc tgtcctactg gcattggtgt cgcgcgctac tccgcgccgg ctcgtcggca
      241 cgatgatggg ttttgcctac gcgggtctgt tcatcgcgaa tgtcggcggc gggtggcttg
      301 gacgcttcta tgaagtcctt ggaccgacgg gtttttgggc actgcaggcg gcgatcgcag
      361 ccattggatg cgcgggcgcg ctgttgctcc gtaaacgggt tgggaaactc ctgggacccg
      421 gtctagatgc gtcgtgatcg cgcgctcacc cagtgaacag aagtgcaaga gaaatgtcgt
      481 caacggtgcc gcttgccatc gaccttggtg ggaatacatt ataagtttga gcacacagct
      541 tgggagctca tgccgcacgt gtaagggccg ggtaaattag agggtagggc gatggccatt
      601 gtcgtgcgga ctttgtcgga acaggttttc gacattgtcc gggagcaaat cgtttcaggt
      661 cagatcgcaa gcgacttgcc gatcaggcaa gacgcgctcg ctgctgaact cggcgtcagc
      721 aagatcccgc tgcgcgaggc tcttgcgcgc ctcgagcagg aaggacttct gactagtcag
      781 gcgaaccgcg gctatttcgt gcgaccaatg agtctccacg aagccgacga gattttcgca
      841 cttcggcgcg cgatcgagcc ggaagctgca gcgcttgccg cgggcgccgc gaacaaggac
      901 gagcgcaagc aagttcgcga ggcatttgaa cgtctcgaca aagcgattaa cgagcgactg
      961 aacgaagtcg cacttcgaaa cagggaattt cacaccgcgc tcgttcgtcc cgcggcaagg
     1021 ccgctcacca tgcagctgat cgaacgtctc gctttgatgg ccgaacggta cgtgatcgcc
     1081 caccttgagc ccgcgggacg ggacgcccgt gcgcaccgtg aacatcgcgg cttgctgagg
     1141 gcgtggcttg cgggtgatca agagagcgtc aaggagcgat tgtcagcgca catccagggg
     1201 actctcgacg atctcaagca gcaattatcg gattgacgat ttgggtgttt cagccgcgta
     1261 gctcctctct ggacctaccg tacgacgaga ccagccggta gtagccgcgc ttgtcgtcag
     1321 caaacggacg ccaaagaccg ggccggcggt gttgccgtca tgaggaacga agcgcaccat
     1381 gatgctgctc ttctcgtcag tcagtggccg aggaacttga taatcaacat cgaagaactc
     1441 gcctggtcta accttgccga gatgctgtgt tgcgagtttc acgtcgtcca cgaagatgtc
     1501 gaaatcgcgc ggccgttcgt ctccccaata ggtcgcctcg aggaccagcg gccctggcct
     1561 cgtcttcagt gagaactcga agaaaccgcc cgagcgcgcg tcgcggcctt tgcgccagcg
     1621 ataactcacg gggtaggata tattcgaacg tagctggtga tcatgctccg actggttttc
     1681 cccgagatgc actgagtcga ctgaccgagc ttcgagctcg cgctggcgtg ccttttcact
     1741 ggcgaatgcg gattgttgct tctcccattc ggtcggcgtg aagcgcgtga agtatatcgc
     1801 acttcgccgg tcgtactggt tgaagaaggg aacgaagcga aggtctgccg gatgaacgat
     1861 ccctcgtgtc ctgtaactgg cctgctgcgc ttgttcggcc acgaaggctc cgaggatatc
     1921 gtttcccacc agcgctgggt cattgtgctc ccagggggcc gaactcgggc caaggtcacc
     1981 ggcaagaaca agaggaccac gcaagatggc gacgatccgg tcattgtctg gtgtaggctc
     2041 gatacgaagt tcgagcggca gattgagttg gatgacgtcg ccggctttcc agaagcgatc
     2101 aatcagcgcg tagcctcgtt cgacgttgaa aggcaccttt ttgccattaa tgtcgatgga
     2161 cgctttgtcc gccgcccatt gcggaatcct gagcgcaacc agaaagcgcc cagggcgccg
     2221 aagctttgtg agcgccaatc gcacttcgcc gtccatggga tagcgcgtgt tcagatcaat
     2281 cacggcgccg cgcttttccc actcggcctt cgcggggatg aataggttca ccagcaagct
     2341 gccgccacct tccgaaaaga ttgcgacacc atgtttcgag tggctctcca tgccacttcc
     2401 aacgcagcac cagaacggat ccttctttgg attcgaccac tcacgcggcg cgccgctcat
     2461 caacggtgtc atgtaggtga agctaccagt gacgggatgg tgagcggcca tcacatggtt
     2521 gagatgggca cgctcgtaaa agtccatcag cgcaccatcc ggagcccagg cgaacaaatg
     2581 ctgcgtgagc tttagcatgt tgtacgttgc gcagtgttcg caggtctgtt cggtgatgtg
     2641 cttcgaaatg gaatccggat cgaagaaata ttcacggtca ccattgccgc cgatggcgaa
     2701 gctgtgatga cgcaccacgc gcgaccagaa gaagcgcgcg gttcttgctt tgtccggcgc
     2761 atcggcaagc tcgtgaatgc gcgctaatcc gataatcttg ggaatttgcg tatttgaatg
     2821 gatgtcggcg agatcgtcag cgcccgcggc gagcgggtcg agcaccttgc gatcataaaa
     2881 tctattcgcg agacgcagcc atcgctcgtc gcgcgtcttc gcgtacagtt ccgcgaacgc
     2941 ctcgttaatt ccgccata
//
LOCUS       DASRBJ010000326         2931 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_293831,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000326 DASRBJ010000000
VERSION     DASRBJ010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2931
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293831"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1095
                     /locus_tag="VE968_09015"
     CDS             <1..1095
                     /locus_tag="VE968_09015"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing phosphodiesterase"
                     /protein_id="HZU51998.1"
                     /translation="LGPDAILARLSGDELAIALSDRGDSLRRAEEMAEAVLRVVTRPL
                     LFEDKIIQVGAFAGIASAAAKDARIPDVLRRADIAMDHARSGRVARPVWFDAGMERAL
                     IAHGEIEQGIRYGLEHDQFVPYFEPQVDLATGDIVGFEVLARWIHPLSGVIGPDVFIP
                     VAEEIGLIGRLSEAVIADALRAAADWDPKIKISVNISPFQLADGWLAQRIVRILAETG
                     FPAERLVIEITESSLFADLELARSIVTSLKNQGIRLALDDFGTGFSSLAHLRSLPFDI
                     IKIDRSFVTNIHMKRESSAIVRAVTTLAASLPVPVCVEGIENEESYNAVVRLGCEIGQ
                     GWYFGKPMQADQARDMLTGSARAIGKAVRA"
     gene            1201..1371
                     /locus_tag="VE968_09020"
     CDS             1201..1371
                     /locus_tag="VE968_09020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU51999.1"
                     /translation="MHYVRPSIAGHPMRFGRAPARLVDPAAVSPSTIVADLRLFAAAF
                     VAGFLFVSILFA"
     gene            complement(1384..2658)
                     /locus_tag="VE968_09025"
     CDS             complement(1384..2658)
                     /locus_tag="VE968_09025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZU52000.1"
                     /translation="MIQNVAHLLRSRRFVPLFATQFLGAFNDSLFKQAVVLFVTYQLY
                     SNPAKEFQFSAIAQGLFILPFFLFSALSGQLADDHDKAKLIRIIKLAEIGIMITGGAG
                     IVLANIPLMLAAVGLMGVHSTFFGPIKYAILPQHLGHDEVLGGTGLVEAGTYLAILGG
                     TILAGLLAPIPKIAAAATVGIAVLGLLAGRAVPPAPPAAERIPFNWHIIHASVELVSA
                     TLHIRRLFLAILSISFFWTIGAVLIIIFPPLVKNVLGANEQVASLFIAIFSIGIAIGS
                     VAINRLLKSEVSARFAPASVIAMGVFVLLLHFVALAWGKNDPGLTTLGNFILHPMAAL
                     MIVALLGVAITGGMFVVPLYAFLTTTVPKTETSRTVAANNIVNSGAMVIGSLVAIGLD
                     FAGIGPTAQLLLVAAMCLVAAWLGWKLHLACD"
     gene            2752..>2931
                     /locus_tag="VE968_09030"
     CDS             2752..>2931
                     /locus_tag="VE968_09030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013934415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HZU52001.1"
                     /translation="MLSLPNLLTLSRILAVPILVFLLWRPAPIDYAITFVLYCLVGIT
                     DYLDGYLARAWGSISK"
BASE COUNT          594 a          860 c          889 g          588 t
ORIGIN      
        1 cttggccccg acgcgatcct tgcccgcctc agcggtgacg agttagcaat tgcactgtcg
       61 gaccggggtg actcgttgcg gcgtgccgag gaaatggctg aagccgtgct gcgcgtggtc
      121 actcgcccgc tgctcttcga agacaagatc atccaggtcg gcgcgttcgc cggcattgcg
      181 tcagccgcgg caaaggacgc gcggatcccg gacgtcctgc gtcgagcgga cattgccatg
      241 gatcatgctc gaagtggccg ggtcgctcgg cccgtatggt tcgatgcggg catggagcgc
      301 gccttaatcg cgcacggcga aatcgagcag gggattcgct atgggctcga gcacgaccag
      361 ttcgttccct atttcgaacc gcaggtcgac cttgcaaccg gtgacatcgt cgggttcgag
      421 gtgcttgctc gctggatcca cccgctgtcg ggggtgatcg gtccggacgt tttcattccc
      481 gtagccgagg aaatcggcct catcggccgc ttgtcggagg cggtgatcgc ggacgcactc
      541 cgcgccgccg ccgactggga tccgaagatc aagatctccg tcaacatctc tccgtttcag
      601 cttgccgacg ggtggcttgc gcagcgcatc gtccggattc tcgccgaaac cggctttccg
      661 gcggaacgcc tggtgattga gattaccgaa agctcgctgt tcgccgatct cgaacttgca
      721 cggtcgatcg tcaccagcct caagaaccag ggaattcgtc tcgcgctcga tgatttcgga
      781 actggatttt cgtcacttgc ccaccttcgt tcgctaccct tcgatatcat caagattgat
      841 cgaagctttg ttaccaacat tcatatgaag cgagagagct cggccattgt ccgcgccgtg
      901 accacgcttg cggcttcact gccagtcccg gtgtgcgttg aaggtattga gaacgaagag
      961 tcttataatg ccgttgttcg gctcggctgc gagatcgggc aaggctggta cttcggaaag
     1021 ccgatgcagg ccgaccaggc gcgcgacatg ctcaccggct ccgcgcgcgc aataggcaag
     1081 gccgtccgag cctgaactga tcgataagcg atgttcctcc cgtcccgccg agggacggtt
     1141 ggagccgctt gtgcatcgcc gggtttgtgg catggtaaac gtcgcgttaa ggactttacc
     1201 atgcactatg ttcgaccaag cattgctggc catccgatgc gctttgggcg agcgccggct
     1261 cggctcgtag acccggcggc ggtcagcccg tcgaccatcg ttgcagacct gaggctgttc
     1321 gcggcggcat tcgttgccgg ctttctgttc gtatcgatat tgttcgctta agcgaggcgc
     1381 gccttagtcg caggcgaggt ggagcttcca tccaagccac gccgccacga ggcacattgc
     1441 ggcaaccagc agtaattggg cagtcggacc aatgccagcg aagtccagtc caatggcgac
     1501 gaggctgccg atcaccatcg cgcccgaatt cacgatattg tttgcagcaa ccgtgcgcga
     1561 agtctccgtc ttgggaacag ttgtcgtcag aaacgcataa agcggcacca caaacatccc
     1621 gccggtgatt gcgacgccga ggagcgcgac aatcatgagt gccgccatcg ggtgcagaat
     1681 gaagttgcca agcgtcgtga ggccggggtc gttcttgccc cacgcaagcg ccacaaagtg
     1741 cagcaggagc acgaacacgc ccattgcaat gaccgaggcc ggagcaaagc gcgccgatac
     1801 ttcgctcttc agcaagcggt tgattgcaac cgatccaatg gcgatcccga tcgagaagat
     1861 ggcgatgaag aggcttgcga cctgctcgtt tgcgccaagg acattcttta cgagcggcgg
     1921 gaagatgatg atcaggaccg cgccgatcgt ccagaagaaa ctgatcgaga ggatcgcgag
     1981 gaacagacgc cggatgtgca gtgtcgcact gacgagttcg actgatgcgt gaatgatatg
     2041 ccaattgaac gggatccgct ccgccgccgg cggagctggc ggaaccgcgc gtcctgcaag
     2101 aagcccaaga accgcgattc ccaccgtcgc cgcagcagcg atcttgggga ttggtgcaag
     2161 caggcccgca agaatcgtgc cgccgaggat tgcaaggtag gtccctgctt cgaccaagcc
     2221 cgttccgccg agcacttcgt catgcccgag gtgctggggc aggattgcat atttgattgg
     2281 accgaaaaac gtcgagtgca cccccatcag cccgacggca gcaagcatta aaggaatatt
     2341 ggcaagcacg atcccagcgc cgccggtgat cattattcca atctccgcaa gcttgatgat
     2401 tcggatgagc ttggccttgt catggtcatc cgcgagctga cccgagagcg ccgagaacag
     2461 gaagaagggg aggatgaaca gcccctgcgc aatcgcgcta aactggaact ccttcgccgg
     2521 gtttgaatag agctggtaag tcacgaacag gaccacagcc tgcttgaaca ggctgtcgtt
     2581 gaaggcgccc aggaactggg tcgcgaacaa cgggacgaac cgccgtgacc ggaggaggtg
     2641 agcgacgttc tgaatcaaaa ggttgccgag cagttcgtca tcggagttgt tgcggaggca
     2701 tagccagctt tgcgcaagcc gccaaaccct tctaactcgt cacgcggaac gatgctttca
     2761 ctgccgaact tactgacgct ttcacgcatc ctcgcggtgc cgatcctggt cttccttctg
     2821 tggcgaccag cgccgatcga ttatgcgatc acctttgttc tttactgtct cgttggcatt
     2881 acggactatc tcgatggcta tctcgcgcgg gcctggggaa gcatttcgaa g
//
LOCUS       DASRBJ010000327         2272 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_247166,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000327 DASRBJ010000000
VERSION     DASRBJ010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2272
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247166"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..785
                     /locus_tag="VE968_09035"
     CDS             <1..785
                     /locus_tag="VE968_09035"
                     /inference="COORDINATES: protein motif:HMM:NF012688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HZU52002.1"
                     /translation="PPGYTLVEFDASGQEYRWMAVCSGDETMLQLCLPGEDPHSYMGA
                     RIVERDYRELMRALKAEDEIIVKLAEDNRKLGKVGNLSLQYRTSAMKLRTVARVQYNI
                     PLELPQAQIIHATYQRTYVRVPEYWKVQIAETKRLGYVETLAGRRVQVRGNWGGEFGW
                     SMGSTAINYRIQGTGGDQKYLGICCLDELLTDVGAYFAWDLHDGIYFWVPDAKVQTFV
                     ARGKAILDNLPYKKAWGFVPPIPLPWDSKAGPGWGYLKDYTP"
     gene            796..993
                     /locus_tag="VE968_09040"
     CDS             796..993
                     /locus_tag="VE968_09040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52003.1"
                     /translation="MGLYLENVKTKKRFDVVKLKRAAPTEDQPKGKVIALILKGPTGV
                     EFEEEFDKDRFSKLGYEQKSD"
     gene            1009..1293
                     /locus_tag="VE968_09045"
     CDS             1009..1293
                     /locus_tag="VE968_09045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52004.1"
                     /translation="MPSSPGYQRDYKREAATAKARGEQGTGHDSGSAVRHRARREAIS
                     LGMIKADSPLDIDHKKPLVKGGAGTAKSNLRPRTPHANRSYHRNAHAGMI"
     gene            1293..1658
                     /locus_tag="VE968_09050"
     CDS             1293..1658
                     /locus_tag="VE968_09050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52005.1"
                     /translation="MDMPMFATETDLLLLGQEMAMRPGKSYRTSTALFIAGNLPVAAD
                     IADRKGWKRCERRGVWENGSERIVFVFAGDANRFRGYARGTKLYIGPGALISHGAQFI
                     DEIVAEREFKTEWVDGGQR"
     gene            1655..1843
                     /locus_tag="VE968_09055"
     CDS             1655..1843
                     /locus_tag="VE968_09055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52006.1"
                     /translation="MIERRIAQAASDVDRVSRMARDLQNDVRRQREESTRTLTRNPVK
                     KVLVGFSFATSALQGRTQ"
     gene            1863..2126
                     /locus_tag="VE968_09060"
     CDS             1863..2126
                     /locus_tag="VE968_09060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2312 domain-containing protein"
                     /protein_id="HZU52007.1"
                     /translation="MLAKVEDIKAESGQLRAFVERVERLEEEKRTIADDIKDVYAEAK
                     GNGFDVKIIRKVVSLRRQDVNKRREEEEILDLYLSALGMHASA"
BASE COUNT          487 a          663 c          725 g          397 t
ORIGIN      
        1 cgccgcctgg ctacacgttg gtggagttcg acgcctccgg ccaggagtac cgctggatgg
       61 cggtgtgctc gggcgacgag acgatgctgc agctatgcct gcccggcgag gatccacatt
      121 cctacatggg cgcccgcatc gtcgagcgcg actaccgcga gctcatgcgc gcgctgaagg
      181 ccgaggacga gataatcgtc aagctcgcgg aggataaccg caagctcggc aaggtcggga
      241 acctgtcgct gcagtaccgc acctcggcga tgaagctgcg caccgtcgcg cgcgtgcaat
      301 acaacatccc gctggaactt ccccaggccc agatcattca tgcgacatat caacgcacgt
      361 atgtgcgggt gccggaatac tggaaagtcc agatcgcgga gaccaagcgc cttggctatg
      421 ttgagacact tgccggcaga cgtgttcagg ttcggggcaa ctggggcggc gagttcggct
      481 ggtcgatggg ctcgaccgcc atcaattaca ggatccaggg cactggtggc gaccagaagt
      541 acctcggcat atgctgtctc gacgagctcc tgaccgacgt cggcgcgtat tttgcgtggg
      601 atctccacga cggcatctat ttctgggtgc ccgacgccaa ggttcaaacg ttcgtcgccc
      661 gcgggaaggc gatcctcgac aacctgccgt acaagaaggc ctggggtttc gtcccgccga
      721 ttccgctgcc atgggattcc aaggcaggcc cgggctgggg atatcttaag gactacacac
      781 cgtaggggtc atacgatggg tctatatctc gagaacgtca aaaccaagaa gcggtttgac
      841 gtggtgaagc tgaagcgggc ggcgccgacg gaggaccagc cgaagggtaa ggtcatcgcg
      901 ctgattttga agggtccgac gggcgtcgaa ttcgaggaag agttcgacaa ggaccgcttc
      961 agtaagctag gctacgagca gaaatcggac tgaacgcgtg aggggatcat gccgtcatcg
     1021 cctggttacc agcgcgacta taagcgcgag gctgccactg ccaaggcgcg gggcgagcag
     1081 ggcaccggcc acgactccgg ctcggccgtg cgccaccgcg cgcgccgcga agcgatcagc
     1141 ctcggcatga tcaaggccga ttcccctctc gacatcgacc acaagaagcc gttggtgaag
     1201 ggcggcgctg gcacggcgaa gagcaacttg cggccacgca ctccgcacgc caaccgctcc
     1261 tatcatcgta acgcacatgc agggatgatc tgatggacat gcccatgttc gcgaccgaga
     1321 cggatttgct cctgctgggc caggaaatgg ccatgcgccc cggtaagtcc tatcgaacga
     1381 gcaccgccct cttcattgcg ggcaacctgc cggttgcggc cgacatcgcc gatcggaagg
     1441 gctggaagcg ctgcgagcgg cgtggtgttt gggagaatgg ctcggagcgg atcgtcttcg
     1501 tgttcgccgg cgacgccaac cgattccgcg gctacgcgcg cggcaccaag ctttacattg
     1561 gacccggtgc gctgatctcg cacggcgcgc agttcatcga cgagatcgtc gccgagcgcg
     1621 agttcaagac cgaatgggtc gatggaggcc agcgatgatc gagcgtcgaa tcgcccaagc
     1681 tgcaagcgat gtagaccgcg tcagtcgcat ggcacgcgat ctgcagaatg acgtgcgccg
     1741 acaacgcgaa gaatccacgc ggacgctcac gcgcaacccg gtgaaaaaag tgttagtcgg
     1801 ctttagtttc gccacaagtg cgctgcaagg tcgcacgcaa tagggtcgta tccggaggtc
     1861 gtatgttagc caaggttgag gacatcaaag cggagtccgg tcagctccgc gctttcgtcg
     1921 aacgcgtcga gcggctcgag gaagagaagc gcacgatcgc ggatgacatc aaggatgtat
     1981 acgcggaggc caagggcaac ggcttcgacg tgaagatcat tcgcaaagtg gtttcgttgc
     2041 gtcgtcaaga cgtcaacaaa cgtagggagg aagaagagat tctcgatctc tacttgtccg
     2101 cgctcggcat gcacgccagc gcttaaccag gagcagtgat gaccacgcac atcatgttag
     2161 atctcgagac ctgggggaag ggccctcagg cagccatcat ccagatcgga gcggtcaagt
     2221 tcgatccctc cctccccgtc ggggaacgca ttacagacaa gtttaacgtt gc
//
LOCUS       DASRBJ010000328         3966 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_754903,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000328 DASRBJ010000000
VERSION     DASRBJ010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3966
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_754903"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..252)
                     /locus_tag="VE968_09065"
     CDS             complement(<1..252)
                     /locus_tag="VE968_09065"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671602.1"
                     /note="Catalyzes the synthesis of acetoacetyl coenzyme A
                     from two molecules of acetyl coenzyme A. It can also act
                     as a thiolase, catalyzing the reverse reaction and
                     generating two-carbon units from the four-carbon product
                     of fatty acid oxidation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HZU52008.1"
                     /translation="MATQASDPTVILSIARTPMGSMQGSLSDASATDLGATAVKAAVE
                     RAGVSGDDIDRIYMGCVLPAGLGQAPARQAAIKAGLPKSV"
     gene            358..1515
                     /locus_tag="VE968_09070"
     CDS             358..1515
                     /locus_tag="VE968_09070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HZU52009.1"
                     /translation="MSEPGLDFDLGEMAETIRDTTRRFARERIEPIAAEIDAKDEFPR
                     FLWPQMGELGLHGITVEEEWGGLGLGYLEHVVAQEEVARASGSVGLSYGAHSNLCVNQ
                     IRRWANPEQKRKYLPKLVSGEHVGALAMSESGAGSDVVGMKLKADKSGNGYRLNGTKF
                     WITNGSEADTLVVYAKTDMEAGSRGITAFIIEKDMEGFSTGQKVDKLGLRGSPTAELV
                     FNDCFVPPENILGAEGKGVEVLMSGLDYERTVLAGMQIGIMQACLDVVLPYVRDRKQF
                     GKPIGSFQLMQAKIADMYVALNSARAYVYQVARACDAGKTTRYDAAGAILLASENAVK
                     VANEAVQALGGAGYTKDWPVERYYRDAKLLDIGAGTNEIRRMLIGREVIGA"
     gene            complement(1836..>3966)
                     /locus_tag="VE968_09075"
     CDS             complement(1836..>3966)
                     /locus_tag="VE968_09075"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HZU52010.1"
                     /translation="CCRHWQNTSPESARMNRYAFFVAISLAMLGACHLTNEGNSGTEQ
                     KSVAGSQSGIDKSLMDPTVKPGDDFDKYANGAWEKNAVIPPDKSNISVFSVINDEAQK
                     REAALVNDIVNSHPAAGSDDAKIADYYKAYMDTGAIEKRGLAPIQPDLNRIQAIADKG
                     ALAEAIGRTLRADADPLNATNFHTENLFGVFVTQAFNDPSKTVPYILQGGLGLPDRDY
                     YVSSDPAMAKLRGDYAPYVAKILALAGFQNAQARAQKIVALETKLAQAHETLEASQDS
                     TKADNPWKRADFDKKAPGLDWGRLLAAAQLGNQQDFIIWQPGAVIKTAALVNSEPLDV
                     WKDWLAFHRVNQMTAVLPKQFDDAHFAFYGTEINGQPQQQSRQKRALASLDAWLGDAV
                     GKRYVARYFPPSSKADIDGMVKNIKAALEKRIDALAWMAPATKAEAKKKVATMAVGIG
                     YPDKWRDYGSLDVRTDDAFGNLDRAELANYQYQLSKIGKPVDKNEWWLEPQTVNAQNQ
                     PLQNSLNFPAAILDKGFYDPTEDSAAKYGAIGSVIGHEISHSFDNLGSTFDATGKLRN
                     WWTQADFAHFNQAAAALAAQYDAYEALPGLHLNGKQELGENIADVAGLAAAYDAWKAS
                     LGGKPSPIIDGLTGDQRFFLAYAQSHRGKLREAALRARVATDVHAPGPWRVQTVRNID
                     EWYPAFKVQPGQKLYLAPGKRITVWGS"
BASE COUNT          785 a         1156 c         1203 g          822 t
ORIGIN      
        1 aacggacttt ggaaggcctg ccttgattgc ggcttgccgc gcgggcgcct ggccaaggcc
       61 agctggcagg acgcagccca tgtagatgcg gtcgatgtcg tcacccgaga cgccggcgcg
      121 ctcgacggct gcttttaccg cagttgcgcc aaggtccgtt gccgacgcat ccgaaagcga
      181 gccctgcatt gagcccatcg gcgtgcgagc gatcgaaaga atgacggtgg ggtcagaagc
      241 ttgcgtggcc attagcctac tccggaatcg atttgctgcg ccgcacataa gactgcgaag
      301 gcggttgttc aaacgcttcc cgctctgcta gccggatagg ccagacggga gagaaatatg
      361 tccgagccag gcctcgactt cgaccttggc gaaatggccg agacgatccg cgacacgacg
      421 cgacgatttg cgagggaaag gatcgaaccg atcgctgcgg aaattgacgc gaaagacgag
      481 tttccgcgat tcctgtggcc gcagatgggg gaacttggcc ttcacggaat caccgtcgag
      541 gaagagtggg gtggcctcgg ccttggctat ctcgaacatg tcgtcgcaca ggaagaagtg
      601 gcgcgtgcgt ctggctcggt tggtctgagc tacggcgctc attcgaacct ttgcgtcaac
      661 cagatacgac gctgggcaaa ccccgagcag aagcgcaagt acctcccaaa gttggttagc
      721 ggcgagcatg tcggcgccct tgcaatgagc gaatccggcg ccggcagcga tgtcgttgga
      781 atgaagctca aggccgacaa gagcggcaac ggctatcgcc tgaacggcac gaaattctgg
      841 attaccaatg gttctgaagc cgataccctc gtggtttacg cgaagaccga catggaggcg
      901 ggcagtcggg gcataacggc cttcatcatc gaaaaggaca tggaaggctt ttcgaccggt
      961 cagaaggtcg acaaactcgg gcttcggggc tcaccaacgg ccgagcttgt cttcaatgac
     1021 tgcttcgttc ctcccgagaa tattctcggc gcggagggca agggtgtcga ggtgctgatg
     1081 agcggccttg actatgagcg taccgttctt gccggaatgc agattggaat catgcaagcc
     1141 tgcctcgatg tggtgcttcc ctatgtccgg gaccgtaagc agttcggaaa gccgatcggc
     1201 tcattccagc tgatgcaggc aaagattgcc gacatgtacg tcgctctcaa cagcgctcgc
     1261 gcctatgtct atcaggttgc ccgcgcatgc gatgccggta agacgacgcg ctacgacgct
     1321 gccggtgcaa tcctcttggc cagtgagaac gccgtgaagg tagcgaacga agccgttcag
     1381 gcccttggcg gcgccggata caccaaggac tggcccgtcg aacgctatta tcgcgacgcg
     1441 aaactcctcg acattggcgc cgggacaaat gagatccggc ggatgttgat cggtcgcgag
     1501 gtaattggag cctagatcac tccgttcgac ggcactcaaa cgatttcacg atcttggcag
     1561 ctgggctgcc ttcttgagcg caagcgcgat ccctccgccg atgttgcgcg gaagcgtcaa
     1621 ttcctcggtc catgccatgg ctgccgtgag cacaaagaac cgacttgcaa caggcgagat
     1681 cttccaagcc gcaacagcgc aagggccggt cggaacaatg gtcggcaggc ggccacgagg
     1741 gcttactacc gacgtcgcac caaaggatgc cgccaaggcc gccgcgacgc gcacagcgcc
     1801 ttgccgctga ctcttttagc ctagtcgaac cggctctagc tgccccagac ggtgatgcgc
     1861 ttcccgggcg cgagatagag cttttggcca ggctgaactt tgaaggctgg gtaccattcg
     1921 tcgatgttgc ggaccgtctg cacacgccac ggaccaggcg cgtggacatc cgtcgcaacg
     1981 cgtgcccgaa gagcagcttc gcggagcttg ccgcggtgcg attgggcata agcgaggaaa
     2041 aagcgctggt ccccggtgag gccgtcgatg atcggcgagg gctttccacc gagcgacgct
     2101 ttccaggcgt cataggccgc cgctaacccg gcaacgtcgg cgatgttttc gccgagctcc
     2161 tgtttgccgt tgaggtgaag acccggaaga gcttcatagg cgtcgtattg cgcggcaagc
     2221 gcggcagcgg cctggttgaa gtgcgcgaag tccgcttggg tccaccagtt ccgaagcttc
     2281 cccgtggcat cgaaggttga tccgagattg tcgaagctat ggcttatttc atgcccaatg
     2341 accgacccga tcgcgccata tttcgcagca gagtcctccg tgggatcata gaagcccttg
     2401 tcgagtatcg ccgcagggaa attgagcgag ttctgtagcg gctggttctg ggcattcacc
     2461 gtttgcggtt cgagccacca ttcattcttg tcgactggtt tgccaatctt cgagagctga
     2521 tactggtaat tggcgagttc ggcgcggtcc agattgccga acgcgtcgtc ggtgcgaacg
     2581 tccaaggagc catagtcgcg ccacttgtcg ggatagccaa tcccgacggc catggtagcc
     2641 accttcttct tggcttcggc cttcgtcgcc ggtgccatcc aggcaagcgc atcgatccgt
     2701 ttctcgagcg cggccttgat gttcttcacc atgccatcaa tgtctgcctt cgaagacggt
     2761 gggaaatagc gcgcgacgta gcgcttcccg acggcgtcgc cgagccacgc atcaagcgac
     2821 gccagcgcgc gcttctgccg actctgttgc tgtggttgtc cgttgatctc ggtcccgtag
     2881 aaagcgaagt gcgcatcatc aaattgcttc gggagcactg cggtcatctg gttaacccgg
     2941 tggaacgcaa gccaatcctt ccacacatca agcggctccg agttgaccaa agccgctgtc
     3001 ttgatgacgg cgcccggctg ccagataatg aagtcctgct ggttcccgag ctgagccgca
     3061 gcaagcagcc ttccccagtc aagacccggc gccttcttgt cgaagtccgc gcgcttccac
     3121 ggattgtcag ccttggtgct gtcctggctt gcttcgagtg tctcatgtgc ctgcgcgagc
     3181 ttggtttcca gcgcgacgat tttctgcgcc cgcgcctgag cattttggaa acccgcaagg
     3241 gcgaggattt ttgccacata gggcgcataa tcgccgcgaa gcttcgccat cgccggatca
     3301 gacgagacat aatagtcgcg atctggaagc ccaagcccgc cctgcaagat gtaggggacc
     3361 gtcttcgagg gatcattgaa tgcctgagta acaaagaccc cgaagaggtt ttcggtatgg
     3421 aagttcgtcg cgttcagcgg atcggcatcg gccctgaggg tccgcccaat ggcttcggcg
     3481 agtgcgccct tgtcggcaat tgcctggatg cggttgagat cgggctgaat tggcgcaagc
     3541 ccgcgcttct cgatcgcgcc agtgtccatg tacgccttgt agtagtcggc gatcttggcg
     3601 tcgtcggaac ccgccgcggg atgtgagttc acgatgtcgt tgacgagcgc cgcctcgcgc
     3661 ttctgcgctt cgtcgttgat caccgagaac acagagatgt tcgatttgtc aggagggatt
     3721 acggcattct tctcccacgc tccgttcgca tatttgtcaa aatcatcgcc gggcttgacg
     3781 gtcggatcca tcaacgactt gtcgattccc gactgggatc ccgcgacact cttctgttcg
     3841 gtgccactat ttccctcgtt tgttagatgg cacgcaccaa gcattgccaa agagatcgca
     3901 acaaaaaagg cgtaacggtt cattcgagca ctctccggac tcgtgttttg ccaatgcctg
     3961 cagcag
//
LOCUS       DASRBJ010000329         2928 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_247968,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000329 DASRBJ010000000
VERSION     DASRBJ010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2928
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247968"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..305
                     /locus_tag="VE968_09080"
     CDS             <1..305
                     /locus_tag="VE968_09080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HZU52011.1"
                     /translation="ARLAVAGITVDECGFTHLAYAQEIAGVMLRRQQAQAVVAARKTL
                     VEGAVGMVEMALASLSEKQVVDLDDERRAAMVSNLMVVLCGERDTQPVVNTGTLYQ"
     gene            312..518
                     /locus_tag="VE968_09085"
     CDS             312..518
                     /locus_tag="VE968_09085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010214695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system HicB family antitoxin"
                     /protein_id="HZU52012.1"
                     /translation="MPSDDRKAYPLRVDAALWSAVERCAASELRSVNAQVECLLREAL
                     AARGVRLKAPALRKRGRPPKESRR"
     gene            521..763
                     /locus_tag="VE968_09090"
     CDS             521..763
                     /locus_tag="VE968_09090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008993651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52013.1"
                     /translation="MSPEWFAPRRYGYGAGLPISWQGWALTAGYLLLLGIGSAVMSYS
                     SLAFISMAAIVTIAFLVVCARTTRGGWRWRWGRSDD"
     gene            complement(760..2556)
                     /locus_tag="VE968_09095"
     CDS             complement(760..2556)
                     /locus_tag="VE968_09095"
                     /inference="COORDINATES: protein motif:HMM:NF025381.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4231 domain-containing protein"
                     /protein_id="HZU52014.1"
                     /translation="MRTRPPAVPFVLAVGVTGHRAEVLAEESLPILRNRIRDVLVQIH
                     RSGCALLETERDCYAPSAPQLRFVSPIADGADQIAAEVALELGWELQVVLPFDRATYR
                     ASLANHGARERFDALLGRASCVLELPGDPHHDLDAYVMTGRATVAHCDLLIAIWDGRP
                     PRGRGGTGEVVQLALTRGTAIIHVALSDGGDTRILWSAFDPTVVTVADDPGVARPLDS
                     ADVEALLRGLLIPPPDQQERDFLKRFQAERLRRIRARIEYPLLLTAAGVRPFRARDLT
                     SKHAEAQIREEWQRYRVGCAEAHNISAPIALLEDAYSWADRLATHFAQTYRSGHIFNF
                     VLGGFAVCLGLAAFIAPNVKFEEAGLELLITVAIILNAIVGKRQEWHRRWLDYRQLAE
                     RLRPMRTLKLLGIAAPDPPGTETNPVPKRWIDWYASGIWRAMGCPSGAIDRACAVRLG
                     KAIAEHEVEPQVGYHERNSRQIEMLDHRLEQTGFVLFAATVLVTVSTLVGLGVGSNFV
                     VSYGNWLTLVSAGFPALGTAIFGIRFQGDFGGDAIRSMATADTLRQIDRELRKDVTLS
                     RAADLAEQAARIMLSDLDEWRLVNQQRDLSVG"
     gene            complement(2618..>2928)
                     /locus_tag="VE968_09100"
     CDS             complement(2618..>2928)
                     /locus_tag="VE968_09100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52015.1"
                     /translation="FAASPIFATPAAKAEIDAKSVAGQNLTTLTFTDHNWDKDTLSVV
                     LKFNNAPPMDPIIQNGGGGPPRGSNNFLPTSAGAFAVDLAIALAIGVVIGLMLRRLAK
                     "
BASE COUNT          563 a          896 c          925 g          544 t
ORIGIN      
        1 tggcgcggct tgccgtcgcc ggaatcacgg tcgatgagtg cggcttcacg caccttgcct
       61 acgcccagga aatcgcaggg gtgatgcttc gtcgacagca agcacaagcc gtcgtcgcgg
      121 cgcgcaagac gctggtcgag ggcgcggtcg ggatggttga aatggcgctt gcctcgcttt
      181 cggagaagca ggtcgtcgat cttgacgacg agcgacgcgc cgcaatggtt tcaaacctca
      241 tggtggtgct gtgcggtgaa cgtgacacac agcctgtcgt caacaccggc acgctctatc
      301 agtgacgaca agtgccttcc gatgatcgaa aagcctaccc gttgcgcgtg gacgccgctc
      361 tatggtccgc tgtcgagcgc tgcgcggcat ccgagctgcg cagcgtcaat gcgcaggttg
      421 aatgtttgct gcgagaggca cttgcggctc ggggtgtccg gttgaaggcg cccgccctca
      481 ggaagcgcgg ccgaccgcca aaggagagcc gccgttgaaa gtgtcgcccg aatggttcgc
      541 gccgaggcgg tacggctatg gcgctggttt gccgataagc tggcagggtt gggcgctgac
      601 ggccggctac cttctactgc tgggtatcgg cagtgccgtg atgtcctact cgtcactcgc
      661 cttcatcagc atggcggcga tagtcacgat agcctttctc gtcgtttgcg cgcgcacaac
      721 ccgcggcggt tggcgctggc gctggggcag aagcgacgat tagcccaccg acaagtcacg
      781 ctgctggttc acaagacgcc actcatcgag atcggagagc attatccgcg cggcttgctc
      841 cgcaaggtct gcggcacgcg acaaggtcac atccttgcgc agctcccgat cgatctggcg
      901 gagcgtgtca gcggtcgcca tcgaccggat cgcgtcgcca ccgaagtcac cttggaatcg
      961 gattccgaat atcgccgtgc ctagcgccgg aaatcccgct gagacgagtg tcagccaatt
     1021 gccgtatgaa acgacgaaat tggacccgac accgagcccg acaagagtgg aaactgtgac
     1081 gagaacggtt gccgcgaaaa gcacgaatcc cgtttgctcg agacggtggt caagcatctc
     1141 gatttgccgg gagttgcgct cgtgatagcc gacctgcggc tcgacttcat gttcggcgat
     1201 ggccttgccg aggcgaacgg cacaggcgcg atcgatggcg ccggacgggc agcccatcgc
     1261 tcgccagatc ccactcgcgt accaatcgat ccaccgtttg ggaaccgggt ttgtttcagt
     1321 gcccggtggg tccggcgccg ctatccctag cagcttgagg gttcgcatcg ggcggagccg
     1381 ctcggcaagt tgccggtagt ccaaccagcg ccggtgccat tcctggcgtt tgccgacgat
     1441 tgcattgagg atgatcgcaa cagtgatgag cagttcaagc ccagcctctt cgaacttcac
     1501 gttgggcgcg atgaatgcgg caaggccgag gcatacggcg aagccaccga gcacgaagtt
     1561 gaaaatatgc ccgctgcggt aagtttgcgc gaaatgcgtc gccagccggt cggcccagct
     1621 ataggcatcc tcgaggagtg cgatcggcgc cgagatattg tgtgcttctg cgcagcccac
     1681 tcggtagcgt tgccactcct cgcgaatctg cgcttccgca tgtttactgg tgaggtcgcg
     1741 cgctcggaat gggcgaacgc ccgcagccgt aagaagcagc ggatattcga tgcgggcgcg
     1801 gatccgccga agccgttcag cttggaagcg cttcaggaaa tcgcgctctt gttgatctgg
     1861 tggcgggatc aagaggcccc gcagcagcgc ttcgacatca gctgaatcga gcggtcgcgc
     1921 tacccccggg tcatcggcga cggtcacgac ggtcggatca aaggcgctcc acaatattcg
     1981 tgtgtcgcct ccatccgata gtgcaacatg gatgatggcc gtcccgcggg tcaatgccaa
     2041 ttgcacgacc tcgccggtgc ctccacgccc gcgcggcgga cggccatccc aaattgcaat
     2101 gagcaaatcg cagtgggcaa cggtcgcgcg acccgtcatc acataggcat cgagatcgtg
     2161 gtgaggatcg ccaggcagct cgagcacgca gctcgcgcgc ccgagcagcg catcgaagcg
     2221 ctctcgagcg ccgtggttcg cgaggctggc gcgatatgta gcccggtcaa acggaagcac
     2281 gacctgcaat tcccagccga gctccaaagc gacttctgca gcgatctgat ccgcgccatc
     2341 ggctatcggc gagacaaacc gcaactgcgg cgcactcggc gcatagcaat cgcgctcggt
     2401 ttcgagcagc gcgcatccgg atcggtggat ctgaacgagc acgtctcgga tgcgattgcg
     2461 caaaatgggc agcgactctt cggcaagcac ctcggcgcga tgtcccgtga cgccgacggc
     2521 aagtacaaaa gggaccgcgg gcggtctcgt tcgcacggag ccgctcaccc cgcccgaagt
     2581 cgcgctggag agcggtcgat gaagaatagc agtcccccta tttagctagc cggcgaagca
     2641 tcaagcctat cacgaccccg attgcgagcg ctattgccag atcgaccgca aacgctcctg
     2701 cactggtcgg caagaagtta tttgatcccc ttggcggccc gccgccaccg ttctggatga
     2761 tcgggtccat cggtggcgcg ttgttgaact tcaacaccac actcagcgtg tccttgtccc
     2821 aattatgatc cgtgaaggtc agggtggtga gattctgacc agcgacgctc ttggcatcga
     2881 tctcggcttt cgccgccggc gtggcgaaga ttggactagc tgcaaatg
//
LOCUS       DASRBJ010000330         8100 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_144761,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000330 DASRBJ010000000
VERSION     DASRBJ010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8100
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144761"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..405
                     /locus_tag="VE968_09105"
     CDS             <1..405
                     /locus_tag="VE968_09105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HZU52016.1"
                     /translation="LGADDYVTKPFDTEELLARVRASLRQRLASETERQVVEAGEVSI
                     DLLARIVRRQHREVHVTPKEWELLAELAKHPGRVLTHESLLRKIWGPAHVGQTEYLRV
                     AIRALRQKLEDEPSQPRLIVNEPGIGYRLIIN"
     gene            complement(412..3021)
                     /locus_tag="VE968_09110"
     CDS             complement(412..3021)
                     /locus_tag="VE968_09110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017500191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HZU52017.1"
                     /translation="MPRSQALGRPSFLSGGGEVRDLIAEFDWGSTSLGPINDWPAVVK
                     TTVALILQSPVPVVTLWGDAGVMIYNDAYAQFAGARHPQILGLDVLDAWPEVADWNRN
                     VMETVFHRGETISVQDEKLVLERHGKAEPAWLNLDYSPVVDDDGNIAAVIAIVVETTA
                     KVRAEQRISGERERLRRMFDAAPGFTALLEGKDHRFVMANAAYERLVGRSVIGKSVHE
                     ALPEVAEQGFISLLDNVAQSGEPFIGRAIPVRLGSADETQEKFVDFVYQPIADEDGKP
                     IGIFVQGYDVTDHKRAEALRIVHNEVLELAIEDKPLGKTLEALARTVESHSRSGVIAS
                     ILLLDRDGRHLRHGAAPSLPEEYNKAIDGLEIGPDVGSCGTAAFTGQAVFVSDIANDP
                     KWKDFRDLAAEHGLGACWSVPIVSGTGKVLGTFAMYHREPREPVPGDLELVDLITRSA
                     SMVISRKQAETALRELNETLEARVVEEIAERRAAEVALQQAQKMESIGKLTGGVAHDF
                     NNLLQIISGNLQLLQAEIPPGGKAERRITNAMAGVQRGAKLASQLLAFGRRQPLEPKV
                     INFGRLVGGMEDLLRRSIGEGVEMETIVSPSLWNAFADPTQVENAILNLAINARDAMD
                     GMGKLTIEVRNAHLDHHYSQQNPGVEPGQYVMLAVSDTGSGMSSELLDRVFEPFFTTK
                     PEGKGSGLGLSMVYGFAKQSGGHVKIYSEIGEGTTVRLYLPRVHENEDIAAGPELVEA
                     GGGSETILVVEDDAEVRSTVTDLLRELGYKVLTAKDASSAVPILESGVKIDLLFTDVV
                     MPGPVRSPELARKARELIPGIAILFTSGYTENAVVHGGRLDPGVNLLAKPYSRAALAT
                     RIRDALKRTALVH"
     gene            complement(3133..3390)
                     /locus_tag="VE968_09115"
     CDS             complement(3133..3390)
                     /locus_tag="VE968_09115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52018.1"
                     /translation="MSRLAAEPTAATLKVQPAAVELLERDWVLMNWALKHFDRNGDLL
                     LEPDELRVAAEAFRTLADANHDGRVTPQEYAAAREEILKHD"
     gene            complement(3460..5820)
                     /locus_tag="VE968_09120"
     CDS             complement(3460..5820)
                     /locus_tag="VE968_09120"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HZU52019.1"
                     /translation="MGEQQPPNAAALPPDLPHSMFTGPGLLALADLLPVMTAFVDRDE
                     KFRFVNKPYAEWLGVPRKDVLGRSMREILGDKNYAERKPLIDAALAGERKFFAATYEH
                     PERGRLALTIDYVPWITGDAIEAEGICIVLNDVTEQRLAERSIRESEERFRRIANSAP
                     ALMWVTRIDHVRDFVNDAYAEFACGPGSAKDEARLLDWRERIHPDDVERIIAESVAGE
                     ASGADFTLEGRYRRYDGEYRWLRTVSQPRFGPDGELVGFIGVGTDITVAKEAELELRR
                     QVEERTAQLAASEAQFRAVFEAALEVMVLLEPDGTVLAVNNRRETWRMEEPSRAIGQK
                     IWDAPTMRAYPQHVALMRKAVAAAASGEVFTTDVKMERDGVATAYLDVSVQPVRAADG
                     KIIYLLFEARDVTDLKSAQEQLRQSQKMEALGQLTGGIAHDFNNLLTVVVGGLDIITK
                     RAEEPKLKRYAENALAAAERGARLTGQLLAFSRVQRLEVRPTYVAPLIENMRPLLRNV
                     LGPGINKKFDLDEAMIPVMADPTQLEVAILNLAINARDAMPDGGVLTFSTTPVRIEGD
                     GELDDGDYIELCISDTGVGMPQEVADRAFEPFFTTKEVGKGTGLGLSMVYGMARQSGG
                     AARIESSPGKGTSVKLLFRTADSTISEVSVAADDPVAATVPLAPISVLVIDDDPDVRG
                     FIANSLEEQGYRVREASDGTQGLAALDRETPDLVILDFIMPGLSGAEVARRIRINRPE
                     QPILFVSGYSETEAVKRTAPDAPLLAKPFRADALQKAVRGAIAAST"
     gene            complement(6010..7815)
                     /gene="lepA"
                     /locus_tag="VE968_09125"
     CDS             complement(6010..7815)
                     /gene="lepA"
                     /locus_tag="VE968_09125"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HZU52020.1"
                     /translation="MSADISRIRNFSIIAHIDHGKSTLADRLIQACGGLSDREMQAQV
                     LDNMDIERERGITIKAQTVRLDWRGYELNLMDTPGHVDFAYEVSRSLAACEGALLVVD
                     AAQGVEAQTLANVYQSIEHDHEIVPVINKIDLPAADPEGVRQEIEEIIGLDASDAVLA
                     SAKTGVGITEVLQAIVDKVPPPKGDSAKPLKAMLVDSWYDPYLGVVILVRVIDGTLRK
                     GMAVKFMQAGTTHLVDRVGVFRPKIEHLPELGAGEVGFITAQIKEVAETRVGDTITDA
                     KRPAQEPLPGFKEVQPVVFCGLFPVDANDFEKLRDSLYKLRLNDASFSFEMETSAALG
                     FGFRCGFLGLLHLEIIQERLAREYDLDLITTAPSVVYQVRLRSGETLHIHNPADWPDP
                     SLIEVVEEPWIDATIYVPDSYLGAVLKLCQDRRGIQKDLSYVGTGSHARAMLRYELPL
                     NEVVFDFYDRLKSISRGYASFDYHQVGHREGDLVKMSILVNNEAVDALSMIVHRANAE
                     ARGRGMCERLKDLIPRHLFKIPIQAAIGGKIIARETIAALRKDVTAKCYGGDATRKRK
                     LLEKQKEGKKRMREYGNVSIPQEAFIAALRMGDEA"
BASE COUNT         1545 a         2453 c         2394 g         1708 t
ORIGIN      
        1 ctcggcgccg acgattacgt caccaagccg ttcgataccg aggagctgct cgcacgcgtt
       61 cgcgcgtcgc ttcggcaaag actcgcgtcg gaaaccgaac gacaagtcgt cgaagcaggc
      121 gaggtttcaa tcgacctcct cgcccggatc gtgcgccgcc aacatcggga ggtccacgtc
      181 acgcccaagg agtgggaact ccttgcggaa cttgcaaagc atcccggccg agtgctgacg
      241 catgaaagcc tgcttcgaaa gatctgggga ccagcgcatg ttggccagac ggaatatttg
      301 cgggttgcga tccgagcgct ccgtcagaag ctcgaggacg agccatccca gccgagattg
      361 atcgtcaatg agcctggcat cggctatcgt ctcatcatca attgacggcg cttagtgtac
      421 gagcgctgtt cgcttgagtg catcgcggat gcgggttgcg agcgccgctc ggctataggg
      481 cttggcgagc aagttgacgc ctggatcgag ccgcccgccg tgcacgacgg cattttccgt
      541 ataccctgac gtaaaaagga ttgcgattcc ggggatgagc tctcgcgcct tgcgcgcaag
      601 ctcaggactt cgcaccggtc ccggcattac cacatccgtg aacagcaggt cgattttgac
      661 gccgctttcg aggatcggaa ccgcacttga ggcatccttg gcggtcagca ccttgtaccc
      721 aagctcgcgc agcaagtccg tgacggtcga acgcacttcc gcgtcgtcct cgacaacgag
      781 gatggtttcc gagcctccgc ccgcttcgac gagctcaggg ccggcggcaa tatcttcgtt
      841 ttcgtggacc cgcggaagat agagtcggac ggtcgttcct tcgccaatct cgctgtagat
      901 ttttacgtgg ccacccgact gcttggcaaa accgtagacc atcgacagtc cgagcccgga
      961 gcctttgccc tcgggcttcg tcgtgaagaa tggctcgaag acgcgatcga gtagctcgga
     1021 agacatgccg ctgccggtat cgctgacggc gagcatcaca tattgaccgg gctcgactcc
     1081 cgggttctgc tgggaataat gatgatcgag atgggcattg cggacttcga ttgtcagctt
     1141 gcccattccg tccattgcat cgcgcgcgtt gatggcaagg ttgagaatgg cgttttcgac
     1201 ctgcgtcggg tcagcaaagg cattccagag gcttggcgac acgatcgtct ccatctcgac
     1261 accttcgccg atgcttcggc gaagaagatc ttccatcccg ccaaccagcc gaccgaaatt
     1321 gatgaccttg ggctcgagcg gctggcggcg gccgaacgcg agcagctggc ttgcaagctt
     1381 tgctccccgc tgcacgccgg ccatcgcatt ggtaattcgt cgctcggcct tgcccccggg
     1441 tggaatttcc gcctggagta gctggaggtt gcccgaaatg atctggagca gattgttgaa
     1501 atcgtgtgca acgccgcccg tgagcttgcc tatcgattcc attttctgcg cctgctgcaa
     1561 cgcgacctct gccgcgcgcc gctcggcaat ctcctcgaca acgcgcgctt caagcgtctc
     1621 gttgagctct cggagtgctg tctcagcctg ttttcgactg atgaccattg aggcgcttcg
     1681 ggtgatcaga tcgaccagct cgaggtcacc tggcaccggc tcgcgcggct cgcggtggta
     1741 catcgcgaag gtccccagca ccttgccggt tccactgacg atcgggactg accagcaggc
     1801 gccaagcccg tgctcggcag cgaggtcgcg gaagtccttc cacttgggat cgttcgctat
     1861 gtcggacacg aaaacggctt ggccggtgaa ggcagcagtg ccgcaggagc caacgtcggg
     1921 accaatctca agaccgtcga tcgccttgtt gtattcctct ggaagactgg gcgcagcgcc
     1981 gtggcgcaga tgacgtccgt cgcggtcgag cagcaggatt gacgcgatta cgccggagcg
     2041 cgaatgggat tccacggtac gtgcaagcgc ctcgagcgtc tttccgagcg gcttgtcctc
     2101 gatcgcgagt tcgagcactt cattgtgaac gatccgcagt gcctcggcgc gcttgtgatc
     2161 ggtgacatca tatccctgaa cgaaaatgcc gatcggtttg ccgtcttcgt cggcgatcgg
     2221 ctgataaacg aagtcgacga acttctcctg cgtctcgtcc gcactgccga gccgcaccgg
     2281 gattgctcgt ccgatgaacg gctctcccga ttgcgcgaca ttatcgagga ggctgatgaa
     2341 gccctgctcc gcgacttccg gcaaggcttc atgcacgctc ttacctataa cggagcgccc
     2401 gacgagcctt tcgtaggccg catttgccat gacaaagcga tggtcttttc cttcgagcag
     2461 cgcagtaaaa ccgggcgcag catcgaacat ccgcctcagc cgctcgcgtt cgccgctgat
     2521 cctctgctcc gcgcggacct tggccgtggt ttcgacgacg atcgcgataa cggccgcaat
     2581 gttgccgtca tcgtcaacaa cgggggaata gtcgaggttg agccaagctg gttcagcttt
     2641 cccatgacgt tccagaacga gtttctcatc ctggacggaa atcgtctctc cccggtggaa
     2701 caccgtctcc atcacattgc ggttccagtc cgcgacctct ggccatgcat cgagaacgtc
     2761 gagccctaat atttgggggt gccgcgctcc cgcgaactgc gcgtaggcat cattgtagat
     2821 catgacgccg gcatcgcccc acagagtaac gactgggacc ggcgactgca ggatgagcgc
     2881 gacggtcgtt ttgacgacag caggccagtc gttgattgga ccaagggagg tcgaccccca
     2941 gtcgaattcg gcaatcaggt cgcgaacctc gccgccgccc gacagaaagc tgggccggcc
     3001 gagtgcctga ctacggggca tatccatgta ccctcgcctc tagtcgaaaa tgctgttcgc
     3061 acaagtggtt ggcgatcccg tggcttcgcg agagcgccat gcaagctggt aagcgatcgg
     3121 tggacaagct ggtcaatcgt gcttcagtat ctcttcgcgc gcggcggcat attcctgcgg
     3181 agtgacgcgc ccgtcgtggt tggcatcagc gagcgttcgg aatgcctcgg ccgcaacgcg
     3241 caactcgtca ggttcaagca gtaagtcgcc attgcgatcg aagtgcttca gcgcccagtt
     3301 catgaggacc cagtcgcgct cgagaagctc gaccgcagca ggctgtactt tcaacgtcgc
     3361 cgccgtcggc tccgcggcga gccgcgacat gcaagaaagt aacgagagcg cgaggaatgt
     3421 tcgtagcacg gcacctgaac gcgcgtcgtg ctggtcggtt caggtactcg ccgcaattgc
     3481 tccgcggacc gctttttgaa gagcatcggc acgaaacggc ttggcaagca agggcgcatc
     3541 tggggcggtc cgtttgactg cttctgtttc gctgtagccg gagacgaaca agatcggctg
     3601 ctcgggacga ttgatccgga tgcgccgtgc aacttcagcg ccggaaagac cgggcatgat
     3661 gaagtcgagg atcacgagat caggagtctc gcggtcgagc gcagcgagac cctgcgtgcc
     3721 gtcacttgcc tcgcggaccc tgtagccctg ttcctcaagg ctgttggcga taaagccccg
     3781 cacatctgga tcatcatcga tgacgaggac agaaatcggc gccaagggaa ccgtggctgc
     3841 gaccgggtca tcggccgcga cactgacttc gctaatcgtt gagtcagccg tgcggaagag
     3901 cagctttacc gacgtgccct tgcctggtga gctctcgatc cgagctgccc cgccggactg
     3961 gcgcgccatg ccatacacca tcgacagacc aagtccggtc cctttcccca cctctttcgt
     4021 cgtgaagaat ggttcgaatg cgcggtctgc gacttcttgc ggcattccga ctcccgtgtc
     4081 gctgatgcaa agctcgatgt agtcgccatc atcaagttcg ccgtcgcctt caatcctgac
     4141 cggagtcgtt gaaaaggtga gcacgccgcc gtcaggcatt gcgtcgcggg catttattgc
     4201 aaggttgagg atcgccactt ccagttgcgt cggatcagcc atcaccggga tcatggcctc
     4261 gtcaaggtcg aacttcttgt tgatgccggg accaagtaca ttgcgaagca gcggtctcat
     4321 gttctcgatg agtggggcga cataagtagg cctgacctcg agccgttgta cgcggctgaa
     4381 cgcaagaagc tggccagtga ggcgcgcgcc ccgctcggcc gctgcaagag cattctcggc
     4441 gtaacgcttg agctttggct cttcagcgcg cttggtgatt atgtccagtc cgccgaccac
     4501 gaccgtaagc aggttgttga aatcgtgcgc gatgccaccg gtcagctggc ccagagcttc
     4561 cattttctgg ctctgccgca gctgctcctg cgcactcttg agatccgtga cgtcgcgcgc
     4621 ttcaaacagg agatagatga tcttcccgtc cgctgctcgc accggctgga cggagacgtc
     4681 gagataggct gttgcaacac cgtcacgctc catcttgacg tcagtcgtga atacctcgcc
     4741 actggctgcc gcagcgaccg cctttcgcat taatgcgacg tgctgcggat aggcgcgcat
     4801 tgtcggtgcg tcccagatct tttggccgat ggccctggag ggttcttcca ttcgccaggt
     4861 ctcacgacgg ttattgactg caagcacagt tccgtccggc tcgagcagca ccatgacttc
     4921 gagagccgct tcgaagacgg ctctgaactg tgcctcactc gccgcgagct gggccgttcg
     4981 ttcttctacc tgccgccgaa gctcgagttc agcttccttg gcgacggtaa tgtcggttcc
     5041 aacgccaatg aaacccacca attctccgtc aggaccaaag cgcggctgtg atacggttcg
     5101 taaccagcga tattcgccgt catagcgcct gtagcgcccc tcgagcgtga agtcggctcc
     5161 cgaagcctcg ccggcgacgc tttcggcaat gatccgttcg acatcgtcgg gatggatccg
     5221 ttcacgccaa tcgaggagac gcgcttcatc cttcgcactc ccgggcccgc acgcgaactc
     5281 ggcgtaggcg tcgtttacga agtcccttac gtggtcgatt ctggtcaccc acatcagcgc
     5341 tggggccgaa ttggcgatcc tcctgaaccg ctcctcgctt tcgcgtatcg atcgctcggc
     5401 cagccgttgt tcggtgacat cattgaggac gatgcagatg ccctccgctt cgattgcatc
     5461 accggtgatc cacggcacgt aatcgattgt aagagcgaga cgaccgcgct cgggatgttc
     5521 atatgttgcg gcaaagaact tgcgctcgcc ggcaagtgca gcatcaatga gcggcttgcg
     5581 ctcggcataa ttcttgtcac ccaagatctc gcgcattgat cggccgagga cgtctttgcg
     5641 cggaacacca agccactctg catagggctt gttgacgaag cggaatttct catcgcgatc
     5701 aacaaaggcc gtcatcacgg gaaggaggtc ggcgagcgcg agcagccctg gaccagtgaa
     5761 catcgaatgg ggaaggtccg gcggaagcgc ggccgcattc ggaggctgct gctctcccaa
     5821 accatctccc ttgtgcccta cgtcggccat tgtcggtgat gattccgaca aatggacaaa
     5881 gagtcgagac agataattgg gtcagctcac gatcgcgctc aatccgccat ccgggccgtc
     5941 ggtgacgcac tggaggggcc cacattcgaa gggatcagcc gccgcgaacg aacggccagg
     6001 agcgccgatt taggcttcgt cacccatgcg caatgccgcg ataaatgctt cctgcggaat
     6061 tgaaacattc ccatattcgc gcatgcgctt cttcccctcc ttttgctttt caaggagctt
     6121 tcgctttcgc gtcgcatcgc cgccgtagca tttggccgta acgtccttgc gaagcgccgc
     6181 gatggtttcg cgtgcgatga tcttgccgcc gatcgctgct tgaataggta tcttgaacag
     6241 gtgtctcggt atgaggtcct tgaggcgctc gcacatgccg cgacctcgtg cctccgcgtt
     6301 tgcccggtgc acgatcatcg aaagtgcatc gaccgcctcg ttgttcacca ggatgctcat
     6361 cttgacgagg tcgccttcgc gatggccgac ctggtgataa tcgaagctcg cgtagccacg
     6421 gctgatcgac ttcaggcgat cgtagaaatc gaacaccacc tcattcaatg gcagctcgta
     6481 gcggagcatc gctcgcgcat ggctccctgt tccgacatag ctgagatctt tttggatccc
     6541 gcggcgatcc tggcaaagct tcaatactgc gccgagatag ctgtccggaa cgtagatagt
     6601 cgcgtcgatc cacggttcct cgacgacttc aatgaggctc gggtccggcc agtcggcggg
     6661 attgtggatg tggagcgtct cgccgctcct gaggcgcacc tgataaacca cggaaggcgc
     6721 ggtggtgatg agatcgagat cgtactcgcg ggcgagccgt tcctggatga tctcgaggtg
     6781 aaggaggccc aggaagccgc agcggaatcc gaaaccaagt gcggcgctgg tttccatttc
     6841 aaagctgaac gaggcatcgt tcaatcgcaa cttgtagagg ctgtcacgaa gcttctcaaa
     6901 gtcatttgcg tcgacgggga acaggccgca gaacacgacc ggctgcactt ccttgaaacc
     6961 gggcaggggt tcttgagcag ggcgcttcgc atcggtaatc gtgtcgccga cgcgagtttc
     7021 ggcaacctcc ttgatctgcg cggttatgaa ccccacttcg ccggcgccaa gctcaggcag
     7081 gtgctcgatt ttcggtcgga agacgcccac gcgatcgacg aggtgcgtcg tacccgcctg
     7141 catgaacttc accgccattc ctttgcgcag cgtcccgtcg atgacgcgca cgagaataac
     7201 gacgccgaga taaggatcgt accaactgtc gacgagcatg gccttcaacg gcttcgcgct
     7261 gtcgcctttc ggcggcggca ccttgtcgac aatcgcctgc aacacttcgg ttattccgac
     7321 gccggtcttg gcacttgcaa gtacggcgtc ggacgcatcg aggccgatga tttcttcgat
     7381 ctcctgccga actccttcgg ggtccgctgc cggtaggtcg atcttgttga taacgggcac
     7441 gatctcgtga tcgtgctcga tgctctggta aacattcgca agagtctgtg cttcgacgcc
     7501 ttgcgctgca tcgacaacca ataatgctcc ctcgcatgcc gcgaggctgc gcgaaacctc
     7561 gtatgcgaaa tcgacgtgcc cgggcgtgtc catgaggttg agctcatagc ccctccagtc
     7621 gagccgtacc gtctgcgcct tgatcgtgat tccccgttcg cgctcgatgt ccatgttgtc
     7681 gaggacctgc gcttgcattt cacggtcaga caggccgccg caggcctgga ttagtcgatc
     7741 cgcgagcgtc gacttgccgt gatcgatatg cgcaatgatc gagaaattcc gaatgcggga
     7801 gatgtcggcc gacaattttg aaacactttg ctgaggttgg tctggcgggg gcgctagcag
     7861 ggcgagccga agctgtcagc aagcgttgcg atttagcggc ggcagcggaa tgtcgacctt
     7921 ccgactcagg caaatccctg ttaagtggca agagcttaac tagaggggcg tatccatggc
     7981 aaaatttgcg catctcgcgg gcgttgcgct cgtgatggtt tcgtcgtctg cgcttgcaga
     8041 cccgagttcg gctcgcaagg accaggttcg cggcgaacag gaaattcccg tctgttcaca
//
LOCUS       DASRBJ010000331        10313 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_192843,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000331 DASRBJ010000000
VERSION     DASRBJ010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 10313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10313
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192843"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1153
                     /locus_tag="VE968_09130"
     CDS             <1..1153
                     /locus_tag="VE968_09130"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HZU52021.1"
                     /translation="NSKQFAAMGLLLLRDEGKLSLDDHVSKYLPGISEGDRITIRQLL
                     SHTSGLEDYWPQDYMFADMTVPTSPQHIVDKWAKKPLDFQPGDQWQYSNTGYVVAGLI
                     IEKVSGEPLMTFLREKIFRPLGMTSVLDQDMTNTPAFPAPYTRYALGPVRLQRPAARG
                     WLYAAGELSMTARDLATWDIARINRAVLPPKDWEEQETEVKLNNGKGTNYGLGVALRS
                     APRREVTHTGEAVGFLSVNTVYPDQRSAVVVLTNSWNTGSAFTRIAADIADVILPSAT
                     QDPVSAAQARRARTLFDELRAGRVDRSLLTKNASFYFTPEAIADFHSSVARLGAPLAF
                     EPSGNPVLRGGFVIQGYTVTYPATKLSVSTFYEPGANGRIEQFLVSPAS"
     gene            complement(1226..2599)
                     /locus_tag="VE968_09135"
     CDS             complement(1226..2599)
                     /locus_tag="VE968_09135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010185958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HZU52022.1"
                     /translation="MTAACATAPEYRRPAVPVPAEYKEASGWQAAGTNVAPPGHWWEI
                     FGDPVLNGLEARIEQGNPSLFAAIARYEQARGLLGQARADQFPEVDAGADAERTRLSA
                     GRPLSGGNAATYNLVTVGPSLTYELDLFGRVRNSVRAATAETEASAADVAALRLGLEA
                     QLATAYFQMRGLDARTVLLQQTVAAYSHVYALIATRHQGGIASGVDLSRAENQLASAR
                     AELSAVAIDRQRDEHAIAVLVGDPPAALSLPLVNQSITAPAVPAGLPSTLLERRPDIA
                     AAERRVAEANSRIGVARAALFPSITLGLSGGFESTAGTLLSAANSFWTLGPLSAAMAI
                     FDGGRRRAGVRIARAQYEEAAANYRQTVLTAFREVEDDLASQRLLGTQERDQQEAAAA
                     ADHTRDLALIRYRDGAADYLEVATAQTAALDAERALLEVRTLQLTTAVDTVRATGGLY
                     SSRGAAA"
     gene            complement(2628..3782)
                     /locus_tag="VE968_09140"
     CDS             complement(2628..3782)
                     /locus_tag="VE968_09140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010185959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HZU52023.1"
                     /translation="MPEGSNNRSLKLWGIGAAVCALGVVATGVAARRHNEHELAKWTA
                     AQSTPVVTVIHPKPATASGNLVLPATLQALNSAPIYARTSGYVRKWFADIGQPVRAGQ
                     VLAVLDAPEVDQQLAAAKADLQTARANQQLAATTAVRWKNMLAQDAVSKQETDEKVGD
                     LAAKAAVTRAAAANVNRLRFTQGFTRLVAPFSGIVTTRATEIGQLVTAGNANAAPLFT
                     VADVSTMRVFVRVPQSYSAQVHPGMHVALTLPEYPARTFDATLVRSAGAVDPSSGTVL
                     VELQAPNADRSLKPGAYAQASFPLSGAGGTVTLPASALITGDKGTQVAVIGPNGRALL
                     KNVKLGRDLGSTVEVSAGLSMNDRVIDSPPDSLQNGDPVQVHSDSGNAAR"
     gene            complement(3775..6981)
                     /locus_tag="VE968_09145"
     CDS             complement(3775..6981)
                     /locus_tag="VE968_09145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HZU52024.1"
                     /translation="MIGIVRIALARPLTFIVMAILIGIVGILAAIRTPVDIFPNIGVP
                     VIATAWQYQGLSPDQMSGRMITPFERILTTTVNDIDHIESTSLPGMGVVKIYFQPGAD
                     IRTATAQVTSVSQTVLKQLPQGVNPPLILNYNASTVPILQLALSGKGISEGQMFDTAI
                     NQIRPGLVTVPGAAIPYPSGGKQRQIQIDLDPQALQSKGLSAQDVGNAIAAQNQITPV
                     GFVKIGDFQYNVALNNAPTSVEALNDLPIKAVNGAEIYMRDVAHVRDGSAPQTNVVHV
                     DGSRSVVMTILKNGATSTLAIVQGVKDALPKIQQTLPSNLKVVPIGDQSLFVKAAVQG
                     VVKEGAIAAALTSLMILLFLGSWRSTVIIAISIPLAVLTAIIALAVTGNTLNIMTLGG
                     LSLAVGILVDDATVTIENINWHLEHGKPVKEAILDGAAQIVTPAFVSLLCICIVFVPM
                     FFLPGVAGFLFVPLALAVVFAMIASFILSRTLVPTMAMYLLKPHSNGDDHELHSAGTA
                     KSRNPLVRFQRGFESRFEAVRSRYGHLLEQALRAPKPFIVGFLGVVLLSFLLVPLLGQ
                     NFFPSVDAGQIAMHVRAPIGSRIESTSAEFDRIERSIRAIIPPSELVSVVDNIGLPVS
                     SINTTYNNSGTIGPQDGDILIQLSERHRPTNDYIRKLRETLPREFTGSTFSFLPADIT
                     SQILNFGAPAPIDIQVAGGSDPSKSEAYAKLILRKIALIPGVADARIQQSSHYPQLDV
                     NVDRSRAVQVGLTERDVTTSLGASLAGTQQTAPTFFLNPESGVSYAVVAQTPERQIAS
                     ISDLANVPITGSNAQGSQVLGGVATIERGTSPAVVSHYNIAPTVDVYATPNGRDLGAV
                     AGDIKGVLKSLKAQAPKGVTVTLRGQYATMQTAFSGLAMGLIGAILLIYLLIVVNFQS
                     WLDPFVIITALPGALAGIIWMLFTTGTTLSVPALTGAIMCMGVATANSILVVSFARER
                     LAEHGEAVRAALEAGITRFRPVLMTALAMIIGMLPMAMGLGEGGEQNAPLGRAVIGGL
                     LVATFATLMFVPVIFSLVHRRRTAAAPSATIRLEEVHA"
     gene            7141..8028
                     /locus_tag="VE968_09150"
     CDS             7141..8028
                     /locus_tag="VE968_09150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010185962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HZU52025.1"
                     /translation="MELRHLRYFVQVAEDLHFARAAQHLGISQPPLSQQIRALEEELG
                     VRLFERTSRHVALTPAGELFLVEARATLAQADHAITIARRAAGGELGDLAIGFNASAP
                     FIPRIARAIHDFRQAYPDIKLSLSEKGGPAQIEAVADRALDIGFLRRSHRPQLPAGVV
                     AVSLVTERLFVAMRRDHRFAKLDGIQLTDLENEPMLVYAQTRSGGFTQEFMAMLRDAQ
                     VTPKVAQTVGEISTMFGLAAAGLGVTVLAESLCALQSANLIYRPILDPLAVTGMWMIH
                     QEEPTLPCRNFLRIAGARG"
     gene            complement(8045..8713)
                     /locus_tag="VE968_09155"
     CDS             complement(8045..8713)
                     /locus_tag="VE968_09155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IB family hydrolase"
                     /protein_id="HZU52026.1"
                     /translation="MSALAVYDMDRTVTRRATYTPFLLHCAVHRAPWRLMLLPFVMAS
                     MVAYVARLIDRARLKEINHRLLIGGKVHPRELEPLVESFADRQVATNIRPGAIAAIAR
                     DRAEGRRLVLATASYRLYATAIARRLGFDDVIGTGSVIGLDERVHAKIAGENCYGPAK
                     MRMIVDWLERSDLSDHGHVRFYSDHVSDRPAFEWADEPVAVNPHRKLRVLAEVNGWAI
                     EDWG"
     gene            complement(8710..9474)
                     /locus_tag="VE968_09160"
     CDS             complement(8710..9474)
                     /locus_tag="VE968_09160"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HZU52027.1"
                     /translation="MTCTAIVLAGSRPGPDAFAASFGTDLKALIPVAARPMVAWPVAA
                     LLQSSSIGQVVVLAQQPHRIAPVLPDDDRIVTRRSKDTIAETILALVDEPDLKWPLLV
                     TTADHVLLTSSTIDDFCKQASASQVAIGVVVRRALLNRLPATRRTWLKFRGDAYTGAN
                     LFFLASPAVRPAIEVWRSVEQDRKKAWRVVSLTGPFVLLMAALRLITLDQLLSRLSDR
                     LALKIRAIRLTDPLAGVDVDKPADHELVEAIIAGKA"
     gene            complement(9471..>10313)
                     /locus_tag="VE968_09165"
     CDS             complement(9471..>10313)
                     /locus_tag="VE968_09165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HZU52028.1"
                     /translation="ASFAIASGTAIKDYENLPAETAELNYAELRKRARPFVLPLNPLD
                     PEPVERAAYDAAYKGVSDALTLFLWRRPAFYLTRWAARARLAPNFVTLVGAILCIAAF
                     FLFWRGDYWLGTLSGFVFMVLDTVDGKLARCTGASSKWGNIFDHGIDVVHPPFWWWAW
                     LHGLRAYGRPLEPFSATMVLWVIIGGYLAQRLIEGVSIKRFAGMEIHVWRPLDSKFRL
                     ITARRNPNMVLLVVGLLFGRPDVGLEAVAWWTLVSLIFHAVRLAQLTELQARGEKVTS
                     WLAG"
BASE COUNT         2027 a         3122 c         3245 g         1919 t
ORIGIN      
        1 caactcgaag cagttcgcgg cgatggggct cctgctgctc agagacgaag gcaagcttag
       61 cctcgacgac catgtctcga agtaccttcc tggaatatcg gaaggtgacc gtatcaccat
      121 ccggcagctg ctcagccaca cgtcggggct cgaggattat tggccgcaag actacatgtt
      181 cgccgacatg acggtgccga cgagcccgca gcacatcgtg gacaagtggg ccaagaaacc
      241 actggacttc cagccagggg atcagtggca atattcgaac accggctatg tggttgctgg
      301 ccttatcatc gagaaagtca gtggcgagcc gctgatgacc ttccttcgag agaagatctt
      361 tcggcccctc ggaatgacca gcgtccttga ccaggacatg acgaacaccc cggcatttcc
      421 agcgccctat acgcgctacg cgcttgggcc ggttcgatta cagcggccgg ctgctcgagg
      481 atggctctat gccgcaggcg agctgtcgat gacggcgcgg gacctcgcga cgtgggacat
      541 cgcgcgcatc aatagagccg ttctcccgcc aaaagactgg gaggagcagg agaccgaggt
      601 caagctcaac aatggcaagg gcaccaacta tgggcttggc gttgcgctgc gttcggctcc
      661 gcgccgggag gtcacccata ccggcgaggc ggtcgggttc ctttcggtaa acaccgtcta
      721 ccccgatcag cgttccgcag tcgtcgtact caccaacagc tggaataccg gcagcgcgtt
      781 cacgcgcatc gcggcggaca ttgccgatgt cattctgccc tcggcaacac aggatccggt
      841 tagcgccgcc caggctcgac gtgcacgcac cttgttcgac gaactgcggg caggaagggt
      901 cgaccggtcg ctgctcacca agaacgccag tttctacttc acgccggaag ccattgccga
      961 cttccactcg agcgttgctc gattgggcgc gcccttggca tttgagccgt cgggcaaccc
     1021 agtgctgcgg ggcggtttcg tcatccaggg gtacaccgtt acgtatccgg cgacgaagct
     1081 ctcggtctcc accttctacg aaccgggcgc caatggccgc atcgagcagt tcctcgtttc
     1141 acccgcgtcg tgaccagtat tttagcgatg atcgccgcgg ccggcgttcg cgcgagcaag
     1201 gcaaacattc acgcgggagc cggatctagg ccgcggctcc acggctcgaa tatagtccgc
     1261 cggtcgcccg aaccgtgtcg acggcggtcg tgagctggag ggtcctcact tcgagaagcg
     1321 cgcgctcggc gtcgagcgcg gcagtctgag ccgtcgcgac ttcgagatag tccgctgcgc
     1381 cgtcgcgata acgaatgagg gcgaggtcgc gggtgtggtc agccgcggca gcggcttcct
     1441 gctggtcacg ctcttgcgtt ccgagcagcc gctggcttgc aagatcgtcc tcgacttcgc
     1501 ggaaggcggt gagaaccgtt tgccggtagt tggctgcggc ttcctcatac tgagcacgcg
     1561 cgatccttac tccagcgcgc cttcggccac cgtcgaagat tgccattgcc gccgaaagtg
     1621 gcccgagcgt ccagaagctg ttcgcggcgc ttagaagtgt gccggcggtc gactcaaacc
     1681 ctcccgaaag tccaagggtt atcgacggga agagcgcggc gcgagcgacg cctatccgcg
     1741 aattcgcttc ggcgacccgc cgttcggcag cggcgatatc gggacggcgc tcaagcaatg
     1801 tcgacgggag tcctgccggg acagcgggcg ccgtgatcga ctggttcact agtggtagcg
     1861 aaagcgccgc cggcgggtca ccgaccagca cggcaatggc atgctcgtcc cgctggcgat
     1921 cgatcgcgac ggccgagagt tccgcgcgcg cgcttgcgag ttggttctcg gcgcgactga
     1981 ggtcgacgcc cgaagcaatg ccgccctggt gcctcgtcgc aatcagcgca tagacatggc
     2041 tgtaggccgc taccgtctgc tgaagaagga cggtccttgc gtcgaggccg cgcatctgga
     2101 agtaggcggt cgcaagctgc gcctcgaggc caagacgaag tgcggcaaca tccgcggcgc
     2161 ttgcctccgt ttcggccgtc gccgcgcgca cggaatttcg tacgcgccca aacagatcga
     2221 gttcgtaggt aagcgacggt ccgacggtca cgagattgta ggtggcggca ttgcctcccg
     2281 acagcgggcg accggcggac aatcgggtac gctcggcatc cgctcccgca tcgacctctg
     2341 gaaattggtc agcgcgcgct tgccccagca aaccgcgcgc ctgctcatac cgagcaatcg
     2401 ccgcgaaaag gctcggattg ccctgttcaa tccgcgcctc gagcccgttc agcaccgggt
     2461 cgccgaaaat ttcccaccaa tgcccgggcg gcgcgacatt ggtgccggcg gcctgccagc
     2521 cactagcttc tttatattct gcaggtaccg gtaccgctgg tcgcctgtac tctggagccg
     2581 tagcgcatgc agccgtcatc agcagcgcgc cacaaaagag cgctgactta acgcgcggca
     2641 ttgccactat ccgagtgaac ctggactggg tcgccgttct ggagcgaatc cggtgggctg
     2701 tcgatcacgc ggtcgttcat cgagagcccg gcactcacct cgaccgtgct gccaaggtcg
     2761 cggccaagct tgacgttctt gaggagcgct cggccattgg gaccaatcac ggcaacctgg
     2821 gttcccttgt cgccggtgat gagtgcgctc gccgggagcg tcacggtgcc gccggcaccg
     2881 cttagtggaa agctcgcttg cgcataagcg ccgggcttca gcgaccggtc ggcattgggc
     2941 gcctgcaatt cgacgagaac ggtgcccgag cttggatcga ccgcgcccgc gctccgaacc
     3001 aacgtcgcat cgaacgtccg cgctggatat tcgggaagcg tgagcgcgac gtgcatccct
     3061 gggtgcacct gtgcggaata actctgcgga acgcgaacga acacgcgcat cgtgctgacg
     3121 tccgccaccg tgaacaacgg agcagcgttc gcattcccgg cggtcaccaa ttggccgatt
     3181 tcggtcgcgc gcgtcgtgac gatgccgctg aagggcgcga caagtcgcgt gaagccttgc
     3241 gtgaatcgca agcggttcac gttggcggcg gcagcacgcg tgaccgctgc ctttgcggca
     3301 agatcgccaa ctttttcgtc ggtctcctgt ttcgaaacgg cgtcctgcgc gagcatgttt
     3361 ttccagcgaa cggccgttgt cgcggcaagc tgctggttcg cgcgagctgt ctggaggtca
     3421 gccttggccg cggccaattg ctgatcgact tccggcgcat caagcacggc gagcacctgg
     3481 ccggcgcgta cgggttggcc aatatcggcg aaccattttc gaacgtagcc gctggtgcgc
     3541 gcgtagattg gcgcgctgtt caacgcctgt agcgttgccg ggaggacgag gttgccactt
     3601 gccgttgcgg gcttcgggtg aatgaccgtc acgacgggcg tcgattgcgc cgccgtccat
     3661 ttcgcaagtt cgtgctcgtt atgccggcgc gcagcaacgc cggtagcaac gacgcctagg
     3721 gcgcagaccg cggcgccgat gccccacagc ttgagtgaac ggttattgct gccctcaggc
     3781 atgcacttcc tccaaacgaa tggtcgcgct cggcgctgcg gcggtgcggc ggcgatggac
     3841 caagctgaaa atgacgggaa cgaacatcag cgtcgcgaaa gttgcaacga gaagaccgcc
     3901 gatcaccgcg cggccgagcg gcgcattctg ctcgccgcct tcgccgaggc ccattgccat
     3961 cggcagcatc ccgatgatca ttgcaagcgc ggtcatcaat accgggcgga agcgcgtgat
     4021 acccgcttcg agagcggcac gcacggcttc accatgttcc gcaaggcgct cgcgcgcaaa
     4081 gctgacgacg aggatcgagt tggcggtcgc aacacccatg cacatgattg cgccggtaag
     4141 cgcgggtacc gacagcgtcg tccccgtcgt gaagagcatc cagatgatcc cggcaagcgc
     4201 ccctggcaaa gcggtaatga tgacgaaggg atcgagccag ctttgaaaat tgacgacgat
     4261 caggaggtag atgaggagga tggctccgat aaggcccatc gccaagcccg agaaggcggt
     4321 ttgcatcgtc gcatattgcc cgcgaagagt aaccgtcacg cccttcggcg cctgggcctt
     4381 aagggatttc aatacgccct tgatgtcacc ggccaccgca ccaaggtcgc ggccgtttgg
     4441 agttgcgtaa acatcgacgg tgggcgcaat attgtagtgc gaaacgaccg ccggcgacgt
     4501 tccccgctcg attgtcgcga caccgccgag aacctgcgaa ccctgcgcat tgctgccggt
     4561 aatcggcacg ttcgcaagat cgctgatcga ggcgatttgc cgctcggggg tctgcgcgac
     4621 caccgcatag gagacgccgc tctcagggtt gaggaagaag gtcggtgccg tctgctgagt
     4681 gcctgctagg cttgcgccga ggctggtggt cacgtcgcgt tcggtaaggc cgacctggac
     4741 ggctcggctt cgatcaacgt tcacgtcgag ttgcggataa tgcgaactct gctggatccg
     4801 cgcgtcggca acgcctggga tgagggcgat cttgcgcaaa atgagcttgg cgtacgcctc
     4861 gctcttggat gggtccgagc caccagcgac ctggatatcg atcggcgctg gagcgccaaa
     4921 gttcaggatc tggctggtta tgtcggcggg caggaacgag aaggtcgaac cggtgaattc
     4981 acggggcaaa gtttcgcgca gcttgcgaat ataatcattc gttggtcggt gacgttcgct
     5041 gagctgaatg aggatgtcgc catcctgcgg gccgatcgtt cctgaattat tgtaggtcgt
     5101 gttgatcgag ctcacgggaa ggccgatgtt gtcaacgacg gacacgagtt cggacggcgg
     5161 tatgatcgct cggattgatc gttcaatgcg atcgaactcg gcggacgtgc tctcgatgcg
     5221 acttccaatt ggtgctcgca cgtgcattgc gatctgcccg gcgtcgaccg acgggaaaaa
     5281 gttctgccca agcaagggga cgagcagaaa cgagagaaga actaccccaa ggaagccgac
     5341 aatgaatggc ttgggcgcgc gcagcgcctg ctcgagcaaa tgaccgtagc ggctgcgtac
     5401 cgcttcgaag cgtgattcaa atccgcgctg gaaccggacg agcggattgc gcgactttgc
     5461 tgttccggcg ctgtgcagct cgtggtcatc gccattcgag tggggcttca ggaggtacat
     5521 cgccatcgtc ggcacgagcg tgcgcgagag tatgaacgag gcaatcattg caaacacgac
     5581 cgcaagggcg agcggcacga acaggaagcc ggcaactcct gggaggaaga acatcggcac
     5641 gaagacgatg cagatgcaca gcaaggatac gaacgccgga gtgacaatct gcgccgcacc
     5701 gtcgagaatg gcttccttga cgggcttgcc gtgctcaaga tgccagttga tgttctcgat
     5761 cgtaaccgtt gcgtcgtcga cgagaatgcc aacggcgagg cttaggccgc ccagcgtcat
     5821 gatattgagc gtgtttccgg tcaccgcaag cgcgatgatc gccgtaagca ccgcgagcgg
     5881 aatcgagatg gcgatgatca ccgttgagcg ccatgagccg agaaagagca ggatcatgag
     5941 gctcgtcagg gcggcagcga tcgcgccttc cttgacgact ccctggacgg cagccttcac
     6001 gaacagtgac tggtcgccga tcggtacgac cttcaggttc gaggggagcg tttgctggat
     6061 ctttggaagc gcgtctttca cgccctgaac aatggcaagc gtcgaggttg cgccattctt
     6121 gaggatggtc atgaccaccg agcgcgagcc atcgacatgg acgacgttgg tttgcggcgc
     6181 ggaaccgtct cgtacgtgcg cgacgtcgcg catgtagatc tcggcaccgt tcaccgcctt
     6241 gattggcagg tcgttcagcg cctcgaccga agtgggcgca ttgttgagcg caacattata
     6301 ttggaagtcg ccgatcttga cgaagccgac cggggtgatc tggttttgcg cggcgattgc
     6361 gttgccgaca tcctgggccg acaggccttt ggactgtagg gcctgcgggt caagatcgat
     6421 ctgaatctgc cgttgcttgc cgcccgaggg ataaggaatt gctgcgccag ggacggtgac
     6481 caggcccggc cggatctggt tgatcgccgt gtcaaacatc tggccttcgg agatgccctt
     6541 gcccgagagc gccaactgaa gaatcggcac ggtcgacgca ttatagttga ggatgagggg
     6601 tggatttacg ccctgcggca gctgcttcag caccgtctgg ctgacgctcg ttacctgtgc
     6661 cgtcgccgtg cggatatcgg cgcccggctg gaaatagatc tttacgactc ccatgccggg
     6721 aagggacgtg ctttcgatgt ggtcgatgtc gttgacggtc gtcgtcagta tgcgctcgaa
     6781 cggcgtaatc attcgtcccg acatttgatc gggcgatagg ccctgatact gccaggcggt
     6841 ggcaatcacg ggaacgccga tgttcgggaa gatgtcgacg ggcgtccgta tggcggcaag
     6901 gatcccgacg atcccgatga ggatcgccat cacgatgaac gtgagcggcc gcgcgagcgc
     6961 gatacgtaca attccgatca agatcgatcg ctccaggttg ccccgccgca acgcgaactg
     7021 gtggccgtgg tcgaatggat tcagcacccc gcgaagcggc gctgcaccgc agcatttcta
     7081 gcgcataggc ggggcttgtc taatattgtt tatggtatga tcgatagtta atacatatca
     7141 atggagctca gacacttacg ttatttcgtg caggtggcgg aagatctgca ttttgcgcgt
     7201 gcggcgcagc acctcggtat ttcgcagccg ccacttagcc agcagatccg cgcgcttgag
     7261 gaggagcttg gcgttcgact gttcgagcgg accagccgcc atgttgcctt gaccccggcg
     7321 ggcgagctgt tcctggtcga agcccgtgcg acactcgccc aggcggatca tgcgattacc
     7381 attgcaaggc gcgctgctgg aggagaactc ggcgacctgg ccatcggctt caacgcctcg
     7441 gctccattca tccctcgcat tgcaagagcc attcatgatt tccgccaggc ctatcccgac
     7501 atcaagctca gtctctctga aaaaggcgga cccgcgcaga tcgaagcagt tgccgatcgg
     7561 gcactcgaca ttggcttcct tcgccgctcg caccgcccgc aactgccggc tggtgtcgtg
     7621 gctgtgtcac tcgtcaccga gcggctgttc gtcgccatgc gtcgggatca tcgtttcgca
     7681 aaactcgacg gaattcagct gacggatctc gagaacgaac cgatgctcgt ctacgcacag
     7741 acgaggagcg gcggcttcac gcaggaattc atggcgatgc tgcgcgatgc gcaagtcacg
     7801 cccaaggtcg cgcagaccgt cggcgagatt tcaaccatgt ttgggctcgc cgcggccggc
     7861 ctcggcgtga cggtccttgc ggaatcgctc tgcgctcttc aatcggcaaa cctcatctat
     7921 cgtcccatcc tcgatccgct tgccgtcacc ggaatgtgga tgatccacca ggaagagccg
     7981 acgcttccct gccgcaattt tcttcgtatc gctggcgcta ggggctgaac gccaagccgc
     8041 tcgcctagcc ccagtcctcg atcgcccacc cattaacctc tgcaagcaca cggagtttac
     8101 ggtgtggatt gaccgccacc ggttcgtccg cccactcaaa cgccgggcga tcggacacat
     8161 ggtctgaata gaaacgaaca tgtccatgat cgctgaggtc cgatcgttcc agccaatcga
     8221 cgatcatccg catcttggct ggcccatagc aattctcgcc ggcgatcttc gcatgcacgc
     8281 gttcatcaag gccaatgacc gaccctgtgc caatcacgtc gtcaaagccg aggcggcggg
     8341 caatggccgt cgcataaagc ctgtaggatg ccgtagccaa caccagcctt cggccttcag
     8401 cgcggtcgcg tgcgattgcg gcaatggcac ctggccgaat gttggtggcg acttgccggt
     8461 ccgcgaagct ttcgacgaga ggctccagtt cgcgcgggtg aaccttgcct ccaatcagca
     8521 atcggtggtt gatttccttg aggcgagcgc ggtcgatgag gcgcgccaca taagccacca
     8581 tcgaggccat gacgaacggg agcagcatga gcctccatgg cgcgcggtga accgcgcagt
     8641 gcagcaggaa gggggtgtag gttgctcgtc gagtgacggt tcggtccatg tcatagaccg
     8701 caagcgcgct catgctttcc ccgcaatgat ggcttcgaca agttcatggt cggcgggctt
     8761 gtcgacgtcg actcccgcga gcggatccgt cagacgaatt gcgcggatct tcagggccaa
     8821 gcgatcactg aggcgcgaca acaactggtc gagagtgatc aagcgtagcg ctgccatcag
     8881 cagcacgaac ggacccgtga gcgagacgac gcgccaggct ttcttgcgat cctgctcgac
     8941 cgagcgccag acctcgattg ccggtcggac ggcaggcgac gccaagaaaa agagattggc
     9001 gcccgtgtag gcgtctccgc gaaacttgag ccaggttcgc ctcgttgctg gaagtcggtt
     9061 caacagcgct cggcgaacga ccactccaat tgcgacttga gaggcactcg cttgcttgca
     9121 aaaatcgtca atggttgagg acgtcaggag aacatggtcg gcggttgtta cgagcaatgg
     9181 ccacttaaga tcgggctcat caaccagtgc tagaatggtt tcggcgatcg tgtccttcga
     9241 acggcgcgtg acgatccgat cgtcatcggg aaggaccggt gcgatacgat gcggctgctg
     9301 cgcaagaaca acgacctggc caatgctgga actttgcagg agcgcggcaa cgggccaggc
     9361 gaccatcggt ctcgccgcaa ccggaatgag cgcctttaga tctgtcccga aacttgccgc
     9421 gaacgcgtcc gggccaggtc gtgagcccgc aagaacgatc gccgtgcagg tcatccggcg
     9481 agccaggacg tcaccttttc cccacgcgcc tgcagctcgg tcagctgcgc cagccggact
     9541 gcgtggaaga tgagactgac cagcgtccac caggccacgg cctcaaggcc aacatcgggc
     9601 cttccgaaca gaaggcccac gacaagcaac accatgttcg ggttccgccg tgccgtgatt
     9661 agccggaact tgctgtcgag tggccgccag acgtgaatct ccatgccggc aaagcgtttg
     9721 atcgacacgc cctcgatgag ccgctgcgcg agatacccgc cgatgatcac ccacagcacc
     9781 atcgttgccg aaaaaggctc gagcggacgg ccataggcac gaaggccatg aagccacgcc
     9841 caccaccaga acggcgggtg cacgacgtca atcccgtggt cgaagatgtt cccccacttg
     9901 gaagaagcac cggtgcagcg tgcaagcttc ccatcgaccg tgtcgaggac catgaaaacg
     9961 aagcccgaaa gcgttccaag ccaataatcg ccgcgccaga aaagaaagaa ggcggcaatg
    10021 cacaggatcg cgccaacgag cgtaacaaag ttgggggcaa ggcgtgcacg cgccgcccac
    10081 cgtgtcagat agaaagcggg cctgcgccat agaaacaagg tcagtgcatc actgacgccc
    10141 ttgtacgccg catcataagc ggcgcgctcg acgggttcag ggtcgagcgg attgagcggg
    10201 aggacgaacg ggcgagcccg cttgcgaagt tccgcgtagt tgagctcggc ggtctccgct
    10261 ggcagatttt cgtaatcttt gatcgcggtt ccgctcgcga tagcgaaact tgc
//
LOCUS       DASRBJ010000332         4269 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_347088,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000332 DASRBJ010000000
VERSION     DASRBJ010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4269
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347088"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..1818)
                     /locus_tag="VE968_09170"
     CDS             complement(100..1818)
                     /locus_tag="VE968_09170"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU52029.1"
                     /translation="MADQHNHDNALLILAPDGRDASVLRAVLSEAGIDAEIDANGAKL
                     FDALRDGTHAGALLTDEGLTRVGLSALRGAVDRQPTWSDFPFVVLARRGQANRGDLRH
                     VEQALNATVLERPLHPTSLVSAARSAIRGRGRQRLAARHLMELEEARRELRNLADSLE
                     TKVRERTRDLASANDRLTAEIAEREKAEARLVQAQKMEAVGQLTGGLAHDFNNLLTAV
                     VGSLDLLLRRTDDERLRKLARNALQAAERGGQLTAQLLAFSRRQRLTPTALDANEIVS
                     GMGDLLARTIGPHIRIETILDPQLWRALADRTQIEVMILNLALNARDAMPNGGRVTIA
                     TSNLSSVPPALSTELAPGAYVAISVTDTGTGMPPEVLSRAFEPFFTTKETGHGTGLGL
                     SQLYGFAKQSGGTARIDSTPGEGTTVTIFLPRTEEQAPTQAVLLERTAKREQVSVLLV
                     DDDDGVRDVCTAMLEDMRCKVTAVASGEEALRALEHESFSLLLTDIAMPAMNGVELAR
                     RAREMAPAMPVLFATGYADLQVFGEQLSDETVVRKPYRLSELAARVEATIDAGRGPNV
                     VDIHRR"
     gene            complement(1811..3325)
                     /locus_tag="VE968_09175"
     CDS             complement(1811..3325)
                     /locus_tag="VE968_09175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007679804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HZU52030.1"
                     /translation="MRDHKGAAELLDEAGPVTSGLPALDYILRGGFAANRIHLIEGEP
                     GAGKTTLGLQFLLEGKSKQERCLYITLSEGRAELINVAQTHGWDMNGIEIFELVPPEL
                     SLDPEREQSILYASDLELGETVKLVMEEVDRVAPARVVFDSLSEIRLLAQGPLRFRRQ
                     VLALKHFFASRHCTVLFLDDLTQREDDLSLHSLAHGVIRLEQIALTYGAERRRLRVYK
                     MRGRAFHGGFHDFLIRTGGLEVFPRLVAGSHPQLAAERRSAKSDIAELDELVGGGLDY
                     GTSTLVVGPSGSGKSTIAMQYAAAALKRGERALFVSFDETQRVFHERAQGLGWNFEEA
                     QEKGDFLFRQVDPAELSPGELAGSVSKAVKEAGVRIVVLDSLTGYQHAMPEEQFLLLQ
                     MHEMLTYLNQQDVLTFVILAQSGMVGQMQSPVDMTYLSDAVLLLRFFESNGEIRRAIS
                     VIKKRTGDHESSIREMRIDDGGVRVGEKLSGFRGVLTGTPVYEGRGALLEDRGG"
     gene            complement(3560..>4269)
                     /locus_tag="VE968_09180"
     CDS             complement(3560..>4269)
                     /locus_tag="VE968_09180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014077677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CsgG/HfaB family protein"
                     /protein_id="HZU52031.1"
                     /translation="QVRGEQEIPVCSHRIGTLAIVPPDKEWWRELNLGSPEAVIKVFV
                     QQSGCFTLVNRDRAMQSRAMERALADQGELQRGSRMGAGQVKAADYFLQPDIVSTNKN
                     SGGGGAGAAIGGLLGHLGGWGGAVGAIAGGINVKKGEANVTLSLVNSRTTEEEALTEG
                     YARKTDVSWGAGGGAGWWGGFAAAGGYGYQNTEIGQVIVLAYLDAYKKLVSQLGGMSA
                     IAAPVPAAEPVPARRRH"
BASE COUNT          828 a         1368 c         1251 g          822 t
ORIGIN      
        1 aaagggcgcg ccgcgagccg gggcatccca ggcgaggcgg cttgatttac ttggaagggc
       61 gcgtcttccg cacgatcaag cgaaccttag catgtctctt catcgacgat ggatatcgac
      121 gacgttcggg ccacgaccgg cgtcaatcgt cgcttcgacg cgcgcagcaa gctctgaaag
      181 gcgatagggc ttgcggacca ccgtttcatc actgagctgc tcaccaaaga cctgtaggtc
      241 agcataaccc gttgcaaaga gtacgggcat ggctggcgcc atctcgcgcg cacgtcgcgc
      301 gagctcgacc ccgttcattg ccggcatggc aatgtcggtc agtaacagcg agaagctctc
      361 atgttcgagc gctcgaaggg cttcttcgcc gcttgcgacg gcagtgacct tgcaccgcat
      421 gtcctcaagc atcgccgtac agacatcgcg cacgccgtcg tcatcatcaa ccagcaggac
      481 tgacacttgt tcgcgcttgg ctgtgcgctc gagcagcacc gcttgggtag gtgcctgttc
      541 ttctgtgcgc ggaagaaaga tcgtgacggt cgtgccctcg cctggcgtac tatcgatgcg
      601 tgccgtgcct cccgattgct ttgcaaatcc atagagctgc gacagaccga ggcccgttcc
      661 atgtccagtc tcttttgtcg tgaagaatgg ctcgaacgct cggctcagca cttcgggcgg
      721 catgccggta ccggtgtcgg ttaccgaaat cgcaacatag gcgcccggcg cgagctctgt
      781 cgaaagcgcg gggggcacgg acgagagatt tgacgttgcg atggtcactc gtccaccgtt
      841 cggcatcgcg tcgcgcgcgt taagcgcgag attgaggatc atgacctcaa tctgggtacg
      901 atcggcaaga gcgcgccaca gctgcggatc aaggatcgtc tcaatccgaa tgtgcggccc
      961 gatcgtacgt gcaaggagat cgcccatgcc cgagacgatc tcgttcgcgt cgagcgccgt
     1021 tggggtcagg cgctgtctcc gggagaaggc aaggagctgc gcggtgagct gaccgccgcg
     1081 ttcagccgcc tgcaaagcgt tgcgggcgag ctttcgcagc cgctcgtcat cggtccttcg
     1141 caagaggagg tcgagcgaac cgacaaccgc cgtcaagagg ttgttaaaat cgtgcgcgag
     1201 accaccggtc agctgtccga cggcttccat cttctgtgcc tgcacgagac gagcttccgc
     1261 cttctcacgc tcggcgattt cggcggtcag gcgatcgttc gcgctcgcga gatcacgcgt
     1321 acgctcgcgt accttcgttt ccagcgagtc tgcgagattt ctgagttcgc gccgagcctc
     1381 ttcgagttcc atgagatgcc gcgcagcgag cctctgccgg cctctgccgc gaatggctga
     1441 gcgagcggca ctgactaacg aggtcggatg caacggccgt tcgagcactg tagcgttcag
     1501 cgcctgctcg acatgccgca agtcaccgcg gttcgcctgt ccccgacgag ccaagacgac
     1561 aaacggaaaa tcagaccagg tcggctgccg gtcgacggcg ccgcgaagcg ccgagagacc
     1621 gacgcgcgtc aatccctcgt cggtgagcaa ggcgccggca tgcgtgccgt ccctcaacgc
     1681 atcgaacagc ttcgctccgt tagcgtcgat ttccgcatca atcccggcct ctgaaagaac
     1741 tgcgcgcaag accgatgcat cgcgtccatc aggcgcgagg atcagcagcg cattgtcgtg
     1801 attatgctgg tcagccaccc cggtcctcga gaagcgcccc ccgcccctcg taaactggtg
     1861 tgccggtcag cacgccgcgg aaacccgaga gcttttcgcc gacgcgcaca ccgccatcgt
     1921 cgatgcgcat ttcacggatc gagctctcgt gatcgcccgt ccgcttcttg atgacggaga
     1981 tcgcccgtcg gatttctccg ttcgattcga agaaccgcaa cagaagaacg gcgtcggaca
     2041 gataggtcat atcgaccggc gactgcatct ggcccaccat tccgctctgc gccagaatga
     2101 cgaatgtcag gacatcttgc tggttaaggt aggtcagcat ttcgtgcatc tgaaggagca
     2161 ggaactgctc ttccggcatg gcgtgctgat agccagtgag cgaatccagg acgacgatgc
     2221 gaacgccggc ttctttcacc gctttcgaaa cggacccggc tagctcaccc ggcgacagct
     2281 cggcgggatc gacctgccgg aacaggaagt ctcccttctc ctgcgcctcc tcgaaattcc
     2341 agccaaggcc ctgcgctcgt tcgtggaaca cgcgttgcgt ctcatcgaag ctcacgaaca
     2401 gcgctctttc accgcgcttt agcgccgccg cagcatattg catggcaatc gtcgatttgc
     2461 ccgacccgga aggacccacg actaacgtcg acgtcccata gtcgagccca ccgccgacca
     2521 gctcgtcaag ctcggcaatg tcgctcttgg ccgaccgccg ctccgccgcc agctggggat
     2581 gcgaaccggc aaccaatctt gggaagacct cgagaccgcc cgtacgaatt aggaaatcat
     2641 gaaatccgcc atggaatgct cgtccccgca tcttgtacac gcgaagccgg cgacgctcgg
     2701 cgccgtaggt cagtgcaatc tgctcgagac gaataacgcc atgggcgagg ctgtgcaggc
     2761 tgagatcatc ctcccgctga gttaggtcgt caagaaacag cacggtgcaa tggcgtgatg
     2821 caaagaagtg cttgagcgcg agcacttggc ggcgaaaacg caatggcccc tgcgccaaca
     2881 ggcgaatttc ggaaaggctg tcgaatacga cacgcgcggg agccacacgg tccacttcct
     2941 ccatgacgag cttgaccgtc tcgccaagtt caaggtccga ggcataaagg atcgactgtt
     3001 cgcgttcagg atcgaggctg agttcgggtg gaacgagttc gaagatctcg atcccgttca
     3061 tgtcccaacc gtgggtctgc gcaacgttaa tcagctcggc gcggccttcg ctgagggtga
     3121 tgtacaggca gcgctcctgt ttgctcttgc cctcgagcag gaattgcaag cccagggttg
     3181 tcttgccggc tccaggctcg ccctcgatga ggtggatgcg attggctgca aagccgccgc
     3241 gcaagatata atccaatgcc ggaagcccgg acgtgaccgg ccctgcttcg tcgagcagct
     3301 cggctgctcc cttgtgatct cgcaattgca actcccaccg aacggcgcgg tgctttaacg
     3361 actgtaaata acgatgaaaa gcgccagcgg ttgatgagcg gcaggaagtg ctcgattaca
     3421 gacgcttagc tgcaactcgt gactattttt ccctgatcct gctcgaatgc gcctggccat
     3481 tgccagccag ccgcagcccg ccgagcagct tcggcggaca agcgctcgct gcgccgttaa
     3541 cgcccgctct tcgcccgacc tagtggcggc gacgggcggg cactggttcg gcggccggaa
     3601 caggagcggc aatagccgac attccaccga gctggctcac gagcttcttg taggcatcga
     3661 gatacgcgag cacgatcact tggccgattt cggtattctg gtatccatag ccgcccgcgg
     3721 cagcgaagcc gccccaccag ccagcgccgc cgcccgcgcc ccagctgacg tccgtcttgc
     3781 gcgcatatcc ctcggtcagg gcttcctctt cggtcgtgcg cgagttcacc agcgaaagcg
     3841 tcacattggc ttcgcccttt ttgacgttga tgcctccagc aatagccccg acggcaccgc
     3901 cccagccgcc aaggtgaccg agcagaccgc cgattgccgc gcccgcaccg ccgccacccg
     3961 aattcttgtt tgtgctcacg atatctggct gcagaaaata atccgcagcc ttgacctgac
     4021 ctgctcccat gcgacttcca cgctgcaatt ctccctggtc ggcaagtgct cgctccatgg
     4081 cgcggctttg catggcgcgg tcgcgattga cgagcgtgaa gcatccggac tgctgcacga
     4141 acaccttgat gaccgcttcg ggacttccaa ggttcaattc gcgccaccat tccttgtcgg
     4201 gcggaacaat tgccaacgtg ccgatacgat gtgaacagac gggaatttcc tgttcaccgc
     4261 gaacctggt
//
LOCUS       DASRBJ010000333        10301 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_193244,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000333 DASRBJ010000000
VERSION     DASRBJ010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 10301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10301
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193244"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1573
                     /locus_tag="VE968_09185"
     CDS             <1..1573
                     /locus_tag="VE968_09185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidase M61"
                     /protein_id="HZU52032.1"
                     /translation="VYAFHVAVPEGVNAVDVDFQYVSPTSGNQGRIVATPDMASIEWI
                     ANSMYPAGYYVRDIPIQASVIVPAGWKVATALRPSAQSGTRIDYPVTNYEILMDSPLI
                     AGAHYRRFELTPDVALDVIADNESELAATPAQIDSHKRMVDQALKVFGAQHYDHYDFL
                     LTISDYLGGEGLEHHRSSEDGVRRGYFTDWDNHLSDRSSLMPHEYTHSWNGKYRRAAD
                     LWTPDYRTPMQDTLMWVYEGQTQFWGYVLAARSGMLSKQDTLDAIAATAATYGPGTPG
                     RVWRSLEDTTNDPIIAQRSPQPWRSWQRSEDYYSEGQLIWIDVDRIIRQQSAGKRSID
                     DFARAFFGMRDRDYGELTYTLDDVVNTLNRVQPYDWRGYLQRRVYDIAPNPPLEGITQ
                     GGYRLIFTDKPTNWTKVAEKTRKTTDLTYSGGFSVGNDGKIGSVLWDSPAFDAGLTIG
                     SEIVAVNGRKFGSDAIKEAIKAAAGNGSPPELLIHDGDVYRTVKLDWHGGLRYPRLEK
                     VGTGPGTLDALLAPR"
     gene            1592..3112
                     /locus_tag="VE968_09190"
     CDS             1592..3112
                     /locus_tag="VE968_09190"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003048939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HZU52033.1"
                     /translation="MRHLIIIAAAALAASTAAVAQAPLPAELNVRTALDRIARIDGVL
                     HSVIAVDPTAIEQARRVDASDKRGPLAGQPVLIKDNIEVAGPLATTAGSLALANNVTN
                     RDAPLVSRLRLAGAIILGKTNLSEWANIRSTHSISGWSAVGGQTHNPWALDRNACGSS
                     SGSAAAVAAGLVRFAIGTETDGSITCPASINGIVGLKPTVGLVSRTHIVPISHSQDTA
                     GPMTATVGEAAQLLTVIAGSDPDDPATIGADKHKRDYAAGLDANALRGTRIGVMRFAS
                     GRLLDPTFNAALDLLRRQGAVLVDIKKFDDRLIGKNESLVLDTELKADMAKYLQGSPA
                     PIQARTLLDLISFDNSHSAQEMSLFGQELFERAQKTKGLDDPAYKKARQVSFEAAGPG
                     GIDKLLKDYHVVALVGPTAGPAWKIDVVLGDQFSEGGAGSLAAVAGYPHLTVPMGEVR
                     GLPIGLSFMGAKWSEQLLLNLGYAYEQARGPFPTPGFVPSIEESPKIAPLLQPARR"
     gene            complement(3116..4063)
                     /locus_tag="VE968_09195"
     CDS             complement(3116..4063)
                     /locus_tag="VE968_09195"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HZU52034.1"
                     /translation="MKFHLLVAAFLLSFSSARPAAAAAPLPFVVKQVGPGVYACIDGP
                     EHKSGSNAGFVIGDNGVLVVDSFFTPEAAQALVGEIHRLTAKPILYIVNSHYHLDHTG
                     GDQVLRDAGAIIIAHRNVRAWLRTYNIHLFGDRITPELQERIERLPLPDIVTDTSLAI
                     WLGSRKVVIRAMPGHTGGDLTIFVPDARVLFTGDLFWRKVPPNLIDGTVSDWVATDRA
                     FAEMPSAERLVYVPGHGDVGSDRDVRDFRAYLVDLEKLVSAGRGAHLAGDALVRSIAP
                     KLRMLHRDWIISDRAVGLEIRYMDEELAGTKSRPVSQPD"
     gene            complement(4092..4406)
                     /locus_tag="VE968_09200"
     CDS             complement(4092..4406)
                     /locus_tag="VE968_09200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HZU52035.1"
                     /translation="MAWLWLIVGGCFEVGFTTSLRFVEGFTNFAWTLAFLASVALSMS
                     LLELASRTIPMGTAYAVWGGIGAVGTVLVGMIWFDEPASPVRIALILLIVAAIAALRL
                     TA"
     gene            4456..5103
                     /locus_tag="VE968_09205"
     CDS             4456..5103
                     /locus_tag="VE968_09205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1345 domain-containing protein"
                     /protein_id="HZU52036.1"
                     /translation="MANERTLGNSLAPWRFIAFIGVLVASAIPASLWLGSWGLGVIYS
                     FDVAAGLFLLLCWRIVTIDDPAEMERIARLNDANRTFLLIITAIVMAVLLIAVASETV
                     GRNPRTFAKALIITTLIVAWLFSNTVYALHYAHMAYVTPENGCAGFRFPGTPQPVYWD
                     FVYFAFTCGMAFATSDVEVTDQRIRKVVTFHCLAAFAFNIGVLAFTVNLLASGAS"
     gene            complement(5100..5999)
                     /locus_tag="VE968_09210"
     CDS             complement(5100..5999)
                     /locus_tag="VE968_09210"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HZU52037.1"
                     /translation="MNRAPQHPVQGFLAALGAVAVLSIMDALMKHLVLVLGLIAVSFW
                     RSAASVIISFLLYLPGRGSLPSRRTIRLHVVRSLIVTLLAALFFWGIARVPLAQAIAL
                     TFIAPLIAMLLAAWTLDERIGRRSAVGAVAAFAGVLVIVIGQARSNVDEDVLLGIAAI
                     IASALCYAVNIVLMRHQALAAKPVEINFFQSLTVTIVWVCVTALEGAPSWPRLEWYWI
                     LLAAILSTSGTLLFAWGYARGPASYLAVTEYSGFLWASVMGWLVFSERVSLYTAAGAV
                     LIVGGCWVGSRSKALPPEIDVAA"
     gene            complement(6020..6145)
                     /locus_tag="VE968_09215"
     CDS             complement(6020..6145)
                     /locus_tag="VE968_09215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52038.1"
                     /translation="MVKLLVLVMLAGALADALFVRAEPPLLIDSSSSPPALDGHG"
     gene            complement(6185..7315)
                     /gene="ispG"
                     /locus_tag="VE968_09220"
                     /gene_synonym="gcpE"
     CDS             complement(6185..7315)
                     /gene="ispG"
                     /locus_tag="VE968_09220"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011414992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HZU52039.1"
                     /translation="MSSIRPWRMIERRKSRQIMVGSVPVGGGAPVTVQTMTNTPTENA
                     RATIDQIRRCEEAGADIVRVSCPTAEATAALKEIVRAARVPIVADIHFHYKRALEAAD
                     AGAACLRINPGNIGSEARVREVIAAARANGCAIRIGVNAGSLEKDLLEKYGEPCPEAL
                     VESALDHVRILEDHGFREYKVAVKASDVFLAVAAYQQLAGELDCPLHLGITEAGGLIG
                     GTVKSSIGIGSLLWAGIGDTIRVSLSAEPEEEVRVGYEILKALGIRSRGVRIVSCPSC
                     ARQGFDVIRTVEALEARLQHIKTPMSLSVLGCVVNGPGEARETDIGITGGGNGTHMVY
                     LSGVTDHHVQDADMIEHIVRLVEAKADELERLAIEPTLDAAE"
     gene            7436..9583
                     /locus_tag="VE968_09225"
     CDS             7436..9583
                     /locus_tag="VE968_09225"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HZU52040.1"
                     /translation="MTKLARISSNNRPSNTGADVPVPRLRTRFYAFLSYSHKDRELAD
                     WLHRELERFRVPHALAGKLTANGVVPRRLSPIFRDQHDLSAGGDLAEEIKAALAASQF
                     LVVLCSPTAAKSRWTNQEIESFKRTRPEGCVLAAVVAGEPFASDIPGREHEECFPPAL
                     RYKYDRRGHQTHKRADPLAADFRESGEGQRLAFLKLVAGMLGVGLDELVQREQTRHQK
                     RLAFVAAASIAGMAITSSLAIAAFQARNEAREQRRQAEGLVAFMLGDLKDKLEPIGRL
                     DALDGVGSRVLAYYSNQNASDLTDAALAQRSEALSLMAQVANARGDGRTAAKLYRQAM
                     AGTAEAVRRNPNDAQAIFKHAQNVFYVGELAQNDGDLKTAEASMREYKRLAREMVALQ
                     PDSMKYRMEEQYADTDLGVVLSDQRRFSEAVAQFDQGLSTMEAISTADPRNEDYRESV
                     AESLAWLADAERAVGNYDRAIALRRRNVEIFSTMFAQTRNVKYREHAIPAMFALGRAY
                     AETGNQGLAADEFRAAIAQSELLKTVEPTNATWAEFGFEAHLYLANVLIGSSNNSEGA
                     AQLTAACEQLDLLLRRGNPKPTWRQSLVRCLSLRAQLALNSNDTGEALKLANRALDAA
                     RLTHSVDRISDTFLLARAYRMLGDVDRARGDLEGAQSAWNAALSSLPVGLLEKPDEIA
                     ARMTILQRLGRTAEAQSLEQRLLAMGYRANPLT"
     gene            9601..10077
                     /locus_tag="VE968_09230"
     CDS             9601..10077
                     /locus_tag="VE968_09230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52041.1"
                     /translation="MSRPRAKLHEVTVTASKDADEFRFDAGSEIWDESISGLCFRKDH
                     HGLTKKDYHLIEFVLTDRTGEGLTFPNAPHQAMWVTKANAGDKHPCPNAETPSDYSVI
                     EPMSISDDRRRLIVRNDNPERERWAFTLNFVKREDHSADASHYVSWDPIIDNHNGG"
     gene            10114..>10301
                     /locus_tag="VE968_09235"
     CDS             10114..>10301
                     /locus_tag="VE968_09235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52042.1"
                     /translation="MTGVTLSAIVHRTQTGEFSYWELSGSNATNCQSPATCTVTIAQG
                     NKADFAISISDPQGPSSGP"
BASE COUNT         2239 a         3080 c         3035 g         1947 t
ORIGIN      
        1 tgtctacgcg tttcacgtcg ctgttcccga gggcgtcaac gcggttgatg ttgattttca
       61 gtatgtttcg ccaacgtccg gaaaccaggg tagaattgtt gcaactcccg acatggcaag
      121 catcgagtgg atcgccaatt cgatgtaccc ggccggctat tatgttcgcg acatcccgat
      181 tcaggcttcg gtcatcgttc ccgcaggatg gaaggtcgcg acggcactgc gccccagcgc
      241 acagagcgga actcgtatcg attatccggt caccaattat gagatcttga tggattctcc
      301 gctaatcgcc ggtgctcatt accgccgatt tgagcttacg ccggacgttg ccctcgatgt
      361 catcgccgat aacgaatccg agctcgccgc aacgcccgcc caaatcgaca gtcacaagcg
      421 aatggttgat caagcgctca aggttttcgg tgcgcagcat tacgaccatt acgactttct
      481 tctcacgatc tccgattatc tcggcggcga ggggctcgaa catcatcgaa gctccgagga
      541 cggagtaaga cgcggttatt tcaccgattg ggacaaccat ctcagtgacc gaagctcact
      601 gatgccgcac gaatataccc acagctggaa cggcaaatat cggcgcgcgg cggatctctg
      661 gacacccgac tatcgaacgc cgatgcagga cacgctgatg tgggtctacg aaggccagac
      721 gcagttttgg ggttatgtgc tcgcggcgcg ctctggcatg ctcagcaagc aggatacgct
      781 cgacgcaatt gcagccacgg cagcgaccta tggacccggc acgccaggac gcgtctggcg
      841 atcgcttgaa gatacgacca acgacccgat cattgcacag cgatcgccgc agccgtggcg
      901 cagctggcag cgcagcgagg attattacag cgaaggtcag ctcatctgga tcgatgtcga
      961 ccgcatcatc cgtcagcaat cggcggggaa gcgctcgatc gacgatttcg cgcgagcctt
     1021 cttcggcatg cgcgatcgcg actacggcga gttgacctac acacttgatg acgtggtcaa
     1081 tacgctgaac agagtccagc cgtatgactg gcgcggatat ctgcagcgtc gcgtttacga
     1141 cattgctccc aatccgccat tggaaggaat cacgcagggc ggctatcggc tgatcttcac
     1201 ggacaagccg accaactgga caaaggtggc cgagaaaaca cgaaagacga ccgatcttac
     1261 ttattcgggc ggattttcgg ttggcaacga cggaaagatc ggaagcgtgc tgtgggacag
     1321 tccggcattc gacgctggac tgacgatcgg ttctgaaatc gtcgccgtga atggccgtaa
     1381 attcggcagc gatgcgatca aggaagcaat caaggctgcg gcaggaaatg gcagtccacc
     1441 cgaactcttg atccacgacg gcgacgttta tcgaacggtc aagctcgatt ggcacggtgg
     1501 gctgcgctac ccgcggctcg aaaaggtcgg cactggacca ggtacgcttg acgcgttgct
     1561 tgctcctcgc tgatcgaaaa cggaggccgg catgcgtcac ctgatcatta tcgcagcagc
     1621 tgcacttgca gcgtcaacag cggccgtcgc acaagcgccg ctaccggcag agttgaatgt
     1681 ccgaaccgcg cttgaccgga tagctcgcat cgatggggtg ctgcattcgg tcatcgccgt
     1741 cgaccccacg gcgatcgagc aggcaaggcg ggttgacgca agcgataaac gaggaccgct
     1801 cgccggacag cccgttctca tcaaagataa tatagaggtg gcgggtccac ttgcgactac
     1861 cgcggggagc ctcgcgcttg cgaacaatgt gaccaaccgc gatgcgcccc ttgtttcccg
     1921 gctccgcttg gcgggcgcga tcattctggg gaaaaccaat cttagcgaat gggccaacat
     1981 tcgttcgacg cactcgatct ccggctggag cgccgttggt ggacagacac acaatccatg
     2041 ggcgcttgat cgaaacgcgt gcggttcgtc gagtgggtca gcggcggccg tcgccgctgg
     2101 actggtccgg tttgcaatcg ggactgaaac ggatggctcg attacgtgcc cggcttcgat
     2161 caacggcatt gttggtctca agccgacggt tggtctcgtt agccgaacgc atatcgttcc
     2221 gatcagccac agccaggaca ctgccggtcc aatgactgcc accgtcggcg aggctgcaca
     2281 gctgctgacc gtaatcgccg gcagcgaccc tgacgatccg gcgacaatcg gtgcggacaa
     2341 gcacaagcgc gattatgcgg ccgggctgga cgccaatgcg ctgaggggca cacgcattgg
     2401 cgtaatgcgc ttcgcgtcgg ggcggttact tgacccaaca ttcaatgccg ctcttgacct
     2461 actgcgccgg caaggcgcgg tcctcgtcga catcaagaag ttcgatgacc ggcttattgg
     2521 gaagaacgag agcttagttc tcgacactga gctcaaggct gacatggcaa agtatctgca
     2581 aggcagccca gcaccgatcc aggctcgcac tcttctcgat ctcatttcct tcgacaacag
     2641 tcattcggca caggaaatgt cgctgttcgg ccaggagctg tttgagcggg cgcaaaaaac
     2701 caagggactt gatgatcctg cgtacaagaa agcaagacag gtgagcttcg aggcggctgg
     2761 cccgggaggg atcgacaagc ttctgaagga ttatcacgtc gtcgcgctgg ttgggccaac
     2821 ggccggtcca gcatggaaaa tagacgtggt tctcggcgac cagttcagcg agggcggtgc
     2881 cggaagtttg gccgcagttg cgggttatcc acatctgacg gttcccatgg gagaagtaag
     2941 agggctgccc attggcttga gcttcatggg tgccaagtgg tccgaacagc tgctcctcaa
     3001 cctcggctat gcgtatgagc aggctcgagg gccgttcccg acgcccgggt tcgtgccgtc
     3061 gatcgaggaa agtccgaaaa tagcgccgct ccttcagcct gcgcgacggt agtggctagt
     3121 cgggctggga gaccggccgg cttttagtcc cggcgagttc ctcgtccatg tagcggatct
     3181 cgaggccgac ggctcgatcg ctgatgatcc agtctcggtg aagcatgcgt agctttggag
     3241 cgatgctcct taccagtgcg tctccagcga gatgcgcgcc gcgcccggcg ctcaccagct
     3301 tttcaaggtc gacgagatag gcgcgaaagt cccgcacatc gcgatcgcta ccgacgtcgc
     3361 cgtggcctgg tacgtacaca agccgttcgg cgctcggcat ttcggcaaag gcgcgatcgg
     3421 tagccaccca atcgctaacc gtaccgtcga tgagattggg tggaactttg cgccagaaca
     3481 aatcgccggt gaacagcacc ctcgcatcgg gcacaaagat cgtgaggtct cctccagtgt
     3541 ggccaggcat cgcccgaatg acgactttgc gcgatccgag ccaaatagcg aggcttgtgt
     3601 cggtaactat gtccggcaac gggagccgct caatccgctc ttgtagttcc ggcgtgatgc
     3661 ggtcgccaaa caaatgaatg ttgtaggtcc tgagccaggc gcggacattg cgatgggcaa
     3721 tgatgatcgc gccggcgtcg cgaagaacct gatcgccgcc cgtgtgatcg aggtgatagt
     3781 gcgagttgac gatatagagg atcggcttgg cggtgagccg gtgaatttca ccgacaagcg
     3841 cctgcgccgc ttcgggcgta aagaagctgt cgacgaccag cacgccatta tcgccgatca
     3901 cgaagcccgc gttcgacccc gacttgtgct ccgggccgtc gatgcacgcg taaacaccag
     3961 ggccgacctg cttgacgacg aacggcagcg gggctgcagc ggcggccggt cgggctgaac
     4021 taaacgacag aaggaaagca gcaacgagca aatggaactt caccaggcga tctcgaagaa
     4081 agcaggtttc cttatgcagt taaccgcaat gcggcgattg cagcaactat gagcaggatg
     4141 agagctattc gaaccgggct tgccggctca tcgaaccaga tcatgccaac cagcacggtc
     4201 ccgaccgcgc cgatcccccc ccaaaccgcg taggcggttc ccatcgggat cgtacgcgac
     4261 gcaagctcga ggaggctcat gctcagcgca accgacgcga ggaatgcaag cgtccacgca
     4321 aagttggtga agccttcaac aaagcggagc gatgtcgtga accccacctc gaaacatccc
     4381 ccgacgatga gccagagcca ggccatgccc aatcctttca ctggacgccc gcaatgcacg
     4441 gactagtttt gcgcaatggc gaatgagcgg actctcggca acagcctcgc cccgtggcgc
     4501 ttcatcgcct tcatcggcgt gttggttgct agtgcaatcc cggcaagcct gtggcttgga
     4561 agctggggcc ttggggtcat ctattcgttc gacgttgcag caggtctttt cctgctcctg
     4621 tgctggcgga ttgtgacgat tgacgatcca gctgaaatgg agcgcatcgc gcggttgaac
     4681 gacgccaacc ggacgttcct tctcatcatt accgcaatag tgatggcggt tctgctgatc
     4741 gcggttgctt ctgagaccgt cggccgaaat ccgcgaacct tcgcgaaagc gctcatcatc
     4801 acgacgctga ttgtcgcctg gcttttcagc aacaccgtct acgcgcttca ttacgcgcac
     4861 atggcctacg tcacgcccga gaacggctgc gcggggtttc gtttccccgg gacgccacag
     4921 ccggtctact gggattttgt ttattttgct ttcacgtgcg ggatggcctt cgcgacatcg
     4981 gacgttgaag tgaccgatca acgaattcgc aaagtcgtga cctttcattg tctcgcggca
     5041 tttgccttca atatcggcgt gctcgcattc accgtgaacc tgctcgcgtc gggcgctagc
     5101 taggccgcga catcaatctc gggtggaagt gctttgctgc gcgaaccaac ccagcagccg
     5161 ccgacgatca gaaccgcgcc agccgcggtg taaagggaga cgcgttccga gaacaccaac
     5221 catcccatga ccgacgccca caagaacccg ctatactcgg taacggcgag atagcttgcc
     5281 ggaccccgcg catatcccca ggcaaagagt aacgttccgg acgtcgagag gatcgccgcg
     5341 agaaggatcc agtaccactc gagccttggc catgagggcg ctccttcgag ggcggtcacg
     5401 caaacccaga ctatggtaac ggttagcgac tggaagaaat tgatttcaac tggtttggca
     5461 gcgagcgcct ggtggcgcat gagaacgata ttgacggcat agcaaagggc cgaggcaatg
     5521 attgccgcga tgccgagcag cacatcctcg tcaacgttgg acctcgcctg gccaatgaca
     5581 atgaccagta cgccggcaaa ggcggcaacc gccccgacag ccgatcttcg accgatgcgc
     5641 tcatcaagcg tccaagcagc aaggagcatc gcgatgagtg gcgcgatgaa cgtaagcgcg
     5701 atcgcctggg cgagcggcac gcgcgcgatg ccccagaaga acaatgccgc gagtagcgtc
     5761 actatgaggc ttcggacaac gtgcaagcga atagtgcgtc tgctcggcaa tgaaccgcgc
     5821 ccgggtagat acagaagaaa actgatgatc acgctcgccg cggagcgcca gaagctgact
     5881 gcgatcagac caagtacgag caccaagtgc ttcatgagcg cgtccatgat cgaaaggacc
     5941 gcgacggcgc cgagtgcggc gagaaagccc tggactggat gctgtggcgc gcggttcacg
     6001 ataccgcgac tagcggcgtt cagccgtggc cgtcgagtgc tggtgggctg gatgacgagt
     6061 cgatgaggag cggcggctca gctcggacga aaagagcgtc cgcaagcgct ccagcgagca
     6121 tgacaagaac tagcagcttg accaccggcg catgctgcgc tcgcaaggta aataaagact
     6181 gaagtcactc agccgcatcg agcgttggct caattgccaa tcgctcaagc tcgtcggcct
     6241 tggcttcaac cagcctcaca atatgctcaa tcatgtcagc gtcttgcacg tggtgatccg
     6301 tcacccccga cagatagacc atgtgcgtgc cattgccgcc tccggtgatg ccaatgtcgg
     6361 tctcgcgcgc ctctccagga ccgttaacga cacatccgag gaccgagagc gacatcggcg
     6421 tcttgatgtg ctggagacgc gcctcgagcg cctcgaccgt gcgaatcaca tcgaagcctt
     6481 gtcgtgcaca gcttggacag gagacgatgc ggacgccccg actgcgaatt ccaagtgcct
     6541 ttagaatctc gtagccgacg cgaacttcct cctccggctc tgccgacaat gagacgcgaa
     6601 tcgtatcgcc gatcccggcc cagagcagcg acccgatgcc gatcgaggac ttcacggtcc
     6661 cgcctataag gccgccagcc tccgtgatcc cgaggtgcag tgggcaatcg agttcgccag
     6721 cgagttgctg ataagctgca acggccaaga acacgtcact tgctttcacc gctaccttgt
     6781 attcacgaaa gccatggtcc tcgaggatac gaacgtgatc gagggcgctt tcgacgagtg
     6841 cttctgggca gggctcgccg tatttctcca gcaaatcctt ctcgagactg ccggcattga
     6901 ctccgatccg gattgcgcaa ccgtttgcgc gtgccgcggc gatgacctca cgaacccgcg
     6961 cttctgatcc gatgttgccc gggttgatac ggaggcaggc tgcgcccgca tcagcagctt
     7021 ccaacgcgcg cttgtagtga aagtgaatgt cagcaacgat tggaacgcgc gcggcacgta
     7081 caatttcctt aagcgccgcg gtcgcttccg cggtcgggca ggagacgcgg acgatgtccg
     7141 caccggcttc ctcacaacgg cgaatctgat caatcgtcgc cctggcattc tccgtcggcg
     7201 tgttcgtcat cgtctgaacc gtgacgggcg caccgccgcc gacgggaacc gaacccacca
     7261 tgatctgacg agacttgcgg cgctcgatca tgcgccacgg acggatggag gacattagct
     7321 caatatagtc agctcgccgc cgatcggcaa agcacgcgtg gatgcgagaa gcgattattc
     7381 gcgactccta tcttgttgtg ttaacgaggt taacgagaat cgtcgggggc ggcctatgac
     7441 caagcttgcc cgaatatcgt caaataaccg cccctcgaat acgggcgcgg acgttcccgt
     7501 gccgcggcta agaacgcgtt tctacgcgtt tctgagctat agccataaag acagggaact
     7561 cgccgattgg ctgcaccgag agcttgaacg atttcgcgtg ccgcacgcgc tcgcgggcaa
     7621 gctgaccgcc aacggcgtgg tgccgcggcg gttatcgccg atctttcgcg accaacatga
     7681 cctgtccgcc ggcggcgacc tagccgagga aatcaaggcg gcgcttgcgg cctcgcagtt
     7741 cctcgtcgtc ctctgttcac caaccgcagc gaaatcgcgc tggacgaacc aagaaatcga
     7801 aagcttcaag cgaacgcgcc ccgaaggatg cgtgctcgcc gccgttgtcg ccggcgaacc
     7861 ctttgccagt gacatcccag gacgtgaaca cgaggagtgt ttcccgcccg cgctgcgata
     7921 caaatatgat cgacgcggtc accaaacgca caagcgcgcc gaccccttgg ctgcagactt
     7981 tcgggaaagc ggcgagggac agcggctagc cttcttgaag ctcgtcgctg gaatgcttgg
     8041 tgtcgggctc gacgagctcg tccagcgtga acaaacgcgc catcagaaac gccttgcatt
     8101 cgtcgcagca gcttcgattg cgggaatggc gatcacgagt tctcttgcaa ttgcagcgtt
     8161 ccaagcgcgg aacgaagcgc gcgagcagcg ccggcaggca gagggtctcg tcgccttcat
     8221 gctcggcgat ctcaaggaca agctcgagcc aatcgggcgc ctggacgcgc tcgacggtgt
     8281 cggctcgcgc gttctcgctt actacagcaa ccagaatgcc tcggacttga ccgacgctgc
     8341 acttgcacag cgttcggagg cgttaagcct catggcgcaa gttgcaaacg ctcgcggcga
     8401 cggacggacg gcagccaaac tctaccgcca ggcaatggcc ggcaccgccg aggccgtgcg
     8461 acgaaatccc aatgatgctc aggcgatctt caagcacgca cagaatgtct tctacgtcgg
     8521 cgaactggcc caaaacgatg gcgacctcaa gacggcagaa gcatcgatgc gcgagtacaa
     8581 gcggcttgct cgcgagatgg tcgcacttca accggacagc atgaagtacc gcatggaaga
     8641 acaatatgcc gacaccgatc tcggcgttgt cctttctgac cagcgccggt tcagcgaagc
     8701 agtcgctcag ttcgaccaag gactgagtac catggaagcg atctcgaccg cagatcctcg
     8761 aaacgaggat taccgcgaaa gcgtcgccga gtctcttgct tggctcgccg acgcagagcg
     8821 agcggttggc aattatgatc gcgcgatcgc tcttcggcgc cggaacgtcg agatcttcag
     8881 cacgatgttc gcgcaaactc ggaacgtcaa atatcgggaa catgcgattc ccgccatgtt
     8941 tgcacttggc cgcgcctatg ccgagaccgg caaccaaggg ctcgcggccg acgagtttcg
     9001 tgcggcaatc gctcaatctg aactactcaa gacggtcgag ccgacaaacg caacatgggc
     9061 cgagtttggg tttgaagcgc atttgtacct tgccaatgtc ctgattggat catcgaacaa
     9121 ttccgaaggg gcagcgcaac ttactgccgc ctgcgaacaa ctcgatttgc tcttgcggcg
     9181 cggcaacccg aaacccacgt ggcggcaaag cctagtccgg tgtctctcgc tacgtgcgca
     9241 actcgcgctc aattcgaacg acacgggcga ggctctgaag cttgccaacc gtgcgcttga
     9301 tgccgctcgc ctcactcata gcgtcgaccg catatcggac acgttcctgc tcgcgcgtgc
     9361 ctatcggatg ttgggcgatg tcgaccgcgc ccgcggagat ctcgaaggcg cgcagtcagc
     9421 gtggaacgca gcactttcga gccttcccgt gggtcttctt gagaagccgg acgagattgc
     9481 agcacgaatg accattcttc agcgcctcgg tcgcactgct gaagcccagt ccctcgaaca
     9541 gaggctcttg gcgatgggtt atcgtgccaa ccctctcact tgagaatgaa ggagcaagtg
     9601 atgtcacggc ctagagcaaa gctgcacgaa gtgacggtca ccgcgtcgaa agatgccgac
     9661 gaattccgct tcgatgctgg ctccgaaatt tgggacgagt caatcagcgg gctgtgtttc
     9721 cgcaaagatc atcacggtct aacgaagaag gattatcatc tcatcgagtt cgtccttact
     9781 gatcgaacgg gcgaagggct caccttccct aacgcgccgc accaagccat gtgggtcaca
     9841 aaggcgaatg ctggcgacaa acatccctgt cccaacgcag agacgccaag cgattacagc
     9901 gtcatcgagc cgatgagcat cagcgatgac cggaggcgat tgatcgttcg caacgataat
     9961 cccgaacgcg agcggtgggc attcactctg aacttcgtga agcgcgaaga ccacagcgcc
    10021 gacgcctcgc attacgtgag ttgggatcca atcatcgaca atcacaacgg tggctagcca
    10081 ctccggcgcg tcaaccaaca agggggaatt ggaatgaccg gtgtaacgct ttcagcgatt
    10141 gtccaccgca ctcaaactgg cgagttcagt tactgggaat tgtccggttc gaatgcgact
    10201 aactgccagt cgccggcaac ctgcaccgtt accattgcgc agggaaacaa ggccgacttt
    10261 gcaataagca tttcggatcc ccaagggccg agttcaggtc c
//
LOCUS       DASRBJ010000334         2936 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_756023,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000334 DASRBJ010000000
VERSION     DASRBJ010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2936
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_756023"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2125
                     /locus_tag="VE968_09240"
     CDS             <1..2125
                     /locus_tag="VE968_09240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HZU52043.1"
                     /translation="AATNGAAGAAAETVNRDARQTAQFVSAAQHWAVEHTRLGIPILM
                     HEESLHGYVARGATSFPQAIALASTWDPALVSRVFGVAAREARARGAILVLAPVVDIA
                     RDPRWGRIEETYGEDPYLVTQMGLAAIRGFQGDSLPLAPDKVFVTLKHFTGHGWPENG
                     TNVGPAHLGERELREDFFPPFEAAVKTFPIQSLMASYNEIDGIPSHANGWLLNDVLRR
                     EWGYRGAVVSDYYGIRELVTRHHLYADVKDAAERAIKSGVDVETPDPEAYAHLPELVR
                     EGRVGTALIDQAVRRVLALKFNAGLFENPYPDPATAQSKTATPDAIALAREAAGRAIV
                     LLKNDKNLLPLNSTSIRRVAVLGTHAKDTPIGGYSDVPAHVVSVLDGIRDEAHGRFAV
                     DYSEGVRITEGHCWSCDNVTLASPELNRKLIAAAVETARRADVVVMVLGGNEATSREA
                     WADQHLGDRDSLELVGQQNDLARAIFALHKPTVVVLLNGRPLAANYLAQNADALLEGW
                     YLGQETGHGVADVLFGKVNPGGKLPVSIPRSVGQLPVFYDHKPTSRRGYLFDTTAPLY
                     PFGFGLSYTSFDVSAPHILTPTIAANQRARIEVAVANTGARAGDEVVQLYIHDDAASV
                     TRPVIELKRFARVTLQPGERRTVTFELGPDDLALWNPEMRKVVEPGTFTISAGPDSVH
                     LKSATLTVSGTPLVLETTAKPSSGE"
     gene            complement(2129..>2936)
                     /locus_tag="VE968_09245"
     CDS             complement(2129..>2936)
                     /locus_tag="VE968_09245"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HZU52044.1"
                     /translation="TPESVGKAIIADLVKAHVPAIGFVNAHWTVDQPATMTVLEGWRA
                     AGLTLGNHTWSHQHLSALTIAQFEEEVARDEPVLRRLAGPTDWRWLRYPFLDEGKDAA
                     QRDAARAVLASRGYKIADVTMDFGDWQWTEPYARCRSNHDERSVAELERMYLAAARGA
                     IDFSRALSHELYGRDIPYVILLHESAFEARMVPKLINVFRAAGFHFVTLAAAERDSFY
                     KDRIDPRLPAGPAGLVNHAFAAGIKLPPQTDYATKLSGFCPVANPAVPNG"
BASE COUNT          578 a          912 c          880 g          566 t
ORIGIN      
        1 tgccgcgacg aacggcgctg ccggcgccgc cgccgaaacg gtaaaccgcg acgctcgcca
       61 gacggcgcaa tttgtgagcg ctgcacagca ctgggccgtt gagcacacgc gcctcggcat
      121 accgatattg atgcacgagg agtcgcttca cggttatgtg gcgcgcggcg ccacgagttt
      181 ccctcaggcc attgctcttg caagcacttg ggaccctgca ctcgttagcc gagtgttcgg
      241 tgttgccgct cgcgaagcgc gtgctcgagg agcgatcctg gtgcttgcgc cggtggtcga
      301 catcgcgcgc gacccgcgct ggggccgaat tgaagaaacc tacggcgagg atccctatct
      361 cgtaacccag atgggacttg ccgcaatcag gggtttccaa ggcgattcgc tcccactcgc
      421 gccggacaag gtgttcgtca cgctgaagca tttcacgggc catggctggc ccgagaacgg
      481 caccaatgtc ggtcccgccc accttggcga acgcgagctc cgtgaggatt tctttccccc
      541 gttcgaagca gcggtgaaga cttttccaat tcagtcgctg atggcgtcct acaatgaaat
      601 cgacgggata ccgagccacg ccaatggctg gcttctcaac gacgtccttc gtcgtgaatg
      661 gggctaccgc ggtgcggtcg tcagcgacta ttatggcatc cgcgaactcg tcactcgtca
      721 ccacttgtac gctgacgtca aggatgccgc cgaacgcgcg atcaagtccg gcgtggatgt
      781 cgagacccct gatccagaag cctatgctca tctgccggag ctggtgcgtg agggacgtgt
      841 cggaacagcc cttatcgacc aggcggtccg gcgtgtgctt gcactcaagt tcaatgctgg
      901 tctcttcgag aatccctatc cggatccagc aacggcgcag tccaaaacgg cgacaccgga
      961 cgcgatcgcg cttgctcgcg aagcagccgg tcgggcgatc gtcctcctga agaacgacaa
     1021 gaatctgcta ccactcaatt cgactagcat ccgccgggta gctgtgcttg gaacgcatgc
     1081 caaggacacc cccattggcg gctacagcga tgtcccggcc catgtggtga gcgtgctcga
     1141 cggcatccgc gacgaagctc atgggcgctt tgccgtcgat tactccgagg gcgttcggat
     1201 taccgaaggg cactgctggt cgtgcgacaa cgtgacactt gcaagtcccg aactgaaccg
     1261 gaagctgatt gccgctgcgg tagagacggc tcgccgagcc gacgtcgtcg tcatggttct
     1321 cggtggcaat gaggcgacga gccgcgaggc atgggcagac cagcacctcg gtgaccgcga
     1381 ctcacttgag ctcgtcggac agcaaaatga tctcgcgagg gccatcttcg cgctgcacaa
     1441 gcctacggtc gtagtgttgc tgaatggccg cccactcgcc gccaactatc ttgcccaaaa
     1501 cgccgatgcg cttctcgaag gctggtatct tggccaggag accggccacg gcgttgccga
     1561 cgtgctgttc ggtaaggtga atcccggcgg caagctaccg gtctccattc cgcgttccgt
     1621 cggacagctc ccggtattct atgatcataa gccgacgtcg cgacgtggct atttgtttga
     1681 cacgacggcg ccactctatc cgttcggttt cggcctcagc tacacaagct tcgacgtttc
     1741 tgcgccgcac atcctcaccc cgacaatcgc tgcaaaccaa cgcgcgcgaa ttgaagttgc
     1801 agtcgcgaac acgggtgcac gcgcgggaga cgaggtagtg caactttaca tccacgatga
     1861 tgcggcgtcg gttactcgac cggtcatcga actgaagcgc ttcgcgcgcg tcacgcttca
     1921 gcccggcgag cggcggacgg tcaccttcga gcttggccct gacgacctcg cgctatggaa
     1981 tccggaaatg agaaaggtgg tcgaaccggg cacattcacg atttcggcag gtccggactc
     2041 ggttcatctc aaatcggcga cgctgacggt gagcggaacg ccgctcgtcc ttgaaacaac
     2101 cgccaagccc tcgagcggtg aataattttc aaccgttcgg cacggctggg ttggccaccg
     2161 ggcaaaaacc cgaaagcttt gtcgcatagt ccgtctgcgg cggcagcttt atgcccgcag
     2221 caaaggcatg attgacgagg cccgccggcc cggcgggtag ccttggatca atgcgatcct
     2281 tgtaaaatga atcacgttct gccgcagcaa gcgttacgaa atgaaatccg gccgctcgaa
     2341 acacgttgat cagtttcggc accatgcgtg cctcgaacgc gctctcatga agaaggatca
     2401 catagggtat gtcgcggcca taaagctcgt gcgaaagtgc gcgagaaaag tcgatcgctc
     2461 cccgcgcggc ggcaagatac attcgctcaa gttcggcaac cgaccgttcg tcgtgattgg
     2521 accgacagcg ggcgtaaggt tctgtccact gccagtcacc aaagtccatc gtcacgtccg
     2581 cgatcttgta gccgcggctt gcgaggaccg cgcgtgcagc atccctctgc gcggcatctt
     2641 tgccctcgtc gaggaacgga tagcgcagcc atcgccaatc ggttgggccg gcgagacgtc
     2701 gaaggacagg ctcatcgcgc gcaacctcct cttcgaactg cgctatggtg agggcgctta
     2761 ggtgctggtg agaccaggta tgatttccaa gcgtcaatcc agcggcgcgc cacccctcga
     2821 ggacggtcat ggttgccggc tggtcgacgg tccagtgcgc attgacgaac ccgatcgcgg
     2881 gcacgtgagc cttgaccaga tcggcaatga tcgccttgcc cacgctctca ggcgtt
//
LOCUS       DASRBJ010000335         3234 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_193517,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000335 DASRBJ010000000
VERSION     DASRBJ010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3234
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193517"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..482)
                     /locus_tag="VE968_09250"
     CDS             complement(<1..482)
                     /locus_tag="VE968_09250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HZU52045.1"
                     /translation="MQHDSDVMEPMVHQDQEPGHESKLEPKPDWEPRYPGSGRLSGKV
                     ALITGADSGIGRAVAALFAREGADIAIAYLCEHDDAAKTRQIVENEGRRAITIAGDIG
                     DKSFCEEAVGRTVGELGRLDILVNNAGEQHWDKDITDIDEEQLRRTFQTNIFGMFFMT
                     "
     gene            complement(489..680)
                     /locus_tag="VE968_09255"
     CDS             complement(489..680)
                     /locus_tag="VE968_09255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52046.1"
                     /translation="MRAKHQTDVKSLKETKPKDLASVGRQTDGFAAESRPSGAPGKSH
                     DQPTPEEFGERGMGFAAKE"
     gene            1159..2904
                     /locus_tag="VE968_09260"
     CDS             1159..2904
                     /locus_tag="VE968_09260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009823185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HZU52047.1"
                     /translation="MLWPKGDAELRARVIIAVLLVLAGKGVTLAGPYALKLAVDRMSG
                     HAAFAVVAGLVLAYTGARFAGVLSDNLRNAIFEKVGQDAARRLAAQVFRHVHDLSLRF
                     HLERRTGSLTKIVERGTKSIDMMLYFLLFNIAPTVIELSAICVIFFVKFGGGLVVATL
                     AIVAIYIAFTRRVTDWRSQIQRDMNDVDNKAIGRAVDSLLNYETVKYFGAEEQEAQRY
                     EEAVGAFARASVRNEVSLAWLNIGQALITNLMMCGAMIFTVWGWSRGRFTPGDVVWIN
                     GLLMQLFRPLDMLGWVYRSIRQGLIDMEAMWDLLDTSADVNDVPGAPALLVTSGNVRF
                     EQVRFGYDPGREILRGLDIDIPAGTSCAIVGPSGAGKSTIARLLYRFYDPQSGRILID
                     DQDVALVSQKSLRAAVGIVPQDTVLFNDTIGYNIGYGRHGATHDDVESAARGAAIDQF
                     ISALPDKYDAMVGERGLKLSGGEKQRVAIARTLLKDPPILVLDEATSALDSRTEQAIQ
                     ETLAKVAQSRTTIMIAHRLSTIVDADQIIVLDEGRVAERGTHDELLEAGGLYAELWQR
                     QAAEQLADEIAQAAE"
     gene            complement(2905..>3234)
                     /locus_tag="VE968_09265"
     CDS             complement(2905..>3234)
                     /locus_tag="VE968_09265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004571 - mannosyl-oligosaccharide
                     1,2-alpha-mannosidase activity [Evidence IEA];
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 47 protein"
                     /protein_id="HZU52048.1"
                     /translation="HALSKSNALRPELADAAINHWLLDGRDEWRHVCRDHFLMMKRWN
                     KSRYGYADLSDVTVTPKLQSDHCPGYWWSEQMKYYWLIFSDTKRVDLSRLYLSTEGNI
                     LRGFRKI"
BASE COUNT          606 a          946 c          951 g          731 t
ORIGIN      
        1 tgcgtcatga agaacatgcc gaagatgttc gtctgaaagg ttcgtcgcag ttgctcctcg
       61 tcgatatcgg tgatgtcctt atcccaatgc tgctcgcccg cgttgttaac gagaatgtcg
      121 agccttccaa gttccccaac ggtccggccc acggcctctt cgcagaagct tttgtcacca
      181 atgtcgccgg cgatcgtaat cgcgcgtcgg ccctcatttt caacgatttg tctcgttttt
      241 gcagcgtcgt cgtgttcgca caggtaagca atcgcaatgt ccgctccttc acgcgcgaac
      301 agcgcagcga cggcgcggcc aatgccactg tccgcgccgg ttatcagagc aaccttgccg
      361 cttaaccggc ccgagcctgg atagcgcggt tcccagtccg gcttcggctc gagcttgctt
      421 tcgtgccccg gttcctgatc ctgatggacc atcggctcca tgacgtcact atcgtgctgc
      481 atctctcgct actcctttgc cgcgaaaccc attccgcgtt cgccgaactc ctccggcgta
      541 ggctggtcgt ggcttttgcc cggagcaccg ctcgggcggc tctccgcggc aaatccgtcg
      601 gtttggcggc cgacgctcgc caaatctttt ggctttgtct ctttgaggga tttgacgtcc
      661 gtttggtgct tggcgcgcat ccttgctcct tgtctcgaga accgttgccg tcgttgctgg
      721 ttcctacggt tcacccgcgc cgaacgcgga ccgtcggcgc tttgacatgt tctgcttctg
      781 cggttctggg tgagccggcg cggcagcgcg ctacgagggt cggaaagtcg aacgcactat
      841 tttctatgag cgccgcgctc gtcgcagcgg tgcattccgc ctgcgtcgcg taatgtgtgt
      901 cgagagtagc cacgggtgtg cacgcagtac cgccgtctgc gcaacccaat attgcgatca
      961 cgaaataacc cggtcccatt ggaaattccc cgataagttg ctgaaacaac cgctcatttc
     1021 gggcagagtt ccttggatct tagtcggtca tcgtttgctc gctcaccttt ccattcctac
     1081 ctaagagcga tggcatcagc acagcttaga gagaagaagc cgaacgcggg tttcgccgct
     1141 ctgtggcggt tcttgccaat gctctggccg aaaggggatg ccgaactacg ggcgcgcgtg
     1201 atcattgccg tgttgctggt gctcgccggc aaaggggtaa cgcttgccgg tccctatgcg
     1261 ctgaagcttg ctgttgatcg aatgagcgga cacgcggcgt ttgccgtcgt cgctggcctg
     1321 gttctcgcct acacgggggc ccgcttcgcc ggcgtgttgt cggataatct gcgtaacgcg
     1381 atcttcgaga aggtgggaca ggacgccgcc cggcggctcg cggcgcaagt gttccgccac
     1441 gtccacgatc ttagtctgag atttcacctc gaacgccgaa ccgggtctct gaccaagatc
     1501 gtcgagcgcg ggacaaagag catcgacatg atgctctatt ttctcctgtt caatattgcg
     1561 ccgaccgtca ttgagctcag cgccatttgc gtcattttct tcgtcaagtt cgggggcggc
     1621 ctcgtcgttg ccacactagc aattgtggcg atctatatag cgttcacgcg tcgcgtgacc
     1681 gattggcgct cgcagatcca gcgtgacatg aacgacgtcg acaacaaggc gattggacga
     1741 gcggtagatt cgcttctcaa ttacgagacc gttaaatatt tcggcgccga ggaacaggag
     1801 gcacagcgtt acgaagaagc cgttggcgcc ttcgcccgcg catcagtgcg caacgaggta
     1861 agtctcgcct ggctcaacat cgggcaggca ctgatcacca atctcatgat gtgcggtgca
     1921 atgatcttca ccgtttgggg ctggagccgt gggcggttca cgcccggcga cgtggtgtgg
     1981 atcaacggtc tgttgatgca gctctttcgt cctctcgaca tgcttggatg ggtttaccgg
     2041 tccattcgac agggcctgat cgacatggag gcaatgtggg acctccttga tacgtctgcg
     2101 gacgttaatg acgtaccggg cgcgccagca ttgctcgtga caagcggtaa cgtccgcttc
     2161 gagcaggttc ggtttggtta cgatccggga cgagaaatcc tccgtgggct cgatatcgac
     2221 atccctgccg gcacgagctg cgcgatcgtt ggcccctcgg gcgcaggcaa gtcgacaatc
     2281 gcgcgcctcc tgtatcggtt ctacgatcca cagagcgggc gtatcctgat agacgatcag
     2341 gacgtcgcgc tcgtaagcca aaagagcctt cgcgcagcgg ttggcatcgt tccgcaggac
     2401 accgtgctct tcaacgatac cattggatac aacattggct acgggcgtca tggcgcaacg
     2461 catgatgatg tcgaatcggc agctcgcggt gcagcaatcg accaattcat ctcggctctt
     2521 cccgacaaat atgatgcgat ggtcggcgag cgcgggttga aactttctgg aggtgagaag
     2581 cagcgcgtcg caatcgcgcg gaccttattg aaggatccgc ctattctcgt tctcgatgag
     2641 gcaacgagcg cacttgatag ccgtaccgag caggcgatcc aggagacgct cgcgaaggtc
     2701 gcgcaaagcc gcacgacgat catgatcgca caccggctct cgacaatagt cgatgcagac
     2761 cagatcattg tcctcgatga gggccgcgtt gctgaacgcg gaactcatga tgagctcctt
     2821 gaagcgggcg gtctttacgc tgagctgtgg cagcgccagg cggccgagca gctcgcggat
     2881 gagatcgctc aggccgccga atgatcagat cttacggaag ccccggagta tgttgccttc
     2941 cgtactgagg tagagccgcg agagatcgac gcgcttcgtg tcggaaaaga taagccagta
     3001 atatttcatc tgttcggacc accaataacc cgggcagtgg tcgctctgga gcttcggtgt
     3061 aacggtgacg tcactaaggt cagcataacc gtaacgcgac ttgttccaac gtttcatcat
     3121 caggaaatga tcgcgacaga cgtgtcgcca ttcgtcgcgc ccgtcgagga gccaatgatt
     3181 gatcgcggca tcggcaagtt ccgggcgcag cgcgttcgac ttgctgagcg cgtg
//
LOCUS       DASRBJ010000336         3298 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_249354,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000336 DASRBJ010000000
VERSION     DASRBJ010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3298
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249354"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..352
                     /locus_tag="VE968_09270"
     CDS             <1..352
                     /locus_tag="VE968_09270"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU52049.1"
                     /translation="KTVSDAAFPSAVGKMIPQVPRRKATLVASWRARKRLTLTGAVRY
                     SSRMYGTIDNSDIVGHTYQGFEGYVVADARAIYELSPRIDVALGVENLTDKRYFLFHP
                     FPGRTFTAELNWHL"
     gene            370..816
                     /locus_tag="VE968_09275"
     CDS             370..816
                     /locus_tag="VE968_09275"
                     /inference="COORDINATES: protein motif:HMM:NF019599.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1775 domain-containing protein"
                     /protein_id="HZU52050.1"
                     /translation="MRSILILLACLAAAPASAHVTIWPKESAAGMREKYEVRMPDEKP
                     VDTVALELHVPAGVKLDSVEQKPGWQSAFMRDGSGAIIGVRWSGRLEPMHFVEFGLIA
                     TNPPAASELVWNATQLFADGSKVEWSGVPGSKTPAPRVSLGARARD"
     gene            complement(818..1630)
                     /locus_tag="VE968_09280"
     CDS             complement(818..1630)
                     /locus_tag="VE968_09280"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HZU52051.1"
                     /translation="MTHCPATKAIAVAVALTPAPALAAPPPGYTLVWSDEFDKGTAPD
                     LAKWSYDTQANKLRWWHDEAQYYTANRPENARIQNGRLIIEVRHEALTSERDYGGQHY
                     TSARLITRGKAEWTYGFFEIRAKLPCNRGGWPAIWLVGPNWPSGGEIDIMEQLGFDPT
                     TIYGTLHSPFTEKEHVTEHGITKVPTSCSAFHDYQAEWTPGAISIAVDGKPYATIKRP
                     EKATAYNWPFDKPEFLILNVAMGGGWAGQKGIDEAALPARMEVDYVRVYQKE"
     gene            complement(1627..3282)
                     /locus_tag="VE968_09285"
     CDS             complement(1627..3282)
                     /locus_tag="VE968_09285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003043170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family metallopeptidase"
                     /protein_id="HZU52052.1"
                     /translation="MSMKPFATLLLTLAIGATPPQVSTERMSAITRTLASDAFEGRAP
                     GTRGEDKTIPYLIEQFKAAGLSPAGENGGWTEEVPMIHTQVRSPVNVSVTQSGQSVPL
                     RFPDDIYLGTVRPVDDVRIVNAPMVFVGYGVTAPERGWDDFKGVDLHGKVAVMLVNDP
                     DFEAAPGEPVAGKFGGKTMTYYGRWTYKYEEAARRGAIAALVVHQTDAAGYPWNVVKS
                     PAGESYNIVLPKGAQQPVLLQGWIQQSVAEALLKRAGYDYQAVKREARTTSFRPIDLK
                     ARFSASIPVTVTRITSHNVLGKLTGSRYPDETISYGAHWDAYGIGPADAQGRTIRAGA
                     SDDALGLAAMLEDARLFSSGPRPQRTILFAAWTGEERGLLGSEYYAEHPLFPMEKMVA
                     NLTFDTLQFNGPVKDAVLVGRGQSEMEDYLAAAAKAQGRYITDENHPERGLFYRADHF
                     SFAKRGVPVLLDMALAGAYDMVNGGRPAGERWLDSFTTNCYHQTCDAWSPSWDLRGAA
                     QEAELFYLVGARLANSRDWPKWNPTSEFAKVRAKSAAVRASGR"
BASE COUNT          604 a         1009 c         1019 g          666 t
ORIGIN      
        1 gaagacggtc tcggacgcgg catttccaag cgcggtaggc aagatgatcc cgcaggttcc
       61 gcgacgaaag gcgacgttgg ttgcaagctg gcgcgcaagg aagcgtctca ccttgactgg
      121 cgccgttcgc tactcgagcc gtatgtacgg cacgatcgac aatagcgata tcgttgggca
      181 cacgtaccag ggtttcgagg gctatgtcgt cgcggatgca cgggcgatct acgagctctc
      241 gccaaggatc gatgtcgcgc ttggcgtcga gaaccttacc gacaagcgtt acttcctctt
      301 ccacccgttt ccaggccgga ccttcacggc cgagcttaac tggcacttgt gagaggaggt
      361 gcttcaacca tgcgatcgat cctgattttg ctcgcctgcc tcgccgctgc gccggcgagc
      421 gcacatgtca cgatttggcc gaaagagagt gccgccggca tgcgcgaaaa atatgaagtg
      481 cgaatgcccg acgagaagcc ggtcgacacc gtcgccctcg aactgcatgt gccggcgggt
      541 gtcaaactcg actccgtcga gcagaagccg ggctggcaaa gcgcattcat gcgcgatggt
      601 tcgggcgcaa taatcggcgt tcgttggagt ggacggctgg agccgatgca cttcgtcgag
      661 ttcggactca ttgcgaccaa tccaccggct gcaagcgagc tcgtttggaa cgccacgcag
      721 ctttttgccg atggctcgaa ggtcgaatgg agcggggttc ccggatcaaa gacaccggcg
      781 ccgcgcgtca gccttggcgc gcgcgcacgc gactagccta ttccttctgg tagacgcgga
      841 cgtagtcgac ttccatccga gcaggcagcg ccgcttcgtc gatccccttc tggccagccc
      901 atccgccacc catggcgacg ttgaggatca ggaactcggg cttgtcgaac ggccagttat
      961 acgcggtcgc cttctcgggc cgcttgatgg ttgcataggg ctttccgtcg accgcgatgc
     1021 tgatcgcgcc gggcgtccac tcggcctggt agtcatggaa cgccgagcag gacgtcggga
     1081 ctttggtgat cccgtgctcc gtcacatgct ccttttcggt gaaaggcgag tgaagcgtac
     1141 cgtagatcgt cgtcggatcg aagccgagct gctccatgat gtcgatttcg ccgccgctcg
     1201 gccaattggg gccgacaagc cagatcgccg gccatccgcc gcggttgcat ggaagctttg
     1261 cccgtatctc gaagaatccg tacgtccact cggccttgcc tcgcgtaatc agccgggccg
     1321 acgtataatg ctggccgccg taatctcgct cgctggtcaa ggcctcgtgc cggacttcga
     1381 tgatcaggcg accattttgg atccgtgcgt tttccggtct gttcgccgta taatattgtg
     1441 cttcatcgtg ccaccaccga agcttgttcg cttgcgtgtc gtagctccac tttgcgaggt
     1501 cgggtgcggt tcccttgtcg aattcatccg accagacgag cgtgtaaccg ggaggcggcg
     1561 cagcaagtgc cggagccggc gtgagcgcga cggcgacggc gatggccttg gtggctgggc
     1621 aatgggtcaa cgtcccgagg cgcggactgc ggcgcttttc gcgcgcacct tcgcaaattc
     1681 cgaggtcggg ttccacttgg gccaatccct gctgttcgcg agacgcgcgc cgacgagata
     1741 gaataactcc gcttcctggg cggcgccacg aagatcccag ctcggcgacc aggcatcaca
     1801 ggtctggtga tagcaattgg tcgtgaagct atcgagccag cgttcgccgg ccggccttcc
     1861 gccattcacc atgtcatagg cgcccgcgag cgccatatcg agcaacacgg gaacgccgcg
     1921 cttcgcgaac gagaaatggt cggctcgata aaagagcccg cgttcgggat ggttctcgtc
     1981 cgtgatgtag cgcccctgcg cttttgcggc cgcagcaaga taatcttcca tctcgctctg
     2041 cccgcgtccg acaaggaccg catccttgac gggaccgttg aattgcaagg tgtcgaacgt
     2101 caggttcgca accatcttct ccatggggaa gagcgggtgc tcggcataat attcagaacc
     2161 aagaagccct cgctcctcgc ccgtccaggc ggcaaagagt attgttcgct gtgggcgggg
     2221 accagaagaa aataggcgcg cgtcctcgag cattgcggca agcccgagcg cgtcatcgga
     2281 agcgcccgcc cggattgtcc ttccctgggc atcagccggg ccgatgccat aggcatccca
     2341 gtgcgcacca tagctgatcg tctcgtccgg atatcttgaa ccggtgagct tgcccaagac
     2401 gttatggctg gtgatccgcg ttaccgtcac gggaatgctc gcggagaaac gcgccttgag
     2461 atcgatcggg cggaaagagg ttgtccgcgc ttcgcgcttc acggcctgat agtcatagcc
     2521 agcgcgcttc aagagcgctt cggcaacgct ttgctggatc cagccctgca gaagtactgg
     2581 ctgctgcgcg ccttttggaa gcacgatatt gtaagactcg cccgcggggc tcttgacgac
     2641 attccaggga tagccggcgg cgtcggtctg atggacgacg agagcggcaa tcgcgccgcg
     2701 cctcgcggcc tcctcatatt tgtacgtcca gcggccataa taagtcatag tctttccgcc
     2761 aaacttgccg gcgaccggtt cacccggtgc ggcttcaaag tcggggtcat tgacgagcat
     2821 gaccgcgacc ttgccgtgaa ggtccacgcc cttgaaatcg tcccagccgc gttccggtgc
     2881 ggtgacgcca tagccgacga acaccatcgg cgcgttcact attcgaacgt cgtcgaccgg
     2941 ccgcaccgtt cccagatata tgtcgtcggg aaagcgtagc gggacgctct gcccggactg
     3001 cgtaacggag acgtttacgg gacttcgcac ctgcgtgtgg atcatcggga cttcctcagt
     3061 ccacccgcca ttttcgcccg cgggcgaaag tccggccgcc ttgaattgct cgatgaggta
     3121 ggggattgtc ttgtcctcgc ctctggtacc cggggcacga ccctcgaacg catcggaagc
     3181 gagcgtgcgg gtaatcgcgg acatccgctc ggtgctgacc tgcggcggcg ttgcgccaat
     3241 cgccaatgta agaagcaagg tggcgaaggg cttcatgctc attggtacgc tccttagg
//
LOCUS       DASRBJ010000337         7277 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_649754,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000337 DASRBJ010000000
VERSION     DASRBJ010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7277
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_649754"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..428
                     /locus_tag="VE968_09290"
     CDS             <1..428
                     /locus_tag="VE968_09290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52053.1"
                     /translation="RLNELDVLNYWQSNKVDGEKIGAFVRIAPGNTTHVQQAIQLFGG
                     VYLGFQVQENCQEEFNAGQPWTPGPLTNDGHAVYAVGYDEEGVNVLTWGATQKATWAW
                     WAECVDEAYAILSAEALDTGFAPGFNSAALADALKAVAD"
     gene            complement(531..881)
                     /locus_tag="VE968_09295"
     CDS             complement(531..881)
                     /locus_tag="VE968_09295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3768 domain-containing protein"
                     /protein_id="HZU52054.1"
                     /translation="MRDDILAVETARHRIAQLNDALRINRIGGRILVSRGVDSLVQGN
                     FSSLFEALATFDAFDPDNDPHGEHDFGLFEFLGVKLMWKIDYYDLELRVGSNDPSDPA
                     VTTRVLTVFLAEEY"
     gene            1207..3366
                     /locus_tag="VE968_09300"
     CDS             1207..3366
                     /locus_tag="VE968_09300"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HZU52055.1"
                     /translation="MRVNDKEARQRMTRCAGALIASTVLFAAAPPAAIAESNGSFTME
                     QVLSYPFVPEIDAAEKGDAIAFVRVLKGVRNVWVAKGPDFIPRQLTHYTPDDGQEITQ
                     LTFSPDGNHLVYVRGGDHDANWELKLQPDPDSSPVEPKVTIWAAELSGGAPIKIAEGD
                     APAISSRGELAYVKDKQVWTTPLSGKGKAKRLFFDRGEDSKLTWSPDGGKLAFVSNRD
                     GDHSFVGVYDLKSDNLTYLAPSTNFDSYPVWSPDGTRIAFARRPGKGGAPKPLLKQTP
                     NPFSIWVADVATGRANRVWQSPNTLRGSFPQTAGEVNLHWAAGDRLVFLADLDNWPHL
                     YSISAAGGEPLLLTPGNFMVEHVAMSRDGRYMIYDANTGTTRDDGDRRHLFRVPVDAA
                     QPLALTGGPTLEWSPVVASPKEIAFIRADAKAPPSIGAVAINGGGLRDLGGGTVPAEF
                     PQASFLVPRSVTFTSADGWTIHGQLFDNGVSTKKPGIIFVHGGPPRQMLLGWHYMDYY
                     SNSYAVNQYLANHGYVVLSVNYRLGIGYGHDFHHPDHAGAAGAAEYQDVVAGAKFLQA
                     RSDVDPGKIGIWGGSYGGYLTAMALARNSDIFKAGVDMHGVHDWSSFLGTRLGKQPER
                     YEEGDIKEAMKVAFESSPVATMSNWRSPVLLIQGDDDRNVNFNQTIDLARRLEAEHLP
                     FQELVIPNEIHGFLRWHSWMNADSATADYFARTLPTP"
     gene            complement(3476..5470)
                     /locus_tag="VE968_09305"
     CDS             complement(3476..5470)
                     /locus_tag="VE968_09305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU52056.1"
                     /translation="MTLDVSEQALIFAPNGRDAQVASSMLAETGIDSRICPDIASLIG
                     CLEEGAGFALITEEAIRNADLRALRDWIVAQPEWSDFPFVLLTLRGGGLERNPSAGRY
                     LAMLGNVTFLERPFHPTTLISLAQAALRGRRRQYDARARLLDLQASEERYRQIVEGAE
                     DFAIVSLDEEGKVTSWNSGAARITGYSVQEAVGRAGDFFFTPEDIAAGEPLKELARAR
                     ENGRALNERWHRRKDESRFWGSGLCMSLDAGGFLKIFRDATVEHEHFAAIGELNETLE
                     ARVAARTVELMQAQEALRQSQKMEALGQLTGGVAHDFNNLLTPIVGSLDLLQRRGTGD
                     ARERRMIAGALLSAERAKTLVQRLLAFARRQPLRPTGVDLAQLVEGMAELITRTSGPH
                     VSLEIDIEPGLPPVQTDPNQLEMAILNLAVNARDAMEKGGTLTIAARVDEVDNGHSEL
                     QPGRYVRVSVKDTGVGMDEETLARAVEPFFSTKGIGKGTGLGLSMVHGLVAQLGGTIS
                     ISSEVNVGTTVELWLPIADSTMDLAGTKSSNLLPEFSGTALVVDDEELVRISTVDMLS
                     ELGYRVVDASSAEEALRLLGNGFRPNLLITDHLMPGMTGTELAHEVRKLDPDLAVLLV
                     SGFAEVEEIAPDLPRLTKPFRQQELAKSLAALRPTTSVDH"
     gene            complement(5467..6954)
                     /locus_tag="VE968_09310"
     CDS             complement(5467..6954)
                     /locus_tag="VE968_09310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013053675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HZU52057.1"
                     /translation="MAKTESVAPIGIEGLDDILAGGLARGRVFLLEGSPGTGKTTIAM
                     QFLLAGAAAGERGLYITLSETEDELRATAESHGWALDGVDVYELVPPESLLDEEQQQS
                     LLYSSDLELGETTKRIFEAFERVRPDRVVLDSLSEIRLLAQSSLRYRRQILALKHYFA
                     RQNTTVLMLDDLTTELNDKTVHSVAHGVIALEEIQREYGAERRRLRVVKYRGRRFRGG
                     FHDFIIETGGVHVFPRLVSSGHRKRFGREPLPSESAELNALLGGGVERGSSVLILGPA
                     GTGKSLLTLMFALGAIERGERAAMFVFDEELGLLIDRAKGLGIDLQELIDRGQLSLQQ
                     VDAAEMAPGEFSERVRRSVEEFSARTVIIDSLNGYQAAMPEENALILHMHELLQFLNR
                     QGATTFLTVAQHGLVGDMKAPVDVTYLADTVILLRYFEARGRVRRAISIVKKRTSAHE
                     DTIREYQIGTHGISLGRPLVDFQGVLRGIPTLVSGDPVLLGEEEL"
     gene            complement(7084..>7277)
                     /locus_tag="VE968_09315"
     CDS             complement(7084..>7277)
                     /locus_tag="VE968_09315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HZU52058.1"
                     /translation="RWSLAHGVLRFHWEESGGPRVTPPTKKGFGSRLLERLLVRDLSG
                     NIELNYDPDGLQFSIAAAL"
BASE COUNT         1473 a         2215 c         2179 g         1410 t
ORIGIN      
        1 gtcgcctcaa tgaactcgac gtcctcaatt attggcagag caacaaggtc gacggcgaaa
       61 aaataggggc attcgtgcgc atcgccccgg gtaacacgac gcacgttcag caggcgatcc
      121 agctatttgg cggcgtctac cttggattcc aggtgcagga gaattgccag gaggagttca
      181 atgccggcca gccgtggact ccaggtccgc tcaccaacga cggccacgcg gtctacgccg
      241 tcggctatga cgaagaagga gtaaacgtct tgacgtgggg cgctacccag aaggcgacct
      301 gggcctggtg ggcggagtgc gtcgatgaag cctatgcgat cctctcggct gaagcgctgg
      361 acacgggttt tgcaccaggc ttcaactcag cagcgcttgc cgatgcgctc aaggccgttg
      421 cggattgagg gcgccacaaa cacgcgcagc gaatggcggc aacatagctc gcattcatca
      481 gcgagttcag catgacgaat tatcggtcgc tatgacgcgc ccaaactggt tcaatactcc
      541 tcagcgagga agaccgtcag tactcgggtg gtgaccgccg ggtctgatgg atcgtttgag
      601 ccgacgcgaa gctcgagatc gtaatagtcg attttccaca tgagcttgac cccaaggaac
      661 tcgaacaggc cgaagtcgtg ctcgccatga gggtcgttgt ccggatcgaa agcgtcgaag
      721 gttgcaaggg cctcaaacaa gctcgagaaa ttaccttgaa cgagtgaatc gaccccgcga
      781 ctgacgagaa tccgaccgcc aatgcggttg atgcggagcg catcattcag ctgggcaatt
      841 cggtgtcgag cagtttcaac ggcaagaatg tcatctctca cgtcaacctc ggcgcgcgcg
      901 gactggggta tcggatcggc tcgacatcga gttgctcaat tcatcgcgat cgtaacctcc
      961 gccgcaaccg caccgaagcg aacgccggcg aacctccatt ctaatgaaat ggcacagact
     1021 gtgcgctggc tgaaaagcgc gtcgaccatc atttctggaa agcggcggcg ccacgtcggc
     1081 aggaatgaaa tcgaaagctt tgttccttcg atttagaccc attgcccact cggcattcgt
     1141 cggacacaaa cagccgcgcc gaacatatct cgtgctgggc tgaaaaggag gggtttagtg
     1201 ttccagatgc gcgtaaacga caaagaggca agacaaagaa tgacgcgatg cgccggtgcg
     1261 ctgatcgcct cgacggtcct gtttgcagca gcgccgccag ctgcgatcgc ggaaagcaac
     1321 ggcagcttca ccatggaaca ggttctttcc tatccttttg taccggagat tgacgcggcc
     1381 gagaaaggcg acgcgatcgc gttcgtccgg gttctgaaag gcgttcgcaa cgtctgggta
     1441 gccaaagggc cggatttcat cccgcggcaa ctaacgcact atacgccgga cgacggccag
     1501 gaaatcaccc aactcacctt ttcgccggac ggcaaccacc tggtgtacgt gcgcggcggc
     1561 gaccacgatg cgaactggga gctgaagctt cagcctgacc ccgattcatc accggtagaa
     1621 cccaaggtca ccatttgggc tgccgagcta tccggcggcg caccgatcaa aatcgctgaa
     1681 ggtgatgctc cggcgatctc gtcacgcggc gagcttgcct atgtgaaaga caagcaggtc
     1741 tggacgacgc cgctcagcgg caagggaaag gcgaagcgcc tgtttttcga tcgcggcgag
     1801 gatagcaagc tcacctggtc tcccgacggt ggaaagctcg ccttcgtttc gaaccgcgac
     1861 ggcgaccata gtttcgtcgg agtctatgat ctcaagagcg acaatctgac ctacctcgct
     1921 ccctcgacca atttcgacag ctatcccgtc tggtcacccg acggaacgcg tatcgctttc
     1981 gcacgccgac ccggcaaagg gggcgcacca aaaccgctcc ttaagcaaac acccaatcca
     2041 ttctcgatct gggtcgccga tgttgcaact gggcgcgcga accgcgtttg gcaaagcccg
     2101 aacactcttc gcggatcgtt cccgcagacc gcgggagaag tgaacctcca ctgggccgcg
     2161 ggtgaccggc tcgtatttct cgccgatctc gacaactggc cgcatctcta ttcgatttcg
     2221 gccgcgggcg gagagccact gctactgacg cccggcaact tcatggtcga gcatgtcgca
     2281 atgagccgcg atggccgata catgatttac gacgcgaaca ccggcacgac gcgcgacgat
     2341 ggagatcggc gccatctctt ccgcgttccg gttgatgccg cgcagcccct cgcacttacg
     2401 ggagggccga cgctcgaatg gtcgccggtg gtcgcgagcc caaaggaaat tgccttcatc
     2461 agggcggacg ccaaggcgcc accttccatt ggtgcggtcg ccattaacgg cggtggtctt
     2521 cgcgatctcg gcggtggaac ggtaccggct gaattcccgc aagcttcgtt cctcgttccg
     2581 cgttccgtga cattcacgtc ggccgatggc tggacaattc acggacagct tttcgacaac
     2641 ggagtcagca cgaaaaagcc cggcatcatt ttcgtccatg gcgggccacc gcgccagatg
     2701 ctcctcggct ggcactacat ggattattac agcaacagct atgccgtgaa ccagtacctc
     2761 gccaatcacg ggtatgtggt actttcggtg aattaccgtc tcgggattgg ctatggccat
     2821 gacttccatc accccgacca cgccggtgcc gcgggagcag ccgaatacca ggacgtcgtc
     2881 gcgggcgcga aattccttca ggcaaggagc gacgtcgacc caggaaaaat cggcatctgg
     2941 ggcggatcct atggcggcta tttgaccgcg atggcgctcg cccgcaattc cgacatcttc
     3001 aaggcgggcg tcgacatgca tggcgttcac gattggtcga gttttcttgg aacgcgattg
     3061 ggcaagcagc ccgaacgtta tgaggaaggc gacatcaagg aagcgatgaa ggtcgctttc
     3121 gagtcttcac ccgtcgcaac gatgagcaac tggcgatcgc cggtgctcct tatccagggc
     3181 gacgatgatc ggaacgtcaa cttcaatcag acgatcgatc tggcgcggcg cctcgaagcc
     3241 gagcatctcc ccttccagga acttgtgatc cccaatgaga ttcacgggtt cctaagatgg
     3301 cattcgtgga tgaacgcgga ctcggcgacg gccgactatt tcgctcgaac gctgcccacg
     3361 ccctgatcgc ggactgggga tctcagcagg ctttggcaag tcgctgaggt ccgagtcacc
     3421 tggcgtggct tgcgcgtgga gaacgcgaag cgatcggcac tggtcgtgca gcgcctcagt
     3481 gatccaccga tgtggtcggc cgtaaggccg cgaggctctt ggcaagttcc tgctggcgga
     3541 atggcttggt caaccgggga aggtccggag cgatttcctc aacttcggca aaccccgaca
     3601 cgagtagaac cgcgagatcg gggtcaagct ttcgaacttc gtgcgcgagc tccgtgccgg
     3661 tcatgccggg catcagatga tcggtgatga ggaggttggg tcgaaagccg ttcccaagta
     3721 gccgcagcgc ttcttccgcg gagcttgcgt caacgacgcg gtatccaagt tccgaaagca
     3781 tgtcgacggt gctgattcgg accaattcct cgtcgtcgac gacgagcgcc gttccggaga
     3841 attccggaag gagattggac gacttcgttc ccgcaaggtc catcgtactg tcggcgatcg
     3901 gcaaccatag ctcaacggtt gttccgacat ttacctcgct cgagatcgag attgttccac
     3961 caagttgcgc aacgagcccg tgaaccatgc tgagcccgag gcccgtgcct ttgccaatgc
     4021 ccttggttga aaagaagggc tcgacggcac gcgcaagtgt ctcctcgtcc atgccgacgc
     4081 ccgtatcctt gaccgagacg cggacgtagc ggcccggctg tagttctgag tggccattgt
     4141 cgacctcgtc gactcttgcg gcgatcgtca gtgtcccacc cttttccatt gcatcgcgcg
     4201 cattcacggc aaggttgagt atcgccatct ccaattggtt tgggtccgtc tggaccggcg
     4261 ggaggcccgg ttcgatgtcg atttcgagtg atacgtgtgg cccggatgtt cgggtaatga
     4321 gctcggccat tccctcgacg agttgcgcaa ggtcgacgcc cgttggccgc agtggctgcc
     4381 gcctcgcgaa cgcaagcagc ctctgcacga gcgtcttggc gcgctcggcc gagagcagcg
     4441 ctcccgcgat catccgtctt tcgcgcgcat cgccggttcc ccgccgctgg aggaggtcga
     4501 ggctgccgac aatcggggtc agtaggttgt tgaagtcatg agcaacgccg cccgtcagtt
     4561 gacccagtgc ctccatcttc tggctttgcc gaagggcttc ctgcgcctgc atcagttcga
     4621 ccgttcgcgc ggcgacgcgc gcttcgagcg tctcattgag ctcgccgatt gcagcgaaat
     4681 gctcatgttc gacggtcgcg tcacgaaata tcttgagaaa tccgccggca tcgaggctca
     4741 tgcagagacc ggagccccag aaacggctct cgtccttccg tcgatgccag cgctcattga
     4801 gcgctcgccc gttttcccga gcccgcgcaa gttccttgag cggctcgccc gcggcgatgt
     4861 cttcgggcgt gaaaaagaag tcacccgcgc ggccaaccgc ctcctgcacg gaatagccgg
     4921 ttatccgcgc cgcaccactg ttccagctcg ttaccttgcc ttcttcgtcg agcgagacga
     4981 tcgcgaaatc ctcggcgccc tcgacgatct gccgataacg ctcctcgctc gcctggaggt
     5041 caagcagccg tgcgcgcgca tcatattgcc gtcggcgtcc gcgtagcgcg gcttgtgcaa
     5101 ggcttatgag cgtcgtcgga tgaaacggcc gctcaaggaa ggtgacgttc ccgagcattg
     5161 cgagatagcg gccggctgaa gggtttcgct ctaggcctcc accccgcaat gtcagaagca
     5221 cgaatggaaa atcggaccac tccggctgcg cgacgatcca gtcgcgaagc gcgcgcagat
     5281 cggcgttgcg gatcgcctct tcggtaatga gcgcgaaccc cgcgccctct tcgaggcacc
     5341 cgatcagtga tgcgatatcc ggacagatac gactgtcgat ccccgtctcg gcgagcatgg
     5401 aggacgcgac ctgcgcatcc ctgccgttgg gggcgaaaat cagcgcctgc tcggaaacgt
     5461 caagcgtcaa agctcctctt ctccgagtag gaccggatcg cccgatacga gcgtcgggat
     5521 gccccggagc actccctgga agtcaaccag cggccttcca aggctgatcc catgcgttcc
     5581 gatctggtat tcccggatcg tgtcctcgtg cgcgctcgtg cgtttcttga cgatcgagat
     5641 tgcgcgacgg acgcggccac gtgcctcgaa ataacgcagc aggatgactg tgtcggcaag
     5701 ataggtcacg tcgacgggag ccttcatgtc gccaaccaat ccgtgctgcg cgaccgtcaa
     5761 gaacgtcgtt gcgccctggc ggttcagaaa ttgcagcagc tcgtgcatgt ggaggatgag
     5821 tgcattttcc tccggcatcg ccgcctggta gccgttgaga ctgtcgatga tcaccgtccg
     5881 cgcggaaaat tcttcgaccg agcggcgcac gcgctccgag aactcgcccg gcgccatttc
     5941 agccgcatcc acctgctgca gcgagagctg ccctcgatca atcaattcct ggagatcgat
     6001 tccaagacct ttggcgcggt caatgagaag accgagctcc tcgtcgaaca cgaacatggc
     6061 ggcgcgttcg ccgcgctcga tcgctccgag tgcgaacatc agggttagca gcgattttcc
     6121 ggttccggcg ggacccagga tgagcacgct cgatccccgt tcaacgcctc ctcctaaaag
     6181 tgcgttcagc tcggcggatt cgcttggcag tggttcgcgg ccgaagcgct tgcgatgtcc
     6241 cgacgagaca agccggggga acacgtgaac gccaccggtt tcgatgatga aatcatggaa
     6301 gccgccgcga aacctgcgcc cgcgatattt gaccacgcgc aagcggcgcc gctcggcacc
     6361 atattcgcgc tggatttcct caagagcgat gacgccatgg gcgacgctgt gaacggtctt
     6421 gtcattgagc tcggtcgtaa ggtcatcaag catcaggacc gtggtgttct ggcgagcgaa
     6481 ataatgcttc agcgcaagga tctgccgccg ataacgaagt gagctttgcg caagcaggcg
     6541 aatctccgac aaactgtcga gaacgacgcg atcagggcgg acgcgttcaa atgcttcgaa
     6601 gatccgcttc gtcgtttcgc caagctcgag gtcggacgag tagaggaggc tttgctgctg
     6661 ttcttcgtcg agcaggcttt cgggaggaac gagttcgtac acgtcgaccc cgtcgagcgc
     6721 ccagccatgc gattcggcgg ttgctcgtag ttcgtcctcg gtttcggaga gcgtgatata
     6781 gagcccgcgc tcgccggcgg ccgcgccggc aagaagaaat tgcatcgcaa tggtggtctt
     6841 gccggttccg ggactccctt cgagcaggaa cacgcggccg cgcgcgaggc cgccagcgag
     6901 tatgtcgtcg agcccctcaa tcccaatagg cgctaccgat tccgtcttcg ccacgttgcg
     6961 ctccgctgcc gctaagttgc cgggaaaggg gcgcaacagc ggcaaattcg gcgcccggat
     7021 gctcgttggc ttatgaccaa gtcaggagaa cagcaatgcc cgcctcaacc cacaaagaga
     7081 ggcttagagg gccgcagcaa tgctgaactg aagcccatcg gggtcgtaat tgagctcgat
     7141 gtttccacta aggtcgcgaa cgaggaggcg ttcgagcaat cggcttccga agcccttctt
     7201 cgtcggcggc gtaacccttg gaccgccgct ttcctcccag tggaagcgaa ggacgccatg
     7261 ggcaagcgac caacgaa
//
LOCUS       DASRBJ010000338         2619 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_249788,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000338 DASRBJ010000000
VERSION     DASRBJ010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2619
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249788"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(109..1200)
                     /gene="hppD"
                     /locus_tag="VE968_09320"
     CDS             complement(109..1200)
                     /gene="hppD"
                     /locus_tag="VE968_09320"
                     /EC_number="1.13.11.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003868 - 4-hydroxyphenylpyruvate
                     dioxygenase activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HZU52059.1"
                     /translation="MATQVADQTSILGLENPMGTDGFEFVEYTAPDIELLRSLFTKMG
                     FPEVARHKSKNVTLHKQADCNFIINAEPGSYAEQYAKDHGPSACAMAFRVKDAKAAHE
                     RALSLGATNVEVKKGAGELDIPAIEGIGGSRLFFVDRYGSNGSIYEVDFNFHPDWRER
                     MAEADSKLTYIDHLTHNVNRGRMAVWADFYERLFNFREIRYFDIEGKQTGLFSKAMTS
                     PCGKIRIPLNESQDDKSQIEEFLREYKGEGIQHIALGTSNIYEAVDIIRARGIPFQDT
                     PDTYYELLPERIKGHQESIPELEKRRILMDGAPTEGQGLLLQIFTQNVIGPIFFEIIQ
                     RKGNEGFGEGNFKALFESIELDQMRRGVL"
     gene            1385..1642
                     /locus_tag="VE968_09325"
     CDS             1385..1642
                     /locus_tag="VE968_09325"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HZU52060.1"
                     /translation="MDIPDGWTMEHDGKAMVRTLKFKDFSEAFGFLTRVALYAEKQDH
                     HPEFTNVWNRVDFRLTSHDAGGVTDRDIELAGAINRLLSAG"
     gene            complement(1657..1896)
                     /locus_tag="VE968_09330"
     CDS             complement(1657..1896)
                     /locus_tag="VE968_09330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52061.1"
                     /translation="MVVNAAVSGSRHRTPAKPLERQHFTSAADARTDMIAPGSKGPGE
                     GSMFDQTLGGSLRNLAIGLVLTVGVVGAAFALAFY"
     gene            1984..2142
                     /locus_tag="VE968_09335"
     CDS             1984..2142
                     /locus_tag="VE968_09335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HZU52062.1"
                     /translation="MRGLTKLLRCEKGATAIEYALVATLISIAAIGAFNNLGNKINTM
                     YNNVGNAM"
     gene            2376..>2619
                     /locus_tag="VE968_09340"
     CDS             2376..>2619
                     /locus_tag="VE968_09340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52063.1"
                     /translation="MFGKIEDLAPPPSSGRFPSPPPAAAGRNWEAYVVPQNWDSFSED
                     DHAVWDLLFARQVELLGTRVVSAFLDGIDLLKLSHPG"
BASE COUNT          500 a          796 c          799 g          524 t
ORIGIN      
        1 tcagcgcctt gatcggaatt gcggcaagat cgtcggcccg gacatgcgcc agcgctccgc
       61 cgtagcggcc gatcggcgtg cggacatagt cgcaaatgta ggcttcggtc agaggacgcc
      121 cctgcgcatc tgatcgagct cgatgctctc gaacaatgcc ttgaaattgc cctcgccgaa
      181 gccttcgttg cccttgcgct ggatgatctc gaagaagatc gggccgataa cgttctgggt
      241 gaagatctgc agcagcaggc cctggccctc ggtcggcgcg ccgtccatca ggatccgccg
      301 cttctcgagc tcgggaatgc tctcctggtg gcctttgatg cgctcgggaa gcagctcgta
      361 ataggtatcg ggcgtgtcct ggaacggaat gccgcgtgct ctgatgatgt ccaccgcctc
      421 gtaaatgttc gaggtgccga gcgcgatgtg ctggatgccc tcgcccttat actcgcggag
      481 gaactcctcg atctggcttt tgtcgtcctg gctctcgttc agcgggattc gaatcttgcc
      541 gcagggcgaa gtcatcgcct tggagaagag gccggtctgc ttcccttcga tgtcgaagta
      601 acgaatctct cggaagttga agagccgctc gtagaaatcc gcccagaccg ccatccggcc
      661 acggttcacg ttgtgcgtca gatggtcgat ataggtgagc ttcgaatccg cctcggccat
      721 ccgctcccgc cagtcgggat ggaagttgaa gtcgacctcg tagatcgagc cgttgctgcc
      781 gtagcggtcg acgaagaaca gccgcgatcc gccgatgccc tcgatagccg ggatgtcgag
      841 ctctccggca ccctttttca cctcgacatt ggttgcgccg aggctcaggg cgcgctcgtg
      901 cgcggctttc gcgtccttga cgcggaaagc catggcgcag gcgctcgggc cgtggtcctt
      961 cgcatattgc tcggcatacg aaccaggctc ggcgttgatg atgaaattgc agtcggcctg
     1021 cttgtgcagc gtgacgttct tgctcttgtg gcgagcgacc tcggggaagc ccattttggt
     1081 gaacagcgag cgcagcagct caatgtcggg cgcggtatat tcgacgaact cgaacccgtc
     1141 ggtacccatc gggttttcga gccctagaat gctggtctgg tcggcgactt gcgtagccat
     1201 ggaaatctcc ttcgcggccc aactgcgccc gcatcgccgc tatttcaagg ctaccgaagt
     1261 ggaaggcgaa cgggtgaaaa cgggggtcct tccacttctt ccacttcgta ggatttggac
     1321 ccctttcccc gatgcaagaa ttggccataa gcgcgacgac cgcctgtagg acaggagaat
     1381 cgccatggac attccggacg gctggacgat ggagcacgac ggcaaagcga tggtccgcac
     1441 cctgaagttc aaggatttca gcgaggcgtt cggtttcctg acccgcgtcg cactttacgc
     1501 cgagaagcag gatcaccatc ccgaattcac caacgtgtgg aatcgggtcg acttccggct
     1561 gaccagccat gatgccggcg gagtcaccga tcgcgacatc gagctcgcag gagcgatcaa
     1621 ccgcctgctt tcagccggct gatggccgaa cagtcgtcag tagaaagcga gcgcgaacgc
     1681 cgcgccgacg acccccaccg tcagcaccaa tccaatagca agattacgga ggcttccccc
     1741 aagcgtctgg tcgaacatcg aaccctcccc tggtcctttc gatccagggg cgatcatatc
     1801 cgtccgcgca tcggctgccg aggtgaaatg ctggcgctcc agtggcttag ccggcgtgcg
     1861 atggcgggaa cctgagaccg ccgcgttaac caccattcga agtgatttgg caggcgtggc
     1921 gagaggacaa gcgctcaagc gccggcggaa agggcgcgat ccttgtttac caaggagtgg
     1981 ggtatgcgtg gactgacgaa gctccttcgc tgcgagaagg gcgccaccgc gatcgaatat
     2041 gcgctggtcg cgacgttgat ctcgattgcc gcgatcggcg cgttcaacaa tctcggcaac
     2101 aagatcaaca cgatgtacaa caacgtcgga aacgcgatgt gacgcatcct tttcgggcca
     2161 ttgatcgttc agtccggaca tggaataagc cgctcacgat gaagaaactg ctcgcccttg
     2221 ctgcattgac ccgcgccgct gcggccgcgc cggcgagcta ttattacccg aaggaggctg
     2281 gaacgagctg acgcgcgcct aagcgacagt tcgacagcct ccaacccgcc agcgccagct
     2341 cggcgggttt tttgttgccc agggaaggac cacagatgtt tggcaagatt gaagacttgg
     2401 cccctccacc gtcctcggga cggttcccct ccccaccgcc tgcggcggca gggaggaatt
     2461 gggaggccta tgtcgtcccc cagaactggg attcgttcag cgaggacgac catgccgtct
     2521 gggacctgct gtttgcgcgg caggtcgagc tgctcggcac gcgggtagtc tccgctttcc
     2581 tcgacggaat cgacctcttg aagctgtcgc acccgggag
//
LOCUS       DASRBJ010000339         8704 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_449362,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000339 DASRBJ010000000
VERSION     DASRBJ010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8704
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449362"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2746
                     /gene="uvrA"
                     /locus_tag="VE968_09345"
     CDS             <1..2746
                     /gene="uvrA"
                     /locus_tag="VE968_09345"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HZU52064.1"
                     /translation="SRNPRSTVATVTEIYDYMRLLWARVGISYSPATGEPISAQTVSQ
                     MVDRTMALPEGSRHYLLAPVVRGRKGEYRKELAEWQKAGFTRVRIDGVFYAIEDAPAL
                     DKKYKHDIEVVVDRIVVREGIEARLADSFETALKLADGLAYLDPADPAREQPGAERTG
                     ASAALQRAAERNVLATNAPEGRITFSEKFACPVSGFTIAEIEPRLFSFNAPQGACPAC
                     DGLGEKLVFDEDLVVPNHALSIKKGAVVPWAKSNPPSPYYMQVLASLARAYDFDLDTP
                     WTDLPEEARNVILHGTGGKPVTLRFIDGKRSYEVKKPFEGVIGNLNRRMLQTESAWMR
                     EELARYQASRPCEVCHGARLKPEALSVKIAGEDISMSTRRSVADAHAWFGALAEKLTP
                     TQREIARAILKEINERLGFLHNVGLDYLHLDRTSGTLSGGESQRIRLASQIGSGLSGV
                     LYVLDEPSIGLHQKDNDRLLETLKRLRGLGNTVLVVEHDEDAIRSADQVIDMGPGAGV
                     HGGEVIYSGDLEGLLSCEGSLTADYLSGRREIPLPTKRRRGNGKTLVVQGATANNLQN
                     VTAVFPLGTFTCVTGVSGSGKSSLTIDTLYAGAARALNGARIPCGPCQKISGLEHLDK
                     VIDIDQSPIGRTPRSNPATYTGAFTQIRDWFAGLPEAQARGYKPGRFSFNVKGGRCEA
                     CQGDGLIKIEMHFLPDVYVTCDVCHGARYNRETLEVRFKGKSIADVLDMTVEDAADFF
                     KAVPAIRDKMEMLKEVGLGYVKVGQPATTLSGGEAQRVKLAKELSRRATGKTLYILDE
                     PTTGLHFEDVRKLLEVLHRLADQGNTVVVIEHNLDVIKTADWVLDLGPGGGVNGGRII
                     AEGPPEEIVKSAQSSTGHYLKPLLDRASVKPVVVSAEPKRPKRIRRLVTDGQDLIAAK
                     "
     gene            complement(2994..3197)
                     /locus_tag="VE968_09350"
     CDS             complement(2994..3197)
                     /locus_tag="VE968_09350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52065.1"
                     /translation="MNDKPIVYDDPSVVRAIDGCVHMEGPDDVDVLLSPDAAEETSDR
                     LLAESLNARGQRRLQRYPHQPKK"
     gene            complement(3621..4253)
                     /locus_tag="VE968_09355"
     CDS             complement(3621..4253)
                     /locus_tag="VE968_09355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52066.1"
                     /translation="MLKFVIGPILVGGGWAAGSYYGADAEQLVHKSPAQSYAAIEQAL
                     GSMKTSGMTSFEGGTPEQYEIKVDRTLDEKLIVTLFFNGRQGAEAQMDFVPEDGGKST
                     VIKAHIHADRSVLRTALAGTDKARLAYAPDWMLNLSFKPLLQQVAAQIEQGQAARIDG
                     LSEADAEAQWEANLTEEQRDDVARWRQSEATQPAVDPDAAARNYMGPPSN"
     gene            complement(4288..6165)
                     /locus_tag="VE968_09360"
     CDS             complement(4288..6165)
                     /locus_tag="VE968_09360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl/propionyl/methylcrotonyl-CoA carboxylase
                     subunit alpha"
                     /protein_id="HZU52067.1"
                     /translation="MIKSLLIANRGEIACRVIRTARRLGIRTIAVHSDADARALHVKM
                     ADEAVHIGPSPVRDSYLRGEVIIDAAKRTSAEAIHPGYGFLSENAEFAQAVIDAGLIW
                     VGPKPESIRAMGLKDAAKKLMAEAGVPVTPGYLGDDQDPARLKAESAVIGYPVLIKAV
                     AGGGGKGMRRVDAPEQFADALDSAKREAANAFGDDRVLIEKYVQSPRHIEVQVFGDRL
                     GNVVHLFERDCSLQRRHQKVIEEAPAPGMDPRTREAVCAAAVRAAKAVNYEGAGTVEF
                     IADASQGLSADRIWFMEMNTRLQVEHPVTEEISGQDLVEWQLRVASGEPLPKRQDELR
                     IAGHAIEARLYAEDPAKGFLPSVGKLEHFDLGNEGRIETGVEEGDAISPFYDPMIAKL
                     VSRGRDREEAIGELASMLNGVEVWPVRTNASFLYRAVRHPEFGLGAVDTGFIERHLSN
                     LVDDGEPGEDVWRGAATVALASEDDDEPFSVLQGFRLNALPDLGLTLHRGGSVRKVLL
                     GDGDVAELSGFREDERLIVFTQGQSFEFALMSRGTGASHGIHDGEIEAPMPGKVTAVE
                     VSAGDKVSKGQRLLTLEAMKMEHALTAPFDGTVVEVGAVAGAQVTEGQMLAKVAAQSD
                     V"
     gene            complement(6341..7321)
                     /gene="bioB"
                     /locus_tag="VE968_09365"
     CDS             complement(6341..7321)
                     /gene="bioB"
                     /locus_tag="VE968_09365"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004076 - biotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HZU52068.1"
                     /translation="MRNDWTRDEIAGLFNLPFTELIFQAAEIHRQNHSPVGVQLCTLL
                     SIKTGGCPEDCGYCSQSAHAQTGLKAEKLMDIDAVISAARKAKEDGSQRFCMGAAWRS
                     PKDRDIPSLARMIREVKALGLETCMTLGMLSREQAVALKSAGLDYYNHNIDTAPEHYG
                     AIITTRTFEDRLDTLEEVRNAGIAVCCGGIVGMGESRADRVGFIHALATLPRHPESVP
                     INALVPIKGTALGDMLHGVKMIDDIEFVRTVAVARITMPKSMVRLSAGREAMAEATQA
                     LCFLAGANSIFTGDKLLTAANAGDDKDAALFAKLGLVPLEAEEPMRVEAA"
     gene            complement(7329..>8704)
                     /locus_tag="VE968_09370"
     CDS             complement(7329..>8704)
                     /locus_tag="VE968_09370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HZU52069.1"
                     /translation="QLAACDMYDGEVPGAGIIAGVGKVSGRQVLIVSNDATVKGGTYY
                     PMTVKKHLRAQEIAEQNRLPCIYLVDSGGANLPHQADVFPDRDHFGRIFFNQAQMSAK
                     GIAQIACVMGSCTAGGAYVPAMSDESVIVRNQGTIFLGGPPLVKAATGEEISAEELGG
                     GDLHAKKSGVVDHLAENDDHALAIVRDIVSTLQPEAGAGIELREPRPPAFDADELYGI
                     IPKDVRAPYDVHEVIARIVDASEFHEFKPQYGGTLVCGFAHIWGIPVAILANNGVLFS
                     ESAVKGAHFIELACQRRTPLLFLQNISGFMVGGKYEAEGIAKHGAKLVTAVATASVPK
                     ITVLIGGSFGAGNYGMSGRAYSPRFLFTWPNSRISVMGGEQAASVLATVHRNADKWTP
                     AEAEDFKAPIRQLYEEEGNPWHATARLWDDGIIDPVQTRDVLGLAFAATLNAPIAEHP
                     QFGVFRM"
BASE COUNT         1723 a         2680 c         2534 g         1767 t
ORIGIN      
        1 gagccgcaat ccgcgctcaa cggtcgcgac ggttacggaa atatacgatt atatgcgcct
       61 cctttgggcg cgtgtcggaa tttcctattc accggcgacc ggcgagccaa tttcggccca
      121 gactgtcagc cagatggtcg atcggacaat ggctcttccc gaaggcagcc gacattatct
      181 tctcgctccg gtggtccgag gtcgcaaagg cgagtatcgc aaggaactcg ccgaatggca
      241 gaaagcggga tttacccgcg ttcggatcga tggcgtattt tacgcgatcg aagatgctcc
      301 ggcactcgac aaaaagtaca agcatgacat cgaggtagtc gtcgaccgga tcgtggttcg
      361 cgagggaatc gaagcacggc tcgcggacag cttcgagacg gcgctgaaac tcgctgacgg
      421 gctcgcctat ctcgacccag cagatccggc ccgcgaacag cctggagcgg aacgcaccgg
      481 tgcttcagcc gccttgcaaa gggcggcgga acgaaacgtg ctcgcaacca atgctcctga
      541 gggccgaatt acattctccg agaagtttgc ttgcccggtc tccggcttca cgatcgcgga
      601 gatcgagcct cggctcttct cgttcaacgc gccgcagggc gcctgccctg cctgcgatgg
      661 ccttggggag aagctcgtat tcgacgaaga cctcgtcgtt ccgaaccacg cactgtcaat
      721 caagaaaggc gcggtcgttc cttgggcgaa gtcgaacccg ccgagcccct actacatgca
      781 ggtgcttgca agtcttgccc gcgcttacga tttcgacctt gatacgccct ggacggatct
      841 tcccgaggaa gcgcgcaacg tcattcttca tgggaccggc ggcaagccgg tcacgcttcg
      901 gttcatcgat ggcaaacgca gctacgaggt gaagaagccg tttgagggcg tgatcggcaa
      961 ccttaaccgg cgcatgctgc agactgaatc tgcgtggatg cgcgaggaat tggcgcgata
     1021 ccaggcgagc cggccgtgcg aagtttgcca cggcgcgcga ctgaagcccg aggcgctgag
     1081 cgtgaagatt gccggcgagg atatcagcat gtcgacgcgg cgcagtgtcg ccgacgcgca
     1141 tgcctggttc ggtgcccttg ccgaaaagct taccccgacc cagcgcgaga ttgctcgagc
     1201 gatcttgaaa gagatcaatg agcggctcgg gttccttcat aatgtcggac ttgactatct
     1261 ccacctcgat cggacgagcg gcacattgag cggcggcgaa agccagcgaa tccggctcgc
     1321 aagtcaaatc ggctcgggac tttccggggt tctctatgtc ctcgacgagc catcgatcgg
     1381 gcttcaccag aaggacaatg atcgtcttct cgaaacgctg aagcggctgc gtggcctcgg
     1441 taacaccgtt ctggtcgtcg agcacgatga ggatgcgata cgatcggccg accaggtcat
     1501 cgacatggga cccggcgccg gcgtccacgg tggcgaagtc atttattccg gcgaccttga
     1561 gggactgctc agctgcgagg gcagtctcac ggcggattac ctgtcgggac gccgcgaaat
     1621 tccgcttccc accaagcgcc gacgaggcaa tggcaagaca cttgtggtgc agggcgcaac
     1681 cgcgaacaat ctccagaatg tcacggcggt gttccctctt ggaaccttca cctgcgtcac
     1741 cggcgtcagt ggctcaggca agtccagcct caccatcgac acgctgtacg ccggtgccgc
     1801 gcgtgcactg aacggtgcac gaatcccctg tgggccgtgc caaaagatct ccggcctcga
     1861 acatctcgac aaggtcatcg acatcgacca gtcgccgatc ggccgcactc cccgttctaa
     1921 tcccgcgacg tacacgggag cctttacgca aattcgcgac tggttcgccg gtctgcccga
     1981 ggcgcaggcg cgcggctaca agcccggccg gttcagtttc aatgtaaagg gtggtcgctg
     2041 cgaggcgtgc cagggtgatg gtcttatcaa gatcgagatg catttcctgc ccgatgtcta
     2101 tgtcacctgt gacgtgtgcc acggcgctcg gtacaatcgc gaaactctcg aggtaagatt
     2161 caaaggcaag tcgatagccg atgttctcga catgaccgtc gaggatgccg ccgacttctt
     2221 caaggcggtt ccggcaattc gtgacaagat ggagatgctg aaggaagtcg ggctcggtta
     2281 tgtgaaagtt ggccagccgg caacgacctt gagcggcggc gaggcgcagc gcgtcaagct
     2341 cgccaaagag ctgtcgcgcc gagcgactgg caagacgctc tacatcctgg acgagccaac
     2401 cactggtctc cacttcgaag acgttcgaaa gctactcgaa gttcttcacc gcttggcgga
     2461 ccagggaaat accgttgtcg tcatcgagca caatctcgat gtcatcaaga ccgcggactg
     2521 ggtgttggac ctcggcccgg gcggcggtgt gaatggcggc cggatcatcg ccgaaggccc
     2581 gcccgaggag atcgtcaaat cggcgcaatc ttccaccggc cactatctca aaccgttgct
     2641 tgatcgtgca tcggtgaagc cagttgtcgt ttctgccgag ccgaaaagac ccaagcggat
     2701 ccggcgacta gtcaccgacg gccaggacct gatcgcagcg aaataaccgg cgcaagggac
     2761 agccggaacc acaggtaggg aagggatgag acccgccctc gcgtcgcata acggggcgcg
     2821 gtgcccccgg gcgggtcccg tcatcacctt ctacgcgcat ggacttttgg cacaagttac
     2881 cgaaggagaa ggtttgggca cgcggcgcac cggacgcgtc ccgcatcgcc aattttttgc
     2941 gttgttcgcg gacctcaatc gcgacgaaac acgagccgac ctcgcgactg ttcctatttc
     3001 ttgggctggt gcggatagcg ctgcagccgt cgctgaccgc gtgcattcaa gctctcggcc
     3061 aggaggcggt ccgatgtctc ttccgcggcg tccggagaaa gaaggacatc gacatcatcg
     3121 ggtccttcca tgtggacgca tccgtcgatc gcacgcacga cgctcggatc gtcataaacg
     3181 ataggcttgt cgttcattgt cttcgcgggc tcttgttgaa gcgccgccac tacttcggcg
     3241 caagttgcgc aacctaacgc gcgcaatttt cggaaaacgc gtttccttcc aaggccgttt
     3301 ccaacgtttc ggaggccgaa cgttgaagcg agatgtagag gtgatgctca gctttcatcc
     3361 gctcatgaaa ccgatttgac cgatcgtcgt tacgaagccg aaagctgtcg cttttgcgac
     3421 attagaaatt gggttcgagc attggcaggt tacaggctct attgcctcga tggggtcaat
     3481 aaggtcgcgt ccgccgaatg gattgaagcg gatgacgacg aggccgcagt cgaggccgca
     3541 agactgaagt ttgacggctc cgaatgcgaa gtttggcagg gccgtcgtct tgttgcgcgc
     3601 gtcgacttga gggccggaag ctagttgctc ggaggtccca tgtaattgcg cgcggcagca
     3661 tcgggatcga ccgcaggctg ggttgcttcc gactgccgcc accgcgcgac atcatcgcgc
     3721 tgttcctcgg tcaggtttgc ctcccattga gcctcggcat ccgcttcgga cagcccgtcg
     3781 atgcgggctg cttgtccctg ctcgatctgg gctgcgactt gctgcaggag cggcttgaaa
     3841 ctgaggttca acatccaatc gggcgcatag gcgagacgcg ccttgtcggt acccgcaagc
     3901 gcggtcctta ggacggaccg gtcggcatgg atatgtgcct tgatgaccgt gctcttcccg
     3961 ccgtcttccg ggacgaaatc catttgagcc tcggcgcctt gtcggccatt gaagaacaag
     4021 gtgacgatga gcttctcgtc gagcgtgcga tcaaccttga tctcgtattg ctctggcgtc
     4081 ccaccctcga aggacgtcat cccactcgtc ttcatgcttc ccagcgcctg ttcgattgcg
     4141 gcgtagcttt gagccgggct cttgtggacg agttgctcgg catccgcgcc ataatagctg
     4201 cccgcagccc agccgccgcc aaccagtatc ggaccgatca cgaacttcag catgctgaac
     4261 gattaaaccg gagccgctaa gaagagctta aacgtcgctt tgcgccgcaa ccttcgcaag
     4321 catctgaccc tccgtcacct gggctcccgc aaccgcacca acttcgacca ccgtaccgtc
     4381 aaaaggtgcc gtcagcgcgt gttccatctt cattgcttcg agggttagca aacgttgccc
     4441 tttggaaacc ttgtcgccgg cggaaacttc gactgccgtg acctttccgg gcatcggcgc
     4501 ctcgatctcg ccatcatgga taccgtggct ggcgccggtg ccacgcgaca tcagtgcaaa
     4561 ttcgaacgat tggccttgcg tgaaaacgat cagacgctcg tcctcacgaa agcccgaaag
     4621 ctccgcgaca tcgccgtcgc caagcaacac tttccgcacg ctgccgcccc tgtgcagcgt
     4681 aagaccaagg tccggcagcg cattgagccg aaatccctga agcacactga acggctcatc
     4741 gtcgtcttcc gaggcaagag caaccgtcgc ggcgccgcgc cacacgtcct ccccgggttc
     4801 tccatcgtcg acgagattgg agaggtggcg ctcgatgaag ccggtatcga ccgcacccag
     4861 tccgaactcg gggtggcgga cagcgcggta aaggaagctg gcgttcgtcc tcaccggcca
     4921 gacttcgacg ccatttagca ttgaggcaag ttcaccgatc gcttcttccc gatctctgcc
     4981 acgactcacc agcttggcaa tcatcgggtc gtagaatggc gaaatcgcgt cgccttcttc
     5041 gactccagtc tcgatgcgcc cctcgtttcc aagatcgaaa tgctcgagct ttccaacgct
     5101 cggaagaaag cctttggcag ggtcctccgc gtaaagccgt gcctcgattg catggccggc
     5161 aattcgcagt tcgtcctggc gcttgggcag cggctcaccc gatgcgacgc gcaattgcca
     5221 ttcgacgagg tcctggccgg agatttcctc ggtgactgga tgctcgacct gcagccgcgt
     5281 gttcatttcc atgaaccaga tgcgatcggc gctgagtcct tgtgatgcat cggcgatgaa
     5341 ctcgacggtg cccgcgcctt cgtaattgac cgctttggcc gcacgaacgg cggcggcgca
     5401 gactgcctcg cgagtcctcg gatccatgcc tggcgccggc gcttcctcga taactttctg
     5461 gtggcgcctc tgaagcgagc aatcacgctc gaacaaatgg acgacgtttc ccaaccgatc
     5521 gccgaatacc tgaacttcga tgtggcgcgg cgactggaca tatttctcga tcaacacgcg
     5581 atcgtcgccg aacgcgttgg ctgcctcgcg ctttgcgctg tcgagagcat cggcaaactg
     5641 ttcgggtgcg tcaacacgcc gcatcccctt tccgccacct ccggcgacgg ccttgatcag
     5701 gaccggatat ccaatcacag cagattcggc cttcaatcgt gctgggtcct ggtcgtcgcc
     5761 aagatagccc ggagtaactg ggactccggc ctcggccatg agctttttgg ctgcgtcctt
     5821 tagacccatt gcgcgaatgc tttcgggctt gggtccaacc cagatcagcc cggcgtcgat
     5881 tacagcctgt gcaaactccg cattctccga gagaaagccg tagcctggat gaattgcttc
     5941 ggcgcttgtc cttttcgccg catcaatgat gacctcgccg cgaaggtatg aatcgcgcac
     6001 cgggctcggg ccgatatgca cggcttcgtc cgccattttg acgtgaagcg cccttgcgtc
     6061 ggcatcggaa tggaccgcaa tcgttcggat cccaagacgt ctcgcggtcc ggatcacgcg
     6121 acaagcgatc tccccgcggt tcgcgattag caacgacttg atcatatgcg cctgcaaccg
     6181 gtgacgcgtt catggaagca cgatcgagct cgcttaccct tgcccgaaag gccgccggca
     6241 ggctgctgca ttgccgcagc accgaacgcc ggaaaacgcc gcgaagcaga ctccaaacct
     6301 cgtccgctgc catgggcggc gagcaagccg atagcatccc tcatgcggcc tcaactcgca
     6361 tcggctcttc cgcttcaagc ggtactagcc cgagcttggc aaaaagggct gcatccttgt
     6421 catcgccggc atttgccgcg gttaggagct tgtcgccggt gaaaatactg ttggcgcccg
     6481 caaggaagca gagcgcctgc gtcgcttccg ccatcgcttc gcgacccgcc gacaaacgaa
     6541 ccatcgactt tggcatggtg atcctcgcaa cggcgaccgt ccggacgaac tcgatgtcat
     6601 cgatcatctt cacaccatgg agcatatcac caagagcggt gcccttgatt ggaacgagcg
     6661 cattgatggg cacgctttcg ggatgcctgg gcaatgtcgc gagcgcatgg atgaacccca
     6721 ctcggtcggc tcggctctca cccatgccca ctatgccgcc gcagcagacc gcgattccag
     6781 cgtttcgcac ttcttcaagg gtgtcgagcc gatcctcgaa ggttcgggtg gtaatgatcg
     6841 caccataatg ctccggcgcg gtgtcgatgt tgtgattata ataatcgagg ccggcgctct
     6901 tcagtgcgac agcctgctcg cggctcagca ttcctagcgt catgcacgtt tcaagaccga
     6961 gtgccttcac ttcgcggatc atcctcgcga gtgaagggat gtcgcggtcc ttgggtgagc
     7021 gccacgcagc ccccatgcaa aatcgctgcg aaccatcttc cttggctttg cgcgcggcgg
     7081 aaatgacggc gtcaatgtcc atcagcttct cggccttgag gccggtttgc gcatgcgcgg
     7141 actgcgaaca atagccacaa tcttccggac agccgccggt cttgatagac aacagggtgc
     7201 agagctgaac tccaacaggc gaatgattct gccggtggat ttcggcggcc tggaagatca
     7261 gttccgtgaa aggtaggttg aagagaccgg cgatctcgtc gcgcgtccag tcgtttcgca
     7321 tcgatcgttc acatcctaaa gacgccaaat tgggggtgct cagctattgg agcattcaat
     7381 gttgcggcaa aggcgaggcc aagcacatcg cgcgtctgaa ccgggtcgat aattccatca
     7441 tcccacagcc gcgccgtcgc gtgccaggga ttgccttcct cttcgtagag ctgccggatc
     7501 ggtgccttga aatcctctgc ttccgccggc gtccacttgt cagcgttgcg gtgaacggtc
     7561 gcaagcacgc tcgcggcttg ttcgccgccc atgacactga tcctggagtt gggccaggtg
     7621 aagaggaagc gcggcgagta agcacgaccc gacattccat aattgccggc accgaagctt
     7681 ccgccgatga gaacggtgat tttgggaacg ctcgcggtcg caactgccgt cacgagcttc
     7741 gcgccatgct tggcaatgcc ttccgcttca tacttgccgc cgaccatgaa acccgaaatg
     7801 ttctgaagga agagcagcgg cgttcgcctt tggcaggcga gctcgatgaa gtgcgcacct
     7861 ttgacagcgc tttcgctgaa gaggacgccg ttgttcgcaa gaattgccac tggaatcccc
     7921 cagatatggg cgaagccgca cacgagtgtt ccaccgtatt gcggcttgaa ctcgtgaaac
     7981 tcggaggcat caacgatccg cgcgatgact tcgtgcacgt catagggtgc tcgaacgtcc
     8041 ttgggtatga ttccgtacaa ctcgtcggca tcaaatgctg gtggtctcgg ttcgcgcagt
     8101 tcaatgccgg cgcccgcttc gggttgaagg gtcgagacga tgtcgcgaac gatcgcgagc
     8161 gcatggtcgt cattttctgc aagatgatca acgacaccgc tcttcttcgc gtggagatcg
     8221 ccgccaccaa gttcttcggc gctgatctct tcgccggtcg ccgccttcac tagcggcggc
     8281 ccaccaagga agatcgtgcc ctgattgcga acgatcacgc tctcgtcgct catcgcgggg
     8341 acgtacgccc ctcctgcagt acaactgccc ataacgcagg caatctgagc gatgcctttc
     8401 gcgctcatct gcgcctggtt gaaaaaaatg cggccgaaat ggtcacggtc tggaaagaca
     8461 tcggcctggt gcggcagatt agcgccacca ctatcgacga gatagatgca cggcaaacgg
     8521 ttctgctcgg cgatctcttg cgcccgcaaa tgcttcttga cggtcatcgg ataataggtg
     8581 ccgcccttta ccgtcgcgtc gttcgatacg atcaggacct gcctcccgga aaccttgccg
     8641 accccggcaa tgattccagc gccgggcact tctccatcgt acatgtcgca cgccgcaagc
     8701 tgag
//
LOCUS       DASRBJ010000340         8724 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_650264,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000340 DASRBJ010000000
VERSION     DASRBJ010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8724
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_650264"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1719)
                     /locus_tag="VE968_09375"
     CDS             complement(<1..1719)
                     /locus_tag="VE968_09375"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011950918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheA"
                     /protein_id="HZU52070.1"
                     /translation="MDDLIAEFVAECREMLEALGGEIVAWEAQPDDKARLDSIFRFVH
                     TVKGNCGFFDFPRLEALSHAAEDALADVRAGRRYPDGALVSAVLAIIDRIGEMVAAIE
                     ANEDMPAGDDSALIHALEPGSDGNAAPAAVPLQDGGIRSSAAPRTIRLSVELLDRVMS
                     TVSDMVLARNELARRLRESSSDVFVDGAFERLSSIIAEMRDAITRTRMQRIENLFVAL
                     PRMVRDLSAELGKQVLVDVDGGDVELDREMIEMIRDPLTHIIRNAVDHGIEMPTERLR
                     AGKREIGVLSVSARQSGNQILIDIHDDGRGIDGKKLVEKAVANGLLSKEDALQLSARD
                     KLALIFEPGLSTAKEVTAISGRGVGMDVVRSNVERIGGIVEVDSKLGEGTRMTLRVPL
                     TLTIIPALTVSVAGQHFAIPRSAIEEIVRANGESVTLEHVGGAGVATIRGRRVPEVSL
                     ASVLGLPDTMGASDRTLIVLRPAGGDVYALSVDRIHDHEELVVKPAAPAVMATGLYAG
                     TTLADDGSPILLMDPAGIAEVGGVKLENLEKAARIAQMPTSEAARATPVLLFRGLDGG
                     RRALRLA"
     gene            complement(1781..2365)
                     /locus_tag="VE968_09380"
     CDS             complement(1781..2365)
                     /locus_tag="VE968_09380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase family protein"
                     /protein_id="HZU52071.1"
                     /translation="MSPVGALNNGVELLADETDPDMRERCLELLAESARASANKLKFF
                     RLAFGAAGGFGEEIDTLEAQIALEGLFGSERRIELAWMVSSERLPKNAVKLLLNLAMV
                     AGDALVRGGQLHVGAERRDQEIELAVRAEGPRILLDPVLRETLVTGGTGEIEPRAAGA
                     WLAHQLVADAGGSIQLSDPSSDALLIGASLPRNG"
     gene            2504..3454
                     /locus_tag="VE968_09385"
     CDS             2504..3454
                     /locus_tag="VE968_09385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HZU52072.1"
                     /translation="MGEIQTIDVRLDATHAGWRLDRALASAVPTLSRERLKTLIRSGA
                     VQGSGETVRDPATKVRGEEAFQVAVPNAEPCHNAPQDIPLEIAFEDDHLLVVDKPAGL
                     VVHPAAGNLDGTLVNALLHHCQGSLSGIGGVARPGIVHRIDKDTSGLLVVAKTDVAHE
                     GLAKQFAAHSIERRYLAIVTRVPASSGGVIDAPLARSAANRKKIAIVADGRGKRAVTH
                     WRKLEVLRDAALIECRLETGRTHQVRVHMASIGHPLVGDPVYGRTGKTHVKLLKEIGF
                     HRQALHAAQLGFTHPVTKHRLSFSSPMPPDMQELFNALGV"
     gene            3516..4424
                     /gene="rpoH"
                     /locus_tag="VE968_09390"
     CDS             3516..4424
                     /gene="rpoH"
                     /locus_tag="VE968_09390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007685074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HZU52073.1"
                     /translation="MAEAKGIVSLPASGGEAGLNRYLSEIKKFPILSPEEEYMLAKRW
                     REHGDTEAAAKLVNSHLRLVAKIAMGYRGYGLPVSELISEGNIGLMQGVKKFEPDRGF
                     RLATYAMWWIRASIQEFILRSWSLVKMGTTAAQKKLFFNLRRMKNQIDAFEEGDLKPQ
                     DVAKIATDLGVSEEEVVSMNRRMAMGGDTSLNAPLKGDEGAENQWQDFLVDHGPLQDE
                     RIAEDQESRVRHDLLMNALESLNDREKHILMERRLADEPKTLEELSQVYGVSRERIRQ
                     IEVRAFEKLQAALLRLAGERRLLPAA"
     gene            complement(4461..5510)
                     /locus_tag="VE968_09395"
     CDS             complement(4461..5510)
                     /locus_tag="VE968_09395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HZU52074.1"
                     /translation="MLDPQPVQDPFGHAARSPLQMPLRAWKDILERTYKRVWDDNVGL
                     VAAGVAFYGFFALLSLLGLIVLVYGFVADPMTVIEHMEALTAVLPTDVAFIIGDQLMN
                     AVRASQKTKGLGILLAFLVATYGGTNGATSVITALNIAYEEKEKRSLIRFYLLAVGMT
                     FSALVAALAAIASTAALAFLQHLLPQAARPLVLAGKIGGYLMIVLVAAGVASTLYRFG
                     PSREQAKWKWITPGSLFVALSWLFLTWAFGIYVGRFTNYHATYGSLGAVVALLTWMYL
                     SAYAFIFGAELNSEIEHQTARDSTTGSPRPLGERGAWAADNVATDDTIQDRPEKQREG
                     ERLTEASPKVAQERG"
     gene            complement(5528..6787)
                     /locus_tag="VE968_09400"
     CDS             complement(5528..6787)
                     /locus_tag="VE968_09400"
                     /inference="COORDINATES: protein motif:HMM:TIGR00765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HZU52075.1"
                     /translation="MASNVHRLLNNGARPGSAAETPAEIPPRGWKEIAVRTWKEGSKD
                     NISIVAAGVAFYGLLAMVPLLGATVLTYGLVASPDTVLHNVQSLASSLPKDVAKLVGD
                     QLLNVVKTSGGKKGLGLLIALAVALWGARNAASSMITALNIAYEEQEKRGFVKVTLLS
                     LAITFAGVVLGMIGAVVVGLMAKIQAWLPSLGSVGIIAGRVVAYLMLGAVAAAAAATL
                     YRYGPSRAKAKWEWISPGSVFFAVGWVLLTLGFGFYVSHFGKYNVTYGSLGGVIVFIT
                     WLYLSAFILLYGAEFNSEVEQQTAKDTTDDASAKPLGDRGAWSADHVAGGTKSGDSRA
                     AQLSDKQAREPSDLRSTAQLPHEHPYLVARATNRAGSILGMQKVGMVSAALSTLGLSL
                     LRRRGREGAGAALLAGAVGLSLLKRKG"
     gene            6947..>8724
                     /locus_tag="VE968_09405"
     CDS             6947..>8724
                     /locus_tag="VE968_09405"
                     /inference="COORDINATES: protein motif:HMM:NF009379.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HZU52076.1"
                     /translation="MAGESAKGTRVIALVGPAGAGKTSLAEAMLFAAGATDRLGSTAN
                     GSSIGDSSPEARQRGGSTELNLYNFDYLGDSFAIIDVPGSIGFAADGAKALAIADLAI
                     VVVDPDAGRAPLAAPALRALDELGIPHLIFVNRIDQAHGRIRDLLTALQPISVSPLIA
                     RQVPIWDGEKVSGFIDLALEYAFRYRPGTASERVDIPASLQEREHEARTHMLEQLADH
                     DDELLEQLLMDEPPTREKVLQDLARETSANLGVSVLFGSASSSWGVRRLLKAIRHESP
                     APEATASRLGVSDPSFYVFKILHGSIGRLAMARCLGGRITEGTDLKTSNNEHARVGSL
                     FKVQGEKTQKINAASAGDVIAVAKIDMVKAGQWLSSGKVPATIEIAYPARNCAIAIEP
                     ADRKDDVKLSGALQRLGDEDAALIIEHDDANHEIRLRGVNDEHLNTVIAKLKRRYGVE
                     VKSHPPVVGYRESIRKAVTQKGRHKKQSGGHGQFGDVIIEVKPLPRGSGFVFEERIHG
                     GSVPKQWIPAVQEGVVEAMQKGPLGFQVVDCAVTLVDGSYHSVDSSELAFRLAGRIAM
                     QEALAAASPHLLEPMHRLTVVCPSSAT"
BASE COUNT         1851 a         2639 c         2581 g         1653 t
ORIGIN      
        1 ggcgaggcgc aacgcacgac ggccgccatc gagaccgcgg aagagcagaa ccggcgttgc
       61 ccgcgcagct tcgctcgtgg gcatttgcgc gatgcgcgcg gccttttcga gattttcaag
      121 tttgacgccg ccaacctcgg cgatgcccgc tggatccatc aagagtatcg ggctcccatc
      181 atcggcgagc gtggttccag catatagccc agttgccatt acggcgggcg ccgcgggctt
      241 tacgacgagc tcttcatggt catggatgcg atcgacggag agcgcgtaaa cgtcgccgcc
      301 cgcaggccga agaacgatca acgtccgatc gctcgcaccc attgtgtccg gcagcccaag
      361 aacgcttgca agcgagactt ccgggacccg gcggcccctt atcgtcgcaa caccggcacc
      421 gccgacatgc tccagcgtga cgctttcgcc gttcgcgcgg acgatttcct cgatcgctga
      481 acgcgggatt gcaaaatgct gaccggcgac cgacaccgtg agcgctggaa tgatcgtaag
      541 agtaagcggc acgcgcaagg tcatacgcgt cccctctccc aacttgctgt cgacctcgac
      601 gatgccaccg attcgctcga cgtttgaacg gacgacatcc atgccgacac cgcggcccga
      661 gatcgccgtc acctccttgg ctgttgaaag gcccggttca aagatcagcg cgagcttgtc
      721 acgcgcgctt agctgcagcg catcttcctt gctgaggagg ccgttcgcga cggctttttc
      781 aacgagcttc ttgccgtcga ttccgcgtcc atcatcatga atatcgatca gtatctggtt
      841 acccgattga cgggccgaaa cggacagaac tccaatttcg cgtttgcccg cgcgcaagcg
      901 ttcggttggc atttcgattc catgatcgac tgcgttgcga atgatgtggg taagtggatc
      961 gcggatcatc tcgatcatct cacggtcgag ctcaacgtcg ccgccgtcaa cgtcgaccag
     1021 cacctgctta ccaagctcgg ccgacaggtc gcgcaccatg cgtggcagcg cgacgaagag
     1081 attctcaatc cgctgcatgc gtgttcgggt gatcgcatca cgcatctcgg cgatgattga
     1141 cgaaagtcgc tcgaacgcac cgtcgacaaa cacgtcggat gacgattctc ttagtcgccg
     1201 ggcgagttcg ttgcgagcga ggaccatgtc cgaaacagtg ctcatgactc ggtcgaggag
     1261 ctcaacggat aggcggatcg tccgaggtgc cgccgaagag cgaatcccac cgtcctgaag
     1321 cggcactgca gccggcgccg cattgccgtc tgagcccggc tcgagcgcat gaattagcgc
     1381 gctgtcgtcg ccggccggca tatcctcgtt cgcctcgatt gcggcaacca tctcgccgat
     1441 gcgatcgatg attgcgagaa ccgcactgac cagggcaccg tccgggtatc gccggccagc
     1501 gcggacgtcc gccagtgcat cctcggcggc atggctcagc gcttcaaggc gcgggaagtc
     1561 gaagaaaccg caatttccct ttacggtgtg gacgaagcgg aaaatgctgt cgagccgcgc
     1621 cttgtcgtct ggctgcgctt cccaagcgac gatctctcca ccaagagctt cgagcatttc
     1681 gcggcattcc gctacgaatt ccgcaatcaa gtcgtccatc ggcgaaccgg ccctcagcgc
     1741 tgctttgcga gccttatgcc gaggaggtgt taatggcgcg ttatccgttc ctgggaaggc
     1801 ttgctccaat aagaagggcg tcgctggacg gatccgatag ctgaatcgag cctccggcgt
     1861 cggcaacgag ctggtgagcg agccaagctc ctgccgcgcg cggttcgatt tcgccagtgc
     1921 ctcccgtcac gagtgtttcc cgaagcactg gatcaaggag gatgcgcggt ccttcggctc
     1981 gaacggcaag ctcgatctcc tgatctcgcc tttccgcacc gacgtgcaac tgcccgcctc
     2041 ggacgagtgc atcgccggca accattgcga gattgagtag aagcttcact gcgttcttgg
     2101 ggagcctctc gctgctcacc atccacgcaa gctcgatccg ccgttccgat ccaaaaagac
     2161 cctcaagcgc aatttgcgcc tcgagcgtat ctatctcctc gccaaaccca cctgctgctc
     2221 caaaggccag tcggaagaac ttgagcttgt tcgccgaagc tcgagcgctt tccgcgagca
     2281 gttcaaggca ccgttcgcgc atatcggggt ccgtctcgtc ggcaagcaat tcgacaccat
     2341 tgttaagcgc gccgacgggg gacatgaggt cgtggcaaag ccgcgaacac agcaaactgg
     2401 ctaaatcgat tggattcatc gcaagatgtt gatgggacag agtttgaagt cacgcaagcg
     2461 gcgacattga agagtttcgg actcgtaccc atatccacga ggaatggggg aaattcagac
     2521 gatcgatgtg cgcctggacg ccacccatgc gggttggcgt ctcgaccggg cactggcgtc
     2581 cgccgttcca actctttctc gtgaacgtct aaagactcta atccggagcg gggcggttca
     2641 aggttcgggc gagaccgttc gcgatccggc aacgaaggtt cgcggcgagg aagccttcca
     2701 agttgcggtg ccgaatgcgg agccctgcca taatgctccg caggacatcc cgctggagat
     2761 tgccttcgag gacgaccatt tgctcgtcgt ggacaagcct gctggactgg tggttcaccc
     2821 ggcggccggc aacctagacg gcaccttggt gaatgccttg ctccatcatt gccaaggttc
     2881 gctgtcgggg atcggcgggg tcgcacgacc gggtatcgtt caccggatcg acaaggacac
     2941 gtccgggctt ttggtggttg cgaagacgga cgttgcgcat gaaggtcttg cgaaacaatt
     3001 tgccgcccat tcgatcgagc ggcgctatct ggcgattgtt acgcgagttc cagcgtcgag
     3061 cggcggcgtc atcgacgcgc cacttgcccg ctcggccgcc aaccgcaaga agatagcaat
     3121 agtcgccgat gggcgaggca aacgcgcagt aacgcactgg cgcaagctcg aggtgcttcg
     3181 cgacgcggcg ctcattgaat gccggctcga gaccgggaga acgcatcagg tacgcgtcca
     3241 catggcttcc atcggccatc cgctcgttgg cgatccggtg tatggccgaa caggaaagac
     3301 gcacgtcaaa ctgctgaagg aaattggatt tcatcgacag gcactgcacg ccgcgcaact
     3361 tgggttcacc catcccgtaa cgaagcacag gctatcgttc tcaagtccca tgccgccgga
     3421 catgcaggaa ctgttcaacg cacttggtgt atagctaatg actcgtttgg ggcggcttta
     3481 cggtcacccc tcgcaaaagg gagaagacgt tagacatggc tgaagcaaaa gggatcgtct
     3541 cactccccgc atccggtggg gaggccggcc tcaaccggta tctttcggaa atcaagaaat
     3601 tcccgatcct cagccccgag gaagaatata tgctcgccaa gcgctggcgc gagcatggcg
     3661 acacggaagc tgcggcgaaa ctggttaact cgcacctccg gctcgtcgcc aagattgcga
     3721 tgggctaccg aggctatggg ttgcccgtga gcgagctcat cagcgagggc aatattgggc
     3781 tcatgcaggg cgtcaagaag tttgagcccg atcgcggatt tcggcttgct acctacgcaa
     3841 tgtggtggat ccgcgcctcg atccaggaat tcatcctgcg ctcgtggagc ctcgtcaaaa
     3901 tgggcaccac ggccgcccag aaaaaattgt tcttcaacct gcgacgaatg aagaaccaga
     3961 tcgacgcgtt cgaagagggc gacctcaagc cgcaggacgt cgctaagatc gcaaccgacc
     4021 ttggcgtcag cgaggaagag gtcgtctcaa tgaaccgtcg catggcgatg ggaggagaca
     4081 ccagcctcaa tgcaccgctc aaaggtgatg agggagccga gaatcaatgg caggacttcc
     4141 tcgtcgacca cgggccactc caggatgagc ggatcgcgga ggaccaggaa agccgagtcc
     4201 gccatgatct gctaatgaat gcgctcgaaa gcctcaacga ccgagaaaag catattctca
     4261 tggaacgacg cctcgccgat gaaccgaaga ctctggagga attgagccag gtgtacggcg
     4321 tcagccgcga gcgaatccgg cagatcgagg ttcgtgcgtt cgagaagctt caagcggcac
     4381 tgctccggct ggcgggcgaa agacgcttgc ttccggcggc ttgaggcgct cgtcagtcgc
     4441 gccgtcggcc aacaaccact ctatcctctc tcctgggcaa ccttgggcga agcctcggtt
     4501 agacgctcgc cctcgcgttg cttctcaggc cgatcctgga tcgtatcgtc ggttgcgaca
     4561 ttgtcggctg cccatgcgcc tctttcgcca agaggtctcg gcgagccggt ggtgctatct
     4621 ctagccgtct gatgctcaat ttcgctgtta agctctgcgc cgaagatgaa ggcataagcc
     4681 gaaagataca tccacgtcag caaggcaacg accgcaccca gcgagccgta ggtcgcgtga
     4741 tagttcgtga aacggccgac gtagatgcca aaggcccagg tcaggaacag ccagctcaaa
     4801 gcaacaaaca ggcttccggg cgtgatccat ttccacttgg cctgttcgcg agacgggccg
     4861 aagcgataga gtgttgaggc gaccccggcg gcaaccagga cgatcatgag atagccgccg
     4921 attttgccag cgagcaccaa ggggcgggca gcctgcggca ggaggtgctg caggaaagcc
     4981 agtgctgcgg tggacgcgat tgccgcaagt gccgccacaa gtgcactgaa ggtcatgccg
     5041 acggcaagca gatagaagcg gatgagactt cgcttttcct tttcttcgta ggcaatgttg
     5101 agggcagtga tgaccgacgt tgcaccattg gttccgccat atgtcgccac gaggaaagcg
     5161 agcaggattc cgaggccctt ggtcttctgt gacgctcgca cggcattcat cagttgatcg
     5221 ccgatgatga atgcaacgtc cgtcggaaga acggccgtca acgcttccat gtgctcaatc
     5281 accgtcatcg gatcggcgac aaaaccgtaa acgagaacga tgagcccgag gagcgacaga
     5341 agtgcaaaga agccgtaaaa cgcgacgccg gcagcaacga gccccacatt gtcgtcccac
     5401 acccgcttgt acgtgcgctc gagaatatcc ttccatgccc gaagcggcat ctgcaatggc
     5461 gagcgcgccg catggccaaa gggatcctgg accggttgcg gatcaagcat cagccgaacg
     5521 tctgcctcta gcctttgcgc ttaagcagcg acagtccgac cgcgcccgcg agcaatgctg
     5581 cccctgcccc ctcgcgacca cgtcttcgca acaacgacaa gccaagagtc gagagcgccg
     5641 ccgacaccat tcctactttt tgcattccaa gaatggaccc cgcccggttc gttgctcttg
     5701 caacgagata cggatgctcg tgcggaagtt gggcagttga tctgagatcg gacggctccc
     5761 tcgcttgttt gtcggacagc tgggctgcgc gagaatcccc acttttcgtg ccaccagcga
     5821 catggtctgc tgaccaggcg ccacggtctc caagcggttt cgcgctcgca tcatcggtcg
     5881 tgtccttcgc agtctgctgc tcgacctcgg aattgaattc agcaccatag agcaggatga
     5941 aggcggacag gtagagccat gtaataaaga cgatcacccc gccaagcgat ccataggtca
     6001 cgttatactt gccaaagtgc gaaacgtaga agccgaagcc aagggtcagc aggacccagc
     6061 ccaccgcgaa gaacactgac cccggactga tccactccca tttcgccttc gcccgagagg
     6121 gtccgtagcg gtaaagagtc gcagcggcgg ccgcagcaac cgcgccaagc atgagataag
     6181 caaccactct gccagcgatg atgccaaccg agccaaggct cggaagccag gcctggatct
     6241 ttgccatgag cccgaccacc acggcaccga tcatcccgag caccacgccc gcgaacgtga
     6301 ttgcgagcga tagcaaggtc actttgacga aaccccgttt ttcttgctcc tcgtacgcga
     6361 tgttgagcgc tgtaatcatc gagcttgcgg cgttgcgtgc accccacagc gcgactgcga
     6421 gtgcgatcag tagtcccaga cccttttttc cgcccgaggt ttttacaacg ttgagcaact
     6481 ggtcgccgac aagcttggca acgtccttgg ggaggctgct cgccagcgat tgcacattgt
     6541 gcaacaccgt gtcgggacta gcgacgagcc cgtaggtcaa caccgttgcg ccaaggagag
     6601 ggaccatggc gagaaggcca tagaatgcga ccccagcggc aacgattgag atattgtcct
     6661 tcgatccctc tttccacgtt cggaccgcaa tctctttcca gccacgaggt gggatctcgg
     6721 cgggagtttc ggccgcgctg cctggccgag ctccattgtt caacaagcgg tgcacattac
     6781 tggccatcac ctcgatctcc ttggccgcgt aaccaatgcc gcgtggaagc cgttcccctc
     6841 ttgccaagct cgaaaaacag gcggacggtg ggagtttcct gaaaggcgcc cgagcgcctc
     6901 tgaaatgcga ctcgcgcgcc cgtgaaccgg acgaaaggag agtcgcgtgg ctggagaatc
     6961 tgccaaaggc acaagagtaa tcgcgctggt gggacccgcc ggcgcaggaa agacgagcct
     7021 tgccgaagcg atgctgtttg ccgccggcgc aaccgatcgg ctgggatcga ctgccaatgg
     7081 ctccagcatc ggcgactcaa gcccggaagc gcgccaacgc ggcgggtcga cggagctcaa
     7141 tctctacaac tttgattatc tcggcgattc gttcgccatc atcgatgtgc ccggctccat
     7201 cggctttgcc gctgacggag caaaggccct tgcgattgct gatctcgcga tcgtcgtcgt
     7261 cgaccctgat gccgggcgcg ctccgctcgc cgcgcccgcg cttagagcgc tcgacgaact
     7321 tggcattccc cacctcatat tcgtcaaccg catcgatcag gcccacgggc ggatccgcga
     7381 tttgctcacg gcgctccagc caatcagcgt ttcgccgctc atcgcgcggc aggtgcccat
     7441 ctgggatggc gaaaaggtca gtgggttcat tgatttggcg cttgaatatg cgttcagata
     7501 ccgccccgga accgcatcgg aacgcgtcga catcccggcc agtcttcaag agcgcgaaca
     7561 cgaagcgcga acccacatgc tcgagcaact tgccgaccat gacgacgagc tactcgaaca
     7621 gctgctgatg gacgaaccgc cgacgcgcga gaaagtgctt caggatcttg ctcgcgaaac
     7681 aagcgccaat cttggcgttt cggtattgtt cgggtcagcg tcaagctcat ggggagttcg
     7741 tcgactgttg aaggcgatta ggcatgaatc cccggctccc gaagcgaccg ccagccgcct
     7801 tggtgtttcg gacccttcat tctacgtgtt caagatcctg catggctcta tcggcaggct
     7861 ggcaatggcc cgttgcctcg gcgggcgcat cacggaagga acagatctca agacgagcaa
     7921 taatgagcac gcgcgcgtcg gttcgctctt caaagtccaa ggcgaaaaaa ctcagaagat
     7981 caacgcggcg tcagcaggag acgtcattgc agtagccaag atcgacatgg tgaaagctgg
     8041 gcagtggctg agcagcggca aagtccccgc gacgatcgaa attgcctatc cggcacgaaa
     8101 ttgcgcaatt gcgatcgagc ctgcggaccg gaaggacgac gtcaaattgt ctggcgcgtt
     8161 gcagcgactt ggcgatgaag acgctgcgct catcatcgag catgacgatg ccaatcacga
     8221 gattcgcttg cgtggagtga acgacgagca cctcaacacc gtgattgcaa agctgaagcg
     8281 acgctatggt gtagaagtta agagtcaccc gcccgtcgtt ggttatcgtg aatcgatacg
     8341 aaaggcagtg actcagaagg gccgtcacaa gaagcagtct ggcggccatg gccagtttgg
     8401 tgacgtgatc atcgaggtga agcctcttcc tcgcggttcc ggcttcgtgt tcgaggagcg
     8461 gatccacggt ggttccgtgc caaagcagtg gattccggcc gtccaggaag gcgtcgtcga
     8521 agcgatgcaa aagggtccgc tcgggttcca ggtggtcgat tgtgcggtga cgctagtgga
     8581 cgggagctat cacagcgtcg acagctcgga actggcattc cgtctcgccg gtcgcatcgc
     8641 catgcaggaa gcgctcgcag cagcgagccc gcacctgctt gaacccatgc accgattgac
     8701 ggtggtttgt ccttcaagtg cgac
//
LOCUS       DASRBJ010000341         4316 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_250957,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000341 DASRBJ010000000
VERSION     DASRBJ010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4316
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250957"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..243)
                     /locus_tag="VE968_09410"
     CDS             complement(<1..243)
                     /locus_tag="VE968_09410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6499 domain-containing protein"
                     /protein_id="HZU52077.1"
                     /translation="MGFLLPVDSQLEIERNWRNADCYAELINADRTLFAWEWLRRDWE
                     YRAAALDAYAGRKKMRARHFGLVRFEHPDLPVPRARP"
     gene            415..882
                     /locus_tag="VE968_09415"
     CDS             415..882
                     /locus_tag="VE968_09415"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52078.1"
                     /translation="MRRRVLIKARVRSGTQWSDACILNISSRGLMIQSHRAGPEGSLV
                     ELHRGDHVIVARVVWRDGSRAGLQSEERLPVEQIMSLSNSGSLRLVASDGALIDRRRR
                     PRPQRTDARSRGRAIEFAGTAVLLVMFALGIGAMALHALAQPLAIAGAALSGH"
     gene            1032..1988
                     /locus_tag="VE968_09420"
     CDS             1032..1988
                     /locus_tag="VE968_09420"
                     /inference="COORDINATES: protein motif:HMM:NF023273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3365 domain-containing protein"
                     /protein_id="HZU52079.1"
                     /translation="MAGAYQKALDWHPRGTHAFWAQLTGGIQGVGLSAKFNLLMLAVA
                     AVGLGLFALAAEPLVNAVAREEVLQSSRIMMESAAGARKYTSEQIAPILKPQIGEHFY
                     PQSVSAYAAKRNFDVIHAKFPDFMYHEAALNPTNPEDRASDWEADIINDFRSHPEKKE
                     ISLERSTATGPMLELARPIVNKPACLECHDTAADAPKSMIALYGTQNGFGWKPQEIIG
                     AQIVSVPMSASALRAEHIRRLFLIPFLLFLVLLFVSINILLHFVVIRPMNKIAASADA
                     VSMGKIDAPEYRYAGRDQIGRLATSFNRMHRSLVEAMRMLGE"
     gene            1985..2863
                     /locus_tag="VE968_09425"
     CDS             1985..2863
                     /locus_tag="VE968_09425"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003953 - NAD+ nucleosidase activity
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="toll/interleukin-1 receptor domain-containing
                     protein"
                     /protein_id="HZU52080.1"
                     /translation="MSNARDAGAHFLSYSRADQDFALRFARDLRANGVAIWVDQLDIR
                     PSEHWDRAIERAVRDCRGLVVIVSPRSAASDNVADEISFAIDHRKSVLPVMIERCTLP
                     LRIARMQVIDATVDYTRALQQCVEVISSGAVSSTGDEGSASPLGIHDPQIIIAAKKDL
                     TAILGPVAAIVVDKEARKARSLDDFYRRLSEHIPEGPHRERFTRSTQANVVQPAPAQP
                     SGEIPASGAPLSIDAAELDRLGSILTHYLGPIATVIARREGAEAQSLDDLQQRLASKI
                     PDERQRVELLERLRQR"
     gene            2975..>4316
                     /locus_tag="VE968_09430"
     CDS             2975..>4316
                     /locus_tag="VE968_09430"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HZU52081.1"
                     /translation="MQFTIVPHSEGDGFRFDIGADGRSQTYLVPTATQQDFSLFFRAL
                     AGDFGTRIPHVFTRSSDYPPAPFPWRPLLTENVHPRILVGYGDPAVLKTDEGWWLVAT
                     SNDAPDAFPILHSADLKKWEPKGFIFPSGQEPSWTATGRNTADFWAPEMAKVGDEYWT
                     VFTARQRTNALAIGLARAPSPLGPWIDNGVPLITGKPVNTTGLGFDATQPLMSGGVID
                     SHLFLDANGERYLFWKDDTNGIWPRPLAMLLRQHPALIDELFDDGRDRRTAAFAAAIV
                     DWANRQRPMTRFFVMQPLIEAALDNWQKVRVILAEFGLAAATIVEAMTTPIRAQRISD
                     DGRSLVGEDTIVLKNDEDWEGHLIEGPFVTYQQDRYWLFYAGNDFSTPAYGIGVAVAD
                     HPLGPYTKQGAPILKSTREWVAPGHASVAPGPNGGPQLFFHAFHPGTGGYNAFRA"
BASE COUNT          877 a         1293 c         1276 g          870 t
ORIGIN      
        1 aggacgcgca cgcggaacag gcaaatcggg gtgctcgaag cgcaccagtc cgaaatgcct
       61 tgcccgcatc ttcttccgcc cggcgtacgc gtcgagtgct gctgcgcgat actcccaatc
      121 gcgccgcagc cactcccagg caaacaatgt ccgatccgca ttgatcagtt cggcatagca
      181 atccgcgtta cgccagttgc gttcaatctc gagttgagag tccacgggca gaagaaaacc
      241 cataattcgg gatcgaccca ttcgcccatg agggggactt gagcttccgt ggacgagact
      301 gaacagggca aataatccga tacggaccaa tggtttagat gtccgacatc gaggaaacgc
      361 tacacccgcc ggatggccgt cgcgaagagg aacaggaacg agcgcccgcg tgaattgagg
      421 cggcgcgtac tgatcaaggc gcgtgtccga agcggcacgc agtggagcga tgcatgcatc
      481 ctcaacattt cgtcgcgcgg tctcatgatc cagtcgcatc gcgccggtcc cgaaggaagc
      541 ttggtggagc tccatcgcgg tgatcacgtg atcgtcgcac gcgttgtttg gcgtgacggc
      601 agcagggctg ggctgcaaag cgaggaacgc ctccccgtcg agcaaatcat gtccctcagc
      661 aactccggca gcctgcgctt ggtggcgtcg gacggcgctc tcatcgatcg gcgtcgacga
      721 ccgcggccgc aaagaaccga tgcgcgaagc cgtgggcggg cgatcgaatt tgccgggacc
      781 gcggttctgc tggttatgtt tgcgcttggc attggcgcaa tggcgctaca cgcacttgcg
      841 caaccgctag cgatcgctgg agcagcgctc tcgggacact agacgcaagc gtaaagcagc
      901 agcgtcgctt cagatctttc cgctagcgcc gcgctggcgc cgtgcgatca atcgccactg
      961 gcgaactact aatcaggttc tcggctgccc aacttcgcga ggcattgcga ttagaagcgt
     1021 tcagtcgcat catggccggt gcataccaga aggcgctcga ttggcatcct cgaggtacgc
     1081 acgcgttttg ggcgcaactc acggggggta ttcagggcgt gggattaagc gcgaaattca
     1141 acctcctaat gctggcggtc gccgcggtcg gtcttggatt gtttgcgctc gccgccgagc
     1201 ctctggtgaa tgccgttgcc cgcgaagaag tccttcaaag ctcaaggatc atgatggaga
     1261 gcgcggcggg cgctcgcaaa tatacgtccg agcagattgc gccaattctc aagccgcaga
     1321 tcggcgagca tttctatccg cagtccgtct cggcctatgc ggcgaagcgc aatttcgatg
     1381 tgatccatgc caagttcccg gatttcatgt accacgaagc agccttgaac ccgactaatc
     1441 cggaagatcg tgcctcggac tgggaagcgg acatcatcaa tgatttccgg tcccatcctg
     1501 aaaagaagga aatctcgctc gagcgctcga cggcgacggg gccaatgctc gagttggcgc
     1561 gaccgatcgt gaacaagccg gcatgccttg aatgccacga tacggccgcc gatgcgccaa
     1621 agtcgatgat cgcactttat ggaacgcaga acggctttgg atggaagccc caagagataa
     1681 ttggcgcgca gatcgtctcg gttccgatgt ccgcatcggc gttgcgcgcc gagcacatca
     1741 ggcggctttt cctgatacca tttctgctct tcctcgttct tcttttcgtg tccatcaata
     1801 tcctgcttca cttcgtcgtc attcggccga tgaacaaaat cgcggcaagt gcggacgccg
     1861 tcagcatggg caagatcgat gcgcccgagt accgctatgc cggacgtgat cagatcgggc
     1921 ggttagcgac ctcgttcaac cgcatgcatc gcagcctcgt cgaagcgatg aggatgctcg
     1981 gggaatgagc aatgcgcggg atgcgggcgc tcacttcctg agctactcgc gcgccgacca
     2041 ggattttgca cttcgctttg cacgcgatct tcgggccaac ggagtggcga tctgggtcga
     2101 ccaactggac atccggccga gcgagcattg ggaccgggcg attgaacggg ccgtgcgcga
     2161 ttgccggggg ctggtcgtta tcgtctcgcc ccgttctgcc gcgtccgaca atgttgctga
     2221 cgagatcagc tttgcaatcg atcatcgcaa gtccgtgctc ccggtcatga tcgagcgctg
     2281 cacgctgcca ttgcgaatag ctcggatgca ggtaatcgac gcaacggtcg actacacgcg
     2341 cgcccttcag cagtgcgtcg aggtgatttc gtcaggagca gtaagctcga cgggagacga
     2401 aggcagcgcg agtccactgg gaatccacga cccgcagatc atcattgcgg caaagaagga
     2461 tctgacggcc attcttggac ctgttgcggc gatcgtcgtg gacaaggaag ctcgcaaggc
     2521 ccgttctctc gatgatttct accgtcgtct ctccgagcac atccccgagg ggccgcatcg
     2581 cgagcgcttc acaagatcga cgcaagcgaa tgttgttcag ccagcacccg cgcaaccaag
     2641 cggcgagata cccgcaagtg gcgcgccact ttccatcgat gctgctgaac ttgaccgcct
     2701 tggttcgatc ctgacgcact atctggggcc gattgcaacg gtcattgcaa ggcgcgaagg
     2761 cgccgaggcc cagtcgctcg acgatcttca gcagcgactt gcctcgaaaa tcccggatga
     2821 gcgtcagcgc gtcgagctgc ttgagcggct tcggcagcgt tagcccttaa aagaagaaaa
     2881 aatcgcgaaa agagtcttcg tccgatggat tgccgctttt tgaacgtgat cggggcttct
     2941 cacgaaaggc gctcgtccct aagtcggcgc cttcatgcaa tttaccatcg ttccccattc
     3001 cgagggtgac ggcttccgct tcgacatcgg cgccgacggc cgctcgcaaa cctatctagt
     3061 ccccactgca acgcagcagg atttcagcct gttcttccgc gcgcttgcgg gcgattttgg
     3121 aacgcgtatt ccgcacgttt ttacaaggtc atccgattat ccgcccgcgc cattcccgtg
     3181 gcggccgctc ctgacggaga atgtccaccc gaggattctc gttggctatg gcgatcccgc
     3241 ggttctgaag actgacgaag gctggtggct cgtcgcaacc tccaatgatg cacccgatgc
     3301 ctttcccata cttcactcgg ccgatcttaa aaaatgggag ccaaaaggct tcatcttccc
     3361 ttcgggccaa gagccttcgt ggacggcgac cggacggaac acggcggact tctgggcgcc
     3421 cgagatggcg aaggtcggcg acgaatattg gaccgtattt actgctcgac agcgaacgaa
     3481 cgcgcttgcc atcgggcttg cgcgggctcc ttcaccactc ggcccatgga tcgacaacgg
     3541 cgttccacta atcaccggca aaccggtgaa cacgacgggg cttgggtttg atgcgaccca
     3601 gccactcatg agtggtggcg tgatcgattc gcacctcttc ctagacgcga acggcgagcg
     3661 ctatcttttc tggaaagacg atacgaacgg tatctggcca cgaccactcg caatgcttct
     3721 gaggcagcat ccggcgctca tcgacgagct tttcgacgat ggacgcgacc gccggacggc
     3781 tgcctttgcg gcagcgatcg tcgattgggc aaatcggcaa cggccaatga cgcgtttctt
     3841 cgtgatgcag ccactgattg aggcagcgct cgacaattgg cagaaagtgc gcgtcatatt
     3901 ggcggagttt ggtctcgctg cggcaacgat cgtcgaagca atgacgaccc cgatccgcgc
     3961 gcagcgcatt tcagatgatg gccgctcgct cgttggagag gacaccatcg tacttaagaa
     4021 cgacgaggat tgggaaggac atctgatcga gggaccgttc gtcacctatc aacaggatcg
     4081 ctactggctg ttctacgccg gcaatgactt ttctacgcct gcctatggca tcggggttgc
     4141 ggtcgcggat catccgctcg gtccctatac caagcaggga gcaccaatac ttaaatccac
     4201 gcgcgaatgg gtggctcctg gtcacgcctc tgttgcgccg gggccaaatg gcggcccgca
     4261 gctgttcttc cacgccttcc atcccggcac gggcgggtac aatgcgtttc gagcgc
//
LOCUS       DASRBJ010000342         6421 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_296568,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000342 DASRBJ010000000
VERSION     DASRBJ010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6421
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296568"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..489)
                     /locus_tag="VE968_09435"
     CDS             complement(<1..489)
                     /locus_tag="VE968_09435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003044099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52082.1"
                     /translation="MSEQQTTASVGHAPAPDAGEPTFLGLNPGGWVALAMLVVFAILI
                     WKKVPGAIGRALDSKIELIRNQLAEAESLRKEAEALKAEYEAKSASAEKDRQALLERA
                     QHEAGEIVAKAKTDAEALIERRSRMAEEKIAAEERAAIEQLRAAAAEAATRAAARLIA
                     ERH"
     gene            complement(482..973)
                     /locus_tag="VE968_09440"
     CDS             complement(482..973)
                     /locus_tag="VE968_09440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007685360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HZU52083.1"
                     /translation="MPQLSQLSQVYLSQFLWLAIALGFIFFVIARGMVPKIQATVEQR
                     EAKISSDLEAAQKARAAADETEAQWRARMDSARSEAARLAQEAKAESSRETEARVKAA
                     ADKINLKISAAENQLREAVNAAQSEIEAVAADATREMVARLTGMDVNLDDAAAAVKAE
                     FNV"
     gene            complement(1007..1234)
                     /locus_tag="VE968_09445"
     CDS             complement(1007..1234)
                     /locus_tag="VE968_09445"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017665361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HZU52084.1"
                     /translation="MDVASAKLIGAGLAAIGVGAAAAGVGFVFGSFLQSAIRNPAASD
                     GQQGRLYIGFAAAELLGLMAFVVAMLILFAF"
     gene            complement(1264..2016)
                     /locus_tag="VE968_09450"
     CDS             complement(1264..2016)
                     /locus_tag="VE968_09450"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006832364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HZU52085.1"
                     /translation="MHQFVIEPIFGSFQGHNPFVFTNSALWTLIVLGTIWVFMFGGMK
                     RELIPGRWQLAVEGLIAFVDDMVNVSIGADGKKYLPWVFTAFIFLLFANLMGNMPFGV
                     VAAAHPFTVTSQFTFTGIMSLITFAIVLGVGFWKHGLHFFSLFVPKDAPLVFKFAIAP
                     IEFMSFLVRPFSLGLRPFIAMFAGHVLLDVFGNFVVQALNSHSAGGIGISILCFFFIM
                     FVSMIELLVAAIQAYVFAILTSLYISEAVNLH"
     gene            complement(2053..2472)
                     /locus_tag="VE968_09455"
     CDS             complement(2053..2472)
                     /locus_tag="VE968_09455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HZU52086.1"
                     /translation="MAVLVFRHVPRPWLAPGEMPRGDAQGRDMADDDTDEVPKLSPDA
                     RLESLDQRLDRLQQAEAKRTAKRQPDQSYQAGQLVLSQLVGCPLGGGIVGWLLDHWLG
                     TRPWLMLVMLFVGFAVGIWNVIRISNNSRSSAPIERE"
     gene            complement(2528..2896)
                     /locus_tag="VE968_09460"
     CDS             complement(2528..2896)
                     /locus_tag="VE968_09460"
                     /inference="COORDINATES: protein motif:HMM:NF018701.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbL family protein"
                     /protein_id="HZU52087.1"
                     /translation="MRIGLGVAAALAATASAGLAQSSQLSAAIASGQVGERYDGYMGF
                     ASPPPDALRREVIGINIRRRSLYTGLAEQRGVTTQLVGLTAACALFRELPSGEAYMLA
                     DNRWRRRTAGGTAPLPEHCR"
     gene            complement(2893..3099)
                     /locus_tag="VE968_09465"
     CDS             complement(2893..3099)
                     /locus_tag="VE968_09465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006961957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HZU52088.1"
                     /translation="MKRTRMAVAVAVALPLAGCITVRPPDKPIEVNLNVNIKQEVLVR
                     LQQDVQQMIQKNPQAFPPPPTKQP"
     gene            complement(3111..6353)
                     /locus_tag="VE968_09470"
     CDS             complement(3111..6353)
                     /locus_tag="VE968_09470"
                     /inference="COORDINATES: protein motif:HMM:NF023167.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH domain-containing protein"
                     /protein_id="HZU52089.1"
                     /translation="MNERRRDEATGAPEPAHATIVRRRAPLWARAASVLAIAILLLLF
                     AAIIIIWIQRRPIATHYLRGEFARRGVTASYHLDRVGLRTQEVSNLVIGDPKRPDLVA
                     RFARIETRLRWNGNFDVYRIVARGVRLRGRLMHGRVSWGQIDKLMPPPSNKPFALPNF
                     ALDVADSSIALVTPFGPLGIAVDGNGKLSGGFKGHAAIVSPRLIPGRCAAVGLRATLA
                     IGVVARKPQVAGPVALDQFTCPLSRFDVASPRFDAKASFNESFSNVNGSGRMAIATLT
                     AGANGLADFAGTITYKGWLNDVDGRVNLAAQRSRMATVTAQRTGLNGRYHLGIANGTF
                     SLAGGFAVDDSTLDPKMLDSVTEPLAAAASTPVGAVVASISNAIGRTASRFSASGQIK
                     VVNFPGGGAARITRANVNAPSGARAMIAGGTGITYYWPAGGLRVDSTINMAGGGLPQG
                     RVTLHQPRAGAPMSGVAEIAPYAAGGQRLSLSPVVFGPGPAGSTALSTTAELDGLFPG
                     GRVQALRLPIAGRIGPGGGFAFGTSCAVVSFEYLQTGTLQLGPARLPVCPLGPAIIFK
                     RPGTQAIASAQITNPILNGKLGSSPLHIEAAHGEFAGKQFMFDRLAAQLGHSTSPVLI
                     DAAHFTGSFANYLHGEFKGGRASIGKVPLILSDAVGSWLYRNKILSVRSALTLSDRDP
                     NPRFYPLHSDNVRFTLAGNEIRATGDLRHPASGTLVTSVQIQHHLKSGSGSALLDVPG
                     LTFGPNLQPEQLTRLTEGVVALVNGTVAGRGRIDWAEGGKVTSTGDFSTRNMNLAAPF
                     GPVTGLTTSVHFDDLLGLSTPSGQVMTVATVNPGISVSDGVIRYQLLPHNRVKIERGE
                     WPFMGGKLVLDETTLDFSHHAPKQLTFELEGFYAKMFVDSLGFAGFSLSGTFDGKLPM
                     VFDENGGRIVGGVLTSRPPGGELKYSGTKPGGLVGGLAFDLLSDIRYRSMVIRLDGDL
                     SGEFATRLTIDQVSLGPGHGIVASLVHRAFRKLPLKLNVNINGPFRALIQMAKSFKDP
                     TEVIAPVMPFPIDSPALKVDVLSSTKNEQPASPPKRIPAPNQSPPPGDRK"
BASE COUNT         1294 a         1979 c         1932 g         1216 t
ORIGIN      
        1 gtgacgttcg gcaatcaacc gagcagccgc ccttgttgcc gcttccgcgg cggcggcgcg
       61 gagttgctcg atcgcggcgc gttcctcggc agcgatcttc tcctcggcca tccggctccg
      121 gcgttcgatc agcgcttcgg catcggtctt cgccttggcc acgatctcgc cggcctcgtg
      181 ctgtgcgcgc tcaagcaacg cctgacggtc cttctctgcg cttgccgact tggcttcata
      241 ttcggccttc agcgcttcgg cttccttgcg caaagactcg gcttccgcga gctgattgcg
      301 gatgagctcg atcttgctgt cgagcgcacg accaatcgcg ccaggaacct ttttccagat
      361 aaggatcgca aagacgacga gcatcgcaag tgcgacccag ccgcccggat taagcccaag
      421 gaatgtcggc tcaccggcgt cgggcgctgg ggcgtgccca acactcgcgg tagtttgctg
      481 ttcagacatt gaactcggct ttcactgctg ccgcggcatc atcgaggttc acatccatgc
      541 ccgtcagacg ggcaaccatc tcgcgggtcg catcggcggc aaccgcttcg atctcgctct
      601 gcgcggcgtt caccgcttcg cgcagctgat tctccgctgc gctgatcttg aggttgatct
      661 tgtcggccgc agccttcacg cgcgcctctg tttcgcggct gctttctgcc ttcgcttcct
      721 gggcaaggcg tgcggcttcc gaacgcgccg aatccatccg cgcgcgccat tgcgcttcgg
      781 tttcatcggc ggcggcgcgc gctttctgag cggcctcgag atcactcgag atcttcgctt
      841 cgcgctgttc gaccgttgcc tggattttgg gcaccatgcc gcgcgcgatc acgaagaaga
      901 tgaacccaag cgcgattgcc agccacagaa actgtgacag gtagacttgg gagagctgcg
      961 agagttgtgg catcgtggct ccttcaggag cttgtccgct attggattag aaagcgaaca
     1021 ggatgagcat cgcaacgaca aacgccatca ggccgagaag ctcggctgcg gcgaacccga
     1081 tgtagagacg gccctgctga ccgtccgatg ccgccggatt gcggattgcg ctctggagaa
     1141 acgatccgaa cacgaaaccg acgcccgctg ctgcggcgcc gacgccaatt gccgcgagac
     1201 ccgcaccaat aagctttgca gaagcgacat ccattgattg aactcctttg aaaaatcagt
     1261 tggttagtga agattgacgg cttcgctgat gtagagcgaa gtcagaattg cgaagacgta
     1321 agcctggatt gccgcgacga gcagctcgat catgctgacg aacatgatga agaagaagca
     1381 caggatcgag attccgatgc cgccggcgct gtggctgtta agcgcctgca cgacgaaatt
     1441 accaaacacg tcgagaagga cgtggcccgc aaacatcgca atgaacggcc gcaacccgag
     1501 gctgaagggg cgaaccagga agctcatgaa ctcgatcggc gcgattgcga acttgaacac
     1561 aagcggagca tctttcggca cgaacagcga aaagaagtgc aacccgtgtt tccaaaaacc
     1621 aacgccgagc acgatcgcga aggtgatcag tgacatgatg ccggtgaagg tgaactggct
     1681 ggtgaccgta aacggatgcg ccgcggcaac aacgccaaat ggcatgttgc ccatgagatt
     1741 tgcaaacagc aggaagatga aggccgtgaa gacccacggc aggtatttct tgccgtctgc
     1801 tccaatgctg acgttcacca tgtcgtcgac aaaggcgatc aatccctcga cggcaagctg
     1861 ccatcggccg gggatcagtt cgcgcttcat tccgccgaac atgaaaaccc agatcgtccc
     1921 gagcacgatc aaggtccaaa gcgcgctatt ggtgaagacg aacggattat gcccttggaa
     1981 cgaaccgaaa atcggctcga tcacgaactg gtgcatcggg tcgatcttgc cgcttgcggc
     2041 cactttgctt ccctattctc gttcgatcgg agcactgctc cgggaattgt ttgaaatccg
     2101 aatgacgttc cagatgccga ccgcgaaacc gacgaacagc atcaccaaca tcaaccaggg
     2161 cctcgtgccg agccagtgat ccagcaacca gccgacaatg ccgccgccga gcggacagcc
     2221 caccagctgg ctgagaacca attggccggc ctggtagctt tgatcgggct ggcgtttcgc
     2281 ggtccttttg gcctccgcct gttgcaaacg atcgagccgc tgatcgagcg attcgagccg
     2341 tgcgtcgggt gaaagcttcg gaacctcgtc ggtatcatcg tccgccatgt ctctcccctg
     2401 tgcgtcgccc ctcggcattt caccaggagc cagccaggga cgaggaacat ggcggaacac
     2461 caataccgcc aaggcgccgc ccctttatga atggggcgcc acatagtcaa ccacgcgcaa
     2521 ggtcagctca gcgacagtgt tccggtagcg gcgccgtgcc gccggccgtg cgacgacgcc
     2581 agcgattgtc ggcgagcata taggcttcgc cgctcggcag ctcacgaaac aacgcacaag
     2641 cggcggtaag tccaacaagc tgcgtcgtaa cgcctcgctg ctccgcaagc cccgtataaa
     2701 gactgcgcct tcgaatattt atcccgatca cttcacggcg aagagcatcc ggcggcggcg
     2761 aagcaaagcc catgtatccg tcataccgtt ctcccacctg cccgctcgca attgcagccg
     2821 acaattgcga ggactgggcc agccccgccg aggcggtggc ggcgagcgcc gcggccacgc
     2881 caagcccgat tctcatggct gcttcgttgg cggcggcggg aatgcctgcg gatttttctg
     2941 aatcatctgc tggacgtcct gttgcagtcg aacgagcact tcctgcttga tgttgacgtt
     3001 gagattgact tcgatcggct tgtccggcgg ccggaccgta atgcatccgg caagcggcaa
     3061 cgccacggcg acggccactg ccatcctggt ccttttcatc gtctcgatct tcacttccta
     3121 tctcccggcg gtggcgactg attgggagcc ggtatgcgct tgggcgggct tgccggctgt
     3181 tcgttcttag tcgagctcag aacgtcgacc ttaagagcgg gcgaatcgat cgggaatggc
     3241 atcacgggag caatcacctc ggtcggatcc ttgaatgatt tcgccatctg gatcagcgct
     3301 cggaagggcc cgttgatgtt cacattgagt ttcaacggaa gcttgcggaa cgcccggtgc
     3361 acgaggcttg caacgatacc gtgtcctggc cccagcgaaa cctggtcaat ggtaagccgg
     3421 gttgcgaact cgccggaaag atcgccatcg aggcggatga ccatcgaacg atagcggata
     3481 tcgctcagga gatcgaaggc gagaccgccg acgagcccgc caggcttcgt gccactatat
     3541 ttgagctcgc cgccaggcgg ccgcgaagtc agtactccgc cgacaatcct gccgccattc
     3601 tcgtcgaaca ccatcggcag cttgccgtcg aatgtgcccg acaggctgaa gccggcgaaa
     3661 ccgaggctgt cgacgaacat cttggcgtag aaaccttcga gttcgaacgt cagctgcttg
     3721 ggagcatggt ggctgaaatc gagagtagtt tcgtcgagga cgagcttgcc gcccatgaaa
     3781 ggccactcgc cacgctcgat cttgacccgg ttgtggggaa gcagctggta acgaatgacg
     3841 ccgtcgctga cggaaattcc ggggttcacg gtagccacgg tcatgacttg tccggagggt
     3901 gttgagagac cgagcagatc atcgaaatgg acgctcgtgg taagccccgt cactggacca
     3961 aagggcgcgg caagattcat gttcctggtc gagaaatcac cggttgacgt gaccttcccc
     4021 ccttccgccc agtctattcg acctcttcca gcaacggtgc cgttgacgag cgcaacaacg
     4081 ccctcggtga ggcgggtcag ttgttccggc tgaagattgg gaccgaacgt aaggcccgga
     4141 acgtccaaga gcgcggagcc cgaccccgac ttgaggtggt gctgaatttg gacgctcgtc
     4201 acgagcgttc cagacgcggg gtgacgtaag tcacccgttg cacgtatctc gttacctgcg
     4261 agcgtgaagc gcacattatc gctgtgcaat gggtagaaac gcggattggg atcacggtcg
     4321 gacaaggtga gcgcgcttct caccgacaat atcttgttac gataaagcca gctcccaacg
     4381 gcatcgctga ggatcagcgg caccttgcca atcgacgctc ggccaccctt gaattcgccg
     4441 tggaggtagt ttgcaaaact gccggtgaaa tgcgcggcat cgatgagaac tggcgacgtc
     4501 gaatggccca attgcgccgc aaggcggtcg aacatgaact gcttgccagc gaattcaccg
     4561 tgcgccgcct cgatgtgcag gggtgaactg ccaagctttc cattgagaat tggattagtg
     4621 atctgcgcgc ttgcgatcgc ctgggtcccg ggcctcttga aaatgatcgc ggggccaagc
     4681 ggacagaccg gcaggcgcgc ggggccaagt tgaagcgttc cggtttgcaa atattcgaaa
     4741 ctcacgaccg cgcatgacgt accgaacgcg aacccgccgc cggggccaat gcggcccgcg
     4801 attggcagtc tcagtgcctg aacgcgcccg ccggggaaga gaccgtcaag ctcagccgtc
     4861 gtgctgagcg ccgttgaccc ggcggggccc ggcccgaaga cgacgggcga caagctaagg
     4921 cgctgtccgc ctgccgcata aggcgcaatt tcggcaacgc cgctcattgg cgcacccgct
     4981 cgcggctggt gaagggtcac gcggccctgc ggcaggccgc caccggccat gttgatcgtg
     5041 ctgtcgaccc ttaagccgcc agcaggccaa taataagtaa tgccggtacc gccagcgatc
     5101 atcgcgcgcg caccgctcgg cgcgttcacg tttgcacgcg tgattcgggc agcgccgccg
     5161 ccggggaagt tcacgacctt gatttggccg gatgcgctga agcggctcgc cgtgcggcca
     5221 atcgcgttgc tgatgcttgc gaccaccgca ccaaccgggg tgcttgcggc cgcggcaagc
     5281 ggctccgtga cgctgtcgag catcttcgga tcgagcgttg aatcgtcgac cgcgaacccg
     5341 cctgcaagcg agaaggtccc attcgcaatg ccaagatgat atcggccgtt aagcccggtt
     5401 cgctgggcgg taacggtcgc catcctcgat cgctgtgcag cgagattcac gcggccgtcg
     5461 acgtcattca gccatccctt gtacgtaatt gtgccggcga agtcggcaag tccgttggct
     5521 cctgctgtca acgtagcgat cgccatccgc ccactgccgt tcacgttgct gaaggattcg
     5581 ttgaaactcg ccttcgcgtc gaaccgcggt gaagcgacgt caaatcgact tagcggacag
     5641 gtgaattggt cgagagccac cgggcccgcg acctggggct tgcgcgcgac aacgccgatc
     5701 gcgagcgttg cgcgtaggcc aacggcggcg cagcgacccg ggatcagcct tggactgacg
     5761 atagcagcgt gccccttgaa cccaccgcta agcttgccat ttccatcgac cgcaatgcca
     5821 agcggtccga agggcgttac aagcgcaatg ctgctgtccg cgacgtcgag tgcgaaattg
     5881 ggtagtgcaa acggcttgtt gctgggcggc ggcatcagct tgtcgatctg cccccagctg
     5941 acccgcccat gcatcagccg ccctcgcaat cgaaccccgc gcgcaacgat ccggtaaaca
     6001 tcgaagttgc cgttccatct aagtcgagtc tcgatgcgcg caaatcgcgc aacaaggtct
     6061 ggacgtttgg gatcaccaat cacgagattg ctgacttcct gcgtccgcag cccgacgcgg
     6121 tcgagatgat agctggccgt cacgccgcgc cgcgcgaact cgcctcttag atagtgggtc
     6181 gcgatgggac ggcgctggat ccagatgatg atgatcgcgg cgaaaaggag aaggagaatc
     6241 gcaatcgcaa ggacgcttgc agcgcgagcc cagagcggcg ctcgcctgcg cacgattgta
     6301 gcgtgcgccg gttcgggcgc gccggtcgcc tcgtctcgcc tccgctcgtt cattgggctt
     6361 tactaacaac caccgcgctt gaccgttccg atggcggcac gaaccgcagg cgattgccaa
     6421 a
//
LOCUS       DASRBJ010000343         5323 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_758911,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000343 DASRBJ010000000
VERSION     DASRBJ010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 5323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5323
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_758911"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..698
                     /locus_tag="VE968_09475"
     CDS             162..698
                     /locus_tag="VE968_09475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52090.1"
                     /translation="MNQLVGTLAVAALIVSGAAAQSKERPTAPSSTLVSAIDHCRHIT
                     DPTQRLACYDSAANALVTATSSGEVSVVDRNDVRKVRHSLFGFSLPKVPFFSGDTTAN
                     EAQNKLDSTIVSVRQLANGYFRIGIADNNAVWETTDSSISLSPPEPGQKIEIVRGALG
                     NYFIRINGQIGVRGKRVG"
     gene            complement(695..904)
                     /locus_tag="VE968_09480"
     CDS             complement(695..904)
                     /locus_tag="VE968_09480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2093 domain-containing protein"
                     /protein_id="HZU52091.1"
                     /translation="MLMTGSGRAARIHYLAGTFRLLSDGDHVVCAVTGARIPLHELKY
                     WSVERQEPYVDAEASFKAEQARRHD"
     gene            complement(909..2297)
                     /gene="xseA"
                     /locus_tag="VE968_09485"
     CDS             complement(909..2297)
                     /gene="xseA"
                     /locus_tag="VE968_09485"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HZU52092.1"
                     /translation="MELPDETQSNLLANVIRGDNSPALTVSELSGALKRTIESAFGQV
                     RVRGEISGFKRHSSGHCYFSLKDESACMDAVIWRTSAAVLAFRPEDGAEVIATGKLTT
                     YPGRSKYQIVVERMELAGEGALLALLEKRRKALAAEGLFDPQRKRKLPFLPRVIGVIT
                     SPTGAVIRDILHRLEDRCPTRVILWPVPVQGEGASAKIASAIRSFGSLEPKPDLLIVA
                     RGGGSIEDLWAFNEEEVVRAAADCTIPLISAVGHETDTTLIDFASDLRAPTPTAAAEI
                     AVPVRTELFNQLTELQHRVHHCLSRRIDRSRERFDLTICRWPEPEAIFAPVMQRLDEV
                     SERLPRSLAARAATARADMNLVTGRLRRELIDQRIVHLRERLGAAWKMAELVHPERPL
                     SKGYVRVTSRGGKTLTSSSEARIEQRLSLHFGDGTLDAAVDAPTSSKAVERKRSKPYI
                     APQPGLFDPAEE"
     gene            2297..3556
                     /gene="purD"
                     /locus_tag="VE968_09490"
     CDS             2297..3556
                     /gene="purD"
                     /locus_tag="VE968_09490"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010337514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HZU52093.1"
                     /translation="MNILLLGSGGREDALAWRLRQSPSCDKLYAAPGNPGIARWAECL
                     SIDPCDARAVLDIAQRNKVGLVVIGPEAPLVSGVADVLRKEGIAVFGPSAAAAQLEGS
                     KGFTKDLCRENAIPTADYIRVTTAADARAAIDRFSLPVVIKADGLAAGKGVTVAFTRA
                     EAEAAIEACGEAPLVLEEFLAGEEASLFALVDGLIAVPLGSAQDHKRVGEGDTGPNTG
                     GMGAYAPAPVLTSDLQERAMDEIIRPTARAMVQAGTPFSGVLYAGLMLTAEGPKLIEY
                     NVRFGDPECEALMPLVAGDFGDLLYAVATGRLAELDPPQLLPQHSVTVVIAARGYPGE
                     PARGGPIHNIETAERVAGVRVFQAGTAIRDGVLIANGGRVLAVTAVADSFATARARAY
                     CAVDEIDFPDGFHRRDIGWRQLERESR"
     gene            3553..4053
                     /locus_tag="VE968_09495"
     CDS             3553..4053
                     /locus_tag="VE968_09495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52094.1"
                     /translation="MNALWVYFWPCFAAGLISGGACGTVAFRRRRKRNKALAAGILIA
                     IVLAVIWHGPLGGANRFEAKVQRGVDETLTYYEMTQVSGHLHHDPLTRKVLLSGPADD
                     FQRSELVRLMNQVPGVEDTSWSPSSGGTPLIVEGAIVAVLGFLLGLLLAYLVELRRRY
                     NSQWNW"
     gene            4061..4549
                     /locus_tag="VE968_09500"
     CDS             4061..4549
                     /locus_tag="VE968_09500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52095.1"
                     /translation="MDLIREYWWLIVAILVLVLAFILLRPKQRVQLTDSAPVRPHMAQ
                     AKRPPEGRGIAGEAAAAASDLTGDILRAPVHSTLEGSESPGDDLCRLKGVGPKFADSL
                     RAIGFRRFDQIARLSPPEIERVDAQLGAFKGRLVRDRIVEQADYLARNDIDGFEQRFG
                     KL"
     gene            complement(4546..>5323)
                     /locus_tag="VE968_09505"
     CDS             complement(4546..>5323)
                     /locus_tag="VE968_09505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HZU52096.1"
                     /translation="HLVVAEAQTAGVLEEEERAMISGIVRLADRPVREVMTPRTEIDW
                     IDIGASEEEVRQALLETPHNRIPVADGAVEKIVGVIQTRDVLAASLEGRQIDLRQLCR
                     TAPVIPDLMDAMDALAVLRTADVPLALVHDEYGHLDGIVTPGSILAALAGTFASDVDD
                     SDDPALVERDDGSFLLSGAASADLLTDRLGVKLPDDRDYSTVAGFALSVLKHLPDTGE
                     KFRHDGWSFEIVDMDGRKIDKLIAARPRKKPVGAEAAAAN"
BASE COUNT         1050 a         1588 c         1597 g         1088 t
ORIGIN      
        1 gacgctgatg cggtagttcc taagtgtaac agctaggacg aatcaatcgg agcgacgcgc
       61 gcacgactaa atcgtaacgc ctatgttgca tttggggcac aggttgcttt cgcgacaaag
      121 atgcgcacga cattggatcg gtcttgagcg ggagatcagg aatgaaccaa ctcgtcggca
      181 ccttggccgt cgctgcccta atagtatcgg gtgcggccgc tcaatcgaaa gaacggccga
      241 ccgcgccttc atcaacgctt gtgtccgcga tcgaccactg ccgccacatc actgatccga
      301 cgcagcggct cgcctgctat gattcggccg cgaatgcgct ggttactgcg acgtcctccg
      361 gagaagtgag cgttgtggat cgcaacgatg ttcgcaaagt gcggcactca ctgtttggat
      421 tcagcctacc aaaagtgcca ttcttttccg gagacacaac cgcgaacgaa gcgcagaaca
      481 agctcgattc aacaatcgtc tcggtacggc agcttgcaaa cggctatttt cgaatcggga
      541 ttgcggacaa caatgccgtt tgggaaacga ccgatagcag catatctctg tcgcctcccg
      601 agccagggca gaagatcgag atcgttcgag gagcgctcgg caattacttc atccgtatca
      661 atggccaaat cggcgtgcgc ggaaagaggg tcggctagtc gtgcctgcgc gcttgttctg
      721 ccttaaaact tgcctcggca tcgacatagg gttcctggcg ctcgacgctc caatatttca
      781 gttcgtgaag cggaatcctt gcaccagtga ccgcgcagac gacgtgatct ccatcgctta
      841 acagccggaa ggtaccggca agatagtgaa tgcgcgcagc tctgccgctg ccagtcatca
      901 acatttgtct attcctcggc tgggtcgaac agtcccggct gcggcgcaat gtatggcttg
      961 gaccgcttgc gctcaaccgc tttggatgaa gtcggagcat ctactgcagc gtccaacgtt
     1021 ccatcgccga aatgaaggct tagtcgttgt tcgatccgtg cctcggaaga actcgtgagc
     1081 gttttgccac cacggctcgt cacgcgcaca taacctttcg atagcggccg ctcagggtgc
     1141 accagttcag ccattttcca tgccgcgccg agccgttctc ttaggtgcac aatccgctga
     1201 tcgataagct cccgacgaag gcgtccggtc accaggttca tgtcggctcg agcggttgca
     1261 gcacgcgccg caagcgagcg gggcagccgt tcgctcacct cgtcaaggcg ctgcatgact
     1321 ggagcgaaga tagcctcagg ttcaggccat cggcagatgg tgaggtcaaa gcgctcgcga
     1381 cttcgatcaa tccgccgcga caaacaatgg tggacgcggt gctggagctc agtcagctga
     1441 ttgaacagct cggttctcac tggcacggca atttctgcag ctgcggtagg cgtcggggcg
     1501 cgaaggtccg aagcaaagtc aatgagcgtc gtgtcggtct cgtgcccgac cgcggaaatg
     1561 agcgggatcg tacagtctgc ggcggcgcgc acaacttcct cctcgttgaa tgcccagagg
     1621 tcctcaatcg agcccccgcc ccgcgcaacg atcagcagat ccggcttcgg ctcgagcgac
     1681 ccaaacgatc gaattgcact tgcaatcttc gcggaggctc cttcgccctg gactggaact
     1741 ggccacaata tgacccgcgt tggacagcgg tcctcgagcc gatgaagtat gtctcgaatg
     1801 accgcgccgg tcggcgacgt aatcacgccg atgacccgtg gcaggaatgg cagcttgcgc
     1861 ttcctttgtg gatcgaaaag cccttccgca gccaacgcct tgcgacgctt ctcaagcaag
     1921 gcgaggagcg cgccctcgcc ggcaagttcc attcgctcga cgacgatctg gtattttgat
     1981 cggccaggat acgttgttag cttgccagtt gctatgacct ccgcaccgtc ctcgggacgg
     2041 aacgcaagga ctgcggcgct ggtgcgccag atcaccgcat ccatgcaggc gctctcgtcc
     2101 ttcaggctga agtaacaatg acccgacgag tggcgcttga acccgctgat ctcccctcgg
     2161 acacgcactt ggccgaaggc gctttcaatg gtccgcttca aggcacccga gagctccgat
     2221 accgtcagcg ctggcgaatt gtcgccgcga atgacgttcg ctaacaggtt gctctgcgtc
     2281 tcgtcgggga gttccattga atattctgct tctgggctct ggcggtcgcg aggacgcgct
     2341 ggcttggcgc cttcgacaat cgccgagctg tgataagctc tatgccgccc ctggcaatcc
     2401 cggaatcgct cggtgggccg aatgcctaag catcgatcct tgtgacgcgc gtgcagtgct
     2461 ggacattgcc caacgaaata aggtcgggct cgtagtcatt ggtccggaag cgccgctcgt
     2521 ctccggcgtt gcggacgtac ttaggaaaga aggcattgcc gtctttgggc cgagcgcggc
     2581 cgccgcgcag ctcgaaggga gcaagggatt taccaaggac ctgtgtcggg aaaacgccat
     2641 tccgacagca gactatattc gagtgaccac cgctgccgat gcacgcgcag cgatcgaccg
     2701 gttcagtttg cccgtcgtca taaaggccga cggacttgcc gccggcaagg gagttacggt
     2761 cgcgttcacc cgcgccgagg ccgaagcggc gattgaggca tgcggcgagg cgccgctggt
     2821 gcttgaagag tttctcgccg gcgaggaagc cagtctcttt gctctcgtcg acgggctgat
     2881 cgccgttccc ttgggatcag cgcaagatca caaacgcgtc ggtgaaggcg ataccggtcc
     2941 gaacaccggg ggcatgggag cctatgcccc agcaccagtg ctgaccagcg acctccaaga
     3001 gcgcgcaatg gacgaaatca tccgtccaac ggcgagggca atggtgcaag cgggaacgcc
     3061 cttcagcggc gtgctttatg cggggctgat gcttacggcc gagggaccca agctcatcga
     3121 atataatgtt cgtttcggtg accccgagtg cgaagccctg atgcctctgg tcgccggcga
     3181 ttttggtgat cttttatatg ctgtcgcaac gggccgtctc gccgaactcg atccgccaca
     3241 actactaccg cagcacagcg tcacggtcgt cattgccgca cgcggctatc ccggcgaacc
     3301 cgcgcggggc ggtcccatcc acaacatcga gaccgccgaa cgcgtcgcgg gtgtgcgagt
     3361 tttccaggcg ggaacagcca ttcgcgacgg cgtgctaatt gcaaatggcg ggcgcgtgct
     3421 tgcagtgacc gcagtcgctg acagcttcgc cacggcgcgc gcaagagctt attgcgcggt
     3481 cgatgagatt gactttcccg atgggttcca ccgacgggac atcggttggc gtcaattgga
     3541 gcgggaaagc cggtgaacgc gctttgggtt tatttctggc cgtgcttcgc ggcaggtctc
     3601 atttcaggcg gtgcttgcgg cacggttgcg tttcgccgac gaagaaagcg gaacaaggcg
     3661 ctcgctgccg gaatcctcat tgctatcgtt ctcgcggtga tttggcatgg gccactcggg
     3721 ggcgccaacc gattcgaggc gaaggttcag cgtggtgtcg acgagaccct tacttattat
     3781 gagatgacgc aggtttccgg gcaccttcac cacgatccac tgacgcgcaa ggtgcttctc
     3841 tccggacctg ccgacgattt ccaacgaagc gaactcgttc gcctcatgaa ccaggtgcct
     3901 ggggtcgaag acacgagctg gtcgccgtcg agcggaggta ctcccttgat cgtcgaaggc
     3961 gcgatagtgg ccgtgctggg ctttctttta gggctattgc tcgcctatct ggtcgagctt
     4021 cgccgtcgct acaactctca atggaattgg tgaaaaacga atggatttga tccgcgaata
     4081 ttggtggctg attgtcgcca tccttgtgct ggtgttggcg ttcatactcc ttcgacccaa
     4141 gcaacgggtt caattgaccg acagcgcgcc agttcgcccg cacatggcac aagcaaagcg
     4201 cccgccagaa ggacggggga tcgccggcga agcggcagct gcagcaagcg atctcactgg
     4261 agatatcctg cgtgctcccg tccacagcac tcttgagggc agcgaaagtc ccggtgacga
     4321 cttgtgccgt ttaaaggggg ttggaccaaa gttcgcggat tcgctgcggg caatcggttt
     4381 tcgccgcttc gaccagatcg ctcggctaag tccaccggag attgagcgcg tcgacgccca
     4441 gctcggcgcg ttcaagggcc ggcttgtccg cgatcggatc gttgagcagg cagactatct
     4501 cgcgcgcaat gatatcgacg gctttgaaca gaggttcggc aagctctagt ttgctgcggc
     4561 cgcttcagcg ccaacgggct tctttcttgg acgtgcggca ataagcttgt cgatcttccg
     4621 cccgtccatg tcgacgatct caaacgacca tccgtcgtgc cggaactttt cgcccgtgtc
     4681 gggcaggtgc ttgagaacgg ataacgcaaa acccgccacg gtcgaatagt cccgatcgtc
     4741 aggaagcttt acgccaagcc gatcggtcaa aagatcagca ctggcggctc cggacaggag
     4801 aaagcttcca tcgtctcttt cgacaagcgc cggatcgtcg ctgtcgtcga cgtcgcttgc
     4861 gaaggtaccg gcgagcgccg caagaatgct tccgggcgtc acgatgccgt caagatgccc
     4921 gtattcgtca tgaacaagcg cgagcggcac gtcggcggtt cgaagaacgg ccagtgcgtc
     4981 catggcgtcc atgagatcgg ggatcaccgg tgctgttcgg cagagctgcc tcagatcgat
     5041 ttgtcgacct tcgagcgaag ctgccaagac atcgcgggtc tggatgacgc ccacgatctt
     5101 ttcaacggcg ccgtctgcaa ccggaatccg gttgtgcggc gtctcgagca gcgcttgacg
     5161 cacttcctcc tcacttgcgc caatgtcgat ccagtcgatc tcggtccgtg gagtcatgac
     5221 ctcgcgcacc ggacggtcag caagacggac aatccccgag atcatcgccc tttcctcctc
     5281 ttcgagtaca ccggcggttt gggcttcggc gacaacgagg tgc
//
LOCUS       DASRBJ010000344         3175 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_146942,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000344 DASRBJ010000000
VERSION     DASRBJ010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3175
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146942"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..852
                     /locus_tag="VE968_09510"
     CDS             <1..852
                     /locus_tag="VE968_09510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008066353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HZU52097.1"
                     /translation="SKRELQLVRAQRLPLAFWLGAILTAFVLLAALASVVWIPRSPTI
                     MDPDALLLPPSLQHPFGTDQFGRDVLSMVVAGTRTSLGVALSSIVIGLGLGAPLGLCA
                     AATRGGVDELIMRSSDLVFAFPSLLLAVMIGAIFGPGAIAAVIAIGIFNIPVFARVTR
                     GAALPLFERDWVLAARMAGKRRWAIAFEHVAPNLNSVVVVQATIQFSLAILAEAGLSY
                     VGLGTQPPTASWGRMLSEAQTLIGSAPWLAIFPGLAIALSVLAFNLLGDGLRDVLDPR
                     LRSEWAR"
     gene            849..2495
                     /locus_tag="VE968_09515"
     CDS             849..2495
                     /locus_tag="VE968_09515"
                     /inference="COORDINATES: protein motif:HMM:NF008453.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HZU52098.1"
                     /translation="MSLFAADKLSVSLGGRQIVHELSLHVEPGEILALVGESGSGKST
                     TILAMLDLLPIGAHVSGEISLHGKPLPIGDDRQMCRIRGKEIGFVSQEPMSALNPLMT
                     IGDQVAEVLRQHCAMSRSDARARSAEILERVAMPTAKFPLGRYPHELSGGQRQRVAIA
                     MAIAASPKVLLADEPTTALDVTTQAKMLQLLKSLVAENQMGLILVTHDLGVVAQVADR
                     VAIMRAGELVEEGEALDIFDHMKHPYSRRLFEATRHCPVREPFRGQRHEPVLKASSIV
                     RRYRGDRLSIFRRSPDHIAVNGVSFDLGRGEIVGIVGESGSGKSTLLRTLLAFDEPQA
                     GTVTIEGQPFSASRDTSEMRRNRQRIQAVFQDPKDSFDPRWRVDRIIAEPLSLLGQQV
                     QSGERQKKVSTVLERVGLSAADGQRYPHEFSGGERQRIAIARALIVEPSIIAFDEPVS
                     ALDVSIRAQILDLLVALSANSGMAYLFVSHDLSVIRSIADRILIMRGGEIVEEGFTRE
                     IFEAPAHAYTRELIAATPVIDEALKHRRATLEAHKRSNPE"
     gene            2492..>3175
                     /locus_tag="VE968_09520"
     CDS             2492..>3175
                     /locus_tag="VE968_09520"
                     /inference="COORDINATES: protein motif:HMM:NF015535.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P1 family peptidase"
                     /protein_id="HZU52099.1"
                     /translation="MNSTGIVVNRRTLLGGIAGAASSIAASAKAAQRQDKPAGPTDRR
                     GRPGPRNLITDVAGIKVGQADDPRVRTGVTVIVPEKESTAAVDVRGGGPGTRETDALN
                     AYNLVHAADAIVLSGGSVYGLAAADGVASWLGARGRGYMAVPTPGVPRSPIVPAAILF
                     DLANGGDKNWGLDPPYRSLGMKAIENASDAFALGTAGAGYGASAGSLKGGTGSASVVT
                     FDEITVGAIV"
BASE COUNT          574 a          942 c          960 g          699 t
ORIGIN      
        1 tcgaagaggg aacttcagtt agtgcgcgcg cagcggctgc cgctcgcctt ttggcttggt
       61 gcgatcttga ctgcatttgt cctgcttgcc gctcttgcat cggtcgtctg gatcccgcgc
      121 tcgccaacca taatggaccc tgacgctctt cttctgccac cctctttgca gcacccgttc
      181 gggaccgatc agtttggccg cgacgtgctt tcgatggttg tcgcgggtac gcgaacatcg
      241 cttggagttg cattgtcttc aattgtaatt ggtctcggcc taggcgctcc cctcggtctc
      301 tgtgcagcag ccactcgagg cggtgtggac gagctcatca tgcgctcctc ggacctggta
      361 tttgcttttc cctcgctcct tcttgccgtc atgatcgggg cgatatttgg ccccggggca
      421 atcgctgcgg tgatcgcgat cggcatcttc aacattcccg tctttgcacg tgttacacgc
      481 ggagcagcgt tgccactgtt tgagcgcgat tgggtgcttg ccgcgcgcat ggcgggcaag
      541 cggcgttggg cgatcgcatt cgagcacgtc gcacccaacc tcaactcggt ggttgtcgtt
      601 caagccacga tccagttttc acttgcgatc cttgctgaag cgggcctgtc gtacgtaggg
      661 cttggaacgc agccgccaac ggcaagctgg gggcgaatgc tgagcgaggc gcaaaccctc
      721 attggctcgg ctccttggct tgccatcttc ccagggctcg caatcgcact gtccgttttg
      781 gcatttaacc tcttgggtga cggtctccgc gatgtccttg acccgcgact taggagtgag
      841 tgggcacgat gagcttgttt gccgctgaca agctctcggt gtcgcttggt ggcaggcaaa
      901 tcgtgcacga gctttcgctt catgttgagc ctggcgaaat cctcgcgctt gtcggcgaat
      961 cgggctcggg caaatcgacc acgatccttg cgatgctgga cctgcttcca attggagcac
     1021 acgtatccgg cgagatttcg ctgcatggca aaccgctgcc catcggtgat gatcgtcaaa
     1081 tgtgccggat ccgtggaaaa gaaatcgggt tcgtctcgca agagccgatg tcggcgctca
     1141 atcctttaat gacgatcggc gaccaggtgg cggaagttct tcggcagcac tgcgcgatga
     1201 gccgatcgga cgcccgagcg cgctcggcag agatccttga gcgggtcgcg atgccaaccg
     1261 ccaagtttcc gctcggccgt tacccgcacg aactctccgg agggcaacgc cagagggtag
     1321 ctatcgcgat ggcaattgct gcctcgccca aggtgctcct cgccgacgag ccgaccactg
     1381 ctctcgatgt caccacccag gcaaagatgc ttcaactgct aaagtcgctt gttgccgaga
     1441 atcaaatggg gctgattctc gtcactcatg atctaggcgt ggtcgcgcag gtcgcggacc
     1501 gggttgcaat catgcgcgct ggcgaactgg tcgaagaagg cgaagcgctc gatatcttcg
     1561 accatatgaa gcatccttat tcgcgccggc tgtttgaggc gacgcgtcat tgtccggtcc
     1621 gggaaccgtt tcgcgggcaa cgtcacgagc ccgtgctcaa ggcatcatct attgtacggc
     1681 gctaccgcgg agatcgcctt tccatctttc gccgctcgcc tgatcatatt gcggtgaacg
     1741 gcgtcagttt cgatcttggt cgaggcgaga ttgtcggcat tgtgggcgag tcgggctcgg
     1801 gcaagtcaac attgcttcga acgctgcttg cgttcgatga accgcaggcg ggaaccgtca
     1861 ctatcgaggg gcagcccttt tctgcgtctc gtgacacctc cgaaatgcgg cgcaacaggc
     1921 agcgtatcca ggcggttttc caggatccga aggacagctt cgatccgcgc tggcgcgtgg
     1981 accgcatcat tgccgagccc ctttcacttc tcggccaaca ggttcaatct ggcgagcgtc
     2041 agaagaaagt atcgactgtc ctcgagcgcg tggggctttc ggcggccgat ggtcagcgat
     2101 acccgcacga attttctggc ggagagcgtc aacgcattgc gatcgctcgc gcgctgattg
     2161 tggagccatc gatcattgcg tttgacgagc cggtttctgc gctcgatgtc tccattcgag
     2221 cgcagattct tgaccttcta gtagcgctct cggcgaattc cggaatggcg tatctcttcg
     2281 tatctcacga tctttccgtc attcgctcca tcgctgatcg gatactgatc atgcgtggtg
     2341 gagaaatcgt cgaggaaggc tttacgcgag agatcttcga agcgccggcg cacgcctaca
     2401 cgcgggaact catcgcggcg acgccagtga tcgatgaggc gctgaaacat cggcgcgcca
     2461 ctctcgaagc tcacaaaagg agcaatccag aatgaacagc acgggcatcg tggtcaaccg
     2521 acgaaccctc ctcgggggca tcgctggcgc cgcatcctcg attgcggcaa gtgccaaagc
     2581 tgcccagagg caggacaaac cggcaggccc taccgaccgg cgcggaagac cagggccgcg
     2641 aaacctcatt accgacgtag cggggataaa ggtcggacag gccgatgatc caagagttcg
     2701 taccggtgtt acggtcattg tccctgagaa ggaatcaacg gcggctgtcg acgtacgcgg
     2761 cggtggccca gggacgcgcg aaaccgatgc gctcaatgcc tacaatctcg ttcacgctgc
     2821 cgacgcgatc gttctatctg gcggatccgt ttacggtcta gctgcggcag atggcgtagc
     2881 atcatggctc ggcgctcgcg ggcgcggcta catggcagtc ccgacgcccg gcgttcctcg
     2941 gtcgccgatc gttcccgccg cgatcctgtt tgatttagca aacggcggtg acaagaattg
     3001 ggggcttgat cctccctatc gctcgctcgg catgaaggcg atcgaaaatg cgtccgatgc
     3061 gttcgcgctt ggtacagcgg gagcgggcta cggcgcgagc gcaggctcac tcaagggcgg
     3121 cacgggctcg gcatccgtcg ttacattcga tgaaataacg gttggcgcca ttgtc
//
LOCUS       DASRBJ010000345         2388 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_196791,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000345 DASRBJ010000000
VERSION     DASRBJ010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2388
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196791"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            330..944
                     /gene="rpsD"
                     /locus_tag="VE968_09525"
     CDS             330..944
                     /gene="rpsD"
                     /locus_tag="VE968_09525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011414051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HZU52100.1"
                     /translation="MSKRTSAKYKLDRRMGENVFGRPKSPVNRREYGPGQHGQRRKGK
                     LSDYGIQLRAKQKLKGYYGDITEKQFKKNYTQAIAMKGDASQNLIGLLERRLDMVVYR
                     AKFAPTIWAARQLVSHGHIRVNGVKCNIASRRVNIGDVVELGSKAQEMALVIEAQSLA
                     ERDIPDYVVPDGTSRITFTRVPKLDEVPYPVRMEPNLVIEFYSR"
     gene            complement(1002..>2388)
                     /locus_tag="VE968_09530"
     CDS             complement(1002..>2388)
                     /locus_tag="VE968_09530"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HZU52101.1"
                     /translation="QVEQPEPDVGSYMSDGRGKVRLMERLATNDDRLTGKSKYFYRTA
                     TSRDWKPLTDWVESEIFQPLAIDATTNSLYVLKPLDGRKALYRVNLTDTPTTELVASN
                     AGVDIDNVIRSANGQRVIGYTYIVDKRVGVYFDPEYKALVSALAAAIPTLPIIDIERT
                     SADGNRVLVHAGSDNDPGRYFVFDKAAKNLAEIMLVRPELENKKLANVKPVSVKSPDG
                     VVIPAYLTLPPGKDPKNLPAVVLPHGGPSDRDEWGFDWLAQYMAAKGYAVLQPEYRGS
                     SGFGDTWLMQNGFKSWRTSIGDITASARWLVSEGVADPKRLAIVGWSYGGYAALQATA
                     TDPTLFKAVAAIAPVTDLAMLTKEEEDYTDSEIVARFIGSGPHIIEGSPLRHAAEIKV
                     PVLLVHGDMDMNVHSLESEKMEAALRAVGTPVEFLRYKNLDHQLEDGAARTEMLTKIG
                     ALLDRTIGHGQ"
BASE COUNT          481 a          724 c          712 g          471 t
ORIGIN      
        1 cgtgtgtgcc acgattccga aggtaatctc gatcttctcc ccggcatttc gaacagcctc
       61 tccggcaagg gcgcgataca ttcggccggc ggcggttcga gcagctcatc gacacagccg
      121 gactaaggcc gcgacccgct cgctcctcct cgcgaagagc cgaaaaactt gaccttgccg
      181 gaggcggcac ctagatgcgc gccttcgcaa ttggtcccgc acgcccgtga agcggtgatc
      241 gcgtctgatg tccctcgaca aaaggaagag cggcaagaca ggcggtgcgg tcccgggcat
      301 tcgtaaccga cgcaaattgg agaatgtgaa tgtcgaagcg caccagcgcc aaatacaagc
      361 tcgaccgccg catgggcgag aacgtcttcg gacggcccaa gagcccggtc aatcgccgcg
      421 aatatggccc agggcagcat ggacaacgac gcaagggcaa gctcagcgac tatggaatcc
      481 agcttcgcgc caagcagaag ctcaagggat attacggcga catcaccgag aagcagttca
      541 agaagaacta cacgcaggcg atcgcgatga agggtgacgc atcgcagaac ctaatcggcc
      601 tgctcgaacg ccggctggac atggttgtct atcgtgcgaa gttcgcgccg acgatctggg
      661 ccgcacgcca gctcgtcagc cacggccaca ttcgtgttaa cggggtcaag tgcaacatcg
      721 cctcgcgccg cgtgaacatt ggcgacgtcg tcgagctggg ctcgaaggcg caggagatgg
      781 cgctcgtcat cgaggcacag agcctcgccg aacgagacat accggactat gtcgttccgg
      841 acggcacctc gcggatcacc ttcacgcgcg taccaaagct cgatgaagtg ccctatccag
      901 tgcgcatgga accaaacctc gtgatcgagt tctattcgcg ctaaaatcgc gccgattgag
      961 gatgtcgacg agggcggccg gcgcctgccg agccgccctt ttcattgtcc gtgtccaatt
     1021 gtccggtcga gcaacgcgcc gatcttcgtc agcatttccg tgcgtgccgc cccgtcctcg
     1081 agctggtggt cgagattctt gtatctcaga aactcgacgg gcgttccgac ggcccgaagc
     1141 gcggcttcca ttttttcaga ctcgagcgaa tggacattca tgtccatgtc gccgtggacg
     1201 agaaggaccg gtaccttgat ctcggcggca tgccgcaacg gcgacccttc aatgatgtgg
     1261 ggaccagagc cgatgaaccg agccacgatc tcgctgtcgg tatagtcttc ttcttcctta
     1321 gtcagcatcg cgaggtcagt gactggcgca atcgccgcga ccgctttgaa cagcgtcgga
     1381 tcagtcgcgg tcgcttggag tgccgcatag ccaccatagg accagccgac gatcgcgagg
     1441 cgcttcggat cggcgactcc ctcgctcacc agccagcgcg ccgaagccgt tatgtcgcca
     1501 atcgacgttc gccagctctt gaacccgttt tgcatgagcc aagtgtcacc aaaaccggat
     1561 gagccgcgat actcgggctg aagcactgca tagccctttg ccgccatata ttgtgcgagc
     1621 cagtcgaaac cccactcgtc gcggtcgctt ggacctccgt gcggcagcac gacagcgggg
     1681 aggttttttg gatccttgcc cggcggcaag gtcagatagg ccgggataac aacaccgtcg
     1741 ggcgatttga ctgagacggg cttaacgttc gcgagcttct tgttttcgag ctcggggcga
     1801 acaagcatga tttcggcaag attcttcgcc gccttgtcga agacgaaata gcgtccagga
     1861 tcgttgtcac tgccggcgtg aacaaggacc ctgttgccgt cggcgctcgt ccgctcgatg
     1921 tcgatgatcg gcagggtcgg gattgcggcg gccaaggcgg acaccagtgc cttgtactcg
     1981 gggtcaaaat agacccctac ccttttgtcc acgatgtacg tgtagccaat tacccgctga
     2041 ccattcgccg accggattac gttgtcgata tcaacgccag cgttggaagc gacgagttcg
     2101 gtcgtcggcg tgtcggtgag gttcactcgg tacagcgcct tgcggccgtc gagcggcttt
     2161 agcacgtaaa gcgagttcgt cgttgcgtcg atcgcgagtg gctggaatat ctcgctctcg
     2221 acccagtcgg tgagaggttt ccagtcgcgc gaagtcgccg ttcgatagaa atacttgctc
     2281 ttgccggtga gccgatcgtc gttggtcgcg aggcgttcca tcaaccggac cttgccgcgg
     2341 ccatcgctca tatagcttcc aacgtccggt tcaggctgct cgacttgg
//
LOCUS       DASRBJ010000346         6499 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_41681,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000346 DASRBJ010000000
VERSION     DASRBJ010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6499
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41681"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..520
                     /locus_tag="VE968_09535"
     CDS             101..520
                     /locus_tag="VE968_09535"
                     /inference="COORDINATES: protein motif:HMM:NF021458.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2171 domain-containing protein"
                     /protein_id="HZU52102.1"
                     /translation="MSELDRDYDDYRAENQSRFESDFGSWRERRQQKRGVLAQVREHM
                     EVVGSDNKHIGKVDKTAGDRLILTKSDPESGGLHHSISCSDIDRVDGDRVILDCTADQ
                     ARQRWRDESRGRALFEQEDRGEMGPRMLDKSFGGTYR"
     gene            688..1674
                     /locus_tag="VE968_09540"
     CDS             688..1674
                     /locus_tag="VE968_09540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HZU52103.1"
                     /translation="MARAWHLKSRPSGMPTMDNFELKEVELPPTGDGQVRVRNRWLSV
                     DPYMRGRMNDVKSYVPPFEVGAPLEGGAIGEVVESKVEGLKPGDLVQHMSGWRDEALL
                     DQRAANKLPDLGAPLEQFLGVLGVTGMTAYFGLLDAARAKAGDIVFVSAAAGAVGSVV
                     VQVAKAKGMTVIASAGGKAKCEWVRSLGADQVIDYKATPILKGLGTAAPEGIDVYFDN
                     VGGDHLDAALALARNNARFAICGMIEGYNDPTPKSFRFIQRIIAARITIKGFLVLDYF
                     ARLADFYGEMAPWVANGTVQSRETIVDGLERTPEAFLGLFRGDNVGKMLVHL"
     gene            complement(1671..2576)
                     /locus_tag="VE968_09545"
     CDS             complement(1671..2576)
                     /locus_tag="VE968_09545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004210998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HZU52104.1"
                     /translation="MRFGDEPESTNFTDDTGRGGFGFGGGGFGGGGLGCLLPLIASRF
                     GLGGVVVLLIGYFILSSLGGLGGGSGTGPLPSSQVGQQAATSQSTLDPATKHFTLQVL
                     RSTEDTWTRLLQPKGVAYTPTNLHFYSESDNSGCGAAQSAMGPFYCPTDKNIYLDTEF
                     FKELATRFNAPGQFPEAYVVAHEVGHHVQDLMGTLGQAEQLQARSSQTQGNAIQVKIE
                     LQADCYAGVWAANAKTPEGQPVLQQGDIEEGMRAAEAIGDDTLQKETQGTVVPDSFTH
                     GTSAQRMNALRTGYQSGNMDACQSL"
     gene            2678..3445
                     /locus_tag="VE968_09550"
     CDS             2678..3445
                     /locus_tag="VE968_09550"
                     /EC_number="1.1.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003858 - 3-hydroxybutyrate dehydrogenase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyrate dehydrogenase"
                     /protein_id="HZU52105.1"
                     /translation="MLLQGKVALVTGSTSGIGLAIAKALAGEGAKLMINGFGDPTEIE
                     RECNELGAIHDGADMSKPNEIERMMERCASELGGPDILVNNAGIQHVSPVEDFPTDKW
                     DAIIAINLSSAFHTCRLAVPGMKQKKWGRIINTASAHSLVASPNKSAYVAAKHGIAGF
                     TKTIALETARDGITANCISPGYVWTPLVERQIPDTMKTRGLTREQVMNDVLLAAQPTK
                     RFVTPQEIAALAVFLCREEAASITGANLSMDGGWTAA"
     gene            3457..4089
                     /locus_tag="VE968_09555"
     CDS             3457..4089
                     /locus_tag="VE968_09555"
                     /inference="COORDINATES: protein motif:HMM:NF027558.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4893 domain-containing protein"
                     /protein_id="HZU52106.1"
                     /translation="MRFLALLILTLLATGCDVIEQPAGLIPRYTTAYKDVISRNDRVR
                     LSDWRQTFESALDAARKSGHASEIEREGRLLDPDAAVAGPSIPNGMYRCRVIKLGAKD
                     LGNLDYVAYGPFSCRVRQERALQRLAKLSGPQRYVGLIFPGDPLRNVFLGTVVFADEN
                     RALQYGQDQLRDVAGYVERIGPNQWRVLMPRPHFESRLDVMELVPEGVTR"
     gene            4119..5399
                     /locus_tag="VE968_09560"
     CDS             4119..5399
                     /locus_tag="VE968_09560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003044278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HZU52107.1"
                     /translation="MISSSPTAAATLQEQIRSDMPMLLDLYRDLHANPELSMEEVRTP
                     ALMAPKMRQLGFDVTEHVGKTGLVAVMKNGPGPVLLLRADMDALPVKEQTGLPFASKV
                     IGKLPDGSDTPVMHACGHDTHITTWLATARRLSSMKDKWSGTLVMILQPGEERVMGAQ
                     AMLDDGLFTRFPKPDYLLAFHDSASLPAGVIGVTPGYALANVDTVNIDVKGIGGHGAY
                     PQNTKDPIVLASRIVMALQTLVSRENDPQQPAVVTVGSFHAGTKSNIISDDAKLALTV
                     RSYTPETRKLLLDGIRRIVRGEAIAAGMPENRMPTVEIEQPSADATFNTAQLSDRLLK
                     LFGAHFGDARVVQTKPIMASEDFSRFWLADKSKESVIFWVGGVPKAKWDAVNGDTLKL
                     PALHSALWAPDADAVISTATEAMTVAALDILKKG"
     gene            complement(5396..6352)
                     /locus_tag="VE968_09565"
     CDS             complement(5396..6352)
                     /locus_tag="VE968_09565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HZU52108.1"
                     /translation="MEKRSIGNSGIEVAPLALGGNVFGWTADEAASFAVLDAFVDAGG
                     TMIDTADVYSAWVPGHKGGESETVIGRWLKKNPEKRQRIVIATKVGMMAGLAPETIAR
                     ACDASLERLGIETIDLYYHHKDDPETPLVESLGAMDALVKSGKVRAVGLSQYSPERLD
                     EAMRTAAQNGFERPCALQTWYNLVEREKLEGPLRDAALRHGLGIIPFYGLANGFLTGK
                     YRNKEDLSKSSRGDRVAEYLEGKGMRVLAALDAVASETGAPLAAVALAWTNQQQGITA
                     TLASATSVEQLHELTKAMDLELTSEQVERLCEASLESEPAAA"
BASE COUNT         1266 a         1978 c         1976 g         1279 t
ORIGIN      
        1 gggctcggcc aattggtcgg accggtcgcg tgacgaacgc gcggaccgat cgcgagatga
       61 tcggttcgac ccgcattatc gcagctggag agatcgccac ttgagcgaac tcgaccgtga
      121 ttacgacgat taccgggccg agaaccagtc gcggttcgaa agcgacttcg gctcgtggcg
      181 cgaacgccga cagcaaaagc gcggcgttct tgcccaggta cgcgaacata tggaagtcgt
      241 cggaagcgac aacaagcata tcggaaaagt cgacaagact gctggtgatc gcttgatcct
      301 cacgaaatcc gatccggaaa gcggcggact ccatcattcg atcagctgct cggacattga
      361 ccgtgtcgat ggcgaccggg tgatcctcga ctgcactgct gaccaagcac ggcagcggtg
      421 gcgggacgag agccgtggcc gagcgctctt cgaacaagaa gatcgtggcg agatgggacc
      481 gcgaatgctc gataagagct tcggaggcac ctaccgttga accggtagag agctgagcct
      541 ccctcagctg gaggctggac gagacccggc ggtgcctttc accgccgggt cttcttttct
      601 ccgattgaat gcttgatcgg gtgaattgct tgctctctag atggttggcg agcagcctgc
      661 agaggggcag gaacggagga gggatcgatg gcgcgagctt ggcacctcaa gagccgcccg
      721 agcggcatgc cgacaatgga caatttcgag ctcaaggaag tggaactccc acccactggt
      781 gacggacagg tgcgcgttcg caaccggtgg ctttcggtgg atccatacat gcgcgggcgc
      841 atgaatgacg tgaagagcta cgtgccgccg ttcgaggtcg gtgcgccact cgaaggcggc
      901 gccattggtg aagtcgttga aagcaaggtc gaaggcctga aacccggcga cctcgtccag
      961 cacatgagcg ggtggcgtga cgaggcgctc ctggaccaac gcgccgcaaa caagctgccg
     1021 gacctaggag caccgctcga gcaattcctc ggcgtactcg gcgtgaccgg gatgacggcg
     1081 tacttcgggc ttctcgatgc cgcgcgtgca aaggccggcg acatcgtctt tgtctccgcc
     1141 gcggcgggcg ccgtcggatc cgtcgtggta caggtcgcca aggcgaaggg catgaccgtc
     1201 atcgcttccg ccggtggcaa ggccaaatgt gagtgggtcc gctcgcttgg tgctgaccag
     1261 gtcatcgatt acaaggcaac gccgatcctg aaaggcctcg gcacagcggc gcccgaaggg
     1321 attgacgtat atttcgacaa tgtgggtggc gaccacctcg atgcagctct tgccctcgcg
     1381 cgcaacaacg cccgtttcgc aatttgcggc atgatcgaag gctataatga cccgacgccg
     1441 aaaagcttcc gattcatcca gcggatcatt gccgcgcgga tcacgatcaa ggggttcctg
     1501 gttctcgact attttgcccg cctagccgat ttctacggcg agatggcgcc gtgggttgcc
     1561 aatggcaccg tccaatcgcg cgagacgatc gtcgatggac ttgagcggac accagaagcg
     1621 ttcctcggtc tcttccgcgg cgacaatgtc ggaaagatgc tcgttcacct ctagagcgat
     1681 tggcacgcat ccatgttgcc actctggtat ccggtgcgga gcgcgttcat ccgctgtgcc
     1741 gaggtcccgt gagtgaagct gtcggggact accgtccctt gcgtttcctt ctgaagcgtg
     1801 tcgtcgccaa ttgcctcggc tgcgcgcatt ccttcctcga tgtcgccttg ctgcaagacg
     1861 ggctgccctt ctggagtctt ggcgttggcg gcccagacgc ccgcataaca gtccgcctgc
     1921 agctcgattt tcacctggat tgcattgccc tgcgtttggc ttgagcgagc ctgcagctgt
     1981 tccgcctgcc cgagcgttcc catgagatcc tggacgtgat gaccgacctc gtgcgcaacg
     2041 acataggcct cggggaattg tcccggcgca ttgaaccgag tcgcgagttc cttgaagaat
     2101 tccgtgtcga ggtagatgtt cttgtcggtc gggcaataaa agggccccat cgccgattgc
     2161 gcggcgccac agcctgagtt gtcggattcc gagtaaaagt ggaggttggt cggcgtgtat
     2221 gcgacgccct ttggctgaag aagtcttgtc caggtgtcct cggtcgagcg cagcacctgg
     2281 agcgtgaagt gcttcgttgc cggatcaagc gtgctctgac tggttgctgc ctgctgcccg
     2341 acctgggacg acggaagcgg acctgtccca cttcccccgc ccagtccgcc aagcgaactc
     2401 aggatgaaat aaccaatgag gaggacgacc actccaccaa gaccgaagcg gcttgcaatc
     2461 agtggaagaa ggcagccgag cccccctcct ccgaagcctc cgccgccaaa accgaaaccg
     2521 cctctgccgg tatcgtccgt aaagttcgtg ctctcgggtt cgtcgccgaa gcgcatgctt
     2581 ctctcctgtt ggaaaggttc aatgcttggc ggcaagcacg gttgcaattc agcgccgcca
     2641 tcgcgaggag cgtctttttc cagtggagac tcgctttatg ctgcttcagg gcaaggtcgc
     2701 gctcgtaacc ggttcgacct cgggaattgg ccttgcaatt gccaaggcac ttgccggtga
     2761 aggtgccaag ctgatgatca atggttttgg cgacccaacc gaaatcgagc gcgagtgcaa
     2821 tgaactcggc gcaatccatg atggcgccga catgtcgaaa ccgaatgaaa tcgagcgcat
     2881 gatggagcgc tgcgccagcg agctcggcgg ccccgacatc ctcgtcaaca atgccggcat
     2941 ccagcacgtc tctcccgtcg aagacttccc aacggacaaa tgggacgcga tcatcgccat
     3001 caatctttcg tctgccttcc atacgtgccg ccttgcggtc ccgggaatga agcagaagaa
     3061 gtggggccgg atcatcaata cggcgagtgc tcacagcctc gtcgcttcgc ccaacaagag
     3121 tgcctatgtc gcggcaaagc acggcattgc gggcttcacc aagacaatcg cccttgaaac
     3181 cgcgcgcgac ggcatcaccg cgaactgcat ttctcccggc tatgtttgga cgccgcttgt
     3241 cgaacggcag atcccggaca cgatgaaaac acgcgggctg actcgcgagc aggtcatgaa
     3301 cgacgtgctc ctcgccgctc agccaacgaa gcgcttcgtt accccgcaag agatcgcggc
     3361 gcttgccgtc ttcctgtgcc gtgaggaagc agcctcgatc accggtgcaa acctcagcat
     3421 ggacggcggt tggacagccg cttaagctcg acggcaatgc ggtttctcgc ccttctcatt
     3481 ctcaccctct tagccaccgg ctgcgacgtc atcgagcagc cggcggggct cattccgcgc
     3541 tacacgaccg cttacaagga cgtgatcagc aggaatgacc gggtccggtt aagtgactgg
     3601 cgccagacgt tcgaaagcgc tctcgatgct gcgcgcaaga gcggtcatgc gtcggagatc
     3661 gagcgcgaag gaaggctgct cgatccggac gctgcagtgg ctgggccgtc gatccccaat
     3721 ggcatgtacc gatgccgggt gatcaagctc ggcgcgaagg acctcggcaa cctcgactac
     3781 gtggcctacg gaccgttcag ctgccgcgtt cgccaagaac gcgcgttgca gcgcctcgca
     3841 aagctcagcg gcccgcagcg ctatgtcggc ctcatttttc cgggggatcc actccgtaac
     3901 gtttttctcg gcactgtcgt cttcgccgat gagaaccgcg cgctgcaata cgggcaggat
     3961 caactgcgcg atgtcgctgg ctatgtcgag cgtatcggcc ccaatcagtg gcgcgtcctg
     4021 atgccgcgac cgcattttga atcccggctc gatgtgatgg agctggttcc tgagggagta
     4081 acgcgttgaa gaacatgcta tggcttgccg ctgctgcaat gatttcgagt agcccaaccg
     4141 ccgcggcaac gctgcaagaa cagatccgct cggacatgcc gatgctgctc gatctctacc
     4201 gcgatctcca tgcgaacccc gagctatcga tggaggaagt gcgcacgccg gcactgatgg
     4261 cgccaaagat gcgccagctc ggatttgatg tgaccgagca tgtcggaaag accggcctcg
     4321 tcgccgttat gaaaaatggt ccaggcccgg tgctccttct ccgcgccgac atggacgcgc
     4381 ttccggtcaa ggagcagacc ggcctcccct tcgcttccaa ggtgattggc aagcttcccg
     4441 acggcagtga cacgccggtg atgcatgcct gcgggcacga cacgcacatc acgacgtggc
     4501 tcgcaacggc caggcgtctt tcgagcatga aggataagtg gtcgggtacg ctggtcatga
     4561 tactccagcc cggcgaagag cgcgtgatgg gcgcacaggc catgctggat gacggcctgt
     4621 tcacgcgctt tcccaagccc gattatctcc tcgcctttca cgatagcgca tcattgccgg
     4681 caggagtcat tggcgtcacg ccgggctatg ctctcgccaa cgtcgacacg gtcaacatcg
     4741 acgtgaaggg catcggcggc cacggtgcct atccgcagaa cacgaaggac ccgatcgttc
     4801 ttgcgtcgcg catcgtcatg gccctccaga ccctcgtcag ccgagagaat gatccccagc
     4861 aaccggctgt cgtgacggtt ggaagcttcc acgccggtac gaagagcaac atcatttccg
     4921 atgacgcgaa gctggcgctt acggtgcgca gctacactcc agagacgcgg aagcttttgc
     4981 tcgacggcat tcgccggatc gtgcgcgggg aagcgattgc cgcgggcatg ccggaaaacc
     5041 ggatgccgac ggtggagatc gagcagccct cggcggatgc gacgttcaac acggcacaat
     5101 tgtccgatcg cttgctgaag ctctttggcg cgcattttgg cgatgcacgg gtcgtccaga
     5161 ccaagcccat catggcaagc gaggatttca gccgcttctg gcttgcggac aagtcaaaag
     5221 agagcgtgat cttctgggtc ggcggcgtgc caaaggcaaa atgggatgcg gtcaacggcg
     5281 acacgctgaa gcttccggcg cttcatagcg cgctgtgggc gcccgatgcc gacgcggtca
     5341 tctccacggc gaccgaggcg atgacggttg ctgcgctcga tatcctcaaa aagggctagg
     5401 cggccgcggg ttcgctttcg aggcttgctt cgcaaaggcg ttcgacctgc tcgctcgtaa
     5461 gctcgaggtc cattgccttg gtgagttcgt gaagctgctc gacgctcgtg gcgcttgcaa
     5521 gcgtggcggt gattccttgc tgctggttcg tccaggcaag agcgaccgcg gcaagcggag
     5581 cgccggtttc cgaagcgacg gcgtcgagcg cggcaagtac gcgcatgccc ttcccttcga
     5641 gatattcggc aacgcggtcg ccccggctgc tcttcgatag atcttccttg ttccggtact
     5701 tgccggtcaa aaagccgttc gcaagaccat agaatggaat gatcccaagg ccgtgcctca
     5761 gcgcggcgtc gcgaagcgga ccctcgagtt tctcgcgctc gacaagattg taccaggtct
     5821 gaagcgcgca aggccgctcg aatccgtttt gcgcagcggt gcgcatcgct tcatcgaggc
     5881 gctcgggcga atattgtgaa agtccgacgg cgcgcacttt acccgacttc acgagcgcgt
     5941 ccatcgcgcc aaggctctca acgaggggcg tctcaggatc gtccttgtgg tggtaataaa
     6001 gatcgatcgt ctcgattccg agccgctcaa gcgacgcatc gcatgcgcgg gcgatcgtct
     6061 ctggtgcaag tcccgccatc atcccgacct tcgttgcaat gacgatccgc tgacgcttct
     6121 cagggttctt cttcagccag cggccaatga ccgtttcgct ttcgccgcct ttatgacccg
     6181 ggacccaggc ggaatagacg tcggccgtgt cgatcatcgt tccacccgcg tcgacgaagg
     6241 catcgaggac ggcaaagctc gcggcttcgt cggccgtcca gccgaataca tttccgccga
     6301 gcgccagggg cgcaacttca atgccgctgt ttccgatcga tcgcttttcc acttactgcc
     6361 tcctcacggg tgattgaagc gcaggttcac tgaagtcgtt cctcgacgtt cacgacttct
     6421 ttgtaaaatt tagcgacacc cacgcacatg tcggcggaat tgacagctag cggccaatgt
     6481 tcggcctgat tgcgttctg
//
LOCUS       DASRBJ010000347         4747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_252303,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000347 DASRBJ010000000
VERSION     DASRBJ010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4747
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252303"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            411..884
                     /gene="aroQ"
                     /locus_tag="VE968_09570"
     CDS             411..884
                     /gene="aroQ"
                     /locus_tag="VE968_09570"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010335659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HZU52109.1"
                     /translation="MMDKPIWILNGPNLNLLGEREPEIYGPDTLLDIHEATKRLAHEI
                     GVSIDFRQSNREGELIEWVHEARQAASALIINAGGYTHTSVSLRDAVASLKIPVVEVH
                     LSNIYAREPFRRHSYLSEVVHGTITGFGAQGYLLALKAASSLARPVDVPFRVAST"
     gene            complement(1017..2651)
                     /locus_tag="VE968_09575"
     CDS             complement(1017..2651)
                     /locus_tag="VE968_09575"
                     /inference="COORDINATES: protein motif:HMM:NF024905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HZU52110.1"
                     /translation="MTTRIELLAPWRTDRWPIAVRASLSMGAAAAIGWLLLGFPAGML
                     ATLGAFTSLYAPNRPYANRAIVLAAVGIAITIMVGAGMELRPLAWGSAGVVVAATGVI
                     TFVVNASRVGPPGAYLIVLAGAAGTSLPPKLPVGEAELLVMVGAAVSWVVHMAGALRQ
                     PRGPERRAVLEAAAAIEKALEAKDQGSIKCRRAAAKALHEAWAALTTFQPFAVSRGRR
                     LNSLRAINRQLHTIFAEHVLSSTGSAAIQVVHRVRELADMARSREYHRHAADPLPLGR
                     LELWESLRENFDLRSSATRTAILVVIASALAAAISLLVHLERPYWSIAAAVLVLHQDQ
                     SWSGVLRKAIDRIGGTTLGLVLAGAILLMRLASVGVVLSIMALQFISELLVVRRYAIA
                     VVFITANALLIASGGRHAVDVPGLVWGRGLDTLLGCMTAVMVYLALGGRKPDVSMMHE
                     QERVNDAIDLVRSFVQSGEVTSLLARRARRDLQHRLLVLASVEERYLDDRQITKEFNS
                     RLLGDVETLEQQGYAALAACWSLEIGGKGFARHLQE"
     gene            2893..3906
                     /locus_tag="VE968_09580"
     CDS             2893..3906
                     /locus_tag="VE968_09580"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HZU52111.1"
                     /translation="MAAALAASPAYSSIEALPVRHIPAHDLPVPTTVSPQMQAAIANA
                     PPSVAPTSLPTTNAGWKEASNPDPAKTHSDVLAVLSRLKLKLKETRFGGVHCYLITPE
                     PSSSPPTRLLMYIHGGAYTGGAGESGLMEGLFVAGATRIETVAVDYRMPPDHPFPAPL
                     DDAIAVWKQLSGDYPRAKLGLFGSSTGGAMTLALTQRSISEHLRVPDAVFAGSPWSDL
                     SQTGDSYFSNRYTDPMVYEGGLSVSARQYANGLDLKDPRLSPVYGSFSNFPPTLLLSG
                     TRDLFLSNTVRVAQKLRDADSPTELIVYEGQTHTAYLSGLDYPETQAALRDISSFFRR
                     NLK"
     gene            3962..>4747
                     /locus_tag="VE968_09585"
     CDS             3962..>4747
                     /locus_tag="VE968_09585"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HZU52112.1"
                     /translation="MERVAALAGVSKITVSRALRGSNLVRPEVRDRIVKIARESGYRM
                     NVAARSLRTRRTQTIAVVIEQVVSDERPMADPLLLWMIGGLIEVLTPADHALLLTTSD
                     HFLASNAIGADGIVMIGQGENARKLEEVRSAGLPMVAWGAPVPGLNVPVVGSDNRLGG
                     QLAARHLVEDCGCVKLLFLGDNRHPEIAGRFEGVRDVLSSSSASLAGAIPCGFSIHGG
                     MQAIEGALERGIEFDGVLAVSDFIAAGACEELERKGRKVPGDVA"
BASE COUNT          983 a         1432 c         1407 g          925 t
ORIGIN      
        1 ccgcgcgact tggacaagag cctggatcga tccaacaggt ggaaggcgtt tcacccgatg
       61 ctcgcttgtt gtgcaatgca gcatctagcg gcgcaatgcc cggcgctgca agcagaaaag
      121 gagccgcccc gaggagagag gtggggcggc tctgctagtc acgtactggg agagttgccg
      181 ttgaccggca ggaagaccaa tcgccgacaa tcaaatttgc tgcaattgcg aaatttgcat
      241 tcgcaggtgc gaaataagca acagtactca acccaagagg ttggggcgcc ggcgagcgag
      301 ccgagctaag gtcgaacgat gattgtgccg cgcgtgcccc cgcgcgcttg agctttggga
      361 ctgccttcgg agctgtgtag ctttctcgtt ctggaggctg ctaagggagc ttgatggaca
      421 agccgatatg gatcctgaac ggccccaatc tcaaccttct tggcgaacgc gagccggaga
      481 tttatggccc cgacacactc ctcgatattc atgaagccac aaagaggctc gctcatgaaa
      541 tcggcgtcag catcgatttc cggcagagca accgggaggg cgaacttatc gagtgggtcc
      601 atgaagcgcg tcaggccgcg tcagcattga ttatcaacgc cggcggatac acccacacgt
      661 ccgtcagcct tcgcgacgcc gtcgcttcac tgaaaatccc ggtggtcgaa gttcaccttt
      721 caaacatata tgcaagagag ccatttcgga gacacagcta cctcagtgaa gtagtccatg
      781 gaacgatcac gggatttggt gcgcaaggtt atttgctcgc gctcaaggct gcctcgtcgc
      841 tggcgagacc cgtggacgtc ccgttccgtg tcgcatcgac ctgacacgaa agtgcgcgcg
      901 cctcggactc gcttagcgtg ctcggccgaa gggtaaagag acggctcgcg ctcttcagga
      961 gttcttacgg agactgacca ggaagtttcc ggtcgggatc ttccgtgtcg gcctcctcat
     1021 tcctggaggt ggcgggcgaa ccctttaccg ccaatttcaa gcgaccaaca agccgccagc
     1081 gccgcatatc cctgctgctc aagtgtttcg acgtcgccca gcaaccgcga gttgaattcc
     1141 ttcgtgattt gccgatcgtc gaggtaccgc tcttcgacgc tcgcaagaac aagcaagcga
     1201 tgttgcaagt ctcggcgcgc ccggcgcgct agaagactgg tgacctcgcc tgattggacg
     1261 aatgatcgga cgaggtcgat cgcatcgttc acgcgctctt gctcgtgcat catcgaaacg
     1321 tccggtttgc gtccgcctaa tgccaagtag accattactg ctgtcataca tccaagcaat
     1381 gtgtccaacc ctcttcccca gacgagcccc ggaacatcga ctgcatggcg gccgccggag
     1441 gcaatgagga gagcgttcgc cgtgatgaac acgacggcaa tcgcatagcg cctcacgacg
     1501 agaagttccg aaatgaactg cagcgccatg atgctgagaa cgactccgac gctcgcgagg
     1561 cgcatcaaga gaatagcgcc agcaagtacg agcccgagcg tcgttccacc aattcgatca
     1621 atcgcctttc gcagtactcc gctccaactc tggtcctgat gaagaacgag tacggcggcg
     1681 gctatcgacc agtaagggcg ctcaagatgc acaaggagcg aaatcgctgc ggcaagcgcc
     1741 gacgcgatga ccaccaggat tgcggtcctg gtggccgaag atcgtaggtc gaaattctcg
     1801 cgaagcgact cccacagttc gagcctcccc agcggcaacg gatccgcggc gtggcgatga
     1861 tattcccggg atcgcgccat gtcggctagt tctcgcaccc ggtgcacgac ttggattgct
     1921 gccgagcccg tggacgagag aacatgttcg gcgaagatcg tgtgcaattg tcggttgatt
     1981 gcgcgcaagc tgttgagccg tcgcccgcgc gaaacggcaa agggctggaa cgtcgtcagt
     2041 gccgcccagg cctcgtgaag tgctttcgca gcggcccggc ggcatttgat tgaaccttga
     2101 tcctttgctt caagtgcctt ctcgatcgcc gccgcagctt cgagcactgc ccggcgctcg
     2161 ggcccgcggg gttgtcgtag ggcgcctgcc atgtggacca cccatgagac agccgcgccc
     2221 accatcacca gcagttctgc ctcgccgacc ggcaacttcg gcgggagaga cgtgccggcg
     2281 gcaccggcca gcacaataag gtaagcgcca ggcggtccca cacgcgaggc attgaccaca
     2341 aaggtaatga ctccggtcgc cgcgacgacc actccagcgg acccccaggc aagcggccgc
     2401 agttccattc ccgcgccaac catgatcgtg attgcaatcc ccactgctgc aaggacgatt
     2461 gcccggttcg cataaggccg gttaggagca tagagcgatg tgaaagcacc gagcgttgca
     2521 agcatgcctg ccggaaaccc gaggagcagc cacccgatcg cagcggctgc gcccatcgag
     2581 agagaggcgc gaacagcgat cggccagcga tcggttcgcc agggcgcaag taactcaatg
     2641 cgggtcgtca tcgaccacct aaacgacgac ggcgggggtt cggcacttcg ctaactcgat
     2701 ggcatgctca tttctgaagc aatgctagct tgccgcgacg cgactagcga tgttcgccga
     2761 tgcgagttgc ttggagagat gcctcgtcgc gcaagtgaaa tcctcatggc cctttgcgct
     2821 ggttgccccc catgttagct catccaggat ctagcagggt gggttcgggt gttgaaagtc
     2881 aaccatggag taatggcggc tgcacttgcc gcttcgccgg cgtactcatc catcgaagct
     2941 ttaccggttc gccatattcc agcgcacgat cttccagtgc cgacaaccgt cagtccgcaa
     3001 atgcaggcag cgattgccaa tgctccaccg tccgtcgccc caacgagctt gccgacgacc
     3061 aatgctggct ggaaggaagc atcgaatccc gacccagcta agacccactc cgatgtgctc
     3121 gccgtcctct cccgtctcaa gctgaagctc aaagaaacga gatttggcgg cgttcattgc
     3181 tatctgatca cgcccgagcc ttcatcatcg ccgccaacgc gtcttttgat gtacattcac
     3241 ggcggcgcct atacgggcgg cgccggtgaa agcggactaa tggagggact attcgtcgcc
     3301 ggcgcgacac gcatagaaac ggttgccgta gattacagga tgccgcccga tcatcctttt
     3361 ccagcgccgc ttgacgatgc gatcgctgtc tggaagcagc ttagcggaga ttatccgcgc
     3421 gccaaattag gcctgttcgg ctcttcgact ggcggcgcga tgacgctggc actcactcag
     3481 cggagcatca gcgagcatct tcgtgtcccc gatgcagtct ttgccggttc gccctggtcg
     3541 gacttgtctc agacgggcga ttcttatttc tcgaaccggt acactgatcc aatggtctac
     3601 gagggcggct taagtgtctc cgcgcgccaa tacgcaaacg gcctggactt gaaggatcct
     3661 cggctttccc cggtgtatgg ctcgttttcg aattttccgc caacgctcct gctgtcgggc
     3721 actcgagact tgttcctgtc gaacaccgtg cgcgttgcac aaaagctccg cgacgccgac
     3781 tctccaaccg agctgatcgt ctacgaaggc caaacgcaca ctgcctatct gtcggggctc
     3841 gactatcctg agacgcaggc ggcgctccga gacatttcga gcttttttcg gcgcaacctg
     3901 aaatgatccg ttaccaagaa acaagatcga aaggcccggc gtgatcggag agcggccaac
     3961 gatggagcgc gttgccgctc tcgcgggtgt ttcgaaaatc accgtctcgc gagcattgcg
     4021 aggcagcaat ctcgtgcggc ccgaggtacg tgaccggatc gtcaagattg cgcgcgagtc
     4081 cgggtaccgg atgaacgttg cggcgcgcag tctgcggaca cgccgaacac agacgattgc
     4141 cgtcgtcatt gagcaggtcg tctccgacga acgaccgatg gccgacccgc tcctcttgtg
     4201 gatgattggc ggactgatcg aggttctgac accggccgac catgccttgc ttctgaccac
     4261 cagcgatcat ttcctcgcat cgaacgcgat tggcgctgat ggcatcgtga tgattggaca
     4321 gggcgagaat gcgcgcaaac tcgaggaggt acgaagcgct ggacttccaa tggtcgcctg
     4381 gggggcgcct gtacccggat tgaacgttcc cgtcgttggc agtgacaatc gtctcggcgg
     4441 ccaacttgcg gcgcggcacc tggtcgagga ttgcggctgc gtgaagctcc tgttcctggg
     4501 cgacaatcgc cacccggaaa tagcaggacg gttcgaaggc gtccgcgacg ttctttcgag
     4561 cagctcggcg tcgctcgccg gggcaattcc gtgcggtttc tcaattcacg gaggcatgca
     4621 ggcaatcgaa ggagcgctcg aacgcgggat cgagttcgat ggagtcctag cagtcagtga
     4681 cttcattgct gccggcgcat gcgaggaact tgaacgaaaa ggtcgcaaag tgcctggcga
     4741 cgtggcg
//
LOCUS       DASRBJ010000348         8298 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_651568,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000348 DASRBJ010000000
VERSION     DASRBJ010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 8298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8298
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_651568"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1908
                     /locus_tag="VE968_09590"
     CDS             <1..1908
                     /locus_tag="VE968_09590"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU52113.1"
                     /translation="DRRLDPYDPYASATGDPLTHAAQLYYRFGSADGYNNYGGYRNEV
                     LRAAVGASGTFLNGFHFQVDGTASQSRLRVTNDVVSLSGFEQAIATGQYNLIDPALNS
                     ATIRNSVILRNDYTATSALYALQGIVTKDLLLLPGGPLQLGVGAHFRHESLDNPDANP
                     TGDFIGVNQVNAKGERDVEAGFFEVSAPVVKQLELQLSGRYDHYSTGFSNFSPKAGFK
                     FTPVRALALRGTWSRGFRAPSFAETAGQITGFTTYTPGAYQSLCEQHGGSFASGSCTG
                     GDPYTRSGQALGFRDNANPNLDPEKSQSLTAGIILQPIREISFTLDYYHIKKTNIITG
                     GPLSNAALDAYYAGTPLPAGYSVLLNPVDPQFPNGIRSVAIVVGPYANASSLVTSGVD
                     FAAQASFRLSRGLRWSSNLETTRINKFDFRSCSDDSDPGCAVQHYVGTQGPYILSSGA
                     GTPRWRGNWSNSFEFGRASLTGTIYYVSGYRMTAEDQNGPGTGADCTTNLYNAGFACR
                     TKSFTWVDLVGSYKLTNGITLYGNVLNLFDAKAPVDPPNYAVANYNPTYTQAGAVGRF
                     FRVGANFSFRPHERLAPPEPVLSAPPAPPASPTQICPGGADIDASTACPLVSPPSPPV
                     PAAPAAKSERG"
     gene            complement(1965..4568)
                     /gene="clpB"
                     /locus_tag="VE968_09595"
     CDS             complement(1965..4568)
                     /gene="clpB"
                     /locus_tag="VE968_09595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HZU52114.1"
                     /translation="MDFEKLTDRARGFLQAAQTIAVREHQQRIAPAHLLKALLDDDQG
                     MAAGLIQAAGGDAKAAQREVDQLVSKIPSVTGSGATQAPALDGDTIRILDQAEQVAKK
                     SGDSYVTVERILLAMALAKGTDVANVLSKAGITPQKLNAAIEQLRGGRTADTQGAEDR
                     YDALKKYARDLTEAARNGKLDPVIGRDEEIRRTVQVLARRTKNNPVLIGEPGVGKTAI
                     VEGLALRIANGDVPDGIKDKRLLALDMGALIAGAKYRGEFEERLKGVLDEVREAEGDI
                     ILFIDEMHTLVGAGKAEGAMDAGNLLKPALARGELHCIGATTLDEYRKYIEKDAALER
                     RFQPVFVGEPTVPDTISILRGLKEKYELHHGVRITDAAIVAAATLSNRYITDRFLPDK
                     AIDLMDEAASRIRMEVESKPEEIENLDRRIIQLKIEREALKKEQDAASKDRLSRLEDE
                     LANLEQQSAELTQRWQAEKEKISAEAKLKEQLDAARLELEQAQRAGDLAKAGELAYGK
                     IPQLERQVADAQAAAKGAMLREEVTDQDIAGVVSRWTGIPVERMMEGEREKLLQMEAA
                     IGARVIGQEDAVKAVSAAVRRARAGLQDPNRPLGSFLFLGPTGVGKTELTKALAEFLF
                     DDASAMVRIDMSEFMEKHAVARLIGAPPGYVGYEEGGVLTEAVRRRPYQVVLFDEVEK
                     AHGDVFNVLLQVLDDGRLTDGQGRTVDFTNTIIILTSNLGSQYLAQLGEDEPVEKVEP
                     QVMEVVRAHFRPEFLNRLDEIILFHRLGSGHMGPIVDIQVARLQKLLDDRKIRLELSD
                     AARAWLGRVGYDPVYGARPLKRAVQKYVQDPLADKILAGEIPDGSTVRVDEGDGELVL
                     TRAGELREAAE"
     gene            complement(4674..5483)
                     /locus_tag="VE968_09600"
     CDS             complement(4674..5483)
                     /locus_tag="VE968_09600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52115.1"
                     /translation="MRSLVATLLIVAAPVAAQTPPAGPPSPAALPPASSWDPAAQYIT
                     SGQDEPGYRAWYLAVPARAQQVKAFNDYLASAEVAGILPTWQLLRTASSWKDCNSQPF
                     EVPPADEWPHMVQTLRYIRDYVIPAIGPVEPVSAYRNPALNVCAGGAPESAHKLDSAV
                     DLVPLRPITRETLMRTMCGIHSAHGAAYNAGLGFYAYLRFHVDSTKFRRWNMDPAVAA
                     DCPPIIHPEDMASVGQPLPQPPPANGASTALQAPSSTANVQPQGGSTAQPH"
     gene            5546..5863
                     /locus_tag="VE968_09605"
     CDS             5546..5863
                     /locus_tag="VE968_09605"
                     /inference="COORDINATES: protein motif:HMM:NF021188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoic acid system family protein"
                     /protein_id="HZU52116.1"
                     /translation="MTQPIDVDLPHNLGKEEAKRRIGSNIHKLEQHIPGGAQVQSGWS
                     GDQLNLQIAALGEAVNATIDVRETTVHLKVLLPGMLGMFSSLIQATLQKKGNILLEDH
                     SKG"
     gene            5909..7207
                     /locus_tag="VE968_09610"
     CDS             5909..7207
                     /locus_tag="VE968_09610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003040895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HZU52117.1"
                     /translation="MRQFAVVGSGPAGFYTAEALQKAYGEKARIDILDRFPVPYGLIR
                     FGVAPDHQSLKAVSKRYDKVAETAGVDFIGNVSVGKDVSVSELLDLYDAVILATGAPN
                     DRRLNIPGEDLAGVVGSAEFVGWYNGHPEFADLDPYLRGASAAVVGNGNVALDCARIL
                     SKTRTEFEGSDIVRHALEALDQSGIRTVTILGRRGPHQIAMTPKELGELAHLEAAVPI
                     VDPRDFPPVDMDEALEPGLRKSVSLLRSFASLEREKAKSIVFDFFAKPVAIEGEGRAE
                     RVIVERTVLDESGSARGTGEIYEVPANLVVTAIGYSTSPIPDVPFEGGKFVNKAGQIA
                     GRLFAVGWARRGPSGTIGTNRPDGYEVADQIVAAMPPGSSAQRAGAKGLKDLLLSRGV
                     LATDYEDWRKIEASEIENARPGSPREKFVRHEDWLNAVGR"
     gene            7295..7371
                     /locus_tag="VE968_09615"
     tRNA            7295..7371
                     /locus_tag="VE968_09615"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7329..7331,aa:Pro,seq:cgg)
     gene            complement(7464..7793)
                     /locus_tag="VE968_09620"
     CDS             complement(7464..7793)
                     /locus_tag="VE968_09620"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HZU52118.1"
                     /translation="MGTYDRKLHETVRGFSPWIDREMRYATAAMTTITTSDGRSASAK
                     VLNVSNKGCRIRTSLPLKEGERLTFVVEPHGMVEAKVCWLRESEAGVKVITRDPFYRD
                     YSFAYPP"
     gene            complement(7824..>8298)
                     /locus_tag="VE968_09625"
     CDS             complement(7824..>8298)
                     /locus_tag="VE968_09625"
                     /inference="COORDINATES: protein motif:HMM:NF015857.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="OmpW family outer membrane protein"
                     /protein_id="HZU52119.1"
                     /translation="STFEHYTPTVQVGYMVTPEIALNATLGVPPTIDVYGAGSIGALP
                     KLGRVTYGPTALTVQYHPFRTGWIRPYVGAGLAYMIVFNTEDGAFKNLRVGNDLGWAV
                     EAGTDLMINRHWGMFIDFKKAGLRPRATGTFNGIPVVGKTRLDPRAFSGGVVVHI"
BASE COUNT         1574 a         2507 c         2461 g         1756 t
ORIGIN      
        1 gatcggcggc tcgatcctta tgacccctac gcgtcggcga cgggtgatcc gctaacccat
       61 gcggcgcagc tttattatcg cttcggatca gcggacggct acaacaacta cggagggtat
      121 cgaaacgaag tcctccgagc ggccgttggc gcgagcggca cattcctgaa cggtttccac
      181 ttccaagtgg acggaactgc ctcgcagagc cggcttcgcg tcacgaacga tgtcgtcagc
      241 ctctccgggt tcgagcaggc aattgcaact gggcagtaca atctcatcga cccggcactc
      301 aacagcgcaa caattcgcaa ttcagtcatt cttcgcaatg actataccgc gacatcggcg
      361 ctctatgccc tgcagggcat cgtaacgaag gacttgttgc tgctccccgg cggcccgctt
      421 cagctcggcg ttggcgcgca ctttcgccac gagtccctcg ataaccccga tgcgaatccc
      481 accggcgact tcattggcgt caatcaggtg aacgccaagg gtgaacgcga tgtcgaggcc
      541 gggttcttcg aagtttccgc gccggtcgtg aagcaactcg aacttcaact gtcggggcgt
      601 tatgaccatt attcgaccgg tttcagcaat ttctcgccga aagccgggtt caagttcaca
      661 ccagttcgcg cactggcgct gcgcggcacc tggtcgcggg gcttccgagc gccgtcgttc
      721 gccgaaactg cgggtcagat aacaggtttt acgacataca cgcctggagc ataccaatcg
      781 ctgtgcgagc agcacggcgg ctcgtttgca agcggatcat gcactggcgg cgacccatat
      841 acccgcagtg gccaggcgct tggcttccga gacaacgcca acccgaacct tgatcctgaa
      901 aagtcgcaga gtttgaccgc gggcatcatc ctgcagccga tccgcgagat cagtttcact
      961 ctcgattatt atcatatcaa gaagacgaac atcatcaccg gcggcccgct ttcgaatgcg
     1021 gcgcttgatg cttattacgc cggtacgccg ctaccggctg gctacagcgt ccttctgaac
     1081 cctgtcgatc cacagttccc caatggtatc cgttcagtcg ctatcgtcgt tggtccttac
     1141 gcgaacgcgt cgtcccttgt gacgtccggc gttgactttg cagcgcaggc cagtttccgc
     1201 ctttcacggg gtttgcgctg gtcgagtaac ctcgagacga cgcggatcaa caagttcgat
     1261 ttccgttcgt gctcggacga cagtgatccc gggtgcgctg tacagcatta tgtcggtact
     1321 caggggccgt acattttatc gtcgggcgct ggcacgccgc ggtggcgcgg gaactggtcg
     1381 aacagctttg aatttgggcg agcgtcactg acggggacga tttactacgt cagcggttac
     1441 cggatgacgg ccgaagacca gaacgggcct ggtacggggg cggattgcac gaccaacctc
     1501 tacaatgcgg gctttgcctg ccgaacgaag agtttcacct gggtggacct tgtcggtagc
     1561 tacaagctga cgaacgggat tacgctctat gggaatgtct tgaacctctt tgacgccaag
     1621 gcgccggtcg atccgccgaa ctatgccgtg gcaaattaca atccgaccta tacgcaagcc
     1681 ggagcggttg gccggttctt ccgcgtggga gcaaatttca gcttccgtcc gcatgagcgc
     1741 ctcgctcctc ccgagccggt tctttccgcg ccacccgcgc cgccggcgtc gccaacccaa
     1801 atctgtcccg gaggcgccga catagacgcg tccacggctt gtccgcttgt gtcgccccca
     1861 tcgccgcctg tacctgcggc accagcagcc aagagcgagc gcggctgaat tggaaagatg
     1921 gaagggtgac gctcaccctc cctaggaatc ggttcagcct tcgcttattc ggctgcctcg
     1981 cgcagctctc cagcgcgtgt cagcacaagc tcgccatcgc cttcgtcaac gcgaacggtc
     2041 gagccgtcgg ggatctcccc cgcgaggatt ttatcggcaa gcgggtcttg cacatacttc
     2101 tgaacggcgc gtttcagcgg gcgcgctcca tagacgggat catagcccac gcgaccgagc
     2161 caagcccggg cggcgtcact gagctcgagc cggatcttgc ggtcgtcgag gagcttctgg
     2221 agccgtgcga cctgaatgtc gacgatcggt cccatgtgac ccgaaccgag ccgatggaaa
     2281 agaatgattt catcgaggcg gttcaggaat tccggccgga agtgcgcgcg cacgacctcc
     2341 atgacctgtg gttcgacctt ctcgactggc tcgtcttcac cgagctgcgc cagatattgc
     2401 gagccgaggt tcgaagtcag aatgatgatg gtgttggtaa agtcgacggt gcggccctga
     2461 ccgtccgtca gtctcccgtc atcgagcacc tggagcagca cgttgaacac gtcgccgtgc
     2521 gctttctcga cctcgtcgaa aagcaccacc tgatagggtc gacgccgcac ggcttcggta
     2581 aggactccgc cttcctcata gccgacatag cctggaggcg caccgatcaa tcgagcgacc
     2641 gcatgcttct ccatgaactc gctcatgtcg attcgaacca tcgccgaggc gtcgtcgaag
     2701 aggaattcgg caagagcctt ggtgagttcc gtttttccga cgccggttgg cccgagaaag
     2761 aggaacgagc ccaaggggcg gttcggatcc tgcagcccgg cacgcgcacg ccgaacagcc
     2821 gcggagacag cctttacggc atcctcctgg ccgatgacgc gtgcgccgat cgcagcctcc
     2881 atctgcaaaa gcttctcgcg ttcgccctcc atcatccgct caacgggaat gcccgtccag
     2941 cggctgacca cgccggcgat gtcctggtca gtcacttcct cgcgcaacat ggcgccctta
     3001 gccgccgcct gcgcatccgc aacttgtcgc tcgagctgcg ggattttgcc gtaggcaagc
     3061 tcaccggcct tggcgaggtc gccagcgcgc tgagcctgtt cgagctctag acgagcggcg
     3121 tccagctgtt ccttgagctt cgcctcggcc gagattttct ccttctcggc ttgccagcgc
     3181 tgggtgagtt ccgcggattg ctgctcgaga tttgcaagtt cgtcctcgag acgtgacagc
     3241 cgatccttcg aggcggcgtc ctgttccttc ttgagagcct cgcgctcgat cttcagctga
     3301 atgatgcgcc gatcgagatt ctcgatctcc tccggcttcg attcgacttc catcctgatg
     3361 cggctcgccg cctcgtccat gaggtcgatc gccttgtcgg gcagaaatcg gtccgtgatg
     3421 tagcgattgc taagggttgc agcggcaacg atcgccgcgt cggtgatacg cacgccgtgg
     3481 tgcagctcat atttttcctt aagaccacgt aggattgaga tcgtgtcggg aacggttggc
     3541 tcgccgacga acaccggctg gaaccgacgc tcgagtgccg catccttctc gatatacttg
     3601 cgatattcgt cgagcgtcgt tgcgccgatg cagtgcaact ctcctcgtgc aagtgccggc
     3661 ttcagaaggt tgccagcgtc cattgcgcct tcggcctttc cggcgccaac cagcgtatgc
     3721 atctcgtcga tgaaaaggat tatgtcgcct tcggcctccc gaacttcgtc gagaacgccc
     3781 ttcagccgct cttcgaactc gccgcgatac ttagcgccgg cgatgagtgc tcccatgtcg
     3841 agcgccagca ggcgcttgtc cttgattcca tcggggacgt caccgttggc aatgcgaagc
     3901 gcaagccctt cgacaatcgc cgttttgccc acacccggct caccgataag cacggggtta
     3961 ttcttcgttc gccgagcgag aacctggacg gtccggcgaa tctcctcgtc gcgtccaatg
     4021 accggatcga gtttaccgtt gcgcgctgcc tcggtgaggt cgcgcgcata tttttttagc
     4081 gcatcgtagc gatcctcggc gccctgcgtg tccgctgtcc gcccaccacg gagctgctcg
     4141 atcgcggcat tcagtttttg cggcgtgata ccggcctttg aaagcacgtt tgcaacgtcc
     4201 gtcccttttg caagtgccat tgcaaggagg atccgctcca cggtcacgta gctgtcgcct
     4261 gacttctttg cgacctgctc agcctggtcg agaatccgga tcgtgtcgcc atcgagtgct
     4321 ggcgcctggg tcgcgccgct ccccgttacc gatgggatct tcgaaaccag ctggtcgact
     4381 tcgcgctgtg ctgccttggc atcgccgccg gcggcttgga tcaggcccgc ggccattccc
     4441 tgatcgtcgt caaggagtgc cttcaaaaga tgcgcggggg cgatgcgctg ctgatgctcc
     4501 cgaacggcaa tggtctgcgc cgcctgtaag aatccacgtg cgcggtccgt cagcttttca
     4561 aaatccattc aatcttttcc ctctgtcttg agggtcgata tggtgttgca aacaagcaac
     4621 acaaggcccc acgcgaagct ttgatgaccg acaagttcaa gtgttcaact gccctagtgt
     4681 ggctgggctg ttgagcctcc ttgaggttga acattggctg ttgagcttgg cgcctgcaat
     4741 gccgtgcttg ccccattggc tggcggcggt tgtggcaaag gttgcccgac acttgccatg
     4801 tcctccggat ggatgatcgg cggacagtcg gctgcaacgg ccggatccat gttccagcgc
     4861 cggaacttgg tgctgtctac gtgaaaccgc aaataggcat agaagccgag cccagcattg
     4921 taggctgcgc cgtgcgccga gtggatgccg cacatggtgc gcatgagcgt ttcgcgagtg
     4981 atcgggcgca acggcacaag atcaacggcg gaatcgagct tgtgagcact ttccggagcg
     5041 ccgcctgcgc aaacgttaag ggcgggattc cggtaggccg agacgggctc gacgggcccg
     5101 atcgcgggta tcacgtaatc gcgaatgtac cgcagcgtct gcaccatgtg cggccattcg
     5161 tcagccgggg gcacttcgaa cggctggctg ttgcagtcct tccaggagct ggcggtacgt
     5221 agtagctgcc aggttggcag aattccggcg acctccgcac ttgcaagata atcgttgaac
     5281 gctttcacct gctgcgcgcg cgcaggaaca gcgaggtacc aggctcgata acccggctcg
     5341 tcctggcccg acgtgatata ttgcgctgcc ggatcccacg aacttgccgg tggcaaggct
     5401 gccggcgaag gcggcccagc gggcggagtt tgcgcagcga cgggcgcggc gacgatcaac
     5461 aatgtggcta caagcgaacg catcagaaga tgatactctt cgcgcgcgcc ttgaaaagcg
     5521 ctgaatgctg gccgacatcc catttatgac tcagcccatc gacgtcgatc ttccgcacaa
     5581 tcttggaaag gaggaagcga agcgtcgcat tggcagtaat atccataagc tcgagcaaca
     5641 catccctggt ggcgcacagg ttcagtcagg atggtcaggc gaccagctca atcttcagat
     5701 cgctgcactc ggggaagcag tgaatgcgac catcgatgtc cgcgagacga ccgtgcatct
     5761 gaaggttctt ctcccaggta tgctcggaat gttctccagt ctcatccagg caacccttca
     5821 gaaaaaggga aacattctcc tcgaggatca ctcgaagggc tgacgccctg ccggtcggcc
     5881 gctaagctta accctcgaag gaggcgccat gcggcagttc gctgttgtcg gttcgggtcc
     5941 ggcgggtttc tacactgccg aggcgctgca aaaagcttat ggcgagaagg cacggataga
     6001 cattctggat cgctttccgg ttccctacgg cctcattcga ttcggggtcg ctcctgacca
     6061 ccagtcgctg aaggcggtca gtaagcgcta tgacaaggtg gccgagactg ccggcgtcga
     6121 tttcatcggc aacgtgtcgg taggcaaaga cgtaagtgtt tcggaattgc tcgatcttta
     6181 cgacgccgtg atccttgcca cgggcgcgcc gaacgatcgc aggctcaaca taccaggaga
     6241 ggatctcgcg ggcgtcgtgg gctcggccga gtttgttggt tggtacaatg gccacccgga
     6301 atttgccgat ctcgatcctt atctccgggg cgccagcgcc gcggtcgtcg gcaatggcaa
     6361 tgttgcgctc gattgcgcga ggattctgtc caagacgaga acagaattcg aaggttccga
     6421 tatcgttcgg cacgcgcttg aagcgcttga ccaatcggga attcgcacgg tgacaatcct
     6481 cgggcgccgc ggcccgcacc agattgcgat gacgcccaag gagctcggtg aactcgcgca
     6541 cctcgaagcg gctgtcccaa ttgttgatcc gcgtgacttt ccccccgtcg acatggatga
     6601 ggcgctcgag cctggcttgc gcaagtcggt cagtctgttg cgaagcttcg cgtctcttga
     6661 acgcgaaaaa gccaaatcaa tcgtcttcga tttcttcgcg aagcccgtcg cgatcgaggg
     6721 cgagggacgg gcggaacggg ttatcgtgga acggacggtg ctcgacgaat ccggatcggc
     6781 gcggggtact ggcgaaatct atgaagtgcc cgcgaacctc gtcgtgactg cgattggcta
     6841 ttcgacgtca cccattcccg atgttccctt cgaaggcgga aagttcgtca acaaggctgg
     6901 tcaaattgcc ggccgactat tcgctgttgg ctgggctcgg cgtgggccta gcggtactat
     6961 tgggacgaac cgtccggacg gctatgaagt ggccgatcaa attgttgctg caatgcctcc
     7021 cggcagttcg gcgcaacgtg ccggtgctaa ggggctcaag gatttactct tgagcagggg
     7081 cgttcttgcg actgattatg aagattggcg caagatagag gcaagcgaaa tcgagaacgc
     7141 acgcccgggc tcgccacgtg agaagttcgt gcgccatgaa gactggctta acgcggtcgg
     7201 acgctaagcg gcttgcgctt gctcgagccc ccttctatct agccgcggcc ttggctcccg
     7261 ccgctactga cgtggcaatc gcgcgggttc cggtcgggga gtagctcagc ctggtagagc
     7321 actgtcttcg ggaggcaggg gccggaggtt cgaatcctct ctccccgacc attacaacat
     7381 tgattgctga ggcgctgttt cgtccactcg caaggctcgc ggcgatggac ggggaagagc
     7441 tgcctaagaa gatcagcaga cgatcacggc ggataagcga aactgtagtc gcgatagaat
     7501 gggtcgcggg tgatcacctt cactccagcc tcgctttcgc gcagccagca taccttggct
     7561 tcaaccattc cgtgcggttc gacaacaaat gtcaggcgct cgccctcctt gagtggaagc
     7621 gacgtacgaa tgcggcaacc tttgttcgag acattgagga cctttgctga tgccgatctc
     7681 ccatcgctcg tggtgatcgt cgtcatcgct gccgtcgcat agcgcatctc tcggtcgatc
     7741 catggggaaa atccgcggac cgtttcgtga agcttgcgat cgtaagtccc catcgagtta
     7801 ctctccaggg cggggtttgc cggtcagatg tggaccacta ctccaccgct gaatgctcga
     7861 ggatcgagcc gcgtcttgcc gacgactggt ataccattga aggtgccggt ggcccgcggg
     7921 cgcaagcccg cttttttgaa gtcgatgaac atgccccagt ggcggttgat catcagatct
     7981 gttcctgcct cgacagccca accgaggtca ttaccgaccc tcaagttttt gaaggctccg
     8041 tcttcggtat tgaatacgat catgtaggca aggccagctc cgacataggg tcggatccaa
     8101 ccagtgcgga acggatgata ttgcacggta agtgccgttg gtccgtaggt aacgcggccg
     8161 agcttcggga gagcgccgat gctgccggcg ccataaacgt caattgtcgg cggaacaccg
     8221 agcgtggcat taagcgcaat ctccggcgtc accatatagc cgacctgcac cgtcggcgta
     8281 taatgttcga atgtcgag
//
LOCUS       DASRBJ010000349         6156 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_452279,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000349 DASRBJ010000000
VERSION     DASRBJ010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6156
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452279"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1425)
                     /locus_tag="VE968_09630"
     CDS             complement(<1..1425)
                     /locus_tag="VE968_09630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 protein"
                     /protein_id="HZU52120.1"
                     /translation="MQVAPTAEARAADVVSRMTLDEKLQLVFGYFATDWQGKHPPAGV
                     RYGSAGFVPGIDRLGITPQWETDAGIGVATQGGAVQKRLRTALPSGLATAATWNPQIA
                     FKGGQMIGSEARASGFNVMLAGGVDLARDPRNGRNFEYAGEDPLLAGTIVGSEIAGIQ
                     SNHIVSTAKHYALNDLESGRKGHDARIDRGAARMSDLLAFQFAIERGQPGSVMCAYNK
                     VNGDFSCENSWLLNDVLKHDFGFRGYVMSDWGAVHSTEKAAINGLDQESGWPFDEQPY
                     FREPLKAAVLAGRVPQARIDDMARRILYALYATGAEDNPVSENLPINYSADESVSEAD
                     AEQAIVLLKNEGNLFPLATNARRIVVIGGHADKGVLAGSGSSLVYPRGGNAVPGLAPT
                     GWPGPVTYYPSSPLHELRSLLPNTSFIFVDGNNPAEAAAAARNADAAIVFATQWSSES
                     IDVPMALDGDQNSLIEAVAAANPRT"
     gene            1633..2757
                     /locus_tag="VE968_09635"
     CDS             1633..2757
                     /locus_tag="VE968_09635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HZU52121.1"
                     /translation="MLPVDVADAVLAGRLLLDAGPTPVLVRGDRVEDISRSVPTIADL
                     MDVADPSHLAGEYLFGIDELTRLPRERFLAPVDLQTVKAAGVTFAVSALERVIEERAR
                     GDYRDARAIRGKLEDRIGGGIRSVIPGSDAAGRLKQALIEEGLWSQYLEVAIGPDAEI
                     FTKTAPLASVGWGAEIGIRSDSTWNNPEPEVVLVVSHEGKIRGATLGNDVNLRDFEGR
                     SALLLSKAKDNNASCAIGPFVRLFDSSFSLDDVRSAVVDLEIDGTDGFTLRGQSRMGE
                     ISRDPAELVRQAMSEHHYPDGFVLFLGTLFAPTQDRDEEGRGFTHKPGDEVRISTPKL
                     GTLVNIVTTSRDAPPWTFGTRALMRNLSERGLLAGTSENN"
     gene            2757..4193
                     /locus_tag="VE968_09640"
     CDS             2757..4193
                     /locus_tag="VE968_09640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016746921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HZU52122.1"
                     /translation="MLETLNHLINGESIGGNAEGESLNPSNLDDVVARFPRGGTAEVN
                     RAVEAARAAFPSWSDASPEVRSDVLDKAGTLIMSRAKELGTLLSREEGKTLPEGTGEV
                     MRAARICKYFAGEALRRHGQTLESTRPGIDAETYREAVGVFGLITPWNFPIAIPAWKS
                     APALAFGNTVVLKPATPTPAIAHAFGEILLEAGAPPGVFNMIIGEGDVGRAMVEHQGI
                     DGISFTGSQSVGASVAEGAAKRQARVQLEMGGKNPLVVLDDADIDRAVMCAIDGAFFG
                     TGQRCTASSRIIVTEGIHDRFVEALAAKARSLRVGDALDPQTQVGPAVSQQQLEQNLK
                     YVKIATDEGGKILAGGEPLTLDKRGFYMAPTVIADTQPQQRINCEEVFGPVASTVKVR
                     DYDEALEIANRGQFGLSAGIVTNSLKFARHFRRNIRAGMVMINLPTAGVDYHVPFGGT
                     RKSSYGAREQGFAAIEFYTQTKTAYIWS"
     gene            4198..4956
                     /locus_tag="VE968_09645"
     CDS             4198..4956
                     /locus_tag="VE968_09645"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZU52123.1"
                     /translation="MTDASGQRAVYPSLKGKRVLVTGGGSGIGAGLVEGFAAQGCDVV
                     FIDINASDSEELAQRTGARFIRVDLTDIKATRSAIDGMIAEGGSIDVLVNNAANDDRH
                     ELEDVTEAYWDDRLNVNLKHQFFCTQAVVPGMRASGGGVIINLGSISWHLALPGLILY
                     ETCKAAIEGLTRSLSRELGPDNIRVSCVVPGNVRTPRQLKWYTPEGEAEIVNAQCLKG
                     RLVPEDIAAMALFLASDDARLITGHEHFVDAGWR"
     gene            4958..5833
                     /locus_tag="VE968_09650"
     CDS             4958..5833
                     /locus_tag="VE968_09650"
                     /EC_number="3.1.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HZU52124.1"
                     /translation="MSDESPAPVWKLEAELGEGPVWVEREKALWFVDIKRQQIHRYDP
                     ATGLKKSWNAPEQVGFVFPAEPGGFIAGLQSGLYKFDDVSGDFTLIVEVERELPDNRL
                     NDGVVDPAGRLWFGTMDNGEKAKTGAFYCFQQGRLTRTELDQITITNGPAVSPDGKLL
                     YCVDTLKGTIQAAEIRDDGSLGDIRPFVRIDPKEGHPDGPTIDSNGYLWISLYGGWEA
                     RRYAPSGDLVERVRFPVANITKIAFGGERLRTAYATTARQLLSAETIAKQPLIGSLFE
                     FRVTVPGVPCPLVRL"
     gene            5812..>6156
                     /locus_tag="VE968_09655"
     CDS             5812..>6156
                     /locus_tag="VE968_09655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="9-O-acetylesterase"
                     /protein_id="HZU52125.1"
                     /translation="MSARASLSFSLFVLVAFRAVAAPTIDPQFSTHAVIERDKPIVLS
                     GTAQPREHVSVSFAGQNRTITTDDDGHWMATFRSLGSGGPYRIKVDGPDGTAQADDIM
                     IGDVWLCSGQSNM"
BASE COUNT         1258 a         1808 c         1849 g         1241 t
ORIGIN      
        1 cgttcgtgga ttcgccgctg ccaccgcttc gatcagcgaa ttctgatcac cgtcgagtgc
       61 cattggaacg tcgatcgatt cgctcgacca ctgggtcgcg aacacaatcg ccgcatcggc
      121 gttgcgggcc gctgccgcgg cctcggcagg gttgtttccg tccacgaaga tgaacgacgt
      181 attgggtaga agagagcgca actcgtgaag aggtgacgag ggataatagg ttactgggcc
      241 gggccagccc gtcggtgcga gcccaggcac ggcattgccg ccgcgcggat agacgagcga
      301 tgacccgctc ccggcgagaa cccccttgtc agcgtgaccg ccgatgacga cgatcctgcg
      361 cgcgttcgtc gcaagcggga aaaggttccc ctcgttcttc agcagcacaa ttgcctgctc
      421 tgcgtcggct tcgctcaccg attcgtcggc cgaatagttg atcggcaagt tctcgctgac
      481 cgggttgtcc tcggcaccag tggcatagag cgcataaagg atgcgccgcg ccatgtcgtc
      541 gatccttgct tgcggcaccc ttccggcgag cacggccgcc tttagtggct cgcgaaaata
      601 aggctgctcg tcgaatggcc agccggactc ctggtcaagg ccgttgattg cagctttctc
      661 cgtgctgtgg acggcacccc agtcggacat cacatacccg cgaaaaccaa aatcgtgctt
      721 gagaacgtcg ttgagaagcc agctgttctc acaggaaaag tcgccgttga ccttattgta
      781 ggcgcacatg acggatcccg gctggccgcg ctcgatcgcg aattggaacg cgagaagatc
      841 ggacatgcgg gcagcgccac ggtcgatgcg cgcatcatgg cctttgcgcc cactttcaag
      901 atcgttcagc gcatagtgtt tcgcggtgga gacaatatgg ttcgattgga tcccggcgat
      961 ctccgagccg acaattgtcc ctgcaagaag cgggtcttcg ccggcatatt cgaaattgcg
     1021 tccgttgcgc ggatcgcgcg caagatcgac accgccagca agcatcacgt tgaaacccga
     1081 tgcgcgcgct tcgctgccga tcatctgacc gcccttaaaa gcgatttgag gattccacgt
     1141 cgccgccgtt gctagtcccg acgggagtgc tgtgcggagt cgcttctgca ctgccccacc
     1201 ttgcgtcgcg acgccgatcc cggcatccgt ctcccattgc ggcgtgatcc cgagacggtc
     1261 gattccggga acgaaaccag cggagccata acgcacgcca gccggcggat gttttccctg
     1321 ccagtccgtg gcaaaataac cgaagacgag ctgtagtttc tcgtcgagcg tcattctgct
     1381 caccacatcg gctgcccgtg cttcggccgt tggcgccacc tgcactgtcg cggctccggt
     1441 tggcagagcg catccgatta aaagcgcgaa aacggcagca ttcctgcaat tcatgatctc
     1501 tctcctcgcg gatatctgct atccgctctc ccacttacga acttgacact agctgccatc
     1561 agcgttgatt ggtagcgcta ccacgacact cgatcgaggc ttcttcgtcc aaagatgcag
     1621 ttcacttccg cgatgcttcc agtcgatgtt gccgacgccg ttcttgccgg ccggctgctg
     1681 ctcgatgcgg ggccgacgcc ggtgcttgtt cgtggtgatc gagtcgaaga tatttcgcgt
     1741 tccgttccga ccattgccga tctcatggat gttgcggacc catcgcattt agcgggcgag
     1801 tacttgttcg gtatagacga gcttacccgc ctgccacgcg agcgcttcct ggcgccggtc
     1861 gatctccaga cggtaaaggc cgctggagtg acttttgccg tctcggcgct tgagcgcgtc
     1921 atcgaggagc gtgcgcgcgg cgattatcgc gacgcacgcg caatccgggg aaaactcgag
     1981 gaccgaatcg gcggtggtat ccgatccgtg attccaggca gcgacgcggc aggacgtttg
     2041 aagcaggcgc tcatcgagga agggctctgg tcacaatatc ttgaagtagc gattggtcca
     2101 gatgccgaga tcttcacgaa gaccgcgccg ctcgccagcg ttggttgggg agccgagatc
     2161 gggatccgat cggactcaac ctggaacaat ccggagccag aggttgtcct tgtcgtcagt
     2221 cacgagggaa agatacgggg cgcgactctc gggaacgatg tgaacctgcg cgatttcgaa
     2281 gggcgaagcg cgctgcttct aagcaaggcg aaagacaata acgcatcctg tgcgatcggt
     2341 ccttttgtcc ggctgttcga ttcgagtttc agccttgatg acgtgcgctc ggcagttgtt
     2401 gatctcgaga ttgacggcac cgacggcttc actcttcgcg gccagagtcg aatgggcgaa
     2461 atcagccgcg atccagccga gctggttcgc caggcaatga gcgagcatca ttatcccgat
     2521 gggttcgtcc tctttctcgg caccttgttc gcgccaacgc aggatcgcga cgaagaaggc
     2581 cggggcttca cgcacaagcc aggcgatgag gtacggattt cgacgcccaa gctcggcacg
     2641 ctggtcaaca tcgtgacgac atcgcgtgat gcaccaccgt ggacatttgg cacgcgggca
     2701 ctgatgcgca acttgtcaga gcggggactg ttggcgggga cgtcggagaa taactgatgc
     2761 tcgaaacact taatcacctc atcaatggcg aaagcatcgg tggaaacgcc gagggtgaaa
     2821 gcctcaaccc gtccaatctc gatgacgttg tcgcgcgctt cccaagaggg ggaactgctg
     2881 aagttaaccg cgcggttgaa gccgcgcgcg ccgcattccc ttcctggtcg gatgcttccc
     2941 ccgaagtacg ctcggacgtt ctcgacaaag ccgggacgtt aatcatgagc cgcgccaagg
     3001 agctcggcac attattgtcg cgcgaggagg gaaagacgct tcccgaaggc actggcgaag
     3061 tcatgcgagc ggcacgaatc tgcaagtatt tcgctggaga ggcactgcga cgtcatgggc
     3121 aaaccctcga gtcaacgcgc cccgggatcg atgccgagac ctatcgcgaa gctgtcggcg
     3181 tctttggact gatcactccg tggaattttc cgatcgcaat ccccgcttgg aagagcgctc
     3241 ccgcgctggc gttcggaaat acggtagttc taaagccggc aaccccaacg ccggcgattg
     3301 cgcatgcatt tggcgaaatc cttctcgaag ccggtgctcc tccaggcgtc ttcaatatga
     3361 ttatcggcga aggtgacgtt ggccgtgcga tggtcgagca ccagggaatc gacggaattt
     3421 cgttcactgg gtcgcaatct gtcggcgcat ccgttgccga aggtgccgcg aaacgccagg
     3481 caagggtgca gctcgaaatg ggcggcaaga acccgctggt cgtgctcgac gatgcggaca
     3541 tcgaccgtgc ggtgatgtgc gcaatcgacg gcgcattctt cggtactggg caacgctgca
     3601 cggcttcgtc gcggatcatt gtgactgaag gcattcacga tcgcttcgtc gaggctctgg
     3661 cggcgaaagc acgctcgctc cgggtcggcg acgcgctcga tccgcagact caagtcgggc
     3721 ctgcagtcag tcaacagcag ctcgaacaga atctcaaata tgtgaagatc gcgacggatg
     3781 aaggcggcaa gatcctcgcc ggcggtgagc ctttgacgct cgataagcga ggcttctaca
     3841 tggccccgac ggttattgcg gacactcaac cgcaacagcg catcaactgc gaggaagtat
     3901 tcggtccagt cgcaagcacg gtcaaagtgc gtgactatga tgaagcgttg gagatcgcca
     3961 atcgcgggca gttcgggctg tcggcgggga tcgtcaccaa ttcgctcaaa tttgcccggc
     4021 actttcggcg gaacattcgc gctggaatgg tcatgatcaa ccttccaaca gcaggcgtcg
     4081 attaccacgt gccgttcggc ggcacgcgca agtcgagtta cggcgcgcgc gagcagggct
     4141 tcgccgccat tgaattctac acgcagacta agactgccta tatctggagt tgatgatttg
     4201 accgatgcgt ccggccagcg cgccgtttat ccgagcctta aaggcaaacg cgtgctggtc
     4261 actggtggtg ggtccggcat tggtgctgga ctagtcgagg gattcgcggc gcaaggctgc
     4321 gatgttgtgt tcatcgatat caacgcgtcc gattccgaag aactcgcgca acgaacgggc
     4381 gcgcgcttca ttcgcgtcga tctaaccgat atcaaggcaa cgcgttctgc gatcgacggg
     4441 atgatcgctg aaggaggatc gatcgacgtc ctcgtcaaca acgctgcaaa tgacgaccga
     4501 cacgaactcg aggacgtgac cgaggcctac tgggacgatc gactgaacgt caatctcaaa
     4561 caccagttct tctgcacgca ggccgttgtg cccggaatgc gcgcgagcgg tggcggcgtg
     4621 atcatcaact tgggctcgat cagctggcac ctcgcgctgc cggggctcat tttgtatgaa
     4681 acctgcaagg ctgcaatcga agggctgacg cgctcgctct cgcgtgagct cgggccggac
     4741 aacattcgtg tctcgtgcgt tgtccctgga aacgttcgaa cgccgcgaca actcaaatgg
     4801 tacacgccag aaggcgaagc ggagatcgtc aacgcacagt gcttgaaagg acgcttggtg
     4861 ccggaggaca tcgccgcaat ggcgctattc cttgcctcgg atgatgcacg gctgatcacc
     4921 ggacacgagc atttcgtcga cgcgggttgg cgctgaaatg agcgacgaat cacccgcgcc
     4981 ggtctggaaa ctcgaagcag agctgggcga aggtccggtt tgggtcgaac gcgaaaaagc
     5041 gctctggttc gtcgacatca agcgtcaaca gattcaccgc tatgaccctg caacaggact
     5101 gaagaaaagc tggaatgcgc ctgaacaggt gggtttcgtt ttcccggcgg agcccggtgg
     5161 attcatcgcc gggctccagt ccggacttta caaattcgat gacgtaagcg gtgatttcac
     5221 gcttattgtc gaagttgaac gggagcttcc ggacaaccgg ctcaacgatg gcgtggtcga
     5281 tccggccgga aggctgtggt ttggaacgat ggacaatggg gagaaggcaa aaacaggcgc
     5341 attctattgc ttccaacagg gccggcttac gcgaaccgag cttgatcaaa tcacgatcac
     5401 caatggccca gccgtctcac ctgacggaaa gctcctctat tgcgtcgaca ccctgaaggg
     5461 aacgatccaa gctgccgaga tccgcgacga cgggtcgctc ggtgacattc ggccattcgt
     5521 ccgaatcgat ccgaaggaag gccatcccga cggcccaacc atcgacagca atggctatct
     5581 ttggatctcc ttgtatggcg gctgggaagc gcgccgctac gccccttcgg gcgacctcgt
     5641 cgagcgcgtt cgatttcccg ttgccaacat cacgaagatt gcgtttggcg gcgagcgctt
     5701 gcggaccgcc tatgcaacaa ctgcccgcca actcctgtcg gccgagacaa tagccaagca
     5761 gccgctcatc ggctcgttgt tcgagttccg cgttaccgta ccaggagtgc catgtccgct
     5821 cgtgcgtctc tgagcttctc gctattcgtt cttgtcgctt ttcgagccgt tgctgctccc
     5881 accatcgacc cacaattttc aactcatgcc gtcatcgagc gtgacaagcc gatcgtgctg
     5941 agcgggacag cgcaacctcg cgagcacgtc agcgtaagct tcgctgggca aaatcgaacg
     6001 atcacgaccg atgacgatgg tcactggatg gcgacgttcc gttcgctggg gtccggcggt
     6061 ccttaccgca tcaaagtcga tggaccggat ggaacagccc aagcggacga cataatgatt
     6121 ggcgacgtgt ggctttgttc cggccagtcc aacatg
//
LOCUS       DASRBJ010000350         7708 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_198416,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000350 DASRBJ010000000
VERSION     DASRBJ010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7708
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198416"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..683
                     /locus_tag="VE968_09660"
     CDS             <1..683
                     /locus_tag="VE968_09660"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZU52126.1"
                     /translation="AAEALNDMQARIRGYIVERTSVVGAIAHDLRTPLSRLKFHLDLA
                     PVDEPFRRRLEAEIDEMEQMIAASLQFAGAEARAQVHERIDLTLLVEGIIDDLTDLGS
                     PVSLKDAEPTIVVGDPLLLKRLFTNLINNAVTYGSRALVSIQHDCERAIVDVDDEGPG
                     LEGASLDRAFEPFYRAESSRNRMTGGMGLGLAIVKAAANSHGGDVELRNRAEGGLRAR
                     VSLPLELT"
     gene            804..1115
                     /locus_tag="VE968_09665"
     CDS             804..1115
                     /locus_tag="VE968_09665"
                     /inference="COORDINATES: protein motif:HMM:NF021496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2218 domain-containing protein"
                     /protein_id="HZU52127.1"
                     /translation="MIEATAAVPTYNADRYVLSVCKRWHEGMDVNVRERQGVIHFENA
                     VATFTPSANQLVVSILAKDEESIAHLQHVVMAHLETAVLPNEPLTFDWRRSANFELHA
                     L"
     gene            complement(1139..1849)
                     /locus_tag="VE968_09670"
     CDS             complement(1139..1849)
                     /locus_tag="VE968_09670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744496.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HZU52128.1"
                     /translation="MKSVGLGFALGFAMLTSRASAQQALVNQNIAGTRLDVVAAAEVT
                     RVPDVAIVSAGVISRSTNAASALGESSSRIERMTNVLRRAGVSDSDIQTSDLRLNPEY
                     RYPENEAPQLVGYSATNTIRVRLRDLKKAGPILDALVAQGANQINGPVFTIDRPDEAL
                     DEARVKAIALGRARADLYAHSLGLHVTRVVSVNETEAANVGPEGAFTMQARAAPPTKI
                     MEGEQKLKVCVAMTFELQ"
     gene            complement(1924..2184)
                     /locus_tag="VE968_09675"
     CDS             complement(1924..2184)
                     /locus_tag="VE968_09675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017184326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HZU52129.1"
                     /translation="MEHYGIIGWIVIGGIAGAIAKLLMPGKDPGGCIITILLGIAGAL
                     LAGWIGHAIGWYKTGEGAGFVAAVVGAIILLLIYRLVAARRT"
     gene            2429..3604
                     /locus_tag="VE968_09680"
     CDS             2429..3604
                     /locus_tag="VE968_09680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HZU52130.1"
                     /translation="MNRETTIHSSDTLVVVDRSRRNRRLIVAAAVVVALLAVILAIMN
                     RSASDKQAAANAAKGAGQVPTVTIVVPGRTQVARMVTASGPLAAKRDQPIGIAGAGGR
                     VTRVLADAGTWVRAGQVLAVVDRSVQTQQAAQQSAQIEAAKAQAALAQSDYDRAIALQ
                     GRGFISKAEIDSKKASRDAAYAQVRVAQAQLGATRAQIGQLNVIAPAAGLVLARSVEV
                     GQTVGPASGALFRIAEGGQMEMRAQLSQQDLANVHVGMPAEVTPVGSSTSFTGTVWQV
                     APVIDAQSRLGEVRIAVPYAPAMRPGGFAQAKISSGSTAAPLLPQSAVLSDEKGNYVY
                     IANARNEIERRPIKIGTVDDGGVTIASGLSGDERVVLSAGPFLNPGQKINPRREAAQ"
     gene            3637..7026
                     /locus_tag="VE968_09685"
     CDS             3637..7026
                     /locus_tag="VE968_09685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HZU52131.1"
                     /translation="MNFRNISSWCIRNPVAPIVLFVGLMLAGLIAFYGMQVNNNPDID
                     FPAASVTVVQPGAAPNELETQVTQRVESAIRGVNGVDEIDSTVTEGSSNTFVQFKIGT
                     PTDRAVNDVRNAIAQIRSNLPEGILEPQIERIDIAGGPIMAVGAQTSDMTLEELSWFI
                     DNTVSKRLLGLEGVAAVTRTGGVDRTIRVILDPAELQAQGITASEVNNQLRASNLNAT
                     GGRAEVAGSEQSVRVLGNAQNAYDLSQTQIALPGGRFVRLADLGKVEDSYSEQRSIAK
                     MNGKQVVTFMVQRAKGSSEVTAYDQSWDELRKIEKDNPKVHFAEIFNNVDYTKKQYSS
                     AMEGLVEGAILAVLVVLLFLRDIRATLISALAIPLSAIPAFWFMNLLGITLNGLSLLA
                     LSLVAGVLVDDAIVEIENIVRHMRMGKSAYQAALDAADEIGLAVLATTMSIVAVFLPV
                     ALMPGISGQFFKAFGFTVVVSVLMSLLVARMITPLIAAYFLRSHGEQPHAAWKWMDVY
                     LRVLSWSLDTRKAKARIAALPHARSHVWYYFAAAIPVLLIACVFVISFGAAVKGATAA
                     QLPLTLCIVVALVAAFVITYAFAKLVGLLLSTVGGGFGEWWNSIAVGYWNAMLHDHRI
                     AMVGAGFGALVLSGLLFASLPMTFQPAINADDSDVNFTLPPGATLKQSEAVADRIAAI
                     LKPQPEVERVYERVNVGSGHVSAVLKKDRKKTSTEFERSLAPALSAIPDARASFQSQN
                     GGGPSGDSRDIMLYLGGEDPVELNAVANKIADEMATIPGLRAPRVAGDLAQPEITIKP
                     RFDLAADLGVTTSALSQTIRIATLGDIEQNSAKFSLSDRQIPITVSLSENARRDLSTL
                     ENLPVPTSNGNSVPLKAVADIGFGSGPTTIQRTNQIRRIAVGADLAPGVVSGDVWPKI
                     NNLPTLQHLPQGVQKLNLGDQKWQGELIYYFVLALMAGVLLVFAVLVLLYRRFLAPFV
                     NMGSLVLAPLGAAIALHIAGQPVSLPVLIGILMLFGIVAKNSILLVDFAVEMMNHGMK
                     KNEAIREAGHKRAQPIVMTTVAMVAGMLPIALSLSGDASWRAPMGVTVIGGLIFSTLL
                     TLLLVPAYFSIAISIESRIGRLFHRLIGSDAHAAAYPVPAE"
     gene            7082..>7708
                     /locus_tag="VE968_09690"
     CDS             7082..>7708
                     /locus_tag="VE968_09690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HZU52132.1"
                     /translation="MTNGALSRFNPAQPGAQGMKVVATGLLLVMAAVFFAARAVETQH
                     PWLNYVKSFAEAAMVGGLADWFAVTALFRHPLGLPIPHTAIIPRNKDRIGEALATFLR
                     ENFLIPSVVARRMRRLDVAAAAGRFLRTPSGEGTRIRAGASRLIADMFESLDDERLGG
                     IVKGAISSRLRKMEISPLLGHALASAINEDRHVPMLEAAIRWTARALDA"
BASE COUNT         1541 a         2351 c         2271 g         1545 t
ORIGIN      
        1 aagcagccga ggccctcaac gacatgcaag cgcggatccg cggctatatc gtcgaacgaa
       61 cctcggtcgt gggagcaatc gcacacgatc tccgtacccc cctctcgcgc ctcaaattcc
      121 atctcgatct tgcgcccgtc gacgaaccgt tccgaagaag gttagaagcc gagatcgacg
      181 agatggagca gatgatcgcg gccagtctcc aattcgccgg cgccgaagca cgggcacagg
      241 tgcatgagcg aatcgatctt acgttgctgg tcgaaggtat tatcgacgac ctcaccgatc
      301 ttggaagtcc ggtgagcttg aaggacgctg agccaacgat cgtcgttggt gacccactgc
      361 tcctgaagcg gctctttacg aacctgatca acaatgccgt gacctacgga agtcgtgcgc
      421 tcgtttcgat tcagcatgat tgtgaacggg caatcgtcga cgtcgatgac gagggtcccg
      481 gccttgaagg agcgagcctc gaccgcgcct tcgagccctt ttaccgtgcg gaaagctcgc
      541 gaaatcgaat gacgggcggc atgggtctcg ggctcgctat cgtcaaagcc gcggcaaatt
      601 cccacggcgg agatgtcgaa cttaggaacc gtgccgaggg cggccttcgc gcaagagtgt
      661 ctctgccgct cgagctcacc tgacctaact gacacacatc ggacaaacgc gagcaagaac
      721 cacgatgcat tgagttctca ccgatcgcgg cgcctcgctc cccttcgttc cagccgcgat
      781 cggtaacaaa aaggagacgt gggatgatcg aggcgactgc cgctgtccca acctacaatg
      841 ccgaccggta tgttctgagc gtgtgcaagc gctggcacga aggcatggat gtcaacgtcc
      901 gtgagcggca aggcgtgatt cacttcgaaa acgcggtcgc gacctttact ccgtcggcca
      961 atcagctcgt cgtgtcgatt cttgccaagg acgaggaaag cattgcgcat ctccagcacg
     1021 tcgtgatggc gcatcttgag acggcagtcc tgcccaatga gccactgacc ttcgattggc
     1081 ggcgctccgc gaacttcgaa cttcacgctc tctaagaaga gcgacgcgtc gccacggatc
     1141 actgaagctc gaaggtcata gcgacgcaga ctttgagttt ctgctcgcct tccatgatct
     1201 tggtcggtgg agctgcgcgc gcttgcatgg tgaaggcgcc ctcgggaccg acattggccg
     1261 cctcggtctc attgacggag actacacgcg tgacgtgcaa accgagcgag tgcgcataaa
     1321 ggtccgcgcg agcgcgcccc agcgcgatcg ccttcacacg cgcttcgtca agcgcttcgt
     1381 cgggccgatc gatagtgaag acgggtccgt tgatttgatt ggcgccctgc gcgacgagtg
     1441 cgtcgagaat cggcccggcc ttcttgaggt cacgcaatcg cacccggatg gtgttcgttg
     1501 cactgtaacc gacgagttgg ggcgcctcgt tctcgggata gcgatattcg gggttgagcc
     1561 ggagatcgct ggtctggata tcggagtcgc tcacgccggc acgcctcagc acgttcgtca
     1621 tccgctcgat tcgtgaactg ctctcgccaa gtgcgctggc ggcattggtc gatcgcgaaa
     1681 ttacgcccgc cgagacgatg gcgacgtcgg ggacccttgt gacctctgct gcagcgacga
     1741 catcgagacg tgtcccagca atattctgat tgaccagcgc ctgctgcgct gaagcgcgcg
     1801 acgtcagcat tgcaaagccc agggcaaatc ccaatcccac ggatttcatc ggttgatcct
     1861 ttgcagttcg ttccacgtcg ttaacgactg ctcaaaatca actggctctt ggctgaaccg
     1921 gcttcaggtg cggcgggcag ccaccaagcg atagatcagc agcaggatga ttgcgccgac
     1981 gacggcagcg acgaagccgg cgccttcgcc agtcttatac caaccaattg cgtgaccgat
     2041 ccatccggca agaagcgcac cggctatccc aagcaggatc gtgatgatgc acccgcccgg
     2101 atctttgcct ggcatgagca gcttggcgat cgctccagcg atccccccga taacaatcca
     2161 gccgatgatg ccataatgtt ccatggactt ggacctttcc ccgtttattc cgctgttcaa
     2221 cttggcttca ttacagcagt gccaacgcgc gcttgcgtcg ctggtgccac cgttagtcga
     2281 aaacgcatag cgccggggcg ccgcttaggg tctggcggcg aacagtcgag gaggcgcagg
     2341 ggaagtgttg cgccgggtga cttattcgtg taatacagtc caactcgggc ctgtgcagag
     2401 aatcacgaaa acggtgggca gggaatttat gaaccgcgaa acgaccattc actcgtccga
     2461 cacgcttgtg gtcgtcgatc gttcacgtcg caatcgacgg ctgattgtcg ccgccgcggt
     2521 agtcgttgcc cttcttgcgg tcatcttggc catcatgaac cgcagcgcat cggataagca
     2581 ggccgccgcg aacgccgcca aaggcgcggg ccaagtcccg accgtaacca tcgtcgttcc
     2641 cggacgcact caagtagccc ggatggtgac agcaagcggt ccattggccg ccaagcgtga
     2701 ccagccgatt ggaatcgctg gtgccggtgg gcgcgtcacg cgggtcctag ccgacgcggg
     2761 gacctgggtc cgcgcgggac aggtactcgc agtcgtcgat cgctccgttc agacacagca
     2821 ggctgcgcag cagtcggcgc agatcgaagc cgccaaggcg caggcagcac ttgcacagtc
     2881 agactatgac cgcgccattg cgcttcaggg gcgtggattc atttcgaagg ctgaaatcga
     2941 ctccaagaag gctagtcggg acgcggctta cgcccaggtg cgcgttgccc aggcgcaact
     3001 cggcgcgacg cgtgcgcaga tcggccaact aaacgtgatc gctccggccg cagggctggt
     3061 cctcgcgcga tcggtcgaag tcggccagac cgtcgggccg gcaagtggcg cgctgttccg
     3121 tatcgccgaa ggcgggcaga tggagatgcg cgcgcagcta tcacagcagg acctagccaa
     3181 tgtccacgta gggatgcccg cagaagttac gcccgtggga tcgtccacca gcttcaccgg
     3241 tacggtctgg caagtagcgc cggtgatcga tgcccaatcc cgcctcggtg aggttcgaat
     3301 tgcggtaccc tacgcgcccg caatgcgtcc gggtggcttt gcgcaagcga agatcagcag
     3361 tggctcgaca gcggcgccgc tccttccgca aagtgcggtc ctgagcgacg agaagggcaa
     3421 ctacgtctat attgcgaatg cgcgcaatga gatcgaacgc cgccccatca agatcggcac
     3481 ggtcgacgac ggcggcgtca cgatcgcgtc cgggctttca ggtgatgagc gtgtcgtcct
     3541 ctcggccggt ccgttcctga acccgggcca gaagatcaac ccgcggcgcg aagcggcaca
     3601 atagccgttc gcccccgaat agaagtcgag atctgaatga atttccggaa catatcttcc
     3661 tggtgcattc gcaacccggt cgcgccgatc gttctattcg tcgggctcat gcttgcaggc
     3721 ctcattgcct tctacggcat gcaggtgaac aacaacccgg atatcgactt cccggccgca
     3781 tcggttacgg tcgttcaacc gggcgccgcg ccaaacgagc tcgaaactca ggtcacgcag
     3841 cgtgtcgaat ccgcgatccg aggagtgaac ggcgtcgacg aaatcgacag cacggtcact
     3901 gaaggctcga gcaacacctt cgttcagttc aagatcggca ctccaaccga ccgcgccgtg
     3961 aacgatgttc gaaatgcgat cgcgcagatt cgaagcaacc tgccagaggg aattctcgag
     4021 ccgcagatcg agaggatcga catcgccggc gggcccatca tggcggtcgg cgcgcagacg
     4081 agcgacatga ctttggaaga gctgagctgg ttcattgaca acactgtgtc caagcgcctc
     4141 cttggacttg agggtgtcgc ggctgttacg cgaaccggtg gcgttgaccg cacgatccgc
     4201 gtgatcctcg atcctgccga gcttcaggcg caagggatca ctgcgtccga agtcaataac
     4261 cagctgcgag caagcaatct caatgcgacc ggcggccgcg ctgaggtcgc cggttcggaa
     4321 cagtccgttc gcgtgcttgg caacgctcag aacgcctatg atctgtcgca aacgcagatc
     4381 gcgttaccgg gtggtcggtt cgttcgtctc gccgacctag gaaaggtcga agattcctat
     4441 tcagaacaac gcagcatcgc aaagatgaac ggcaagcagg ttgtcacgtt catggtgcag
     4501 cgcgccaagg gttcgtcgga agtcacggcc tatgatcaaa gctgggacga acttcgtaaa
     4561 atcgaaaaag acaaccccaa ggtccacttc gccgagatct tcaacaatgt cgactatacg
     4621 aagaagcagt attcctcggc gatggagggc ctcgttgaag gcgcaatact cgctgtactc
     4681 gtcgtcctgc tgttcctgcg cgatattcgc gcaaccctga tttcggcgct cgccatcccg
     4741 ctttcggcga tcccggcgtt ttggttcatg aatctcctcg ggatcaccct caacgggctt
     4801 tcgcttcttg cgctaagtct cgttgctggc gtgctcgtcg atgatgcgat cgtcgagatc
     4861 gagaacatcg tgcgccacat gcgaatgggc aaatccgcct accaggcggc actcgatgcc
     4921 gccgacgaga tcggacttgc cgttcttgca acgaccatgt cgatcgtcgc cgtctttctt
     4981 cctgttgcac tgatgcccgg aatctcgggg cagttcttca aggcgttcgg cttcaccgtg
     5041 gtggtatcgg tgctgatgag cctcctcgtc gcgcggatga tcacgccgct aatcgcggca
     5101 tatttcctgc ggtcccatgg cgaacagccc cacgcagcct ggaaatggat ggacgtatac
     5161 ctgcgggtgc ttagctggag cttggatacg agaaaggcca aggcgcggat tgccgcactg
     5221 ccgcacgccc gcagccatgt ctggtattac ttcgccgcgg cgatcccggt tctcctgatc
     5281 gcttgcgtct tcgtcatcag tttcggagca gccgtaaaag gggctactgc agcacagctg
     5341 ccactaaccc tatgcatcgt ggtcgcattg gtcgcagcgt tcgtaatcac ctacgctttt
     5401 gcaaaacttg ttggacttct ccttagcacg gtcggcggcg gatttggcga atggtggaac
     5461 agcatagcgg ttggctactg gaatgccatg ttgcacgatc atcgcatcgc aatggtcggc
     5521 gctggattcg gcgcgctggt gcttagcggt ctgctcttcg cttccctccc aatgacgttc
     5581 cagcccgcca ttaacgcgga cgattccgac gtgaacttca ctcttccgcc gggagcgacg
     5641 ctaaagcaga gtgaagccgt cgcggatcgc attgcagcga tcctcaagcc gcagcccgag
     5701 gtcgagcgtg tctacgagcg cgtgaatgtc ggttccggtc acgtcagcgc cgtacttaag
     5761 aaggaccgca agaaaaccag caccgaattc gagcgcagct tagcccctgc cctttcagct
     5821 atcccggatg ctcgagcgag cttccagagt cagaatggcg gcggcccatc cggtgattcg
     5881 cgcgacatca tgctctatct cggcggcgaa gatccggttg aactcaatgc agtcgcgaac
     5941 aagattgccg acgaaatggc gaccattcct ggcctgcgcg cgccgcgcgt tgccggcgac
     6001 ctcgcgcagc ctgaaataac cattaagccg cgctttgatc tggcggccga cctcggggtg
     6061 acgacgtcgg cgttgagtca gacaatccgg attgcgacgc ttggcgacat cgaacagaat
     6121 agcgccaaat tctcgctgtc ggatcgacag attccaatca ccgtttcctt gtcggaaaat
     6181 gcacgacgag acctctcaac gcttgagaac ctcccagtac cgacgtcaaa cggcaattca
     6241 gttccgctga aggcggtcgc ggacattgga ttcggctcgg gcccgacgac aattcagagg
     6301 acgaaccaga tccgccgcat cgccgtcggc gcggatctcg ctcccggtgt tgtaagcggt
     6361 gacgtgtggc cgaagatcaa caacctgccg acgttgcagc accttccgca gggcgttcaa
     6421 aagctgaacc tcggcgacca gaaatggcag ggcgagctga tctattattt cgtgctggca
     6481 ctcatggccg gcgttcttct cgtcttcgcg gtgctggtac ttctctaccg ccgtttcctc
     6541 gcgccattcg tcaacatggg ttcgctggtg ctcgcaccgc tcggtgctgc aatcgctctt
     6601 catatcgctg ggcagccagt ttccttgccg gtgctcatcg gaatcctgat gctgttcggg
     6661 attgttgcga agaactctat tcttctcgtc gatttcgccg tcgaaatgat gaaccatggc
     6721 atgaaaaaga acgaggcaat tcgcgaagca ggccacaagc gcgcccagcc gatcgtcatg
     6781 accacggtgg cgatggtcgc cggcatgctt ccaatagcct tgtcgctcag tggcgacgcg
     6841 agctggcgcg caccgatggg agtgacggtt atcggcggcc tcattttctc aacactgctg
     6901 acgctgcttc tagtccccgc ctatttctcg atcgcaatct cgatcgaatc tcgcattggc
     6961 cggctcttcc accgtctcat cgggagtgat gcgcacgcgg cggcttatcc ggttccggcg
     7021 gagtgacgtt gccgaagtga actcaagccg tggctcagct attgagcccg gaatgagagc
     7081 aatgacaaac ggagccttgt cacgcttcaa ccctgctcaa ccgggcgctc agggcatgaa
     7141 ggtcgtcgcg accggcttgc tgctcgtaat ggcggcagtt ttcttcgctg cgcgagctgt
     7201 tgagacgcag catccctggt taaactacgt caagtcattc gcggaagcgg ctatggttgg
     7261 cggacttgcc gattggttcg cagtcaccgc tctcttcagg catccactcg gactaccgat
     7321 accccatacg gcgatcatac cgcgcaacaa ggaccggatc ggcgaagcac ttgcgacctt
     7381 ccttcgcgag aatttcctca tcccgtcagt cgtggcccgt cgcatgcggc gcctcgacgt
     7441 cgccgcagca gccgggcgat tcctgcgcac gccctcgggt gaaggcacgc gcattcgagc
     7501 aggagcctcg cgcctcatcg ccgacatgtt cgaaagtctg gacgacgaac gtctcggcgg
     7561 catcgtcaaa ggcgcaatct cctcgcggtt gcgtaagatg gaaatatcac cgctgctcgg
     7621 tcatgcgctc gcctcggcga tcaacgaaga ccggcatgtg ccgatgctgg aggccgcgat
     7681 ccggtggact gcgcgtgctc ttgacgca
//
LOCUS       DASRBJ010000351         6851 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_652209,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000351 DASRBJ010000000
VERSION     DASRBJ010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6851
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_652209"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..861
                     /locus_tag="VE968_09695"
     CDS             <1..861
                     /locus_tag="VE968_09695"
                     /inference="COORDINATES: protein motif:HMM:NF018017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ELM1/GtrOC1 family putative glycosyltransferase"
                     /protein_id="HZU52133.1"
                     /translation="LVLGIGQRSAPVARYIQRASGGRTKTVRLGDPMVSHKLFDLVIT
                     TTQYAVRDADNVVRLPITITNENAVQPNNLEEQWLEGFSRPRRLLVIGGKTSLWQFDE
                     QVVTTALQTLEERVAIEGGSVIAVTSPRTSRELVAAAEERLGEQAVVTGHFPRYGALL
                     NGADEIHVTGDSVSMLSDAVTSGKPVGLIPLQPNRLAKFLEWAGKVRGRPFRMRDLEK
                     FWNDLRARGLVGTIEHPRFGTLDVSPREIAVAAVRATLEGRSPKRRVKPRGKTIAAGP
                     SAPAAPVALR"
     gene            complement(854..1657)
                     /locus_tag="VE968_09700"
     CDS             complement(854..1657)
                     /locus_tag="VE968_09700"
                     /inference="COORDINATES: protein motif:HMM:TIGR01459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01459 family HAD-type hydrolase"
                     /protein_id="HZU52134.1"
                     /translation="MSFLDTLDPKYRLILCDVWGVVHDGVTLYRGAADRLRRWRDEHR
                     CVCLITNAPRTADAVEAQLARIGLPRNAYDFVATSGEAGIEALNERSDPVGFLGTPQD
                     REILEARGVRITDSSEFSAIACTGLRESQPEPQDYVQELEVWRARDVEMHCLNPDRVV
                     VRGGMIEPCAGAIADIYQDLGGHVTWYGKPHQAIYKHALHRSGNPPATDVLAIGDGLQ
                     TDMLGAARMGFDAVFVTGGIHAGQPFPSDFAQSQELGAWHPVAVVGSLT"
     gene            complement(1654..2451)
                     /locus_tag="VE968_09705"
     CDS             complement(1654..2451)
                     /locus_tag="VE968_09705"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070567 - cytidylyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="manno-octulosonate cytidylyltransferase"
                     /protein_id="HZU52135.1"
                     /translation="MNTAIVIPARYQSSRYPGKPLVPLRGVTGTSKPLILRSVEAARR
                     VRNVSGVFVATDDDRIADICTRFGVGVIMTSSTCLNGTERCAEALDSLHGPDLIVNFQ
                     GDALLTPPSFVEALISRMQDDAEALVATPAIRLRSSEVRTLQKEEAVGRVGGTTVVTD
                     DHGHALYFSKRLIPHLPTSALAGEMSPMRLHVGIYAYRPGALKQYASVSPGELEMLEG
                     LEQLRFVAAGMPVAVVDVETPSFALRELNNPEDVEPIEKALALAGLE"
     gene            complement(2448..3425)
                     /locus_tag="VE968_09710"
     CDS             complement(2448..3425)
                     /locus_tag="VE968_09710"
                     /inference="COORDINATES: protein motif:HMM:TIGR00393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HZU52136.1"
                     /translation="MAADNPNPVGVLDFGRAILHDEARALDALADSLADPFEHAVQLI
                     LSCKGKLIVSGLGKSGHVGRKIAATFASTGTTAAFLHLAEAIHGDLGMAAKGDVAILI
                     SQSGETTELEAVIDHFEHARIPIIAITGHSGTMLSDAATAALVLPHWPEVGPESVAPT
                     TSTTMTLALGDALAMTVMRQRGFSRSDFGRLHPGGSLGARLRPVRRLMHAGKALPLTR
                     EDSSMHDTVVEMSAKRLGVIGVTDANGHLVGVITDGDLRRNIERGLDHTAAEFMTRDP
                     KTVHPDDLIDDALPLFDEYRITALFVVEEDATGKTPVGVLHIHDCPAAR"
     gene            3517..4833
                     /locus_tag="VE968_09715"
     CDS             3517..4833
                     /locus_tag="VE968_09715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
                     /protein_id="HZU52137.1"
                     /translation="MAKRLTAYILIALVFGIIAGWAINAAIDDGTAASAARLKSIADY
                     LSIVTILFLRLIKMIIAPLVFSTLVAGIAHMGDVAALGRVGVRSILWFVLASLVSLTL
                     GLILVSLLHPGVGLNLPIPPASAASGVETATFNLKDFVSHLVPQSIFEAMSTNEILPI
                     VVFSLFFGIALTAVGERGKPVVHGVEALVRVMLQVTDYVMRFAPLAVFTAVASALTER
                     GPQIIATLGKFVACFYLGLFVLWAALIGAAFLIVGGRTAKLVRYIREPALLAFSTASS
                     EAAYPRTLEALDRFGVPARIASFVLPLGYSFNLDGSMMYMTFATMFIAQAYGIHLTLG
                     QEITMLLVLMVTSKGMAGVPRASLVVIAAIMPMFRIPEAGLLLILAVDHFLDMGRSGT
                     NVVGNAVAASVVAQWEGGLISTQPPEIEPAHAPSHAGRDRAVEDHF"
     gene            complement(4834..6033)
                     /locus_tag="VE968_09720"
     CDS             complement(4834..6033)
                     /locus_tag="VE968_09720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014076773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HZU52138.1"
                     /translation="MTLPLERVFAEAAERLRPIALPPPISTAERLQRLLRARQLMQKN
                     GIGSIIVESGSSLDYLTGVQWHRSERLTAAVIPSEGAPIIVTPFFERPSVAETLAVPA
                     EIRTWNEDEDPLKLVADFLRERGLAGAPVGFEETDRYFIVDRLQHQLPALRPMSANPV
                     VRALRLIKSPAELALMQTANDITLRAMRHGGESARAGMTPADFSTIIDAATTALGGAP
                     EFSLVLIDEASAQPHGSRKPQLTRAGSTVLFDCGCTVHGYQSDISRTFVFAAEPSAEQ
                     RKVWNQVRDGQQIAIRAAKIGAPAGSVDDAVRAAYESWGYGPGYKLPGLSHRTGHGIG
                     MDGHEPAYLVHGDTTPLEPGMCFSDEPGIYIPGKFGIRLEDCWHMTENGPRFFSQPPN
                     SIDQPFG"
     gene            6174..>6851
                     /locus_tag="VE968_09725"
     CDS             6174..>6851
                     /locus_tag="VE968_09725"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZU52139.1"
                     /translation="MFDSAFQQGVKRPGTLEMTAILAALMALNSFAIDAMIPALPQIG
                     QSLNVARENQRQLVVIAYFLGFGSTQLLWGPLADRFGRKPILAAGVLLYAAFALLCGI
                     AWTFPVLIAARVCQGASAAVTRVLVVAMVRDLFEAEAMARVMSLVSMVFMVMPVLAPN
                     IGQLILLFAPWRAIFLVLAGYAMVMLAWSGIRLPETLHPEYRRSLHLGEISRAIRASL
                     ADPLSRGY"
BASE COUNT         1303 a         2096 c         2037 g         1415 t
ORIGIN      
        1 ctcgttcttg ggataggcca acggagcgcg ccggtcgcgc gttatattca gcgagcgtcc
       61 ggtggccgta ccaaaaccgt tcgtcttggt gatccgatgg tatcccacaa gttgttcgac
      121 ctcgtgatta cgacaacgca atacgcggtc cgtgacgcag acaatgtcgt tagattgcca
      181 atcacgatca ccaacgaaaa tgccgttcag cccaacaatc ttgaagaaca atggcttgag
      241 ggcttcagcc gtccccggcg gctgctcgtg atcggtggaa agacatcgct gtggcagttc
      301 gatgagcagg tcgtcacgac tgctcttcag acgctagagg aacgcgtcgc aatcgagggt
      361 gggtccgtga tcgcggtcac cagtccgcga acatcgcgcg agctcgtcgc agccgctgag
      421 gagcgcctag gcgagcaggc ggtcgtgacc ggccacttcc cgcgatacgg agccctgctc
      481 aatggagccg acgagatcca cgtgaccggc gacagtgtct cgatgctttc ggacgccgtt
      541 acatcgggaa agcccgtcgg gctcattccg ctccagccaa accggctcgc caagttcctc
      601 gaatgggccg gcaaggttcg cggtcgaccg ttccgaatgc gtgatctcga aaaattctgg
      661 aacgatctta gggcaagagg cctggtcggc acgatcgagc acccccgctt tgggacactg
      721 gatgtctcac caagggaaat tgccgtcgct gccgttcgtg caacgctcga gggacggtca
      781 ccgaaacggc gcgtgaaacc gcgcggaaag acgatcgccg ctggtccatc ggcaccggcg
      841 gcgccagtcg cgctcaggta aggctaccga caaccgctac tgggtgccaa gcgccaagct
      901 cctgagattg ggcaaaatca ctcgggaagg gctgcccagc gtgtatgccg ccggtcacga
      961 agacagcatc gaagcccatg cgcgcggctc caagcatatc ggtctggaga ccatcgccaa
     1021 ttgcgagcac gtccgttgcc ggcggatttc ccgagcgatg caaagcgtgc ttgtagatcg
     1081 cttgatgcgg tttgccatac caggtcacgt gaccgccaag atcctggtaa atgtcagcaa
     1141 tcgctcccgc gcagggttca atcatgccgc ctctcaccac cacccggtcg gggttgaggc
     1201 agtgcatttc cacgtctcgt gcgcgccata cttccaactc ctgaacatag tcttgtggtt
     1261 cgggttggct ctccctcagg cccgtgcacg caatcgcgct aaattcggaa ctgtcggtga
     1321 tgcgaactcc ccttgcctca aggatctccc gatcttgggg cgttccaagg aagcccacgg
     1381 gatcggaccg ttcattgaga gcttcgattc cggcttcgcc gctcgtcgca acgaaatcgt
     1441 atgcgttcct tggaagtcca atgcgggcaa gttgcgcctc caccgcatcg gctgttcgcg
     1501 gtgcattcgt gatcagacac acacatcgat gctcgtcgcg ccagcggcgc aagcggtcag
     1561 ccgctccacg gtagagcgtt acgccgtcat gcacgacgcc ccacacgtca cacaggatca
     1621 atcggtactt gggatcgagc gtgtcgagga aactcactcg agaccagcca acgcgagcgc
     1681 cttctcgatc ggctccacgt cctccgggtt attgagctcg cgcaaggcga aagagggcgt
     1741 ctctacgtca acgacggcta cgggcatgcc ggcggcgaca aaccgcaatt gttcaaggcc
     1801 ctcgagcatc tcgagctcgc caggcgaaac cgacgcatat tgcttaagcg cgcccgggcg
     1861 ataggcgtag attccaacat ggagccgcat cggggacatt tccccggcga gcgcgctcgt
     1921 cggcagatgc gggatcagcc gcttcgagaa atagagcgcg tgaccgtggt catcggttac
     1981 aacggtcgtg ccgccgacgc ggccgacagc ctcttctttc tggagagttc gaacttcact
     2041 gctacgcagg cgaatggccg gtgttgcgac gagcgcctcg gcatcgtcct gcatgcgtga
     2101 aatcagcgcc tccacaaagc tcggcggcgt cagaagcgcg tcgccctgga aattgacgat
     2161 aagatcgggc ccatgaagac tgtcgagcgc ttcggcacac cgctcggttc cattgagaca
     2221 ggttgacgac gtcatgatga cacccactcc gaagcgagtg cagatgtcag cgatccgatc
     2281 atcatcggtt gcaacgaaca cgcccgaaac gttgcgcaca cgacgcgcag cctcgacgct
     2341 gcgaaggatg agcggcttcg atgtgccagt cacgcctctt aacgggacga gcggctttcc
     2401 cgggtagcgc gatgattgat agcgcgccgg tatgacgatt gcggtgttca ccttgcggct
     2461 gggcagtcgt ggatgtggag cacgccgacg ggcgtttttc cggtcgcgtc ctcttccacg
     2521 acgaacagcg ccgtaatcct atattcgtca aagagcggca gagcgtcgtc gatgaggtca
     2581 tcgggatgca ctgtctttgg atcgcgtgtc atgaactcgg cggcggtatg gtcaagaccg
     2641 cgctcgatat ttcgtcgaag atcgccgtcg gtaatgacac cgacgaggtg cccattcgcg
     2701 tcggtcacgc cgatcacgcc cagtcgcttc gcggacatct caacgaccgt gtcgtgcatc
     2761 gagctgtcct cgcgcgtcag cgggagcgct ttgccagcgt gcatcagccg acgtactggt
     2821 cgaaggcgcg caccaagcga gcctcctgga tgcaaccgcc caaagtcact tcgactgaag
     2881 ccacgttgac gcattacggt catcgcgagc gcgtccccaa gcgcgagggt catcgtcgtc
     2941 gatgtcgtag gcgcgaccga ttcagggccg acctcaggcc agtgaggaag cacgagagca
     3001 gcagttgccg catccgatag catcgtgccg gaatgaccgg tgatggcgat aatcgggatt
     3061 cgcgcatgct cgaaatggtc gatcaccgct tcgagttcag tggtttctcc gctctgcgag
     3121 atgaggattg cgacgtcgcc ctttgcggcc atgccgaggt cgccgtgaat tgcctcggcg
     3181 agatgaagga atgccgcggt ggtgccggtc gatgcaaagg tcgccgcgat cttgcggccg
     3241 acgtgcccgg atttgccaag gccactcacg atgagcttgc ctttgcagct gagaattagc
     3301 tggactgcat gctcgaacgg gtcggcaagg ctgtcggcaa gcgcatcgag cgcgcgcgct
     3361 tcgtcgtgaa ggattgctcg cccgaagtcg agcacgccca cggggttggg attgtcagca
     3421 gccattgtcc gagcgcccta gccctcgcaa ttcatgctgt gaagcgcttg acgtcgcttg
     3481 aagtgacggc ttgggtctcc ggaagaaggg gaaatcatgg cgaaacgact gaccgcttat
     3541 atccttattg cactggtttt cggcatcatt gcgggctggg caatcaatgc tgcgatcgac
     3601 gatggaaccg cggcaagcgc ggctcggctg aagtcaatcg cggactatct cagcatcgta
     3661 acgatattgt tcctccgcct catcaaaatg atcatcgcgc cattggtctt ctcaaccctc
     3721 gtggcgggaa ttgcccacat gggcgacgta gcagcgctcg gccgcgtcgg cgtccgctcg
     3781 atcctctggt tcgtccttgc aagcctcgtg tcgctcaccc tcgggctgat cctcgtgagc
     3841 ctgctccatc ctggcgtcgg cctcaatttg ccaattccac cggcctcggc ggcaagcggt
     3901 gtcgaaaccg ccacgttcaa cctcaaggac tttgtttcgc acctcgttcc tcagtccatt
     3961 ttcgaggcca tgagcaccaa cgagatcctt ccgatcgtgg tattttcctt gttcttcgga
     4021 attgcgctca cggccgtcgg cgaacgcggc aagcctgttg tccacggtgt tgaagccctg
     4081 gtccgggtca tgctccaggt aaccgattac gtgatgcgct ttgcgccgct tgccgtcttc
     4141 acggccgttg caagtgctct gactgagcgt ggtccccaaa tcattgccac actcggcaag
     4201 ttcgttgcct gcttctacct tgggcttttt gttctatggg cggcgctgat cggcgctgcc
     4261 ttcctgatcg ttggcggccg aaccgccaag ctcgttcgat acattcgcga acccgcactc
     4321 ctcgcttttt ccacggcttc ttccgaagca gcttatccaa gaactctcga ggcactggac
     4381 cgcttcggag ttccggcgcg aattgcaagc ttcgtccttc cactcggcta ctcgttcaat
     4441 ttggacggct cgatgatgta catgaccttc gcgacgatgt tcatcgcgca ggcctacggc
     4501 atccatctta cgcttgggca agaaatcacg atgctcctcg tactgatggt tacctcaaag
     4561 ggaatggctg gtgtcccgcg agcaagcctt gtcgtgattg ctgcgatcat gccgatgttc
     4621 cgaattccgg aagctggcct gttgttgatc ctcgccgtcg atcacttcct cgacatggga
     4681 agatcgggaa cgaacgttgt tggaaacgcg gtcgctgcaa gcgtcgttgc gcagtgggaa
     4741 ggcggcctca tatccacgca acctcccgag atcgaaccag cgcacgcgcc ttcccacgcc
     4801 ggacgggatc gagccgttga ggatcacttc tgatcagcca aaaggctgat caatgctatt
     4861 cggtggctga ctgaaaaatc tcggcccgtt ttcagtcatg tgccagcagt cctcgagccg
     4921 gatgccaaat ttgcctggaa tgtagatccc aggctcgtcc gagaagcaca ttccgggctc
     4981 cagcggagtt gtgtcgccat ggacgagata ggcgggttca tgcccgtcca ttccgatccc
     5041 gtggccagtg cggtgcgaca atcctggaag cttgtagcct gggccatagc cccagctttc
     5101 gtacgccgcg cggacggcat cgtcgacact gcccgccggc gcgccgattt ttgccgcgcg
     5161 gatggcaatc tgctgcccat cacgaacctg gttccagacc tttcgctgct cagcggatgg
     5221 ctcggccgca aaaacgaacg tccgcgatat gtctgactgg tagccatgaa ccgtgcagcc
     5281 acaatcgaac aggaccgtgc ttcccgcacg agtgagctgg ggcttgcgcg agccgtgcgg
     5341 ctgcgccgaa gcttcgtcga tcagcaccag tgagaactca ggcgcgccgc caagcgcagt
     5401 cgttgccgcg tcaattatcg tactgaaatc agcgggcgtc atccccgctc gggccgattc
     5461 tcccccatgc cgcatcgcgc gcagcgtaat gtcgtttgcg gtttgcatca gggcgagttc
     5521 cgccggtgat ttgatcagcc taagtgcgcg cacgacaggg ttcgcactca tggggcgaag
     5581 tgccggaagc tggtgttgca gccggtcaac gatgaaatat cgatctgtct cctcgaaccc
     5641 gaccggggct cccgccagtc cccgctcgcg caagaaatcg gcgacaagct tcagaggatc
     5701 ctcgtcctcg ttccacgtgc ggatctcggc agggacggcg agtgtttcgg caacggaggg
     5761 ccgctcgaaa aagggcgtta caatgattgg agcgccctcc gaagggatca cagcagccgt
     5821 gagccgctcc gatcggtgcc actggacacc agttagatag tcaaggctgg agcccgactc
     5881 gacgatgatc gaccctatgc catttttctg catgagttgc cgcgctcgca acaaccgctg
     5941 aagccgctcc gctgtgctga tcggaggcgg aagagcgatt ggccgcaacc tctcggccgc
     6001 ctcggcgaag actcgttcca gcggcaaagt catggcagcc gcgaaggcgc tgcctgcggc
     6061 gaggaatcga cggcgcccga ttggtgattt gaacattatg tccccctttg gtcggcgatc
     6121 agtgttgcat ggcaagagct aatcggccag caggccgacg acaggttccc cgcatgtttg
     6181 attcagcttt ccagcaaggc gtgaagcgcc ccggcacgct cgaaatgacc gcgattctcg
     6241 cggcgctgat ggcactcaac agctttgcaa tcgacgcgat gatcccggcc ttgccgcaga
     6301 tcgggcaatc gctgaacgtg gcccgcgaga atcagcgaca gctggtggtc atcgcctatt
     6361 ttctgggatt tggctcgacg cagctcctat ggggaccact cgcagaccga ttcgggcgca
     6421 agccgatcct cgccgccgga gtgctactct acgccgcctt cgccttgttg tgcggcattg
     6481 cttggacttt ccccgttctg attgccgcgc gcgtctgcca aggcgcgtca gcggcagtca
     6541 cgagggtact cgtcgtggcg atggttcggg atctgtttga agccgaagcc atggcccgcg
     6601 taatgagcct cgtttcaatg gttttcatgg tgatgccagt gctggcgcca aacatcgggc
     6661 aattaatcct gttgttcgcg ccgtggagag cgattttcct ggtacttgcc ggttatgcaa
     6721 tggtcatgct ggcctggtcg ggtatccggc tgccggagac acttcacccc gagtatcgtc
     6781 gttcattgca ccttggcgag atcagccgag ccattcgcgc aagcctcgct gatcccctct
     6841 ctcgcgggta c
//
LOCUS       DASRBJ010000352         6631 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_148255,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000352 DASRBJ010000000
VERSION     DASRBJ010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6631
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148255"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1707
                     /locus_tag="VE968_09730"
     CDS             <1..1707
                     /locus_tag="VE968_09730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase"
                     /protein_id="HZU52140.1"
                     /translation="NEKGTLYIGSQFLFRSRDHGVTWDRISPDLTTNDPVRQRQEQSG
                     GITVDNSSAEMNTTIYSISESPRAAGEIWVGTDDGNLQLSRDAGRSWSNLTSNVGMPA
                     GNWVSWVEASRFNPAVAYVTDDRHQYGDMQPYVYRTSDYGRTWQRLVGPTTPGVRGYA
                     HVIKEDRVNPNILFLGTEFGLYVSVDGGNSWAQFKPNNFPDGLAVRDIALQERKDDLL
                     LATHGRGIWIVDDISPLRALSAATLASTVALIPSGEVEQRIEGQGGWSEGNATYYGDN
                     PPDGAVITYYQRARHVIGRMKIEILDSSGNVVDEIPTSKRRGLNRVVWSMRTKPPLVP
                     PAASLAASSTEGERFLPGTYTVRLTKAGQVVTEPLVIRLDRRATFSPVDRKAQFDAAE
                     RLKGLFRRMSAVVNQINAVRAEAAALAANSAAPSDIKSAVAEFADKADSVRKEIVATK
                     EGGAITGEERLREHVDSIYGAINSVEDRPTSYQMARIDALDRELGEVEREWALLQSGE
                     LRTINARLKASSLPVFTLAAADQAVEVPGGGGRLANLANGLVGTRFYGKVSDLEVTAD
                     KD"
     gene            complement(1801..3243)
                     /locus_tag="VE968_09735"
     CDS             complement(1801..3243)
                     /locus_tag="VE968_09735"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HZU52141.1"
                     /translation="MAEQAELTRPEEKANKLQTVNPATGRPGKSYAQDNIEVARTAAR
                     SAHCAFLEWRRTSFAERGAMLHKAADILRSSSDALSALMTEEMGKTTDEGRAEVEKCA
                     FHCDWFADKASSYLADAPVDIGGGEAFVTFNPIGVILAVMPWNFPLWQVFRAAAPALM
                     AGNGMLLKHASNVPGCALAIADILRQAGLPNDLFCTLLLPSSEVEALIKDDNVAAVTL
                     TGSVPAGRSVATAAGSVLKKCVLELGGSDAYVVLEDADVKAAAKVAATARMVNGGQSC
                     IAGKRFVVVRSIIKEFEEALVEEMRGFTMGDPTQAGTKLGPMVSVKARDEIHNQVEAS
                     IAKGARLLLGGYVPDGLGAWYPATVLSDVGAGQPAHDEEVFGPVAAIIAAADEREAIE
                     IANGSEFGLGSGVLTSNIDRGRRIASQELVAGMSFVNENVRSDPRTPFGGVKNSGYGR
                     ECGIFGIREFVNIKTVHVKAVEHASATRVE"
     gene            complement(3277..4167)
                     /locus_tag="VE968_09740"
     CDS             complement(3277..4167)
                     /locus_tag="VE968_09740"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HZU52142.1"
                     /translation="MRIGFIGLGQMGHGMVLSLLRAGIEVIVYNRTISKAQPLAKSGA
                     IVARDVAEACRCDIVITMLANDQAVEELTFGDKGILASLKANGIHISSSTISVDLSQR
                     LWDEHRRAGQRYVAAPVLGRPDRAAEGELFIVAAGEKQALAEATAIFEALGQGTRVMG
                     DEPPKANLAKLSINFLIATVFESLGEAIALVDRGGLDKHQFLDLLTSTLFGAPIYKTY
                     GALVASDEPPPVGFAAPLGFKDIRLALAASEKLRVPMPFAGVLCDRFIELLATGGEDQ
                     DWSAVGRMAFRDAGEAVSAE"
     gene            4341..4799
                     /locus_tag="VE968_09745"
     CDS             4341..4799
                     /locus_tag="VE968_09745"
                     /inference="COORDINATES: protein motif:HMM:NF014448.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HZU52143.1"
                     /translation="MTIVALLEAHALDPLLEMAELTEQARGDGAIVTFVGIARPESKD
                     GDAVDALVLEHHPTLTKQSLEDIAVSCAQRFDISNVRVVHRCGTIPAGEPIVFAGVAS
                     LHRRAAFDAADYLIDRLKTEAIFWKREIGERGSAWIEPTDDDYADRDRWK"
     gene            complement(5042..5116)
                     /locus_tag="VE968_09750"
     tRNA            complement(5042..5116)
                     /locus_tag="VE968_09750"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5082..5084),aa:Gly,seq:gcc)
     gene            5282..6190
                     /locus_tag="VE968_09755"
     CDS             5282..6190
                     /locus_tag="VE968_09755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017500243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZU52144.1"
                     /translation="MATLGMTESERQTLERFERDVIQPSMTALVILDFWAEWCGPCKQ
                     LSPILDKVALDYGAKGVKLVKIDIEDEKLLAAQFRIQSIPTVYAFYAGRPVADLTNYR
                     TEGQIKRALDQLLTQLKIEPEGAPDQADIIPLIAMGEQVLSDGDAARAANIFAQVREM
                     APDDPAVLGGLVRSLIAAGEKTQAREILDSLPEELAKKPEITRARAQLEVASVTSASE
                     TSVLADRLRADPDDLDTRFELASAMMSNGDRDAAADELLEIIRRDRGWRDGAARERFL
                     QLLEAQGLSDPWSSAQRRRLSAVLFT"
     gene            6187..>6631
                     /locus_tag="VE968_09760"
     CDS             6187..>6631
                     /locus_tag="VE968_09760"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HZU52145.1"
                     /translation="MTRTLRVPLFPLPGAILFPRSQLPLHIFEPRYREMVRDAIDGAG
                     RIGMIQPHRVDDDNRAPLYSVGCIGELVGVEELEDGRFNIVLLGSNRFQLIREADVDA
                     SYRCADVNIGSFNDEEPPPLSLAERAEVEREARRLGDAMGLAVDWE"
BASE COUNT         1352 a         1960 c         1977 g         1342 t
ORIGIN      
        1 aatgaaaagg gtacgctgta catcggctct caattcctct ttcggtctcg agatcacggg
       61 gtgacctggg accggatctc gccggatctc acgacgaacg atccggttcg acagcggcaa
      121 gagcagtcgg gcgggataac ggtcgacaac agctcggccg aaatgaatac gacgatctat
      181 tccatctcgg agagcccgcg agcggccggc gagatctggg tcggaacgga tgacggcaat
      241 ctgcaactgt cgcgcgatgc aggacgaagc tggtccaatt taacgtccaa cgtcggcatg
      301 cctgcaggta actgggtcag ctgggtagaa gccagtcgct tcaaccctgc cgtcgcctat
      361 gtgacggatg atcgtcacca atatggcgac atgcagccat acgtttatcg gacgagcgat
      421 tacgggcgca cgtggcagcg cctcgtgggg ccgaccacgc cgggcgtacg cggctatgcg
      481 cacgtcatca aggaagaccg ggtaaatccg aatatcctct ttctcgggac ggagttcggc
      541 ctctatgtct cggtggatgg cggaaactct tgggcgcagt tcaagccgaa caattttcca
      601 gacggcttgg ctgttcgcga cattgccctc caggagcgca aggacgacct tctcctcgca
      661 acgcacggcc gaggtatctg gattgtcgat gacatcagtc cgctgcgtgc tctctcggca
      721 gcaactctcg caagcaccgt tgcgctcatt ccgagcggcg aagtcgagca acgaattgaa
      781 ggccaaggcg gctggtcgga gggaaatgcg acctattacg gcgacaatcc gccggatggc
      841 gcagtaatca cttactacca gcgcgcgcgc cacgtgatcg gccgcatgaa aatcgagatc
      901 ttggattcaa gcggcaatgt cgtcgacgaa atcccaacgt cgaagcggcg cggtctcaac
      961 cgcgtcgtct ggtcgatgcg gacgaagcca cctctagtgc ctccagccgc atcgctcgcc
     1021 gcaagctcga ccgagggcga gcgctttctt ccaggaacct acacggtccg gctgaccaag
     1081 gctggacaag tcgtgaccga gccattggtg attaggctcg atcgccgtgc gactttctcg
     1141 cctgtcgatc gaaaggccca gttcgacgct gcggaacggc tcaaaggcct gtttcgccgg
     1201 atgagcgcag tcgtaaatca gatcaatgcc gtgcgcgctg aggctgctgc cttagcggcc
     1261 aattcggcgg cgccgtcgga catcaagtcg gccgtggccg aattcgcgga caaggccgat
     1321 tccgtgcgca aggaaatagt tgcaaccaaa gagggcggcg caatcaccgg cgaagaacgg
     1381 ctgcgcgaac atgtcgattc gatctacgga gcaatcaatt cggtcgagga ccggccgacc
     1441 agctaccaga tggcgcggat tgatgcactc gatcgcgagt tgggcgaggt tgagcgtgag
     1501 tgggcgcttc tgcagtcagg tgagcttcgc accatcaacg cgcgactaaa ggcgtcgagt
     1561 cttccggtgt tcacacttgc agcggcagat caggcggtgg aggtaccggg aggcggagga
     1621 cggctggcga acctcgcgaa cggtctggtg ggaactcgct tctacggcaa agtgagcgat
     1681 ctcgaggtga ccgctgacaa ggattaatta gcgatgtttt gtgggtcggt tgaatttctc
     1741 tttgcccact agggaatttc caacgagcaa gaatttccat gtcgagagaa tgcaccaatc
     1801 ctattcgact cgtgttgcag atgcgtgctc gacggctttt acatggaccg tcttgatgtt
     1861 gacgaattcc ctaatcccaa aaatgccgca ctcgcggcca tagcctgaat tcttgactcc
     1921 gccgaacggc gtacggggat ccgatcgcac gttttcgttc acgaagctca ttccagctac
     1981 aagctcttga gaagctatac gacgaccgcg gtctatgttc gacgtgagca cgcctgatcc
     2041 aaggccgaac tcgctgccgt tggcaatttc gatcgcctcg cgctcgtcgg cggcagcaat
     2101 gattgccgcg actggcccga agacttcctc gtcatgggca ggttgcccgg ctccaacatc
     2161 ggatagaacc gtcgcgggat accaggctcc cagcccgtcg ggcacgtagc cgcccagaag
     2221 cagtcttgcc cccttcgcaa tgctcgcttc aacctggttg tggatctcat cgcgagcttt
     2281 gacactgacc atgggcccaa gctttgttcc ggcttgtgtt gggtccccca tggtgaatcc
     2341 ccgcatttcc tcgaccagtg cttcctcgaa ttccttgatg atcgagcgca cgacgacgaa
     2401 gcgcttgccg gcaatgcagc tttgtccgcc gttcaccatc cgggcggtcg cggcgacttt
     2461 cgcagccgct ttaacgtccg cgtcttcgag aacgacatag gcgtcggatc caccaagttc
     2521 gaggacgcac ttcttcagca ctgatcccgc cgctgtggcc acgctgcgac ccgctggtac
     2581 gctccccgtc agcgtgacgg ccgcgacgtt gtcgtccttg atcagtgctt cgacctcgct
     2641 gctcggaagg agcagtgtac agaagaggtc gtttgggaga cccgcctgac ggaggatatc
     2701 ggcaatcgca agcgcacatc cggggacatt gctcgcatgc ttcaagagca tgccgttgcc
     2761 ggccatcaga gctggagctg cggcgcggaa gacctgccat aggggaaagt tccacggcat
     2821 aacggcaaga atgacgccga tcgggttgaa tgttacgaac gcttcgccgc caccaatatc
     2881 gactggcgca tcagcgagat agctactcgc tttgtcggcg aaccaatcgc agtgaaacgc
     2941 acatttctca acctcagcgc ggccctcatc ggtggtcttg cccatctcct cggtcatcag
     3001 cgccgacagg gcgtcgctgc tggatcgaag aatgtcggct gccttgtgca acattgcgcc
     3061 cctttcggcg aagctcgtcc gccgccactc gaggaaggcg caatgggccg atcgggcggc
     3121 ggtacgcgcg acctcgatat tgtcctgcgc gtagctcttg cctggccgac cagtcgcggg
     3181 attcacggtc tgcagcttgt tggctttctc ttctggccga gtgagctccg cctgttcagc
     3241 catgatcgcg atcctcctct aagaaaaacg ggcaagtcac tcggcactta cagcttcgcc
     3301 ggcgtcgcga aatgccatcc gcccgaccgc tgaccaatcc tggtcttctc ctcctgttgc
     3361 aagaagttcg atgaagcggt cgcacagcac gcctgcgaac ggcatgggaa cccgtagttt
     3421 ttcagacgcg gcaagggcga gacggatgtc tttgaacccg agcggggcgg cgaacccaac
     3481 gggcggcggt tcgtctgatg caacaagtgc gccgtaggtc ttgtaaatcg gcgctccgaa
     3541 cagggttgac gtgaggaggt ctaggaactg gtgcttgtcc aagccccccc gatcgaccag
     3601 cgcaattgct tcgccgagag actcgaagac ggttgcaatc aggaaattga tgctcagctt
     3661 ggcaaggttc gccttgggcg gctcatcgcc catcacgcgc gtaccttgac caagggcttc
     3721 gaagatcgcg gtcgcctcgg cgagcgcttg cttttcacca gcagcgacaa tgaatagctc
     3781 accctcggca gcacggtcgg gccttccaag cactggagct gcaacgtagc gctgcccggc
     3841 ccgcctatgt tcgtcccaaa ggcgctgcga aaggtccacg cttatagtgc tcgatgaaat
     3901 gtgaattcca ttcgccttga gacttgccaa gatgcccttg tcgccaaagg tcaactcttc
     3961 gacggcctga tcgtttgcaa gcatggtgat gacgatgtcg cagcgacatg cctcggcaac
     4021 gtcacgcgcg acaattgcgc cacttttagc aagcggctgt gccttgctga tggttcggtt
     4081 gtagacgatg acttcgatgc cggcccgcaa gaggctgaga accattccgt ggcccatttg
     4141 cccaagccca ataaacccta tgcgcatttc gtcgttccgc ttgctgatga ccgcacttca
     4201 actcacgtgt cggattggct ttccgccagc ccccgaattt ttccggaccc tggcgcggtt
     4261 ggacagttga cggcgacaca agcgctcgcg aggcatgagc ccggagctgg acaaaagatg
     4321 ctatcctgcg ttgaagtcgc atgacgatcg ttgcacttct tgaggcacac gcccttgatc
     4381 cgctgctcga gatggccgag ctcacggagc aggcacgtgg cgacggcgca atcgtgactt
     4441 tcgtcggaat cgctcggccg gagtcgaagg acggggatgc cgtcgatgca ctcgtcctcg
     4501 aacatcaccc aacgcttact aagcaatcgc tcgaggacat cgctgtaagt tgtgcacagc
     4561 gcttcgacat cagcaacgtg cgagtagttc atcgctgcgg gaccattccc gcgggcgaac
     4621 caatcgtctt tgccggagta gcatcactgc accgccgagc cgcatttgat gctgccgatt
     4681 acctgatcga ccggctgaaa accgaagcga tattctggaa acgtgagatc ggagaacgtg
     4741 gctccgcttg gatcgaaccc actgacgatg attatgctga tcgggatcgg tggaaatgaa
     4801 atagcggttc ggggccgcga agctcaccgc ccatcgggtc cagccgagga aatcagcgca
     4861 ccggtgatcg cagcgatcgc tccttggatt ttcgcgtgac tcggcttggc accggtcagg
     4921 cgccgtttca cggctcgaat cggtcgggat cgcccatcat catcgccggc tgagcagccg
     4981 gtgtcaccta tgtctccgga acagcgtgca gcctgtgtat ccggaacgga actgtaaaaa
     5041 ttggagcggg cgaagggatt cgaaccctcg accccaacct tggcaaggtt gtgctctacc
     5101 cctgagctac gcccgctctc cggtaacgcc agtgcctcag ggcttatccg gcggaggtga
     5161 gcggcgcgcc tagcatgcca ttgcacgctc ctgcaagtcg ccttcgtggc cgcttgtgac
     5221 tagcggcata gccgcccata tgggcgccgc aaacaagcgt gtgaaaggag ctagggcagg
     5281 cgtggctacg ctgggaatga ccgagagcga acgtcagaca ctcgagcggt tcgaacgaga
     5341 tgtcatccag ccgtcgatga cggcactggt cattcttgat ttctgggcgg aatggtgcgg
     5401 cccgtgcaag cagctttcgc caattctcga caaggtcgca ctggattacg gcgcgaaggg
     5461 tgtcaaactc gtcaagatcg acatcgagga tgagaagctt cttgcggcgc agttccgtat
     5521 tcagtccatt ccgacggttt atgcgtttta cgccggccgc ccggttgccg atcttacgaa
     5581 ctaccgtact gaaggacaga tcaagcgggc gcttgaccaa cttctcaccc aactgaaaat
     5641 cgaacccgaa ggcgctcccg atcaagcgga catcataccc cttatcgcaa tgggtgagca
     5701 ggtacttagt gatggcgatg ctgctcgggc agcgaatatt tttgcgcagg ttcgggaaat
     5761 ggcgccggat gacccagcgg ttcttggcgg cctggtgcgc tcgctaatcg ccgctggcga
     5821 aaagacgcag gcgcgcgaga tactggattc cttgccagag gaactcgcca agaaacctga
     5881 aatcacaagg gctcgagcgc agctcgaagt cgcctcggtc acatcggctt ccgagacctc
     5941 ggtgctcgcg gacaggttac gagcggatcc ggatgatctc gatacgcggt tcgaacttgc
     6001 gtcggcaatg atgagcaatg gcgaccgcga cgctgctgcc gacgaacttc ttgaaatcat
     6061 ccgtcgtgac cgtggatggc gggacggggc ggctcgtgaa cgatttttgc aactgctgga
     6121 agcacaaggg ctctccgacc cgtggtcgag tgcccagcgc aggcgacttt ctgctgtact
     6181 cttcacatga cccgaacgct tcgggttccg ctgtttccgc ttccaggcgc aatcctgttt
     6241 ccccgatcgc agttgccctt gcacatcttc gagccgcgct accgcgagat ggtccgcgat
     6301 gcgatcgatg gtgcggggcg aattgggatg atccagcccc atcgagtcga tgatgacaac
     6361 cgcgcgcccc tttacagcgt cggatgcatt ggcgaactgg ttggcgttga agaactggaa
     6421 gacggacgat tcaacattgt gctgctcggc tccaaccgct ttcaactgat ccgagaagcg
     6481 gacgtcgatg cgtcgtatcg ctgcgccgac gtgaacatcg gatcgttcaa cgacgaggag
     6541 ccaccgccac tttcgctcgc cgaacgcgct gaagtcgagc gggaagcacg cagattggga
     6601 gatgcgatgg gtctagctgt cgactgggag g
//
LOCUS       DASRBJ010000353         2764 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_200008,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000353 DASRBJ010000000
VERSION     DASRBJ010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2764
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200008"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..196
                     /locus_tag="VE968_09765"
     CDS             <1..196
                     /locus_tag="VE968_09765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hotdog domain-containing protein"
                     /protein_id="HZU52146.1"
                     /translation="PIHLRDLISVYARVERVGRTSMAVRIEVVAHRDLGATEVKVTEG
                     VFTFVALDRENRPRPVDEQA"
     gene            complement(201..815)
                     /locus_tag="VE968_09770"
     CDS             complement(201..815)
                     /locus_tag="VE968_09770"
                     /inference="COORDINATES: protein motif:HMM:NF025137.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4167 domain-containing protein"
                     /protein_id="HZU52147.1"
                     /translation="MINNRQGGRRRGRGGQRGQNLGGPSSNRQDNRQRGNAAQLLEKY
                     KNMARDAQLAGDRVQTEYYLQFADHYFRVLSENRARFEDQRRSREDDLDEDEGEEDLG
                     EASEDQSVDERPQRQERNERFSRRDRPRRDEREERAGRDSNESEQRQVNGGGETIPFD
                     VLPPAISRDGGDTEEVMEEQPRRPRRRARAPRPTDGEEGMAPAA"
     gene            complement(1057..1884)
                     /gene="prmC"
                     /locus_tag="VE968_09775"
     CDS             complement(1057..1884)
                     /gene="prmC"
                     /locus_tag="VE968_09775"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HZU52148.1"
                     /translation="MKAIARALADATRKLSETSDTARLDAELLMAEALHIDRDRLILA
                     PPDRAVPKRFWSMLSRRMNGEPVAYITGRRAFWNIDLHVGPGVLVPRPDSEVLISSAI
                     EHFEGGEGPRRILDLGTGPGTLLLAALDIWPNSNGVGIDVSRRAMSYAAANARRLGLE
                     RRVVFRRGDWAEGLDEKFDLILCNPPYIAEGAQLGPGVREFEPDEALFAGAQGLDAYR
                     ALAPQLPKLLNENGLAAVEIAPDGAGAVTSLLARDGLRAAIANDLADRPRVVLLTWN"
     gene            complement(1881..>2764)
                     /gene="prfA"
                     /locus_tag="VE968_09780"
     CDS             complement(1881..>2764)
                     /gene="prfA"
                     /locus_tag="VE968_09780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HZU52149.1"
                     /translation="DPSAEPELKEMAAAEAEEIRHKLPLAERTLALKLLPRDAADDRA
                     AMLEVRAGTGGDEAALFAGDLLRMYQRYADIQGWKFDLISASASELGGYKEAVASISG
                     PGVFARLKFESGVHRVQRVPVTESGGRIHTSAATVAVLPEAEDVDVQIDDKDLRIDVY
                     RSSGPGGQSVNTTDSAVRITHLPSGLVVIQQDEKSQHKNKAKALKVLRTRLFELERER
                     LANERAGARKSMVGSGDRSERIRTYNFPQGRITDHRINLTKHNLDEVLEGPGLTEIID
                     ALVAEDEAERLAGLEEA"
BASE COUNT          507 a          879 c          803 g          575 t
ORIGIN      
        1 tcccatccac ttgcgcgatc tcatctccgt ctacgcgcgt gtcgagcggg ttgggcgcac
       61 gtcgatggcc gtgcggatcg aggtcgttgc gcatcgcgac ctcggagcga cggaggtcaa
      121 ggtcacggaa ggcgttttca cgttcgtcgc actcgaccgg gagaaccggc cgcgacccgt
      181 cgacgagcag gcataaccgc ctaagcggca ggcgccattc cttcctcgcc gtcggtcggc
      241 ctcggcgcac gagcccgacg ccgcgggcgg cgtggctgct cttccattac ttcctcggtg
      301 tcaccaccat ctcgcgagat ggccggcgga aggacatcga acgggattgt ctcaccaccg
      361 ccattcacct ggcgttgctc ggactcattg gaatcacgac cagcgcgctc ttctcgctcg
      421 tctcggcgtg ggcgatcacg ccgactaaac cgctcgttgc gctcctgtcg ctgcgggcgc
      481 tcgtccaccg actgatcctc gctcgcctca ccgagatctt cctcgccttc atcttcgtcg
      541 agatcatcct cgcggctgcg ccgctgatcc tcgaaacgag cgcggttctc gctcagaaca
      601 cgaaaataat ggtcggcaaa ttgcagataa tattcggttt ggacgcggtc gccggcgagc
      661 tgcgcatcac gagccatatt cttgtatttt tccaggagct gcgcagcgtt gcctcgctgc
      721 ctgttgtcct gccggttact tgaaggaccg ccgagatttt gcccccgttg tccacctcga
      781 ccgcgccggc ggccaccctg acgattgttg atcaaatgcc taggtcctta agactgctcg
      841 tcgctaaccc cttcgcctca gacaggcagg gctgcgccca agcgagcgcg gctctgaccc
      901 tctcgttccg gtgtcaacgc gacgcgttga gcgaacggcc gattgtgtcg gggttgggcg
      961 ggagcgctct tcagctgatc tggagcgggc ccggcccacg aacactgatg tagtgcgaca
     1021 gaaggtcaat gccaagtaat ttcgatcaaa tgcaggttaa ttccacgtga ggaggaccac
     1081 tctgggacgg tcggcgaggt cgttagcgat ggcggcgcgc agaccgtcac gcgcgagtaa
     1141 cgacgtgacg gctccggctc cgtcaggtgc aatctcaacg gcagcaaggc cgttttcatt
     1201 taataatttg ggtagctgcg gtgcgagtgc gcgataggcg tcgagacctt gcgctccggc
     1261 gaacaacgcc tcatcgggtt cgaattcgcg aacaccaggt ccgagctgcg ctccctcggc
     1321 gatatagggt ggattgcaca agatcaggtc gaacttctca tcaagaccct cagcccagtc
     1381 tccgcgccgg aagaccacgc gccgttcgag gccaagtcgt cgggcattag cggcggcata
     1441 ggacattgct cgtcgcgaaa catcgatccc aacgccattc gagttgggcc atatgtcgag
     1501 tgccgccaac agcaaggttc caggacccgt cccgaggtcc agaatccgcc ttggtccttc
     1561 tcctccttca aaatgctcga tcgccgacga aatcaggact tcggaatccg gccgcggcac
     1621 gagcacaccg ggacccacgt ggaggtctat gttccaaaaa gctcgcctgc cggtgatata
     1681 ggcaactggt tccccgttca tgcgccgact aagcattgac cagaagcgct ttgggacggc
     1741 tcggtcgggc ggcgctagga ttagccgatc tcggtcgata tgcagtgcct cggccatgag
     1801 cagttcggca tcaagccgcg ccgtatcgct cgtctccgac agcttccgcg ttgcatcggc
     1861 cagagcgcgt gcgatcgcct tcacgcctcc tccaggccag caagccgctc cgcttcgtcc
     1921 tccgctacta aagcgtcaat gatctccgtg aggcctggtc cttcgagcac ttcgtcaaga
     1981 ttgtgcttgg tgagattgat ccgatggtca gtgatccgtc cttgcgggaa attgtaagtc
     2041 cgaattcgtt ccgagcggtc gccagaaccg accatcgatt tgcgcgcacc agctcgctcg
     2101 ttggcaagtc gctcgcgctc cagttcgaag agccgggtcc gcaagacctt cagcgctttt
     2161 gccttgttct tatgctgtga cttctcgtcc tgctgaataa cgacaagccc cgacggaaga
     2221 tgggtgattc gaacggcgct gtccgtggtg ttaacggact ggccgcctgg ccccgatgaa
     2281 cgatacacgt cgatgcgaag atccttatcg tcaatctgaa catcgacgtc ttcagcttct
     2341 gggagaactg cgacggttgc tgcggaggtg tggatccgtc ctccactctc ggtgacggga
     2401 acacgctgaa cccggtgcac tccactttca aacttcagac gagcgaatac gccgggtccg
     2461 ctaatcgaag cgactgcttc cttatagccg ccgagctcgg atgcacttgc ggagatcaga
     2521 tcgaacttcc atccctggat atccgcgtag cgctggtaca ttcgaaggag gtccccagcg
     2581 aacagcgccg cctcgtcacc accggtaccg gcccgaacct cgagcattgc tgcgcgatca
     2641 tccgcagcat cacggggaag aagcttcagc gcgagtgtgc gctcggcaag tggtagcttg
     2701 tgccggattt cctcggcttc ggccgccgcc atttccttaa gctccggctc agcgctcggg
     2761 tcag
//
LOCUS       DASRBJ010000354         4011 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_454797,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000354 DASRBJ010000000
VERSION     DASRBJ010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4011
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_454797"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..3837
                     /gene="rpoB"
                     /locus_tag="VE968_09785"
     CDS             1..3837
                     /gene="rpoB"
                     /locus_tag="VE968_09785"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HZU52150.1"
                     /translation="MTYAAPLKVTIRLTVYDKDAETGAKTVRDIKEQEVFFGEIPLMT
                     DNGTFIINGTERVIVSQLHRSPGVFFERVPAQGYFLGKIIPYRGSWVEFEYDNKNLLY
                     VRIDRKRKFYGTVFLRALGLKTDADIIRAFYKLTTITLKDNKLFWGVNDSLVGMKLSH
                     AILNKNGEQVVPQGRKITNSVFREIQKNKLEQVEVAVNDLEGAYVATDVIDMSTGEVL
                     IEANHELTAPALNKIAEAGIDTFEVFFPDRDDAGNVISATLRKDSVKAQNDALLEIYR
                     KLRPGDPPTLDTATQLFQGMFFDPRKYDFSRVGRMKFNIKLYDKADATPLDKRTLDQK
                     DFADTILYLLKLRKGLGVVDDIDHLGNRRVRAVGELLENQFRIGLVRMERAIKEKMSV
                     YQEMSTAMPHDLVNAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGL
                     SRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGFIESPYRRVKE
                     GVLVDEVKILNPGSTDFKVGQIVPREEAEAANKAIKGDKQPAEYEAHCDYLSAWEEDR
                     YIIAQANVSIDENGRIVDDLVNARQAGNFVLKHRDEIEYMDVSPKQLVSVAASLIPFL
                     ENDDANRALMGSNMQRQAVPLLRAEAPYVGTGMERVTARDSGAVVICKRSGIVDSVDS
                     ERIIVRVEGGAHEGQMSREVGADIYQLTKFKRSNQNTCISQKPIVHEGQRVKKGDVLA
                     DGPCTEAGELALGRNVLVAFMPWRGYNFEDAIVVSEKLVKEDYYTSIHIEEFEIEARD
                     TKLGPEEITRDIPNIAESFLRNLDESGIIRIGATVKPGDILVGKVTPKGETQLTPEEK
                     LLRAIFGEKAGDVKDASLYCPPGIEGTIVDCKVFSRKGAELDERSKQILQNQEERLHR
                     NLEDEKRILSDERAKRLEELLKGKELLADLHDEKTNKKLLSKDTPLTRDVLEKLRARD
                     LKRMRLSSKDARINEQIDEIEEMTSRQIAVLEKITEEKVAKLRKGDELPPGVIKLVKV
                     YIAMKRKLSVGDKMAGRHGNKGVIARIVPEEDMPYLPDGTPVEIVLNPLGVPSRMNVG
                     QILETHLGWAAAKLGLHFATPVFDGAAERDIKARLAEAGLPSSGKIQLFDGVTGAQFE
                     QPVTVGYIYMLKLSHLVDDKIHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEA
                     YGAAYILQELLTAKSDDVYGRAKIYEAIVKGEAAAEPGVPESFNVLIRELQSLCLDVE
                     LMKKPRELPDLAHAAD"
BASE COUNT          932 a         1187 c         1158 g          734 t
ORIGIN      
        1 atgacctacg cggcgccctt gaaggtcacg atccggctga cggtttacga caaagacgcc
       61 gaaacgggcg ccaagacggt ccgggatatc aaggaacagg aagtgttctt cggcgagatc
      121 ccgttaatga ccgacaatgg cacgttcatc atcaacggca ccgaacgcgt catcgtttcc
      181 cagttgcacc gctcgcccgg cgtgttcttc gagcgcgttc ccgcccaagg ctacttcctc
      241 ggcaagatca ttccctatcg cggaagctgg gttgaattcg agtacgacaa caagaacctg
      301 ctctacgtcc gcatcgatcg caagcgcaaa ttctacggaa ccgtgttcct gcgcgcgctc
      361 ggcctcaaaa ccgatgccga catcattcgc gctttctaca aactgaccac catcacgctc
      421 aaagacaaca agctgttctg gggcgtaaac gacagcctgg tcgggatgaa gctttcgcac
      481 gccattctca ataagaacgg cgagcaggtg gtcccgcaag gccgcaaaat caccaactcg
      541 gttttccgcg aaatccagaa gaataagctc gaacaggtcg aagtcgcggt caacgatctg
      601 gaaggcgcgt atgtcgcgac ggacgtgatc gatatgtcca ccggcgaagt gctcatcgag
      661 gccaatcacg agttgaccgc accggctctg aacaagattg ccgaagcagg tatcgacacc
      721 ttcgaagtgt tcttcccgga tcgcgacgac gccggcaatg tgatttcagc cacccttcgc
      781 aaggacagcg tgaaagccca gaacgatgcg ctactcgaga tctaccgcaa gctgcggccg
      841 ggcgacccgc cgacgctcga caccgccacc cagttgtttc agggcatgtt tttcgacccg
      901 cgcaagtacg atttttcgcg cgtgggccgc atgaaattca atatcaagct gtacgacaag
      961 gctgacgcca ccccgctcga caaacgcacg ctcgatcaga aagacttcgc cgataccatc
     1021 ctgtatctgc tgaagctccg caaaggcctc ggcgtggttg acgacatcga tcacctcggc
     1081 aaccgccgcg tccgcgccgt cggcgagttg ctcgaaaacc agttccgcat cggcctggtg
     1141 cgtatggaac gcgccatcaa ggaaaagatg tcggtctatc aggaaatgtc gacagctatg
     1201 ccgcacgacc tggtaaacgc gaagccggtg atggccgcga tccgcgagtt cttcggctcc
     1261 agccagttat cgcagttcat ggatcagacc aatccgctct cggagatcac gcacaaacgc
     1321 cgcctctccg cgctcggacc gggcggcctg tcgcgcgagc gcgccgggtt cgaagtccga
     1381 gacgttcatc ccacgcacta cggtcgaatc tgccccatcg aaacaccgga aggtccgaat
     1441 atcggtctca tttcgtcact ctcctgtttc gcccgcatca acgaatacgg cttcattgag
     1501 agcccgtatc gccgggtaaa ggagggggtg ctagtcgatg aagtgaaaat tttaaatccg
     1561 ggcagcaccg atttcaaagt cggccagatc gtccctcgcg aagaagccga agcggccaac
     1621 aaggcaatca agggagacaa gcagcctgcc gagtacgaag cccactgcga ctatctctcg
     1681 gcctgggaag aggaccgcta catcatcgcg caagccaatg tctctattga tgagaacggg
     1741 cggattgtcg acgacctggt aaatgcccgt caggccggca acttcgtctt gaagcatcgc
     1801 gatgagatcg agtacatgga cgtcagtccg aagcagctcg tctccgtcgc ggctagcctg
     1861 attccgttcc tcgaaaacga cgacgcgaac cgcgctctca tgggttcgaa catgcagcgc
     1921 caggcagttc cgctgctgcg cgccgaagct ccttatgtcg gaaccggcat ggaacgcgtt
     1981 accgcgcgcg attccggagc ggtggtcatc tgcaagcgct cgggtatcgt cgattcggtg
     2041 gatagcgaac gcatcatcgt ccgcgtcgaa ggcggcgcgc acgaagggca gatgtcccgc
     2101 gaagtcggag ccgatattta tcagctcacg aaattcaaac gttcgaacca gaacacctgc
     2161 atcagccaga agccgattgt ccatgaaggg cagcgggtca agaaaggcga tgtgctcgcc
     2221 gacggtcctt gcaccgaagc cggcgagctg gcgctcggcc gtaacgtgct tgtggccttc
     2281 atgccgtggc gcgggtacaa cttcgaagac gcgatcgtgg tcagcgaaaa gctggttaag
     2341 gaagactact acacctcgat ccacatcgaa gaattcgaaa tcgaagctcg cgataccaag
     2401 ctcggtccgg aggagatcac tcgcgatatt ccgaacattg cggagtcgtt cctccgcaat
     2461 ctggacgaaa gcggcattat tcgcatcggg gccactgtta agccgggcga cattctggtg
     2521 ggcaaggtca cgcccaaagg tgaaacgcag cttactccgg aagaaaagct gttacgggcg
     2581 atcttcggcg agaaagccgg cgacgtaaag gatgcgtcgc tgtattgccc gccgggtatt
     2641 gaaggcacga tcgtcgattg caaggttttt tctcggaagg gcgccgagct cgacgaacgg
     2701 tcgaagcaaa ttctgcagaa tcaggaagag cggctgcacc gcaacctcga agacgagaag
     2761 cgcattctca gtgatgaacg cgccaagcgc ctggaagagt tgcttaaagg caaagagctc
     2821 ctggccgatc tgcacgacga aaagaccaac aagaaactgc tctcgaaaga cacgccgctt
     2881 acccgcgacg tgctcgagaa gctccgggcg cgcgatctga agcgcatgcg gctttcctcc
     2941 aaggacgcgc gcatcaacga gcagatcgac gagatcgaag agatgacttc gcgccagatc
     3001 gccgtgctcg aaaagatcac ggaggagaaa gtcgcgaagc tgcgcaaggg cgatgaactg
     3061 ccgccagggg taatcaagct cgtcaaggtc tacatcgcca tgaagcgcaa gctctcggtc
     3121 ggagacaaga tggccgggcg ccacggcaac aagggggtca tcgctcgcat cgtgcctgag
     3181 gaagacatgc cgtatctgcc tgatggtacg cccgtcgaga tcgtcctgaa tcccctcggc
     3241 gttccgtccc gtatgaatgt cggccagatt ctcgaaacgc acctcggctg ggccgccgcg
     3301 aagctgggct tgcactttgc aactcccgtg ttcgatggcg cggcagagcg cgatattaaa
     3361 gcgcggctgg ccgaagcggg cctgccctct tccggcaaaa ttcagctatt tgacggcgtg
     3421 acgggggcgc agttcgagca gccggtcacc gtcggctaca tttacatgct caaactgagc
     3481 cacctggtgg acgacaagat tcacgctcgc tccatcggac cgtactcgtt aattacgcag
     3541 cagcctctcg gaggcaaggc gcagttcggc ggccagcgct tcggcgaaat ggaagtctgg
     3601 gcgctcgaag cgtatggcgc ggcctacatt ctgcaagagc tcctgacggc gaaatccgac
     3661 gacgtctacg ggcgcgccaa gatctacgaa gcaatcgtca agggcgaagc ggctgccgag
     3721 cccggcgtgc cggaatcgtt caacgtgctc atccgcgagt tgcagagtct gtgcctcgat
     3781 gtggaactga tgaaaaaacc gcgcgagctg ccggatctgg cccatgccgc ggattgatca
     3841 gaaccccgac cgtgagggag gggtgatcag caaacattgc gaacggggcg ccatttgggt
     3901 gccccgcgtc ccgttcgcgg aaaatttaat cgggcccgtg ctgaaggtaa tttaaggaca
     3961 attcatgtat cgttcctctc cgtacgacag agccaatctc atcgccgact t
//
LOCUS       DASRBJ010000355         6902 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_454948,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000355 DASRBJ010000000
VERSION     DASRBJ010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6902
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_454948"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..206
                     /locus_tag="VE968_09790"
     CDS             <1..206
                     /locus_tag="VE968_09790"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HZU52151.1"
                     /translation="RREDGSEVPVTVTDLSDEGCRVECAEPVLRIGEWIEVNVPSEGE
                     LKAQVRWALGGSAGVKFEREANS"
     gene            274..1023
                     /gene="trmB"
                     /locus_tag="VE968_09795"
     CDS             274..1023
                     /gene="trmB"
                     /locus_tag="VE968_09795"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009822115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HZU52152.1"
                     /translation="MTAHKSGDPLTLNRLYGRSSGHKLRKAQQELVEGLLPALSIPLD
                     GELTAARLFGDDRPLHLEIGFGSGEHLADRADMLPDHGFIGAEPFLNGVAAALNHVRE
                     KNLANVRLWRGDALDVLRRLPDESLSFLYLLHPDPWPKARHAKRRMVNDGPVELFAAK
                     LKPGGEFRLATDDPTYLTWSLMIMQRHAGEFDWLAEHPRDFLEPSGGWIETRYGAKSR
                     REGRRPYYLRYRRVAAGDSRTSRASSPSSSK"
     gene            complement(957..2225)
                     /locus_tag="VE968_09800"
     CDS             complement(957..2225)
                     /locus_tag="VE968_09800"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_function: GO:0070968 - pyrroloquinoline quinone binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HZU52153.1"
                     /translation="MRMRVVRYSLCLVVAACGTAATPNGEMNNSSAQAPIAAATSSDP
                     PFATSPIATFDNPWAMAFLPASSEAVVTEKPGRIWLVDVRTGRKQPVAGAPRVVASGQ
                     GGLLDVALSPSFAADKELYLTYAEPSANGGSGLALARARLSASESGARLDDFHLLWHD
                     PAGGEGGQFGAIIAFAPDGKSLFLSSGERQRFTPAQDPNQPLGKILHLTLEGKPAPGN
                     PLAGRTGSPTVMITDPPSDTRAARSAVGRRFTWPGPNLTPAETWSTGHRNPYGLTFDA
                     EGRLWETEMGPRGGDELNLILPGHNYGWPLVSEGENYNGVPIPKPSTRPDLERAKLYW
                     VPSVSPTTLLIYSGKMFPQWKGNGFIGSLSGESLIRVTFSGNNAQKADRWRLGKRIRW
                     VGEGPDGAIYLLEDGDDARLVRLSPAATRR"
     gene            2286..3338
                     /locus_tag="VE968_09805"
     CDS             2286..3338
                     /locus_tag="VE968_09805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008994370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] synthase III
                     C-terminal domain-containing protein"
                     /protein_id="HZU52154.1"
                     /translation="MTMHASSLISLATALPPYVVEQGEAKLRAREAFGGKKALFDRLA
                     PVFDNAGIARRHIVAPPDWYMSAHGWHDRNEVYLKAAEELFIDAATAAIAKAGLKPQD
                     IDGIVAVSTTGIATPSLDARCAKRIGFRNDIRRAPIFGLGCAGGVSGLSLASRLATAD
                     PGSVWLFVTVETCSISIRLDSDDPAAVVATALFGDGAAAAVVTSGKHSLAHIGGSAEK
                     LWPDTLRIMGWDVEDPGLSVVFDRAIPPFVEAELAEAVGEMTAAVGTSASDIDRFCCH
                     PGGVKVIDAIESALDLNQGTLNIEREVLRDYGNMSAPTVMFVLDRLLAQPLPNKVMMT
                     AFGPGFTCAGLMLDAP"
     gene            3335..3832
                     /locus_tag="VE968_09810"
     CDS             3335..3832
                     /locus_tag="VE968_09810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004671 - protein C-terminal
                     S-isoprenylcysteine carboxyl O-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006481 - C-terminal protein methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HZU52155.1"
                     /translation="MILNILILSLVTFERIAELWLARRNTRRLLSLGAREYAPRHYPA
                     IVALHAAWLASLWLFALPHSIRPLWLAFFLVIELGRVWVLATLAERWTTRIIVLPEAP
                     LVGGGPYRFTRHPNYIVVVAEILVLPLAFGLWRIALVFTLLNAVILAIRIHAEDRALG
                     RSQPR"
     gene            complement(3820..5292)
                     /locus_tag="VE968_09815"
     CDS             complement(3820..5292)
                     /locus_tag="VE968_09815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52156.1"
                     /translation="MLFLSWLLLVAWLFWKHVVWRDEVRAFSLALSGSSVGQMLRNVQ
                     GEGHPGLWYLILRALHDVFPTREVLPAAALVIWIAAIALFTWKSPFRTFLVALVLFSL
                     FGAFDYAVIARNYGIAALVMFALAAVYPRVKRTLWFGLVLAVLANTNVPSTILAGAFL
                     LFRFFEMLTDGKPTIRDWSIFAGNAFLSLVGAFLSFVLVYPPMNEGAVSLNYGHITLI
                     SIAAALADGTKGFSNLLLNAHGLAPPIILWTSCLAFVRRPPALLAALAGLAGLKLFFF
                     FVYPSGYRHEALFVVFLLALAWIEHESVDRASEDKAWTQRVALIGRAALLLVLAAQTL
                     DLGKPLLLQAKGLPFSQSANAARLIERPDLKRAIVIADPDLMLEPLPYYIDNPLWFLR
                     EERFDRLFFKTSSERQQISLDTILVDAARLNQTYRRPVVILLQTDLDAAKPGAHLTMY
                     RDSTSVSQAAIGRFRRSTRLVARLGPAITDEHYDLYVYRG"
     gene            5474..6343
                     /locus_tag="VE968_09820"
     CDS             5474..6343
                     /locus_tag="VE968_09820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007015713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HZU52157.1"
                     /translation="MIDGLQIAVILPAFNAARTLERTYNEIPHEIVDDVILVDDASTD
                     DTALIAGKLGIHTIIHARNGGYGANQKTCYAQALARGADIVVMLHPDYQYSPRLITAM
                     AAMIASGHYDAVFGSRILGGGALRGGMPVYKYVANRLLTGFQNLLLGAKLSEYHTGYR
                     AWRREVLERLPLAACSDDFIFDNQMIAQALWAGFRVGEISCPTKYFPEASSINFQRSC
                     TYGLGVLQTSVVFRLCRWDLGKSALFADGPPLPALTALPSMTVTEPLTRDSPSLLTSL
                     TLEGKQKLIGEAA"
     gene            6479..>6902
                     /locus_tag="VE968_09825"
     CDS             6479..>6902
                     /locus_tag="VE968_09825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor"
                     /protein_id="HZU52158.1"
                     /translation="MTDVAALARQIEPEVKSLGYELVRVAMIGGTSDPTLQVMAERPD
                     TRQLDLSDCETISRRLSDWLDQNDPVEGSYRLEVSSPGIDRPLTRQSDYSDWAGHEAR
                     ITLADQRDGRKQFSGTLQGIENGNVTLVDKSGQSHILPF"
BASE COUNT         1367 a         2088 c         2111 g         1336 t
ORIGIN      
        1 ttcgtcgcga ggatggatcg gaagtgccgg tgacggttac ggacctctcc gacgagggct
       61 gccgcgtcga atgcgcggag ccggttcttc gcatcggtga atggatcgag gttaatgttc
      121 cctccgaagg cgagctcaag gctcaggtaa ggtgggcgct tggcggcagc gcgggcgtca
      181 agttcgagcg cgaggcaaat agctaggcaa acgctcgtcg aagccgcgca acattgctgc
      241 gtgtccacgc gcgaagtagg cggcattttc acgatgactg cgcacaagtc cggagacccg
      301 ctgacgctca atcggcttta tggccgttcg agcggacaca agctgcgcaa agcgcagcag
      361 gagctcgtcg agggacttct accagcgctg agcatccccc tcgacggcga acttaccgct
      421 gcgcgcctgt ttggcgatga tcgaccgctg cacctcgaga tcggctttgg ctcgggcgag
      481 catctcgccg accgtgcgga catgcttccc gatcacgggt tcatcggcgc ggaaccattc
      541 ctcaacggcg ttgcggcagc actcaaccat gttcgcgaga aaaatcttgc caacgttcgc
      601 ttgtggcgcg gcgatgctct ggacgtgctc cgacgacttc ccgacgagag cctgagcttc
      661 ctctatctcc tgcatccgga tccctggcca aaggcgcggc acgccaagcg gcgaatggtc
      721 aacgatgggc cggtcgagct tttcgcagcc aagctgaagc cgggcggcga attccggctc
      781 gcaacggacg atccgaccta tctcacctgg tcattgatga tcatgcagcg ccacgcgggc
      841 gagttcgact ggcttgccga acatccgcgc gacttcctcg aaccttcggg cggctggatc
      901 gagacgcgct acggcgccaa gtctcgccgc gaggggcgcc ggccttatta tctgcgctat
      961 cggcgtgtcg cggcgggcga cagccggacg agccgggcgt catcgccgtc ttccagcaaa
     1021 tagattgcac catctggccc ctcgccgacc catcggatcc ttttcccgag cctccaccga
     1081 tccgccttct gcgcgttgtt gccgctgaag gtcacgcgga tgagagactc gcccgacagg
     1141 cttccgatga aaccattgcc cttccactga gggaacatct tgcctgaata gatcagcagg
     1201 gtcgtcgggg agaccgacgg cacccaatag agcttggctc gctcaagatc cgggcgcgtc
     1261 gatggtttgg ggatcggaac gccgttgtaa ttttcgccct ccgagacgag tggccaaccg
     1321 tagttgtgtc cggggagaat gaggttgagt tcatcgccgc ccctcggacc catctcggtc
     1381 tcccaaaggc ggccttccgc atcaaacgtc agaccatagg ggttacggtg accagtgctc
     1441 cacgtctccg ccggtgtaag attgggtccg ggccacgtga accttcgtcc gactgcgctt
     1501 cttgccgccc gcgtgtcgct cggcggatcc gtaatcatca ccgtcggtga cccggttcgg
     1561 cccgccagtg ggtttcccgg tgcgggcttg ccctccaacg tcaggtgaag gatctttcca
     1621 agcggctggt tagggtcctg cgctggagtg aagcgctggc gctcgcctga actgaggaac
     1681 aacgacttgc cgtctggtgc aaaggcgatg atggcgccga attggccacc ctcgccgccg
     1741 gccggatcat gccagagcaa gtgaaagtcg tcgaggcgcg ctccgctctc gctcgcgctg
     1801 agccgtgcac gggcaagagc aaggccactc ccgccgttcg ccgacggctc ggcataggta
     1861 agatagagtt ccttgtcggc ggcaaagctc ggcgaaagcg cgacatcgag cagcccgcct
     1921 tgacccgaag caacgacccg cggcgcgcca gcaaccggct gcttgcggcc agtcctcaca
     1981 tcgacaagcc agatccgtcc cggcttttcg gtaacaaccg cctcgctcga cgctggaagg
     2041 aacgccatcg cccacggatt gtcgaacgtc gcgatcggac tggttgcaaa tggaggatcc
     2101 gacgacgtgg cggcggcaat cggtgcttgt gccgaagagt tgttcatctc gccgttgggt
     2161 gtggccgctg tcccacacgc agcgactacg agacaaaggc tgtaacgtac gacacgcatc
     2221 ctcatcggtg ttgctccgtt gttcgcttgg tgaacccgcg ccacgcatct acgcacgaac
     2281 aacccatgac gatgcacgcc tcaagcctca tttcgcttgc aaccgcattg ccgccttatg
     2341 tggtcgagca gggcgaagcg aagcttcggg cgcgcgaggc gttcggtggc aagaaagccc
     2401 tcttcgatcg gcttgctccc gtgttcgata atgccggcat cgcgaggcgc cacatcgtcg
     2461 cgccaccgga ctggtacatg tccgctcacg ggtggcacga tcggaacgag gtttacctca
     2521 aggcagccga ggagctgttc atcgacgccg cgacggcagc gattgcgaag gcaggtctca
     2581 agccccagga cattgacggc attgtcgctg tctcgaccac cggcatcgca acgccgagcc
     2641 tcgatgcgcg ctgcgcaaag cgaatcggct ttcgcaatga catccggcgc gcgccgatct
     2701 tcggccttgg ctgcgccggc ggcgtcagcg gcttgtcgct ggcgtcgcgc cttgcaacgg
     2761 ccgatccggg aagcgtctgg ctgttcgtca cggtcgagac atgttcgatt tcgattcgcc
     2821 tcgacagcga tgatcctgca gcggttgttg caaccgcgct gtttggcgac ggcgcggcag
     2881 cggcggtcgt cacgagcgga aagcatagtc tcgctcatat tggcggctct gctgaaaagc
     2941 tttggcccga tacgcttcga atcatgggct gggacgttga ggatccggga ctttcggtgg
     3001 tgtttgatcg cgccattccg cccttcgtcg aagcggaact tgccgaagcg gttggcgaga
     3061 tgacggctgc cgttggaaca agcgcaagcg atatcgatcg attttgctgt catccgggag
     3121 gggtgaaggt gatcgacgca attgaaagcg ctcttgacct taaccagggt actttgaaca
     3181 tcgaacgaga ggtcctgcgc gactatggca acatgagcgc tccaacggtg atgttcgttc
     3241 tcgaccgtct tcttgcgcaa ccgctgccga acaaggtgat gatgacggca tttggtccag
     3301 gcttcacctg cgctggcctc atgctcgacg cgccgtgatc ctaaacatcc tgatcctgtc
     3361 gttggtaacg ttcgagcgga ttgccgaact gtggcttgca cggcgcaaca cacggcggct
     3421 gctatcgctt ggtgcgcgcg aatacgcacc gagacactat ccggcgatcg ttgctctcca
     3481 cgccgcctgg cttgcaagcc tttggctgtt cgccttgccg cacagcatac ggcccttgtg
     3541 gctggccttc ttcctggtga tcgaacttgg ccgcgtctgg gttcttgcaa cgcttgccga
     3601 gcggtggaca acacggatca tcgtccttcc ggaagctccc ctcgtcgggg gcggacccta
     3661 tcgcttcacg cgccatccaa attatatcgt cgtcgtcgcc gagatcctgg tcttaccgct
     3721 cgcctttggg ctctggcgca tcgccctcgt gttcactttg ctgaacgcgg tcattctcgc
     3781 gatccgcatc catgccgaag atcgtgcgct cggccgttct caaccacggt agacgtacag
     3841 gtcataatgt tcgtccgtga tcgcgggccc aagtcgcgca acgagacgcg tggatcgacg
     3901 aaatcgcccg atcgccgctt gcgacacgct cgtcgagtca cggtacatcg tgaggtgagc
     3961 gcccggctta gcggcatcga ggtccgtctg aagcaggatc acgactggtc ttcgataggt
     4021 ctggttgagc cgagcggcat caacaaggat cgtgtcgagc gagatctgct ggcgctcgct
     4081 actcgtcttg aagaacagcc ggtcgaaacg ttcctcgcgt aaaaaccaca aggggttgtc
     4141 gatgtaatag ggaagtggct cgagcatcag gtcaggatcg gcgatgacga tcgctcgctt
     4201 aagatccgga cgctcgatca atcgcgcggc attggccgac tggctgaacg gcagtccctt
     4261 tgcctggagc aaaagcggct ttccaagatc aagtgtttgc gcggcaagca ccaacagcaa
     4321 cgccgctcgg ccgatcagtg cgacgcgttg cgtccaggcc ttatcctccg atgctcgatc
     4381 gaccgattca tgttcaatcc aggcgagagc gaggagaaac accacgaaca aggcttcgtg
     4441 gcggtagccg gagggataaa cgaagaagaa gaagagcttg agccctgcaa ggcctgcaag
     4501 cgcggcaagg agggccggtg gtcgtcggac gaaggcaagg catgacgtcc atagtattat
     4561 tggtggcgca aggccgtgag cattgagaag gaggtttgaa aagcccttgg tcccatcggc
     4621 gagcgcagca gcgatgctga tgagggtgat gtggccgtag ttcagcgata ccgccccctc
     4681 gttcatcggc ggatagacga gaacgaagga gaggaatgct ccgacgagcg aaagaaatgc
     4741 atttccagcg aagatggacc agtcgcggat cgtcggtttg ccatccgtca gcatttcgaa
     4801 gaaccggaac agcaggaacg cgccggcgag gatcgtgctc ggtacgttcg tattggcaag
     4861 gacggcgagg acgaggccaa accaaagagt ccgcttcaca cgggggtaga cggccgcgag
     4921 cgcaaacatg acgagcgctg caattccgta gttgcgcgcg attaccgcat aatcgaacgc
     4981 gccgaaaaga ctgaagagga cgagcgcaac gaggaaggtg cgaaagggcg atttccatgt
     5041 gaataaggcg atcgccgcaa tccagataac gagcgccgca gcaggaagaa cctcacgcgt
     5101 cgggaaaacg tcatgaaggg ctcgaaggat aaggtaccac aagccggggt gaccttcgcc
     5161 ctggacgttg cgaagcattt ggccgacgct cgaaccggat agtgcgagcg agaaggcacg
     5221 gacctcgtcg cgccagacaa catgcttcca aaaaagccac gcgacgagca aaagccacga
     5281 caggaagagc aataagcgct tcctactgcc gtcagccgtg gtatgcgtgc tgaccagggt
     5341 tgggactgga taattcaggg gagcggtccc aagcctcgtt cggccaatcc ggtcaggagc
     5401 gcaccttgtc ccctatctct catttcgccg attgcgtgaa cctcccgatg ctcgcgagca
     5461 gcggaactag ccgatgatcg acggtctgca aatcgccgtc atcctgccgg cattcaatgc
     5521 agcaaggacg ctcgagcgca cctacaacga gatcccgcac gagatcgtcg acgacgtcat
     5581 cctcgtcgat gatgcaagca cggacgacac cgctcttatt gctggaaagc ttggcatcca
     5641 cacaatcatc cacgcgcgaa acggcggtta cggagccaat cagaagactt gctatgcgca
     5701 agctctcgca cgcggcgcgg atatcgtcgt gatgctccac ccggattatc aatattcacc
     5761 gcggctgatc acagccatgg ccgcgatgat cgcgtctggc cattatgacg cggtattcgg
     5821 ttcaaggatc ctcggcggcg gtgcgctgcg cggcgggatg cccgtctata aatatgtagc
     5881 gaaccgcctc cttaccggct tccagaacct cctgcttgga gccaagctca gcgaatatca
     5941 cacgggctac cgagcgtggc gccgcgaagt tctcgagcgg ctgccgcttg ccgcctgctc
     6001 cgatgatttc attttcgata accagatgat tgcgcaggcg ctctgggccg gtttccgggt
     6061 cggcgaaata tcgtgcccga cgaaatattt tccggaagcc tcgagcatca acttccagcg
     6121 gagctgcact tacggccttg gcgttcttca aacgtcggtc gtctttcgcc tctgccgatg
     6181 ggatcttgga aagtccgcat tgttcgccga cggcccaccg cttccggcat tgaccgcctt
     6241 gccgtcaatg acggtcactg aacccttgac gagagactcg ccttcgctgc tcacctcgtt
     6301 gacgcttgaa gggaagcaga agctgatcgg cgaagctgcc taacggcggt cttgccctgc
     6361 cctttcgacc ggcctatatc gagcctctct cctcgacatc gtccgatgcc tgaggctggg
     6421 gctccacggc tccggtccga gagatttttt gagtttttgg cgtaaaggaa agtccggcgt
     6481 gacggatgtc gcggcacttg caagacagat cgaacccgag gtgaagagcc tcggctacga
     6541 gctcgtgcgc gtcgcgatga tcggcggaac ttccgatccc accctgcagg tgatggccga
     6601 gcgaccggac acacgccagc tcgacctttc ggactgcgag acaatttcgc gccgcctgtc
     6661 ggactggctc gaccagaacg acccggtcga gggcagctat cggctggaag tgagttcgcc
     6721 tgggatcgat cggccgctta ctcggcaaag cgactattcc gactgggccg gccacgaagc
     6781 gcggatcacg cttgccgacc agcgcgacgg tcgcaagcag ttttccggaa cgcttcaggg
     6841 cattgagaat ggaaacgtta cgttggtcga caagagcggc cagtcgcaca tcctgccctt
     6901 cg
//
LOCUS       DASRBJ010000356         4309 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_455191,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000356 DASRBJ010000000
VERSION     DASRBJ010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4309
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_455191"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..843)
                     /locus_tag="VE968_09830"
     CDS             complement(<1..843)
                     /locus_tag="VE968_09830"
                     /inference="COORDINATES: protein motif:HMM:NF012363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HZU52159.1"
                     /translation="MRRFILLLLVFSIALHEPATAQQVRIDSGEVEGKSWNGTFLFRG
                     IPFAAPPVGDLRWRPPQRPASWKGVRRSAEQPSSCLQNDYGWNHSDFLIGSEDCLTLD
                     VRTPSLRGKLPVLVWIHGGSNRAGGPNDIVLSDLGKSVVLVGIRYRLGIFGFLSHPQL
                     TAEQGASGNYGLMDQRAALQWVRRNIARFGGDPANVTIAGESAGSEDVGLMLVAPSAR
                     ILFKRAIMESGTPGFGVPFRSLREAERIGEQAASLLGTRSNLASMRAAPAAVLLEVDR
                     KLHDD"
     gene            916..2208
                     /locus_tag="VE968_09835"
     CDS             916..2208
                     /locus_tag="VE968_09835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZU52160.1"
                     /translation="MRFMQQTPSRGFVGAYALVTCLFFAWGFITSLVDPLVAAVKGIF
                     HLSDVEAQLSASAFFIAYGVVSLPAATLLRRAKSVPTVLAALVMMVVGCMIMLIAANI
                     AVYEIVLLGLFVLASGITVLQVAANPLAAVLGPPERSHFRLTFSQAFNSLGTFIGPYL
                     GAFLFLKGIEVKKGTIVTAAARNHSLAGIDRAFFWIAGLILLIGLLIFAGRKLINSAS
                     PERTGGSLGIAAAMSEAASAPWALFGGLAIFLYVGAEVSIGTQMALFLNSTGVWNIAL
                     ETAGKFVSLYWGGAMVGRLIGSALLTKVPAPRLLALFTAIACALCVFVFSTGGAAAGY
                     AALAIGLFNSIMFPVIFTITLERSSASEEATSGFLCFSIVGGAAIPPLTGLVSQHTNY
                     VVAFIVPALCYAVLFVFAVSSAGAKRLLREEPQAVTIH"
     gene            2374..2622
                     /locus_tag="VE968_09840"
     CDS             2374..2622
                     /locus_tag="VE968_09840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52161.1"
                     /translation="MADPIAARRKALAKLRALEEIDDPESLVVPILIDAILMAESYRG
                     ARHEITFLGELTRSVDALIRELNAAEKAREWAEPITGE"
     gene            complement(2609..3466)
                     /gene="ligD"
                     /locus_tag="VE968_09845"
     CDS             complement(2609..3466)
                     /gene="ligD"
                     /locus_tag="VE968_09845"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HZU52162.1"
                     /translation="MAWTREPTYEKPDISVRATTLYYEIIAPIMLKFLERRLLNLFRC
                     REGKCFFQRNREHPPSGNEFDKLVHFERVDQKNGRSEDYLYICSAEEIISCAKVQSVE
                     FHGWGSSAGSVETPDRLVIDLDPDPGLDFAQVKRAALKVRNGLEAVGLECFPLLSGGK
                     GVHVVVPLEPVAQWDEVREFARTFCAALSETDPEHFTVALRKQQRRGRIFLDFLRNQR
                     TATAIMPYSARARATMPVAAPINWEELKDIGSSAAFTIADVGQLIERSASRELKSWGA
                     GQQRLPILR"
     gene            3551..>4309
                     /locus_tag="VE968_09850"
     CDS             3551..>4309
                     /locus_tag="VE968_09850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52163.1"
                     /translation="MVLVRMFALVAIALSCSLVGPAPATAAAYKNFRAAIYITVRDTK
                     RLADPATFARDFDRVSSQLKFDKVYIEAYRDRLFATDAELEAVKRAFQAKGIETSGGI
                     TLAAGGSAGQFGTFDYENAADRAECERAVRLISRHFDEVILDDFFFYTSKSDADIAAK
                     GNRSWTDYRLDKMREVSRDLVLGPAHEENPRVHVIIKYPNWYEHFHGLGYDLSVEAHM
                     FDAIYTGTETRDPIITDQLLQQYESYEIYRYFSNI"
BASE COUNT          845 a         1289 c         1249 g          926 t
ORIGIN      
        1 gtcgtcatga agcttgcgat cgacttcgag aagcactgcc gcgggcgcag cacgcatact
       61 cgcgagattg ctacgagtgc cgagtagtga tgccgcctgc tcgccgatgc gctccgcttc
      121 acgcaggctt cgaaacggca cgccaaagcc cggcgtcccg ctttccatga ttgccctctt
      181 gaacaggatg cgagccgatg gcgcgacgag catcagtccg acatcctcgg atccggcgga
      241 ttcgccagct atcgtgacat tggctggatc gccgccgaaa cgcgcgatat tgcggcgcac
      301 ccactgcagt gctgcgcgtt ggtccatgag gccgtaattg cccgaagccc cctgttcagc
      361 agtcagttgc gggtgcgaga ggaagccaaa gattccgagg cggtagcgaa tgccgacaag
      421 gacgaccgat tttccaagat cggagaggac gatgtcattg ggacctccgg cgcggttgct
      481 tccgccatga atccacacca gcacgggaag cttgccgcga agcgaaggag tcctgacgtc
      541 aagcgttagg caatcctcgc ttccgataag gaaatcggaa tggttccagc cataatcatt
      601 ctgaagacat gaagacggct gctcggcgga gcgccgcacg cccttccaac tggccggccg
      661 ctgcggcggt ctccacctaa gatccccaac tggcggagca gcgaacggaa tgccacggaa
      721 caggaaggtg ccgttccatg attttccttc aacttcgccg ctatcgatcc gcacctgctg
      781 cgctgttgcc ggctcgtgaa gcgcgatcga aaagaccagc agaagcagga tgaaacgtcg
      841 catgcgccat tgttaactcc aacaagggtt cttgtgcgac taccaaatgg ctgtcagctt
      901 cgcgcaaaac atttgatgag gtttatgcaa cagactccgt cgcgcgggtt cgtaggcgcc
      961 tacgctctcg tcacctgctt gttcttcgcc tggggcttca tcacgtcgct cgtcgatccg
     1021 ctcgttgccg ctgtcaaagg cattttccat ctctctgatg tcgaggcaca gctcagcgcc
     1081 tcggccttct ttatcgctta tggggttgtg agccttccgg ccgcgacgtt gttgcggcgc
     1141 gcgaaatcgg tgccgactgt cctagcggct ctcgtcatga tggtggttgg ttgcatgatc
     1201 atgctgatcg ccgccaacat agcggtgtac gagatcgtcc tcctcggatt gttcgtgctc
     1261 gcaagcggaa tcacggtcct tcaggttgct gccaatccgc tggcggcggt cctcgggcca
     1321 ccggaacgga gccatttccg gctgacgttc agtcaagcgt tcaacagcct cggcacgttt
     1381 attggaccct atcttggcgc gttcctcttc ctcaagggaa ttgaggtcaa aaaaggaaca
     1441 atcgttactg cagcggcacg caatcactca ctcgccggta tcgatcgagc gttcttctgg
     1501 atcgcggggc tcatcctcct cattgggctt ctgatctttg ccgggcgaaa gctcatcaac
     1561 tcggcatcgc ccgaacggac ggggggttcg ctcggcatag cagcggccat gagcgaggcg
     1621 gcgtccgcgc cctgggcgct tttcggcggg cttgccatct ttctctatgt cggcgcagag
     1681 gtctcgatcg ggacgcagat ggcgctgttt ctcaacagca ccggcgtgtg gaacatcgct
     1741 cttgagaccg ccggcaaatt cgtaagcctc tactggggcg gcgcaatggt cgggcggttg
     1801 atcggttcgg cactgttgac caaggtgccg gcgccgcggc tccttgcact gttcacggca
     1861 attgcttgtg ctttgtgcgt cttcgtattt tcaacaggcg gcgcggcggc gggttatgcg
     1921 gccctcgcga ttggcctatt caactcgatc atgttcccag tgatcttcac gatcacgctc
     1981 gagcgctctt ccgcatcgga agaagcaacg tcgggtttcc tgtgtttttc catcgtgggc
     2041 ggcgccgcaa tcccgccgct cactggcctt gtctcgcagc acacaaacta cgtcgtggcc
     2101 ttcatcgtcc ccgcactttg ctatgccgtg cttttcgtct tcgccgtttc gtccgccggc
     2161 gcgaagaggc tgctccgcga ggagccgcag gcggtgacta tccactaggc gcaatgtttc
     2221 ccggcgctcg atgggggacg acggcgcccc aagctgcgcc agtccgcgct gctgctacgg
     2281 caggttgaac ttctcgcggc gccggcgccg agtatccttc atccatcgtg aaggagagta
     2341 gtcatgggtt ggtgtattgg ccgtagcgaa gcaatggctg accccatcgc ggcgcgtcgc
     2401 aaggcactag cgaagctgcg agctctcgag gagatcgacg atccggaaag cctcgtcgtt
     2461 ccaattctca tcgatgcaat cctgatggct gagagctacc gcggagcaag acacgagatc
     2521 accttcctcg gagagctaac gcgaagtgtc gacgcgctga tccgagaatt gaatgctgcc
     2581 gaaaaagcgc gtgaatgggc tgagccgatc accggagaat aggaagtcgc tgttggccag
     2641 caccccagga tttgagttct cggctcgctg agcgctcaat cagctgtcca acgtcagcga
     2701 tagtaaacgc cgccgagctg ccaatgtctt tcagctcttc ccagttgatt ggagcggcaa
     2761 ccggcatggt tgcccttgcg cgcgccgaat aaggcatgat cgccgtggcg gttcgttggt
     2821 tgcgcaggaa atcgaggaag atccgtccac gtcgctgctg ttttcgaagc gcgacggtga
     2881 aatgttccgg atcagtttcg gacagtgcgg cgcaaaaggt tctggcgaac tcgcgcacct
     2941 cgtcccactg cgcaacgggc tcaaggggga cgacgacatg gacgcctttc ccgcctgaca
     3001 gcagcgggaa gcattcaagc ccgaccgcct ccaggccatt gcggaccttg agcgcggcac
     3061 gcttcacttg ggcaaagtcg aggcccggat cagggtcgag gtcgatgacc aaccggtcgg
     3121 gcgtctcgac ggatcccgca ctacttcccc agccatgaaa ttcgactgac tgcaccttgg
     3181 cgcacgaaat gatctcctct gccgagcaga tatataaata gtcctcgctt cgaccgtttt
     3241 tttgatcgac gcgttcgaag tgcacgagct tgtcaaactc gtttccgctc ggaggatgtt
     3301 ctcgattgcg ctgaaagaag catttgccct cgcgacagcg aaagaggttc agcagccgcc
     3361 gctcgagaaa cttgagcatg atgggcgcga tgatttcata atagagcgtc gttgcacgga
     3421 cgctgatgtc cggcttttcg tacgtcggtt cacgcgtcca tgccatatcc ttgcaaacgc
     3481 acctcgccag ccgcttgctc ctgttcgtcc gccgactatt ggtaacgcta acaggaaaag
     3541 gggaccgccg atggtgctgg tacgcatgtt cgcgcttgtc gcaatcgcct tgtcatgcag
     3601 cctggttgga ccggctccgg cgactgccgc tgcctacaag aattttcgcg cggcaatcta
     3661 cattactgtt cgcgacacga agcgacttgc cgatcccgcg acattcgcgc gcgatttcga
     3721 ccgcgtatcg tcgcagctca aattcgacaa ggtgtacatt gaagcatacc gcgaccgcct
     3781 gttcgcgacc gatgcggaac tcgaagcggt gaagcgcgca ttccaggcga agggcattga
     3841 gacgtccgga ggtattacac tcgcggcggg cggctctgcg gggcagttcg gtaccttcga
     3901 ctatgagaat gctgcggacc gcgcggaatg cgaacgcgca gtgcggctga tatcgcggca
     3961 ctttgacgaa gtgatcctgg atgacttctt cttctacact tccaagtccg acgctgacat
     4021 tgctgccaag ggtaatcgca gctggacgga ttaccggctc gacaaaatgc gcgaagtaag
     4081 ccgcgacctc gtgcttggcc cagcacacga ggagaatcca cgcgttcacg tcatcatcaa
     4141 atatccaaac tggtacgaac atttccacgg gctggggtac gatctttccg tcgaagctca
     4201 catgttcgac gccatttaca ccggcactga gactcgcgac cctatcatca ccgaccaatt
     4261 gctgcagcaa tatgaaagct atgaaatcta ccgctatttc tcgaacatc
//
LOCUS       DASRBJ010000357         2969 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_653611,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000357 DASRBJ010000000
VERSION     DASRBJ010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2969)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2969)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2969
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_653611"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..337)
                     /locus_tag="VE968_09855"
     CDS             complement(<1..337)
                     /locus_tag="VE968_09855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52164.1"
                     /translation="MAKSARKDSTGSTSSSGNETVDKLARAAMSKEMLAAGLAAAAAA
                     ISASPKARRAIRDAGLDAADTATQAASNVMASATKLGSLIAEAVAEAAQRVMSGKWTS
                     DESSGGSSTS"
     gene            complement(670..1125)
                     /locus_tag="VE968_09860"
     CDS             complement(670..1125)
                     /locus_tag="VE968_09860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52165.1"
                     /translation="MHLRHAAASALLFSSSLLAQRGLDFSTATPIAGTWNYSSTSDGT
                     EARFIDSTSNPQLIIHCTRETRIVAISRPAVAASPALDIWTSSEQRSIPSIFNAATGR
                     LTIALSAGDPILDAMSNSRGRIAVVAGTQPALVLPPWPELARVIEDCRA"
     gene            complement(1132..1650)
                     /gene="phaR"
                     /locus_tag="VE968_09865"
     CDS             complement(1132..1650)
                     /gene="phaR"
                     /locus_tag="VE968_09865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate synthesis repressor PhaR"
                     /protein_id="HZU52166.1"
                     /translation="MSKASGKVTIKKYANRRLYDTESSTYITLDRLAQMVREGREFEV
                     VDAKSGEDITRQVLTQIIVEEEARGSTMLPLNFLKQLIGLYGNSMQNFVPQYLEAAMD
                     AFQRNQTAVQDALGGNVFADLAKRNMAMFEDASRAFTGKAKAQAAPTNSDVEQLKAEL
                     AALQAKVDRLSR"
     gene            1649..2725
                     /locus_tag="VE968_09870"
     CDS             1649..2725
                     /locus_tag="VE968_09870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HZU52167.1"
                     /translation="MNSSPNRKRDLLLEYSALQHERAPRPLPLFLELVRQVSTRDPRL
                     ASEALAGLRAYERAPRHERRPQPPEVARVRGAALRDYGGSGPPALLVPSLINPPRILD
                     LDDEVSLTRAIAQMGRRTYLLDWGKASERAQLSVAEHVNELLLPLIKEIGSPVALVGY
                     CLGGTMAVAAANLVEVECLITLASPWRFANYPKRSHDALRDMWRQSQSAARQLGALPM
                     EVLQAAFWSLDPDRTVSKFAEFSELDPSSAASRRFVELEQWANEGEPLPYPAAQELVE
                     ELFGKDRPGTGTWMVGSRRVADYLSVPTLHLTAARDLIVPPQTAAAGHIEAIDAGHVG
                     MIVGSARHRLHEALQAFLNPGCRC"
     gene            2750..2826
                     /locus_tag="VE968_09875"
     tRNA            2750..2826
                     /locus_tag="VE968_09875"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2784..2786,aa:Arg,seq:ccg)
BASE COUNT          573 a          888 c          856 g          652 t
ORIGIN      
        1 aggacgtcga gctaccgcca gaactttcat cacttgtcca tttgccggac attactcgtt
       61 gcgctgcctc ggcaacggct tccgcaatca aagatccaag cttcgtcgcg ctcgccatga
      121 cgttgcttgc cgcctgcgta gcggtatcgg cggcgtcgag acccgcgtct cttattgcgc
      181 gtcgcgcttt gggacttgca ctgatcgcgg cggcggccgc ggctagccct gcagcaagca
      241 tttccttgct cattgcagct cttgcgagct tgtcgaccgt ttcgttgcca ctgctcgatg
      301 tcgaaccagt tgaatcttta cgtgcggatt tggccattgc ttcatctcct cccgtcttgg
      361 cggaaaagac acttcaaggc cgtaacggtt cccgaatgat atttcgagta tcatttagct
      421 gacatgttaa agggcaccgc tgcggttctg cagcgatgcc cttcgacatg gtcagcggcc
      481 agaggtgtgg ccgttcgtca gcactcaggg tctgcgaaca cccctctccg acctccctgc
      541 tgaaccatga gacatcggat cacctccttt cgctgcgttg aagccaggag tgaagatgtc
      601 ataagcagcg gcaagcgcaa gacttgtaat catttaaaca ttaagcaatc atcgtcgctt
      661 cgcgctcgct caagcgcggc agtcttcaat cacccgcgca agttctggcc aaggcggcag
      721 cacaagtgct ggctgcgttc cagcaaccac ggcaatgcgc ccccggctgt tcgacatcgc
      781 gtcgagaatg gggtcgccgg ccgacagcgc gatcgtcaga cgcccagttg ccgcattgaa
      841 tatcgaaggg atgcttctct gctccgaact cgtccagata tcgagggcgg gtgaagcggc
      901 aactgccggt ctcgatattg cgacaatgcg cgtctcgcgt gtgcagtgaa tgatcagctg
      961 cggattggac gtcgagtcga tgaaacgggc ctccgtaccg tcgcttgtcg aactatagtt
     1021 ccaggttccg gctatcggag tcgcggtgct gaagtcgaga ccgcgctgcg cgagaagcga
     1081 cgacgagaaa agcagcgcgg acgctgcggc gtggcgtagg tgcatttttc gtcagcggct
     1141 taggcgatcg acctttgcct ggagcgccgc gagctccgcc ttcaattgct caacgtcgct
     1201 gttagttgga gcagcctgcg ctttcgcctt acctgtaaaa gcgcgacttg cgtcctcgaa
     1261 catcgccatg ttgcgctttg caagatcggc gaaaacattc ccgccaagcg catcctggac
     1321 agcagtctgg ttgcgttgaa aggcatccat cgccgcttcc aaatattgcg gcacgaaatt
     1381 ttgcattgaa tttccgtaga ggccgatcag ctgcttaagg aaattcagtg gaagcatggt
     1441 gcttccgcgt gcctcttcct cgacgattat ctgcgtcagc acctggcgtg tgatgtcttc
     1501 cccgctcttc gcgtcgacca cttcgaactc gcggccttcg cgaaccattt gcgcaagcct
     1561 gtcgagcgtg atgtaagtcg agctttcggt gtcatagagc cgccggttcg cgtacttctt
     1621 gattgtcact ttgcccgatg ccttggacat gaacagctcc ccaaaccgga agcgcgactt
     1681 actactcgaa tatagtgcgc tgcaacatga acgcgcgccg cggccgcttc cgctctttct
     1741 cgaactggta cggcaagtct caacacggga cccaagactt gcgtccgagg cgctcgccgg
     1801 tctgcgtgcg tacgaacgtg caccacggca tgagcgccga cctcagccgc cggaagtcgc
     1861 gcgcgttcgc ggtgctgcat tgcgcgacta tggggggagt ggtccaccgg cactcctcgt
     1921 cccgtcgctc attaatcctc cgcggatact cgatctcgat gatgaggtct cgctgacgcg
     1981 cgcgatcgct caaatgggtc gacgaacata tttactcgat tggggaaaag cgagcgagcg
     2041 tgcgcagcta tccgttgcgg aacacgtcaa cgaattgctc ctgccgctga tcaaggagat
     2101 cgggtctcct gtcgctttag ttggctactg cctaggaggc acgatggccg ttgcggcagc
     2161 aaatcttgtc gaggtcgaat gtctcattac gctcgcctcg ccttggagat tcgcgaacta
     2221 tccaaagcga tcacatgatg cgctccggga catgtggcgc cagtcgcaga gcgccgctcg
     2281 acagctcggt gcacttccga tggaagtcct gcaggcagcg ttctggtcac tcgatcccga
     2341 tcgaaccgtc agcaagttcg cagagttttc agagctcgac ccctcgagcg ctgcgtcgcg
     2401 tcgctttgtc gaactcgagc aatgggcgaa cgaaggcgaa cctttgcctt acccggctgc
     2461 gcaagagctt gttgaggagc tcttcggcaa ggatcggcca ggaacgggca catggatggt
     2521 tggatctcga agagtcgcag attatctatc tgtccccacg cttcatctga cagcggcgag
     2581 agatctgatt gtgccaccac aaacggcagc cgcagggcac attgaagcca ttgatgcagg
     2641 ccacgtggga atgattgtcg gctcagcgcg ccatcgtctg catgaagcac tgcaagcgtt
     2701 tctcaacccg ggttgccggt gctgatcact gaggctaagc ccagctcaag cacccgtagc
     2761 tcagctggat agagcgttgc cctccgaagg caaaggccac aggttcgaat cctgtcgggt
     2821 gcgccagtcc tctaccccga gagaaatgcc gcgagtgcct cgtgcagccg cttgcgcgcg
     2881 gagccgacga tcattcccac atggccggaa gcgatggcga tcttctgtcc cgacggcgcg
     2941 gttgctgcgg gagcgatgcg gtcgtgctc
//
LOCUS       DASRBJ010000358         2534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_299699,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000358 DASRBJ010000000
VERSION     DASRBJ010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2534
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299699"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..303
                     /locus_tag="VE968_09880"
     CDS             <1..303
                     /locus_tag="VE968_09880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HZU52168.1"
                     /translation="DGKPGGWTHREFGKALASAVGTRAAVISSPSLVLRIAAHADHLL
                     RGERAKLTADRAAYFSHRNWVVEPKRSAPACLWQPQIATIDGLKSTASWYREKNWL"
     gene            401..643
                     /locus_tag="VE968_09885"
     CDS             401..643
                     /locus_tag="VE968_09885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000036 - acyl carrier activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HZU52169.1"
                     /translation="MSDRQQKLTKVLKLIEPFNRKGIEVSEATRFAQDLEWDSLTVLD
                     FVANIEDEFDVIISMNMQAEIETVGQLVDALQKLKA"
     gene            640..1842
                     /locus_tag="VE968_09890"
     CDS             640..1842
                     /locus_tag="VE968_09890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011446750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HZU52170.1"
                     /translation="MNDLFSKFDPLIEQRETLLKTGVTDPFNLVMEKVESPTVAICNG
                     RRTILLGTYNYMGMTFDPDVIAAGKKALEEFGSGTTGSRVLNGTYGGHKTVETALKDF
                     YAMDHAMVFSTGYQANLGIISTIAGKDDYIILDIDSHASIYDGCAMGNAQIVPFRHND
                     IEALEKRLKRVPEGAGKLVVLEGVYSMLGDIAPLREMVSVSKANGAMVLVDEAHSMGF
                     IGEHGRGVAEAQGVIDEVDFIIGTFSKSVGTVGGFCVSNHPKFEILRLVCRPYVFTAS
                     LPPSVVATAATSIRKLMDSADKRRHLWENSKRLHSGLRQLGFKLGTDEPQSAIIAVIM
                     PDLEKGAAMWEALLNEGLYVNLARPPATPAGMTLLRCSLCALHTEDQVGEILGMFAAA
                     GRATGCIS"
     gene            1901..>2534
                     /locus_tag="VE968_09895"
     CDS             1901..>2534
                     /locus_tag="VE968_09895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52171.1"
                     /translation="MMDDGEDVRFDWRRGGAAALGLLAALILMAMVFAVKLANDAREQ
                     ALSAERHSYEVALIVRNVSANISKAEAALARFVLDENPKTSGNIYASDWQLAGYQIDQ
                     LKDLERNSPAQLRRVAELERLFDKRDQELSLAAHAALARQGDTGIRYFYQASHGANNQ
                     PSTGDLLEKKLDEIIRAERASRAGQIEQSDYSSAQADNLTSYLSWLGIIVG"
BASE COUNT          530 a          782 c          734 g          488 t
ORIGIN      
        1 gacgggaagc ccggcggatg gacgcaccgc gaatttggaa aggcgctcgc ctcagcggtc
       61 gggaccaggg ccgcggtcat ttcctcgccg agcctcgttc ttcggatcgc ggcgcatgcc
      121 gaccacttgc ttcgcggcga acgtgccaag cttactgccg atcgcgccgc ttatttttcg
      181 caccggaact gggtcgtcga gcccaagcgc tcggcgcctg cttgtctctg gcaaccgcaa
      241 atcgcaacga tcgacggtct caagagcact gcttcctggt atcgcgaaaa gaactggctt
      301 taagcttcga gaacgcacgt gcgcagaagc gccacgcatt tgccgcactg atgacttctt
      361 cgcgttgcga aacgggggcg cgacctttaa cgagcgcgca atgtccgacc gccagcaaaa
      421 actcaccaaa gttctcaaac tcatcgaacc cttcaaccgg aagggaatcg aagtcagcga
      481 agcgacccgc ttcgcgcagg acctcgagtg ggacagcctt accgtgctcg acttcgttgc
      541 taacatcgaa gacgagtttg acgtcatcat ctcgatgaac atgcaggcgg agatcgagac
      601 tgttgggcag ctcgtcgatg cgcttcagaa gcttaaggcg tgaacgacct cttttccaag
      661 tttgacccgc tcatcgagca gcgcgagacg ctgctcaaga ccggagtcac cgacccgttc
      721 aatctcgtca tggagaaggt cgagagcccg accgtcgcga tctgcaatgg tcgacgcacg
      781 atccttcttg gcacctacaa ttacatgggg atgaccttcg atcccgacgt catcgccgcg
      841 ggcaagaaag cgctcgagga gttcggctcg ggaaccaccg gcagccgcgt cctcaacggc
      901 acctacggcg ggcacaagac cgtcgagacg gcgctcaagg acttctatgc gatggaccat
      961 gccatggtct tctcgaccgg ctaccaggca aatctcggca tcatctcgac gattgcgggc
     1021 aaggacgatt acatcatcct cgacatcgac agccatgcgt cgatttacga tggttgcgcg
     1081 atgggcaatg cccagatcgt tcccttccgc cacaatgaca tcgaggctct cgaaaagcgg
     1141 ttgaagcgcg tgcccgaagg cgctggaaaa ctcgtcgtcc tcgagggcgt ctattcgatg
     1201 ctcggcgaca ttgcgccgct aagagagatg gtcagcgtct ccaaggcgaa cggcgcaatg
     1261 gtcctcgtcg acgaagccca ttcgatgggg ttcatcggtg aacatggccg aggggtcgcc
     1321 gaggcgcagg gcgtcatcga cgaggtcgat ttcatcatcg gcaccttctc aaagtcggtt
     1381 ggcaccgttg gcggcttttg cgtttccaat cacccgaagt tcgagattct gcgcctcgtc
     1441 tgccgacctt atgtctttac ggcgtctctc ccgccgtcag tggttgcaac cgcggcaaca
     1501 tcgatccgta agctcatgga cagcgccgac aagcgcaggc atctgtggga gaacagtaag
     1561 aggcttcatt cgggacttcg ccagcttggg ttcaagctcg gcaccgacga gccgcaatcg
     1621 gcaatcatag ccgtcatcat gcccgacctc gagaagggag cggcgatgtg ggaggcgctt
     1681 ctcaacgaag gcctttacgt gaaccttgca cggccgcccg caacacccgc cggaatgacc
     1741 ctccttcgct gttcgctgtg cgcgcttcac acggaagacc aggtcggcga aatcctcggc
     1801 atgttcgctg cggcaggccg tgccacaggc tgcataagct gaacaatttc catggaacct
     1861 ttgccttcca cccaaaggtt aacgtgacta cattgggaac atgatggacg atggggagga
     1921 cgtccggttc gactggaggc gcggcggtgc tgcggccttg ggtctccttg cggccctcat
     1981 cctcatggcc atggtgttcg cggtcaagct cgcgaacgac gcgcgcgagc aagcgctgag
     2041 cgcggaacgt cactcctacg aagttgcgct catcgtccga aacgtgagcg ccaacatttc
     2101 caaggcggaa gccgcgcttg cccgtttcgt tctcgacgag aacccaaaga cgagcggcaa
     2161 tatctatgcg tcggactggc agcttgccgg ctaccagatt gaccagctca aggaccttga
     2221 acgaaacagc cccgcgcagc ttcgccgcgt cgccgagctc gagcggttgt tcgacaagcg
     2281 cgaccaggaa ctctcgcttg ctgcgcacgc cgctcttgca cggcagggcg acaccggtat
     2341 ccgctatttc taccaggcat cgcacggcgc gaataaccag ccgagcaccg gcgatcttct
     2401 tgaaaagaag ctcgacgaga tcattcgcgc ggaacgagcg tcgcgcgctg ggcagatcga
     2461 gcagagtgat tattcttccg cccaggccga caatctcacc agttacttaa gctggctcgg
     2521 cattatcgtt ggcc
//
LOCUS       DASRBJ010000359         4080 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_299795,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000359 DASRBJ010000000
VERSION     DASRBJ010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 4080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4080
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299795"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..914)
                     /locus_tag="VE968_09900"
     CDS             complement(<1..914)
                     /locus_tag="VE968_09900"
                     /inference="COORDINATES: protein motif:HMM:NF024915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZU52172.1"
                     /translation="MKSRLTTALASGALLALAPSLALAEQRPAPTPEQRIDRLEKQVQ
                     QMQRQVFPKGRPADTAGFSDDPAATQSSVVSLDQRLDALEKQMADLVRQSEENGNRLR
                     GVEAGMTQMKNDEDQRIASLEQKIAQVQAAPPPVETVDASPPVPPGVGKTRTVPVGKP
                     PVRSSSEMPTTGGVVEAVAAEDPGEDAYTQGFHEWEAGQYDQAISTLRAFTAAYPKHK
                     RVSYANNLIGRALLDKGDARAAATALLANYRSNPGGERAPDSLYYLGQALMKLGQPGQ
                     ACKAYSEMDAVYGAKIRPDLKKLELQGK"
     gene            complement(1012..1905)
                     /locus_tag="VE968_09905"
     CDS             complement(1012..1905)
                     /locus_tag="VE968_09905"
                     /inference="COORDINATES: protein motif:HMM:NF024855.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RodZ domain-containing protein"
                     /protein_id="HZU52173.1"
                     /translation="MAKREPDPEPLPEEQIEPELAPVGERLRAAREQKGLSLEDVAAQ
                     TRIPRRHLESIENAEWDSLPAPTYTIGFAKSYASAVGLDRAEIGDQLREEMGGQRFAS
                     TSADVFEPADPRRTMPKGLVIGAIIAVVLLVVVMSWLNKRSLETPESGSGSGAAQIAA
                     PVVAAPAAPITRVAPAKPATPQGPVVLTATDAVWLQVSQKGGPTLYSGTLQPNQSYTV
                     PATATAPVLKTGKPEALKITVGNETAPAVGPAATTVSNVSLLPADLMKVPAAAGTATF
                     KPSSGPVPATQPGTAPANVAQ"
     gene            complement(1948..>4080)
                     /gene="ptsP"
                     /locus_tag="VE968_09910"
     CDS             complement(1948..>4080)
                     /gene="ptsP"
                     /locus_tag="VE968_09910"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008965 - phosphoenolpyruvate-protein
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HZU52174.1"
                     /translation="SIYLLRSNNLELFATHGLRKEAVHVTRLRMGEGLVGTIAAEGRV
                     LNLAEAAEHPAFAYKPETGEERFHSFAGVPIVRLESPIGVLAVQHAEPRRYEDVEIEA
                     LQTVAMVLSEMIAGARLVDGARRSRLRSAGPLRLPGLKLVAGMARGIAVFHEPRVIVE
                     HTVAEDIEAERDRVYAAFRKMREQIDNMARETEFGIAGEHQEILETYRMFAYDEGWSR
                     RINAAIDSGLTAEAAIERVQQRTRARMREIDDPLLQERMHDLEDLSNRLLRIVSGRMG
                     TAAQTGLTHDAVLIARTLGPAELLEYDRRRLKAVLLEEGSLTSHMTIVARAIGVPVIG
                     RLHDIRHSVEEGETILVDGDNGSVIIRPTRQLLANFDHRMALSQKRRAEFAAVRNLPA
                     TTRDGVTCSVMVNAGLAEDAATLSMTGGEGIGLFRTEFQFLVSATLPGRDRQLRLYTK
                     VLDAVGNRPVVFRTVDIGGDKALPYLTDDAEEQAENPSMGWRALRLSLDRSTLMKAQA
                     RALIEASAGRVLRVMFPMVSEPWEYEEARGLFEEQVEWARKSHRKLPKRIEFGAMLEV
                     PSLAEMLDQLLPRVDFISIGTNDLTQFLFAADRSDPRLAQRYDWLSPAILRFLKRIID
                     ACDAAGVTVRVCGEMAGRPLEAMALIGLGATKVSITPAAVGPVKAMIRSLDASAIRTR
                     MDQLLAKPPRDLRKALTDWARRHAVVIG"
BASE COUNT          751 a         1265 c         1224 g          840 t
ORIGIN      
        1 tctttacctt ggagctcgag cttcttgaga tccgggcgga tcttcgcacc gtagaccgca
       61 tccatttcgg aatatgcctt gcacgcctgg cccggttgcc caagcttcat tagtgcctgc
      121 ccaagatagt aaagactgtc cggcgcgcgc tctccgccag gattacttcg gtaattggcg
      181 agcaatgcgg tcgcagctgc acgcgcgtcc cccttgtcaa ggagcgcgcg cccgatgaga
      241 ttgttggcgt agcttacccg cttatgcttc ggataggcgg ccgtgaacgc tcgaagagtg
      301 ctgatcgcct ggtcatattg tcctgcttcc cactcgtgaa atccttgagt gtaggcatcc
      361 tcgcccgggt cctcggccgc aaccgcttcg acaacgccac ccgtcgtcgg catctcggag
      421 gaacttctca ccggcggctt gccgacggga acggttctcg ttttgccgac ccctggtggc
      481 accggcgggc tcgcatcgac cgtttctacc ggaggcggcg cagcctgcac ttgcgcaatc
      541 ttctgctcga ggctcgcgat ccgctggtcc tcatcattct tcatctgggt cattccggct
      601 tcgaccccgc ggagccggtt gccattctct tcggactgcc ggaccaagtc cgccatctgc
      661 ttttcgaggg catccaaccg ctggtcgagc gagacaaccg aagattgcgt tgctgccgga
      721 tcatcggaaa agccggcagt gtcggcgggg cggcccttcg ggaaaacctg ccgttgcatc
      781 tgctggacct gcttctcaag ccggtcaatt cgctgctcgg gcgtgggagc tggtctttgc
      841 tcggcaagtg caagcgacgg agcgagcgcc aacaaggcgc cgctcgcaag agcggtagtc
      901 aggcgagatt tcacgaacat ttccccacgc ttagcgatga ctcatcaata tggcgttgcg
      961 gcttgcgcgt cgatgaaccc ggttcagcct agatgaaccg aggaagccgg ttcactgcgc
     1021 gacatttgcg ggcgcagtgc cgggctgtgt cgctggaacc gggcccgaac ttggcttgaa
     1081 agtcgccgtg ccagctgctg cgggaacctt cattaggtca gccggcaaca agctgacatt
     1141 cgagaccgtg gtcgccgccg gcccgaccgc gggcgcagtt tcgtttccga ccgtgatctt
     1201 gagggcctcg ggtttgcctg tcttgagtac aggcgccgtg gccgttgcgg gaaccgtgta
     1261 gctctggttt ggctggagcg tacccgaata aagtgtcgga ccgccttttt ggctgacctg
     1321 aagccagact gcgtcggttg cggtaaggac gacgggacct tgaggggtcg ctggtttcgc
     1381 gggtgccacg cgcgtgatcg gtgctgcggg tgcggctaca accggagctg caatttgtgc
     1441 cgccccgctg ccgctgcccg attcgggcgt ctcgagcgat cgcttgttaa gccagctcat
     1501 gacgacgacg agcaggacga cggcgatgat ggcgccgatg acgagcccct tgggcattgt
     1561 ccggcgagga tccgctggct cgaacacgtc ggcagaagtg gatgcgaaac gctggccacc
     1621 catctcctca cggagctgat cgccgatttc tgcacgatca aggccaactg cggacgcata
     1681 gcttttggca aagccaatcg tgtaagtcgg cgctggaaga ctgtcccatt cggcattctc
     1741 gatgctctcg aggtgccggc gcggaattcg cgtctgcgcc gcgacatcct cgagactaag
     1801 acctttttgt tcccgtgcgg cacgaagtcg ttcgccgacc ggcgcgagct ccggctcgat
     1861 ttgctcttcg ggcaacggtt ccggatctgg ttcgcgcttc gccatttccc ctgtttgggc
     1921 gatgcagcac cgctgtcaac cgagaagcta gccgatgacg accgcgtgtc gccgcgccca
     1981 atcggtcagc gccttgcgta aatctctcgg cggcttggcc aagagttgat ccattcgtgt
     2041 gcgtattgcc gaagcatcga gagaacggat catagccttg accggtccaa cggcagcagg
     2101 cgtgatcgaa acctttgtcg ctccaaggcc gatgagcgcc attgcttcaa gtggccggcc
     2161 agccatttct ccgcaaacgc ggaccgtcac gccggcggcg tcacaagcat caatgatccg
     2221 cttgagaaac cggaggatcg ccggactaag ccagtcataa cgctgcgcaa gccgaggatc
     2281 cgaacgatcg gcagcgaaca ggaactgcgt aagatcgttc gttccgatcg aaatgaaatc
     2341 gactcgcgga aggagttgat cgagcatttc ggcaaggctt ggcacctcga gcatcgcgcc
     2401 gaactcaatt cgtttaggaa gcttgcggtg gctcttgcgc gcccactcca cctgttcttc
     2461 gaacaaccca cgcgcttcct catattccca tggctcggac accattggga acatgacgcg
     2521 cagcactcgg ccagccgacg cttcaatcaa cgctcgagcc tgtgctttca tgagcgtcga
     2581 tcgatcgagc gaaaggcgca gcgcacgcca acccatggac gggttctcgg cctgttcctc
     2641 cgcatcatcg gtgagatagg gaagtgcttt atcgccgccg atgtcgaccg ttcggaacac
     2701 gaccggccgg ttgccgacag catcaagaac cttcgtatag aggcgcaact gccgatcgcg
     2761 gcccggaaga gttgctgaga cgaggaactg gaactccgtt cgaaagagac cgattccctc
     2821 tcctccggtc atcgagagcg tagcggcgtc ctccgcgagc cctgcattca ccatgacgct
     2881 gcaggtcacg ccatcacgtg ttgtcgctgg aaggttacgc acggcggcaa attcggcacg
     2941 ccgcttttgg ctaagcgcca tgcgatgatc gaaattggcg agaagctggc gcgtcggccg
     3001 gatgatgaca ctgccattgt cgccatcgac gagaattgtt tccccctctt cgacactatg
     3061 ccgaatgtca tggaggcggc cgatcacggg cactccgatg gcccgtgcaa caatagtcat
     3121 gtgcgacgtc agcgagcctt cctcaagcag cactgccttg agtcgccgtc gatcatattc
     3181 gagcagctct gcgggaccga gtgtccgcgc gatgagcacc gcgtcatgcg taaggccggt
     3241 ctgcgctgcc gttcccattc gcccggagac gatccgcagc agccggtttg ataggtcctc
     3301 gaggtcgtgc atgcgctcct ggagaagggg atcatcgatc tcgcgcatcc ttgcccgagt
     3361 acgctgctgc acacgttcaa tggccgcttc ggcagtgagg ccgctgtcaa tcgccgcgtt
     3421 tattcgacgc gaccaaccct cgtcgtaagc gaacatgcgg tacgtttcga ggatctcctg
     3481 atgctcgcca gcgatgccga actcagtttc acgcgccatg ttgtcgatct gttcgcgcat
     3541 ctttcgaaag gcggcataga cccggtcccg ttcggcttcg atatcttcag cgaccgtgtg
     3601 ctcgacaatg actcgcggct cgtggaagac cgcaattccc cgtgccatgc cggcaacgag
     3661 cttgagccct ggcagtcgga gcgggccagc gctccgaagc cgacttcgtc gcgctccatc
     3721 gacgaggcgc gctccagcaa tcatttcgga caacaccatc gcgaccgtct gaagtgcctc
     3781 gatttcgacg tcctcgtagc gccggggctc ggcatgctgg acggcaagca cgccgatcgg
     3841 actttcgagc cgaacgatcg gaacgccggc aaagctgtgg aagcgctcct cgccagtctc
     3901 gggcttgtag gcgaaggcag gatgttccgc cgcttcggcg aggttgagca ctcggccttc
     3961 ggcagcaatc gtgccaacga ggccttcacc cattctaagg cgtgtcacat gcacggcttc
     4021 cttgcgaagg ccgtgcgttg caaagagctc cagattgtta ctgcgcagca aatagatgga
//
LOCUS       DASRBJ010000360         3908 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_43757,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000360 DASRBJ010000000
VERSION     DASRBJ010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3908
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43757"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..412)
                     /locus_tag="VE968_09915"
     CDS             complement(<1..412)
                     /locus_tag="VE968_09915"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HZU52175.1"
                     /translation="MKVSEVMTRDVQTVSPDQSAREAARFMLQADAGAIPVTDGDRLI
                     GMITDRDITVRGVAEGHGPETPVRDLMTNDIVAARIDDDTDDVAIRMSEAQVRRLPVI
                     DNQHKLCGIVSLSDLTQRADSSEAEQALEGVSKPG"
     gene            complement(477..2495)
                     /gene="paaZ"
                     /locus_tag="VE968_09920"
     CDS             complement(477..2495)
                     /gene="paaZ"
                     /locus_tag="VE968_09920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylacetic acid degradation bifunctional
                     protein PaaZ"
                     /protein_id="HZU52176.1"
                     /translation="MKTAQLLNYERDRWVAGAGAVEIPSAIDGAPVATTGSGGLDFGG
                     MLRHAREIGGPALRKLTFHERARMLKAAGLAIMARKEELYELNYLTGSTRKDGWIDIE
                     GGAGTLFSFSSKGRRELPDTHVLLDGQLEGLSKNGTFVGQHIFTPLQGAAVHINAFNF
                     PVWGMLEKLAPTLLAGVPAIVKPASATAYLAEAAFKIMIDAEIFPAGAIQLIVGGVGD
                     LFDHLSCQDVVSFTGSAHTAMKLQTHPVIARESVRFVAERDSLNASVLGPDAAPGTPE
                     FDLFIKEVATEMTVKAGQKCTAIRRAMAPAQYLDAVEQALGERLARTKVGDPRAEDTR
                     MGALVSVSQRDDVRDRIRELEAAGARVVSGNPDAEPPIAGGAFMPPVLLRTDDPWRTA
                     AVHDCEPFGPVSTIMPYDGMADAIALANRGRGSLVLSMFSHSPAAAREFVQGAAAYHG
                     RMLVIDRTNAAESTGHGSPLPVLVHGGPGRAGGSEEMGGVRGVKHYMQRTALQSSPAM
                     IAAITEQYVPGAPKHVIKVHPFRLKMSELHIGDTWVTPARTISLHDIEHFAEFTGDKF
                     YAHMDEEAAKASTIFEGRVAHGYLLLSFAAGLFVDPDPGPVLANTGLENLRFLTPVYP
                     GDAIRVELTVRTKSIKSDETGQVRWAVEVFNQKDELVATYDLLTENVP"
     gene            2773..3729
                     /locus_tag="VE968_09925"
     CDS             2773..3729
                     /locus_tag="VE968_09925"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HZU52177.1"
                     /translation="MIAPVRPISIDDIERARKRIESTVLRTPLVKIDLGDRSDIRLKL
                     ENLQPTNSYKIRGAANAVASLSEEERAKGVWTISAGNAGQGVAYAARQFGVPCTVVAI
                     ETAPQTKLDRMRALGATIVPVSYDRAWVAAEKHEFAGLAGTFVHPFDNHDFIAGHATM
                     GLEILEQCPEVHSVICAIGGGGLISGVGSAIKALRPQTRVLGAEPETAAPYALSLREG
                     GPRKFEDWTASFVDGAGGKSVTERMWERMRPVTDGAITVTLDATRKAMRLTAEKSRTI
                     AEGAGSLALAAALAASEAEGPIVCVVSGGNIDLDTFAELVTR"
BASE COUNT          751 a         1176 c         1224 g          757 t
ORIGIN      
        1 cgcccggctt gctcacgcct tcgagtgcct gctcggcctc ggagctgtcg gctcgctggg
       61 taaggtcgct taagctcacg attccacaga gcttgtgctg attgtcaatg acgggaagcc
      121 ggcgaacctg cgcttcgctc atgcgtattg cgacgtcatc cgtgtcgtcg tcgatccgcg
      181 ctgcgacgat gtcattcgtc atcaagtcac gaacaggtgt ctcggggcca tggccttcgg
      241 caacgccgcg gacagtaatg tcgcggtcgg taatcatccc gatgagacga tcgccgtccg
      301 tgacgggaat tgcaccggcg tccgcctgca gcatgaaacg cgccgcctca cgcgcgcttt
      361 ggtcggggct cactgtctgg acgtcgcgag tcatcacttc gctgaccttc atcgaaactc
      421 tcctgggctt aatcggcaac ctcgaaacga acccgggatg agcgccgttc ctattgttac
      481 ggcacgttct cggtcagtag atcataggtc gcgaccagct catccttctg gttgaagacc
      541 tcgaccgccc agcgcacctg cccggtttcg tcggacttga tcgacttcgt gcgcaccgtg
      601 agctcgacgc ggatcgcgtc gccggggtag accggggtga gaaagcgcaa gttctcaaga
      661 ccggtgttgg caagcaccgg gccaggatca ggatcgacga acagcccggc agcgaagctc
      721 agcagtaggt agccgtgcgc gacacggccc tcgaaaatgg ttgacgcctt cgcggcttct
      781 tcgtccatgt gggcgtagaa tttgtctccc gtgaactccg cgaaatgctc gatgtcgtga
      841 aggcttatcg ttcgggctgg agtgacccag gtatcaccaa tgtggagttc gctcatcttg
      901 aggcggaatg ggtgcacctt gatgacatgc tttggcgccc ctggaacata ttgctcggtg
      961 attgcggcaa tcatcgcggg cgagctttgg agcgcggtgc gctgcatgta atgcttgaca
     1021 ccgcgaacgc cgcccatttc ctcgcttccg ccggctcggc ccggaccgcc atgcacgagg
     1081 acgggcagtg gcgagccgtg acccgtcgat tccgccgcgt tggtccggtc aatgaccagc
     1141 atcctgccat ggtatgccgc cgcaccctgg acgaattcgc gcgcagctgc gggagaatgg
     1201 ctgaacatcg acagcaccag acttccacga ccgcggttcg cgagcgcgat cgcgtcggcc
     1261 atgccatcat agggcatgat tgttgaaacg ggaccgaacg gttcgcagtc gtgaaccgcg
     1321 gcggtgcgcc agggatcgtc ggtccgaagc aggacgggcg gcatgaaggc tcctccggcg
     1381 atcggcggct ccgcatcggg gttaccggat accacccgag ctcccgcagc ttcgagttcg
     1441 cgaatgcgat ccctgacgtc atcacgctgg ctgacgctga caagcgcgcc catgcgcgtg
     1501 tcctcggcac gcgggtcgcc cacctttgtc ctggcaagtc gttcgccgag cgcttgctcg
     1561 acggcgtcga gatattgcgc tggtgccatg gcgcggcgga tggcggtgca cttctgtccc
     1621 gccttcaccg tcatttcggt tgcgacctcc ttgatgaaaa gatcgaactc cggcgtgccg
     1681 ggcgcggcat cggggccaag caccgacgca ttgaggctat cgcgctcggc gacgaacctt
     1741 accgattcgc gggcgataac cgggtgcgtc tgcagtttca tcgcggtgtg ggccgagccg
     1801 gtgaagctga cgacatcctg gcatgagagg tgatcgaaca gatcaccgac gccgccgacg
     1861 atcagctgga tcgcgcctgc agggaagatc tcggcgtcga tcatgatctt gaaggcagct
     1921 tcggcgagat aggccgtcgc cgacgcgggc ttcacgattg ccggcacccc cgcaagaagc
     1981 gtcggcgcaa gcttctcaag cattccccaa accgggaagt tgaaggcatt gatgtggacc
     2041 gccgcgccct gcagcggcgt gaagatgtgc tggccgacaa atgttccgtt cttcgaaagt
     2101 ccttcgagct gtccgtcgag cagcacatgg gtgtcgggaa gttcgcgccg acctttcgag
     2161 gaaaaggaaa acaaggttcc ggcgccgcct tcgatgtcga tccaaccgtc cttgcgtgtc
     2221 gagccagtga ggtaattgag ctcgtaaagc tcttccttgc gcgccatgat cgcaagtccc
     2281 gccgccttca gcattcgcgc gcgctcgtgg aacgtcagct tgcgaagcgc agggccaccg
     2341 atttcgcgcg cgtgccggag catgccgccg aaatcgagac cgcccgatcc ggtcgtcgcc
     2401 acgggtgcgc cgtcgatagc gcttgggatt tcgacggcgc ccgcgccggc tacccagcgg
     2461 tcacgctcgt agttcaacaa ttgcgccgtc ttcatgctgt tctcacttcg aaaaagataa
     2521 aaggggcgaa gtcgtgcgct cttcagtcac ttcaccactc gtggcaattg ctctctagcg
     2581 gtgtccctcg aacgactaaa gagagtgcga tgggtccact tgtccgtgga tcataaccgt
     2641 gccttcttgg tgtcgacgga aacaccccgg ggatgcgcgc tcgccgctcg tgcgcctcgg
     2701 agcgaagtca aggaactcga acctcgagag ccactcttag tcaacaaaag cgccaatcaa
     2761 gaaggcaaag acatgattgc accggttcga cccatttcaa tcgatgacat cgagcgggcc
     2821 cgaaagcgga tcgagtcgac ggtcctccgg acaccgctcg tcaagatcga tcttggcgac
     2881 cgctcggata ttcgtctcaa gctcgagaac ctccagccga caaactccta caagatccgc
     2941 ggcgcagcga atgccgtcgc gagtctttcg gaggaagagc gtgccaaggg cgtctggacg
     3001 atcagtgcgg gtaatgccgg gcagggggtt gcctatgccg cgcggcagtt tggcgttccc
     3061 tgcaccgtcg tcgcaataga gacggcgccg cagaccaagc ttgatcgaat gcgagcactc
     3121 ggtgctacaa tcgtgccggt ctcgtacgac cgggcgtggg ttgctgccga aaagcacgag
     3181 tttgcggggc tagcagggac atttgtccac ccattcgaca atcatgactt catcgccggg
     3241 cacgcgacaa tgggcctcga aatcctcgag caatgccccg aagtacattc ggtaatttgt
     3301 gcgatcggcg gcggcggcct catcagcggc gtcggcagtg cgatcaaggc acttcggcca
     3361 caaacgcgcg tgcttggcgc cgaacccgaa acagcagcgc cttatgcgct gtccctgagg
     3421 gaaggcggtc cgcgcaagtt tgaggattgg acggcttcat ttgtcgatgg agctggtgga
     3481 aaaagcgtga ccgagcgaat gtgggaaaga atgcgccccg tgaccgatgg ggcaatcacg
     3541 gtgacgctcg atgcgacgcg caaggcgatg cgactaacag ccgagaaatc gcggacgatc
     3601 gccgaagggg cgggctcact ggcgctcgcc gctgcgctcg cggcgagcga ggcagaaggg
     3661 ccgatcgtct gcgttgtttc tggcgggaac attgatctcg acacatttgc cgagctcgtg
     3721 acgcgatgac cgcggccgat ctgcgcgtgg tccacacaat tttcgttggc tcaagttcac
     3781 tttcgtgaaa aaaagtgtcg ttggaagcgg atcatcggcg aatctcttcg cgacgggcaa
     3841 aagatggagg cggcaatgac ggggatcctt ggtaaattgc aggtcgagca tcagctacat
     3901 ggcgcccg
//
LOCUS       DASRBJ010000361         3007 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_150572,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000361 DASRBJ010000000
VERSION     DASRBJ010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150572"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..559)
                     /locus_tag="VE968_09930"
     CDS             complement(<1..559)
                     /locus_tag="VE968_09930"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR02281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02281 family clan AA aspartic protease"
                     /protein_id="HZU52178.1"
                     /translation="MTNDFMLGGVYLLMALMLVLGTLMTRREPLAKLVTMALAWIAIF
                     GGGFVLLTFRDNLGWVVQRLKAEAVGTPVEQGRETRIPMAIDGHFWVNAKVNGHDVKF
                     LVDSGATTTTIDRDTAKEAGVQMSPRRDLFVRTGNGIIRVASGRASELTIGSITRRNV
                     ALEIADNDDLNVLGMNYLSSLSRWSV"
     gene            complement(559..1323)
                     /locus_tag="VE968_09935"
     CDS             complement(559..1323)
                     /locus_tag="VE968_09935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HZU52179.1"
                     /translation="MKVRILGCGTSTGVPKIGNEWGACDPSEPRNYRLRTSIMVESAG
                     NRMLVDCGPDLRQQLLAAEVNPLDGVIVTHAHGDHCHGIDELRPVSQAIGGPVPLYAR
                     PDVLEELQQRFAYAFERSEFYRPIVEALDLGQELVFGNTRVRFVDQPHGNTSSLGLRF
                     GEGIYSVGYAVDFSSLNDEMSELYEGVDVWIADCLTRKPHPTHMNLDAVLAAARDLRV
                     GALYLVHMGNGLDYRTLVAELPDWAAPAYDGLEIAL"
     gene            complement(1325..2107)
                     /locus_tag="VE968_09940"
     CDS             complement(1325..2107)
                     /locus_tag="VE968_09940"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011445587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HZU52180.1"
                     /translation="MRLIDSHCHLNYEGLVERQAEVLENARERGVSGFLNISTRRREW
                     NDIIAVAEREPDVWASVGVHPHEADAHPDLGAAALVEAADHPRVIAIGECGLDYYYDK
                     SDRTAQRDRFQAHIDAARETGLPLVVHTREAETDTAEILTSAVREGGVTGVLHCFTGS
                     AELARKGLDLGFYVSLSGIVTFKNAQDLQATAKWLPSDQMLVETDSPFLAPVPHRGHK
                     CEPAFVADTASFVAQLRGESPDQLAEATTANFFRLFKKAQGQ"
     gene            complement(2104..>3007)
                     /locus_tag="VE968_09945"
     CDS             complement(2104..>3007)
                     /locus_tag="VE968_09945"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HZU52181.1"
                     /translation="DLSFSRTTFDWGIKVPGDPEHVMYVWVDALTNYITGVGFPDESD
                     PNWPFWPADLHIIGKDIIRFHAVYWPAFLMSAGIALPKQVYGHGFLLSRGEKMSKSVG
                     NVVDPMVLADKFGVDALRYFLLREVPFGQDGSYSAEAIVNRANAELANSFGNLAQRTL
                     SMIYKNLDGVLPPEGQAAEDRRLLDQVRRATSDEVPAAFDRFAFSVGIEAWLKAVFAC
                     NAYVDSQAPWALRKTDPHRMTAVLGTLVVAVRDLTRAIAPIIPASADKLMTLIDAGEA
                     GAPIPQPVPLFPRLELPQDEEATA"
BASE COUNT          593 a          926 c          922 g          566 t
ORIGIN      
        1 cgacgctcca gcggctcaga gacgacagat aattcatgcc gagcacgttc aagtcatcat
       61 tatcggcaat ctccagcgcg acattgcgtc gagtgatcga accgatcgtg agctcggacg
      121 cgcgtccgct tgccacgcgg atgatgccgt tacccgtacg gacgaacaga tcgcgccgcg
      181 gcgacatctg cactccggct tcctttgccg tgtcacgatc gatggtggtc gtcgtcgcgc
      241 cgctatccac caggaacttg acgtcgtggc cattgacctt ggcattgacc cagaaatgtc
      301 cgtcgattgc cattgggatt cgggtttccc ggccttgctc gacaggcgtt ccgaccgcct
      361 cggccttgag ccgctggacc acccagccaa gattgtcgcg gaatgtgagc aggacgaagc
      421 cgccgccgaa gatcgcgatc caggccagcg ccatcgttac cagcttcgcc aaaggctcgc
      481 ggcgggtcat cagcgtgccg aggaccagca tcagcgccat cagcaggtag acgccgccaa
      541 gcatgaaatc gttggtcatc acagggcgat ctcgaggcca tcataggccg gcgccgccca
      601 gtcgggcagc tcggctacca gcgttcgata atccagaccg ttgcccatgt ggaccagata
      661 gagcgccccc acccgcaagt cccgcgctgc ggcaaggact gcatcgaggt tcatgtgcgt
      721 cgggtgaggc ttgcgtgtca ggcaatcggc aatccacacg tcgactcctt catagagctc
      781 ggacatttca tcatttaagc tgctgaaatc gactgcatat ccaaccgaat atatgccttc
      841 gccgaagcgc aggccgagcg agctcgtatt cccgtgcggc tggtcgacaa agcgaacgcg
      901 cgtattgccg aaaacgagtt cctgcccgag gtcgagcgct tctacgatcg gccgatagaa
      961 ttccgaacgt tcgaatgcat aagcgaagcg ctgttgaagc tcctcaagca cgtcaggacg
     1021 cgcgtaaagc ggcaccggtc cgccaatggc ctgtgagact ggcctcagct cgtcgattcc
     1081 atgacaatgg tcgccatgcg cgtgcgtgac gatgacgcca tcgagaggat tgacctccgc
     1141 cgcgagcagc tgctgacgca ggtccgggcc gcaatcgacg agcattcgat ttccggcgct
     1201 ttcgaccatg atagaggttc tcagccggta attgcgcggc tcgcttgggt cacatgcgcc
     1261 ccactcattg ccgatcttcg gaacaccggt ggacgtcccg cagccgagaa tgcggacttt
     1321 caagctattg cccttgggct ttcttgaaca atctgaagaa gttcgccgtc gtcgcttcgg
     1381 caagctggtc ggggctctct cccctcaatt gagcaacgaa gctggccgta tcggcaacga
     1441 aggccggttc gcacttgtgg ccgcggtgcg gaacgggcgc gagaaagggc gaatccgttt
     1501 cgaccagcat ctggtctgac ggcagccatt ttgccgtcgc ctgcaggtcc tgggcattct
     1561 tgaaggtaac gatgcccgag agcgagacgt agaagccgag gtcgagcccc ttgcgggcaa
     1621 gctcggccga gccggtgaag cagtggagga cgccggtaac gcccccttcc ctgaccgctg
     1681 acgtgaggat ctctgccgta tccgtctccg cttcgcgcgt atggaccacg aggggaagcc
     1741 cggtctcgcg ggcggcgtcg atatgcgcct ggaagcggtc gcgctgcgcg gtgcgatccg
     1801 acttgtcgta ataataatcg aggccgcact ctccaatcgc gatgacgcgg gggtggtcgg
     1861 ccgcttcgac tagcgccgcc gcaccgaggt ccgggtgagc atcggcctcg tgcgggtgaa
     1921 ctccgacgct ggcccagacg tccggctcgc gctcggcaac ggcgatgatg tcattccatt
     1981 cgcgccggcg ggtcgagata ttgagaaaac cggacacgcc ccgttcacgg gcgttttcaa
     2041 gcacttcggc ctgacgttcg acaagccctt cgtaattgag gtggcaatgg ctgtcgatca
     2101 gcctcacgca gtggcctctt catcttgggg aagctcgaga cgcgggaaca atggcaccgg
     2161 ctgtggaatc ggcgcaccag cctctcccgc gtcgatgagg gtcatcagct tgtccgccga
     2221 agccgggatg atcggcgcga ttgcgcgcgt gagatcgcgg actgcgacga caagcgttcc
     2281 gaggaccgca gtcatgcgat ggggatcggt cttgcgcaga gcccacggag cctggctatc
     2341 gacataggca ttgcaggcga agaccgcctt caaccacgct tcgattccga ctgagaaggc
     2401 gaaccgatcg aaagcagcgg ggacttcgtc gctcgtagcg cggcgaacct ggtcaagcag
     2461 tcgccgatcc tcggctgctt gcccttcggg cggaaggacg ccatccaaat tcttgtagat
     2521 catcgacaat gtgcgctgcg cgagattgcc gaagctgttg gcgagctccg cattggcgcg
     2581 attgacgatc gcttcggcgc tgtagctgcc gtcctgtccg aatgggactt cccgcagcag
     2641 gaaatagcgc agcgcatcga ctccaaactt gtccgccagc accatcgggt cgacgacatt
     2701 gccgacgctt ttcgacatct tttcgccgcg gctgagcagg aagccgtggc cgtaaacctg
     2761 cttcggaagc gcgataccgg cactcatcag gaacgccggc caatagaccg catgaaagcg
     2821 gatgatatcc ttgccgatga tgtgcaggtc agccggccaa aacggccagt tcggatcgct
     2881 ctcatcggga aagccgacgc ccgtgatgta gttggtgagc gcgtcgaccc agacatacat
     2941 cacgtgctcg ggatcgccgg gcaccttgat gccccaatcg aaagtcgtgc gcgagaagga
     3001 gagatcg
//
LOCUS       DASRBJ010000362         6672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_300113,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000362 DASRBJ010000000
VERSION     DASRBJ010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 6672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6672
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300113"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2890
                     /gene="pgmB"
                     /locus_tag="VE968_09950"
     CDS             <1..2890
                     /gene="pgmB"
                     /locus_tag="VE968_09950"
                     /EC_number="5.4.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF015588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008801 - beta-phosphoglucomutase activity
                     [Evidence IEA];
                     GO_process: GO:0046352 - disaccharide catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="beta-phosphoglucomutase"
                     /protein_id="HZU52182.1"
                     /translation="ANEAEWLSEASLFALADGVLGVRGGIEELRQSGGGTYLNRVYDV
                     TPISYHERFIGFPSSSDTRLPVAEGAIIEVHLGAENVSDGRILEFARFLDLCSGELTR
                     NTRWLTSSGTIDVRASRVVFGGGILAVRFEVHSVDYSGPVRFTSRLEAGGRAASQTDD
                     PRYGVGNGDRPATGDIGTDDDAAWLMQHGRFSDVGAAVAQAHRTEHLRFHETSILVES
                     ASAVFTGHLEPGGRVALEKAIAYVPFEKGEGDKALFEARERAKTCSASGYAPAAQAAA
                     QELQPFWTVAESHVHGDPELTRAMRFNLMHLYRSAPGDAKSALAAKGLTGEGYQGHAF
                     WDSEAFAVPVLALTAPKLARSDLAFRVAGLEQARSHAREMNHSKGALYPWRTIAGDEG
                     SSYFPGGSAQYHINAAIAYAVRMYDRATGDDGFVLGAASPMVFETARIWLQVGFHDAR
                     LGGAFRICGVTGPDEYTVIVDDDYYTNRLAKQHLEYALELAERAPDAPLAPDSQERFE
                     WAEAAAKMHLPLDRELGVHPQDATFLDKPGWTFRADRKDRPLLLHYHPLTLYRHQVIK
                     QASVVLAHAMTEESGRAQLRRDFDYYEPRTAHDSSLSASAHAIIAARLGRPAVACRFL
                     KDSVFVDLENLHGNVGQGLHMASMAGGWQALVWGFAGLTMGDGVLAFTPFSAPELPAY
                     GFGLSWRGSDLRVEIDSVTSRYSVSEASAPLTLFHDGVAVSIQPGETVERATPRVGLV
                     PSGAFDALVFDLDGVLTDTARAHYATWKALADDLGIPFDEKMNEELKGVDRETSLEII
                     LARADRSFDKTEKQALAARKNAQYQQLVRDFGPADLLPGAREALERARAAGIPMALAS
                     ASRNALVLLQRLGIAHFFDVIVDPARIARGKPDPAIFLAAARELGADPSRCLGIEDSQ
                     AGIQAIKAAGMTALGIGDPIVLAGADAVAPNLSTIDWQTPLAPEATPE"
     gene            2887..4164
                     /locus_tag="VE968_09955"
     CDS             2887..4164
                     /locus_tag="VE968_09955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZU52183.1"
                     /translation="MKARSSSPPFPIVLGLAATYALYGILLNSVGTVILQSISSFGVS
                     KTAGSILEACKDLTIAVVSFFLASSLPRIGYRRALIVGMLILGGGCAAMPLVHSFQMT
                     ALSYVIIGATFGLAKVVVYGTIGLVAPDPHRHASLTGFIEGVFMAGVLSGYWLFSAFI
                     DPFAKFAWLDVYWLLAGCCAALAALWALSPLDETPLRSQEQVSAVRAFASMLALVKQP
                     VVGAFLLCAFVYVLIEQGLGTWMPTFNNEVLRLSPQLSVQLASIYAMSLCAGRIGSSV
                     ILRRFSRFGFVIGCTAAMAPLVLVALAATMNAGNGPLVQSWAAVSPSVLILPLIGLLL
                     APIYPTINSVVLSALPVEQQAGMTGLIVVFSAIGGTLGSFLTARLFAAFGGRVAVAGV
                     LIPITLLLVGLLVFRRMSHNARHTAQAPLEPTA"
     gene            4326..>6672
                     /locus_tag="VE968_09960"
     CDS             4326..>6672
                     /locus_tag="VE968_09960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52184.1"
                     /translation="MGYPETGLEVWAYPLQLVSSYALRFHESGRIEPFEGRLLLSRIE
                     ATPSEIVRIYNGPDFVVREHLFVPLNAPAAIITYEVEGRPDIQIEARFEPSLNLMWPG
                     ALGGQDIAWSDARSGYVEHEPIHGFAAVIRSAQAIAHDNIVNQATNRPSALGLVMEPR
                     RGIDGVRRAELVVAEDEAQGKAAIDDPDKSSELRSEVAAHFRSILDQATEVTTPDEAV
                     NRALAASIVALEQAWVCAPQIGCGSVAGYGPSRPGRRPQYAWFFAGDGLIAVEALLAA
                     GRYERARDELEFIAKYQNKANGMIWHEMSTSAPLIDWEKRYPYMYVHVDITLQYLSTL
                     ADYVRTTGDTRFLTTHWAGVEEAWRYALSLVDRKTGLPSIPVGKEGQNEQAVLRDDVH
                     LSGAWIDAANAFAELAKVEGKTKLALDGGRAAEVARQSVLKNYWDEKSGLWFAGHTLS
                     GAPVHEERPDAVDILLEGGFDPGQAKRALDRLATPEFVTDWGVRSLSVNNPDFDPNAY
                     ASGAVWGLGSSGVATVFWKEHRPFTAWSAWHGLTSWATLDSPGHMHEVLAGDLFHPEV
                     ESVPEQTWSSAGFFSAAVHGLLGLEVRGASGAIEFAPHLPGNWGSVAIRRVRVGSSSV
                     DLHMTEDSGSISLTVANRGPAVTVEFEPETPLGARVLGGEKNGTSIVPAVTQTAEDQH
                     ARVVISAPTGTTHVVVHYSGGVRLAPVETAPLVGDSSQNVKLVSAALIGSSALKLKAY
                     VTDSDHAEIDLFTPMKIVSAEGAVVSDLGAGRARLRFHVPAN"
BASE COUNT         1237 a         1971 c         2044 g         1420 t
ORIGIN      
        1 agccaacgaa gcggaatggc taagcgaagc aagcctcttt gcgcttgctg acggtgttct
       61 tggcgtacgc ggcggcatcg aagaactgcg ccaatccggc gggggtacat atctcaaccg
      121 tgtctacgac gtcacgccaa tcagctacca tgagcgtttc atcggatttc cttcctcctc
      181 cgacacccgg ctgccggtag ctgaaggtgc aatcatcgag gttcaccttg gcgctgaaaa
      241 tgtcagcgac ggccgcattc tggaattcgc acgttttctc gacctttgct ccggcgaact
      301 aacgcgcaac actcggtggc tgacgtcaag cggcaccatt gacgtacgcg caagccgcgt
      361 cgtcttcggc ggggggatat tggccgtgcg ctttgaagtt cattcggtcg actattcggg
      421 tccggtaagg ttcacgtccc gcctggaggc cggcggtcgc gccgcgagtc aaacggacga
      481 tccgaggtat ggcgttggaa acggcgatcg ccccgcgacc ggcgatatcg gcaccgacga
      541 cgatgcggca tggcttatgc agcacggtcg tttttcggat gtcggcgcgg cagtggcaca
      601 ggcgcaccgc accgagcacc tgcgctttca tgaaacctcg atcctcgttg aaagcgcttc
      661 cgccgtcttc acgggtcacc tcgaaccggg tggtcgagta gctctcgaga aggcgattgc
      721 gtacgttccg ttcgagaagg gggagggcga caaggcactc tttgaggcaa gggaacgggc
      781 caagacatgt agcgcgagtg gctatgcgcc cgcggcacaa gcagcggcac aggagcttca
      841 gccgttttgg actgtcgctg aaagccatgt tcacggcgat cccgaactca cgcgcgcgat
      901 gcggttcaat ctcatgcacc tttaccgaag tgcacccggc gacgcgaaga gcgcgctcgc
      961 ggcgaaggga ctgactggcg agggttatca gggtcatgca ttctgggatt ccgaggcttt
     1021 cgcagtcccg gtcctggcgc tcacggcacc gaaactcgcc cgaagtgacc tcgcgttccg
     1081 ggttgcgggt ctcgagcaag cccgcagcca cgctcgcgaa atgaaccatt cgaaaggagc
     1141 gctttacccc tggcgcacca tcgcgggaga cgaaggctca agctatttcc ctgggggatc
     1201 agcgcagtat cacatcaatg cggcaatcgc ttacgcggtg cgcatgtatg atcgcgcgac
     1261 gggtgatgac gggttcgttc tcggcgctgc ctcgcccatg gtatttgaaa cggcgcgaat
     1321 atggctccag gtcggatttc acgatgcgcg tttgggcggc gcgttccgca tttgcggcgt
     1381 gacaggtcct gatgaataca ccgtgatcgt cgatgatgat tattatacaa atcggctggc
     1441 gaagcagcat cttgaatatg cgctcgagct tgccgagcgc gcgccagatg ctccgctcgc
     1501 tcccgattca caggagcgat tcgaatgggc ggaggcagca gcgaagatgc atttgccgct
     1561 cgatcgcgaa ctcggtgtac acccgcagga cgcaaccttt cttgataagc ctggctggac
     1621 tttcagagca gatcgcaagg atcggccact cctccttcat taccatccgc tgacacttta
     1681 tcgtcaccag gtgatcaagc aggcgagcgt cgtgttggcg catgccatga ccgaggagag
     1741 tggccgcgct cagctacgcc gagacttcga ttattacgag ccacgcacgg ctcatgactc
     1801 gagcttgtcg gcatccgctc atgcaatcat cgcagctcgt ctcggccgtc cggcagtcgc
     1861 ttgccggttc ctcaaggaca gcgtcttcgt cgaccttgaa aatcttcacg gcaatgtcgg
     1921 ccaaggattg cacatggcgt cgatggccgg cggctggcaa gcattggtct ggggctttgc
     1981 aggattgacg atgggagacg gagtgctggc cttcactccg ttcagtgcac cagagctgcc
     2041 tgcatatggg ttcgggctca gctggcgcgg ttccgacctc cgggtcgaaa tagatagcgt
     2101 gacttcgcgt tactccgttt cggaagcgag tgcgcctctc actctattcc atgacggagt
     2161 cgcggtctct attcagccag gcgagacggt cgagcgagca acaccgcgag tggggcttgt
     2221 tccgagcggc gcgtttgacg cgctggtgtt cgatctcgac ggcgtcctca cggataccgc
     2281 gcgcgcgcac tacgcgacgt ggaaggcctt ggcagacgat cttggaatcc cgtttgatga
     2341 gaagatgaac gaggaactga agggtgtcga ccgtgagact tcgctcgaga tcattctggc
     2401 gcgcgccgac cggagtttcg acaagacgga aaagcaggct ctcgccgcac gcaagaatgc
     2461 ccaataccag caacttgtgc gtgactttgg tcccgccgat ctattgccgg gcgcgcgcga
     2521 ggcactcgaa cgagcacgcg ctgccggcat tccaatggcg cttgcctcgg cgagccgaaa
     2581 cgcgctcgtc cttcttcaac gtctcgggat agcgcacttc ttcgacgtga ttgtagaccc
     2641 cgcgaggatt gcccgtggca agcctgatcc ggcaatattc cttgccgcag cgcgcgagct
     2701 tggcgcggat ccttctcgct gtcttggaat cgaagacagc caagccggta tacaggccat
     2761 caaggcggcg gggatgacgg cgctcgggat tggcgatccg atcgtgcttg ccggcgctga
     2821 cgcggtcgct ccgaacctaa gcactattga ctggcaaaca ccactcgctc ctgaagcgac
     2881 gcccgagtga aggcgcgttc gtcttcaccg ccgttcccga tcgtcctcgg ccttgcggcc
     2941 acttatgcat tgtacggcat cctactgaac agtgtcggca cggtgatcct gcagtcgatc
     3001 agcagtttcg gcgtctcaaa aactgcgggc tcgatccttg aggcgtgcaa ggatctcacg
     3061 atcgccgtgg tgtccttctt ccttgcttca tcgctaccgc ggattggtta tcggcgcgcg
     3121 ctcatcgtcg gcatgttgat tcttggcggc ggctgcgcag caatgccact ggtgcacagt
     3181 tttcaaatga ccgcgctcag ttacgtgatc atcggtgcaa cgttcggcct tgcaaaggtg
     3241 gtggtctacg ggaccatcgg gctggttgcc cccgaccctc atcggcacgc aagcctcacc
     3301 ggattcatcg agggcgtttt catggcggga gtgctgagcg gctactggct tttcagtgct
     3361 ttcatcgacc ctttcgccaa gttcgcatgg ctcgacgtgt actggctctt ggcggggtgc
     3421 tgtgcggcac tggccgcgtt gtgggcgctt tcaccgctcg acgagactcc gctgcgctcg
     3481 caagagcaag tctccgcggt ccgcgctttc gcctcgatgc tcgcgctcgt gaagcaaccg
     3541 gtagtgggag cattcctact ctgcgccttt gtctacgttc tgatcgagca gggtctcggt
     3601 acgtggatgc caaccttcaa caatgaggtg ctccgcctct cgccccaatt aagtgttcag
     3661 cttgcaagta tttacgcaat gtcgttgtgc gcgggccgaa ttggttcgag cgtcatacta
     3721 cgtcgcttct ctcgctttgg cttcgtgatc ggttgcaccg ccgcaatggc tccgctcgtt
     3781 ttggttgcgc tcgccgccac catgaacgct ggtaatggtc cgctggtgca gagctgggcc
     3841 gcggtttcgc cgagcgtgtt gatacttcct ctcatcgggc tgctcctcgc tcccatctat
     3901 ccgacgatca actccgtggt cttgagcgct ctgcccgtag agcagcaggc gggaatgaca
     3961 ggactgattg tcgtattttc ggcgattggt ggcacgctcg gttcatttct cacggcgcgg
     4021 ctattcgcgg cattcggcgg acgagtggcg gttgctggcg tgctcattcc aatcacgctg
     4081 cttctcgttg gactgctcgt gttcagacgg atgagccaca atgctcgcca tactgctcaa
     4141 gctcccttgg agccgacggc gtgactcgag ctcccggcat tatcctggcc atgttcttgg
     4201 cagcactctc tcctggcaat ttggcgcttg cccgcgagac cgcacaaagc gactcgttga
     4261 cgtggaattt agatgcacgc ggcccgggcc gcttcgtcgc tgcgacaggc cgccgaagcg
     4321 tggtgatggg ctacccagaa actggcctcg aagtctgggc ttatccgctc cagcttgtca
     4381 gcagttatgc gctccgattc catgaatctg gccgcatcga gccgttcgaa ggacgactcc
     4441 tcctcagtcg gatcgaagcc actccttctg aaatcgtgcg catctacaac ggacccgatt
     4501 tcgtagtccg agaacatctg ttcgttccgc tcaacgcacc tgctgcaatt atcacttacg
     4561 aagttgaggg tcggcccgac attcagatcg aagcgcgctt cgagccgtcg ctcaacctca
     4621 tgtggccagg agcgcttggc ggacaggata tcgcctggag cgatgctcgc tccggctatg
     4681 tcgagcacga accaatccac gggtttgctg ccgtgatccg atccgctcaa gcgatcgccc
     4741 atgataacat cgtgaaccag gcgaccaatc gaccgtcggc actcggtttg gtgatggagc
     4801 cacgccgagg gatcgacggg gtgcgccgcg cagagttggt cgttgccgag gatgaagccc
     4861 aaggtaaagc cgccattgac gacccggaca aaagttctga acttcgctcc gaggtcgccg
     4921 cgcactttcg gtcaatcctt gatcaagcga ctgaggtcac gactcccgat gaagctgtta
     4981 atcgtgcgct tgccgcctcg attgtcgcgc tagagcaggc gtgggtctgt gcgccgcaaa
     5041 tcggctgtgg aagcgttgcg ggctatggcc catcgcgacc cggtcgtcgg ccgcaatacg
     5101 cctggttctt cgcgggcgat gggctgattg ccgtcgaggc actgcttgcc gcgggacgat
     5161 atgagcgagc gcgcgatgaa ctggagttca tcgctaagta ccagaacaag gctaacggca
     5221 tgatctggca cgagatgtcg acgagcgctc ccttgatcga ttgggagaag cgctacccgt
     5281 acatgtacgt gcacgttgac atcactcttc agtacctttc gacacttgcc gattatgttc
     5341 ggacgacagg agacacgcgt ttcctcacca cccattgggc gggagtagag gaggcatggc
     5401 gctatgctct ctcgctcgtt gatcggaaga ctggccttcc ctcgatccca gtgggcaagg
     5461 agggacagaa cgagcaagcc gtgttgcgcg acgacgttca cctgtcgggg gcctggatcg
     5521 acgctgcgaa tgccttcgct gagcttgcga aggtcgaggg taaaacaaag ctggctcttg
     5581 atggcgggag ggctgctgag gtcgcgcgcc aatcggtgct gaagaattac tgggacgaga
     5641 aaagcggact ttggttcgcc ggacacacgc tttccggagc gccggttcac gaggaacggc
     5701 ccgacgcagt ggacatcctc ctcgaaggcg gcttcgatcc gggtcaagcc aagcgcgcgc
     5761 ttgatcgact tgcaacaccg gaattcgtca cggactgggg cgtacgcagc ctttcggtca
     5821 acaatcctga ttttgacccc aatgcttacg cgtcgggagc ggtctggggc cttggttcaa
     5881 gtggcgtagc cactgtcttc tggaaagaac accggccatt tactgcgtgg agtgcgtggc
     5941 acggcctcac ctcgtgggcg actctcgaca gtccaggtca catgcatgaa gtgctggcgg
     6001 gtgacctgtt ccatcccgaa gttgagtcgg tgcctgagca aacctggtcg tccgctggtt
     6061 tcttcagtgc agccgtgcac gggctgcttg gcctcgaagt gcggggggcg agcggcgcaa
     6121 tagagttcgc accgcacctt cccggtaatt ggggttcagt cgccatcagg cgtgtgcgcg
     6181 ttggatcatc aagcgtcgat ctccacatga cagaggatag tggatccatc agtttgaccg
     6241 tcgctaaccg cgggccagcc gtcaccgtcg aattcgagcc cgagacgccg ctaggcgctc
     6301 gcgttctcgg aggcgagaaa aatggaacgt caatcgtgcc agccgtgacc cagacagccg
     6361 aggatcagca cgcacgtgtc gtgatttcgg caccgacggg cacgactcat gtcgtggtgc
     6421 attattcggg gggagtgcgc ctcgcgcccg tcgaaactgc acctcttgtc ggcgattcga
     6481 gccagaacgt gaagctggtc tccgcggcgt tgatcgggag cagcgcactc aagctaaagg
     6541 cctatgtcac cgacagtgac catgcagaaa ttgacctgtt tacgccgatg aaaatcgtga
     6601 gcgcggaagg ggcggtggtc tcggacctcg gtgcgggccg cgctcgacta cgttttcatg
     6661 tgccagccaa cg
//
LOCUS       DASRBJ010000363         7690 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_44185,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000363 DASRBJ010000000
VERSION     DASRBJ010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7690
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44185"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(76..342)
                     /locus_tag="VE968_09965"
     CDS             complement(76..342)
                     /locus_tag="VE968_09965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010185808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HZU52185.1"
                     /translation="MPALAVIVVGTFAGHAVAGPNGVLAWGSYHRALLQRQGELSAIE
                     QERAELKHRSQLLDPNSADPDMADELVRKKLGLVRPDEVIVPLN"
     gene            complement(563..1852)
                     /gene="eno"
                     /locus_tag="VE968_09970"
     CDS             complement(563..1852)
                     /gene="eno"
                     /locus_tag="VE968_09970"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HZU52186.1"
                     /translation="MTVIVDVHARQILDSRGNPTVEVDVTLEDGSMGRAAVPSGASTG
                     AHEAVELRDGDKSRWGGKGVSRAVEAVNGEIAEEVLGFDAEDQVALDASLLALDGTPN
                     KGRLGANAILGVSLATAKAAAEAVGLPLYRYVGGVDANLLPTPMMNILNGGVHADNGI
                     DFQEFMIMPVGAANFAEALRCGAEIFHALKSGLHQAGLSTAVGDEGGFAPAINSAREA
                     LDFIDKAVRAAGYALGSDVLLALDCAASEFFKDGQYKMVGEGQTLSPREMAGFLADLA
                     RDYPIASIEDGLAEDDWEGWKALTAKLGDRVQLVGDDLFVTNVERLKRGIEEEVANSI
                     LIKVNQIGSLSQTISAVKLAQFSGYTTVMSHRSGETEDSTIADLAVALSCGQIKTGSL
                     SRSDRIAKYNQLLRIEEELGESARFAGRNALKAYKPA"
     gene            1999..2637
                     /locus_tag="VE968_09975"
     CDS             1999..2637
                     /locus_tag="VE968_09975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52187.1"
                     /translation="MSDNRTAALPDGTDTVIEGAARTQDGGTATLEDTALVTQREIPA
                     PQGDAERPIIGSGNPSNGLATPSQGQASGSTDRGNDQASIVERIRSSGEQLSSQAGEK
                     ARGIVSQGLGRTSEALANVARMVGDTAPGIEERLGPEYGDYARRAAGSIENVANSIAS
                     KDPDELIDDTRNFVRNSPGIALAGAAVLGFVVARLLKTGLAASARSDEEDDR"
     gene            2637..2978
                     /locus_tag="VE968_09980"
     CDS             2637..2978
                     /locus_tag="VE968_09980"
                     /inference="COORDINATES: protein motif:HMM:NF018980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HZU52188.1"
                     /translation="MLKPTDPGSQEERPVGELVNELIEDGKAYARAEVGLYKAIATAK
                     GKAIAIPAALFVAALFIGMAAINALVVGVVIALETFIGPLAAGFVGMLIFAAVAGLLG
                     WAGYAKLRRDL"
     gene            2975..3313
                     /locus_tag="VE968_09985"
     CDS             2975..3313
                     /locus_tag="VE968_09985"
                     /inference="COORDINATES: protein motif:HMM:NF023697.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3618 domain-containing protein"
                     /protein_id="HZU52189.1"
                     /translation="MRDTPEIIAARSEVERSRSRLMATVHELQERINPKTLARNTWQG
                     AKEKGADLAENTVDVVKSRPLAATGVVAAVTMFLAREPLIDLAAKVVGRGKKKPASSR
                     KTKVNDTENA"
     gene            3313..3723
                     /locus_tag="VE968_09990"
     CDS             3313..3723
                     /locus_tag="VE968_09990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52190.1"
                     /translation="MVTDNNGRPNDNDAGASSKRQAVIESYESVRERTLDTLTEAPLL
                     ALAGGLAAGALIAALLPASETETQLISPTARRVRNSARVALDAARQSGTQRLDELGLN
                     REKGEETIRNLLGGLGDAARASANAAVEAVRKQG"
     gene            3755..3997
                     /locus_tag="VE968_09995"
     CDS             3755..3997
                     /locus_tag="VE968_09995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4170 domain-containing protein"
                     /protein_id="HZU52191.1"
                     /translation="MSKLHLVFGGRVKDPRGLEFDMNTIDLVGVYDSYAAAEEAWRGK
                     AQGTVDDAEMKYVVVHLHRLLEPDMEGISRPKQQAG"
     gene            complement(4092..4721)
                     /locus_tag="VE968_10000"
     CDS             complement(4092..4721)
                     /locus_tag="VE968_10000"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HZU52192.1"
                     /translation="MQRFPRTATNIIAAVTALAWVIAALLGESEEAGYYLGFIPLRVE
                     LPSLVHSAVPVFLTPLTATLVHSGLVHLGFNLLILVWCGTQVERIVGAGGLTMLYLAG
                     AYAAALAQWGINPHGNVPVVGASGAISAVMGAFALSYGRARAFTNNLALNRWINVAWL
                     MAAWVVLQLMMGWLGNQQGYLLATPAHVGGFAAGLLLQRPLLLWRYRNA"
     gene            complement(4729..5208)
                     /gene="greA"
                     /locus_tag="VE968_10005"
     CDS             complement(4729..5208)
                     /gene="greA"
                     /locus_tag="VE968_10005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011445873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HZU52193.1"
                     /translation="MATAEKVPMLAEGHRKLSDELKRLRSEERPAVVEAIEEARAHGD
                     LSENAEYHAAKERQGQIEATIADLEDRLSRAMVIDPTTLSGDKVVFGATVTLTDEDEK
                     VVKYQLVGQTEADARVGRISYNSPLGRALIGRQVGDEVEVSTPSGDRYYEINKIEFI"
     gene            complement(5288..>7690)
                     /gene="carB"
                     /locus_tag="VE968_10010"
     CDS             complement(5288..>7690)
                     /gene="carB"
                     /locus_tag="VE968_10010"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HZU52194.1"
                     /translation="KVAARLAVGYTLDEIANDITGGATPASFEPTIDYVVTKIPRFAF
                     EKFRGSEALLSTSMKSVGEVMAIGRSFAESLQKALRALEIGLCGLDRVRQFENADPAE
                     LESALARATPDRLLVAAEALRQGFTAARINEIAGFDPWFLNRLQEVVEAEEQIRADGL
                     PTDARSMRRLKAMGFSDARLAQLALRSARAERAMSEAVAAAGSGVVHAAMTAMTGGIT
                     EEEVRAHRLKLGVRPVFKRIDSCAAEFDATTPYLYSTYEAPLFGEAEDEANVSERRKV
                     MILGGGPNRIGQGIEFDYCCCHAAFALGRTREGQEGAGFETIMVNCNPETVSTDPDTS
                     DRLYFEPLTAEDVLEIVRREQERGELLGVIVQLGGQTPLKLAQELQEAGVPILGTSPD
                     SIDLAEDRERFAALVQQLGLKQPANGIARSRDEALRVAERIGYPVLLRPSYVLGGRGM
                     EVVEGPQQLDHYIATAVEVSGKSPVLIDRYLRDAIEVDVDAICDGKDVAVCGVLQHIE
                     EAGVHSGDSACSIPPYSLTPKVVREIERQTRELALALKVKGLMNVQFAVKDGDVYLIE
                     VNPRASRTVPFVAKSIGRPVAKVAARVMAGESLASFGAIGRSLDYIAVKESVFPFARF
                     PGTDPVLGPEMKSTGEVMGIAREFDIAFAKALLGAGMALPQGGTAFVSVKDADKKNIE
                     PAVEKLVELGFSIIATSGTAAHLKAQGLPVEIVNKVAQGRPHIVDRLLDGDVAIVFNT
                     TEGWQSLRDSHSIRTTALNKKVPYFTTAAASVAAARAIEAIRGRALEVASLQSYYSAS
                     QG"
BASE COUNT         1603 a         2337 c         2271 g         1479 t
ORIGIN      
        1 gatttctctc cctcagcttg gcggcgggtc tataggaggc ggtgcggcac cgggcaacag
       61 ggccagcagc cgcaattaat taagtgggac aatcacctcg tccggtcgca cgagaccgag
      121 cttcttgcgc accagctcgt cagccatgtc gggatcggcg ctgttcggat caagcagctg
      181 cgagcgatgc ttcagctctg cacgttcctg ctcgattgcg ctgagctcgc cctggcgctg
      241 aaggagcgcg cggtgatagc ttccccacgc cagaacaccg ttgggaccgg caacggcatg
      301 gcctgcaaac gtgccaacga caatcaccgc gagagccggc attgcgaccc ttcggatcaa
      361 tgccaaaatt cggttatggc cgcccatcat gacgtcagaa gaatcacgag tgagtctcga
      421 acgcaagcaa aaagaatgat ttggtagaaa gagcggggat aaagttgtgg atcgggcacg
      481 atgccttcct cggcggagag aacgttccga tggttaccgg tcaagacctc gatcgtgacg
      541 tcacttcaac gggcgcaaga tgtcacgcgg gcttgtaagc cttaagtgcg ttccttcccg
      601 cgaaacgcgc gctctcgcca agttcctctt cgatacgaag cagctggtta tacttggcga
      661 tgcgatcgga gcgtgaaagg cttcccgtct tgatctggcc gcaactcaag gcgacggcga
      721 ggtcggcaat cgttgaatcc tccgtttctc cagaccggtg agacattacc gtcgtataac
      781 cggagaattg ggcaagcttc acggcactga ttgtttggct aaggctaccg atctggttca
      841 ccttgatgag gatcgaattg gctacttctt cctcgatccc gcgcttgagc cgctcgacgt
      901 tggtcacgaa caggtcgtca ccaacgagct gaacacgatc accgagcttt gcggtgagcg
      961 ccttccagcc ctcccagtca tcttcagcaa ggccatcctc gattgatgca atcgggtaat
     1021 cacgcgcgag atcggcaagg aacccggcca tctcgcgggg cgaaagagtt tgtccttcgc
     1081 cgaccatttt atattggccg tccttgaaga actcgctcgc ggcgcagtct agggcgagga
     1141 gaacgtcgct cccaagggca taacctgcgg cacgtactgc cttgtcaatg aagtccagtg
     1201 cttcgcgcgc cgagttgatt gccggcgcga atccgccctc gtcaccgaca gccgttgaaa
     1261 ggcctgcctg gtgaaggccg ctcttcaatg catggaaaat ttccgcacca cagcgcagtg
     1321 cctcggcgaa gttcgccgcg ccgacgggca tgatcatgaa ttcctggaag tcgatgccat
     1381 tatcggcgtg aacaccgcca ttgagaatgt tcatcattgg cgtcggcagc aagttcgcgt
     1441 cgacgccgcc aacgtagcgg taaagtggaa gaccgacagc ttcagcggcc gccttggcgg
     1501 tggcgagact cactccgagg atcgcattgg cgccaagccg tcccttgttc ggcgtgccgt
     1561 cgagcgccag caggctggcg tcgagcgcta cttgatcctc cgcatcgaaa ccaagaactt
     1621 cctcggcgat ctcaccattg acggcttcga cggccctgct gacgcccttc cctccccagc
     1681 ggctcttgtc accgtcgcgg agctcgaccg cctcgtgcgc tccggtcgaa gcgccggacg
     1741 gcactgcggc gcgtcccatg cttccgtctt cgagagtgac gtcaacctca accgtcgggt
     1801 tgccacgact gtcgagtatc tggcgggcgt ggacatcaac aatcacggtc atgctttcac
     1861 cttcttacgc agatgtaacg attttggctg gtgcaggcgc gtataagcag cgtaactggc
     1921 ggtgcaactt tcgacctggt tgatcgggaa cgaaggcgca aggctccggg ttcaagacgg
     1981 caaaggagga tagcgccaat gagtgacaat cgaacagcgg cattgcccga cggaactgat
     2041 acagtgatcg aaggcgcagc caggacgcaa gatggcggca ctgcaacgtt ggaggacacg
     2101 gctttggtga cccagagaga gattcccgcg ccgcaaggtg atgctgaaag gccgatcatc
     2161 ggaagcggta acccaagcaa cggactcgcc actccgagcc aaggccaggc gagcggttcg
     2221 accgaccgcg gaaatgatca ggcgagtatc gtcgagcgga ttagaagcag cggcgaacag
     2281 cttagcagtc aagccggtga aaaggcccgc gggatcgtta gccaaggtct cggacgtact
     2341 tccgaggcgc tcgccaatgt tgcccgaatg gtcggcgata cggccccggg tatcgaagaa
     2401 cggctcggcc cggaatatgg cgactatgca cgacgtgctg cgggttcgat cgagaatgtc
     2461 gcaaattcga ttgcttccaa ggatcccgac gaacttatcg acgatacgcg caatttcgtc
     2521 cgcaatagcc ccggcattgc tcttgcgggc gcagcagtcc ttggtttcgt cgttgctcgg
     2581 ctattgaaga caggcctcgc ggcaagtgcc aggagcgacg aggaagacga tcgctgatgt
     2641 tgaaaccgac cgatcccgga tcgcaggaag aacgtccagt cggtgagctc gtcaacgagc
     2701 tcatcgagga cggcaaagcc tacgcgcggg cggaggttgg actctacaag gccatcgcaa
     2761 ccgccaaggg aaaggcgatt gccattcctg cggctctttt cgttgccgcg ctcttcattg
     2821 gcatggccgc gatcaatgca ctcgtggtcg gcgtggttat cgctcttgaa acgttcattg
     2881 ggcctctcgc cgcggggttt gtcggcatgt tgatctttgc cgctgtggcg gggctcctcg
     2941 gctgggccgg ctacgcaaaa ctgaggcgag acctgtgaga gacacgcctg aaattatcgc
     3001 ggcgcggtcg gaggttgaac gcagtcgctc gcggctgatg gcaaccgtcc acgagcttca
     3061 ggagcggatc aatcccaaga cacttgcgcg caacacctgg cagggagcga aggaaaaagg
     3121 cgcggatctc gccgaaaaca cggtcgatgt cgtgaaatca cgtccgcttg ccgcgaccgg
     3181 cgtggtcgcg gcagtgacga tgttcctcgc gcgcgagcct ctcatcgatc ttgccgcaaa
     3241 ggttgttgga cgcggcaaga aaaaaccagc ctcgagtcgc aagaccaaag tgaacgatac
     3301 ggagaatgcg taatggttac cgacaacaat ggccgcccaa atgataacga tgccggagcc
     3361 agttcgaagc ggcaggcggt gatcgagagc tacgagagtg tgcgcgagcg aacactcgac
     3421 acactgaccg aagcaccgct cctagcactt gcaggtgggc tcgcggccgg cgccctgatc
     3481 gctgccctcc tgccggccag tgaaaccgag acacagctta tcagtccgac tgctcgacgc
     3541 gtcagaaaca gcgcccgcgt tgcgctggat gccgctcgcc agtccgggac acagcgcctt
     3601 gatgagcttg ggctcaatcg cgagaaaggc gaggaaacta tccgcaatct cctcggtggc
     3661 cttggtgatg ccgctcgcgc atcagccaat gcagctgttg aagcagtgcg caagcagggc
     3721 tgacgtcgac acgcgattgc gctagctgca tcgcatgagc aagctacacc tagtcttcgg
     3781 cggacgggtc aaggacccgc gcggcctaga gttcgatatg aatacgatcg atctcgtggg
     3841 tgtctacgac agctacgcag cggcggaaga agcatggcgt gggaaagccc agggcacggt
     3901 cgacgatgcc gaaatgaaat atgtcgtcgt ccatctgcac cgattgcttg agccggacat
     3961 ggaaggaatt tcccgtccca agcaacaggc cggctaagaa tcagtcgcgc accgatctgt
     4021 tgagcgccgt acggcagagc aaatcgcacg atggctggac gccgctcgag cggaacttgt
     4081 cggcgcgcgc gtcaggcgtt gcgatagcgc caaaggagca gcggccgctg taacaacaag
     4141 cccgctgcga acccgcccac gtgcgcgggg gttgcaagaa gatagccttg ctgattgcca
     4201 agccagccca tcatcagctg caatacgacc cacgccgcca tgagccacgc aacattgatc
     4261 cagcggttaa gtgcgaggtt attggtgaag gcccgcgcgc ggccgtaact taacgcaaac
     4321 gctcccataa ccgcactgat tgcgccgctt gcgccgacga cgggcacgtt tccgtgcgga
     4381 ttgatgcccc attgtgcaag cgcagccgcg taagctccag caaggtagag catcgtcaat
     4441 ccgcctgctc caacaatccg ttcaacctgc gttccgcacc agaccagaat gaggaggttg
     4501 aagccgaggt gaaccagccc cgagtgaacg agtgttgccg tcaaaggggt gaggaacacc
     4561 ggtacagccg aatgaaccag gctcggcagt tcgacgcgca acggaatgaa gccgaggtaa
     4621 tagccggctt cctcggactc gccgaggagc gcggcgatca cccaagcgag agccgtgacc
     4681 gctgcaatga tgttcgtcgc tgtgcgcgga aagcgctgca tcgggctctt agatgaactc
     4741 gatcttgttg atctcgtaat aacgatcgcc cgacggcgtt gagacttcga cctcgtcacc
     4801 gacctggcga ccgataaggg cgcggccgag cggcgaattg taactaatcc gtccaaccct
     4861 cgcgtccgcc tcggtctgcc cgacgagctg gtatttcacg accttctcgt cctcatcggt
     4921 caaggtcacg gttgcgccaa aaaccacctt gtcacccgaa agcgtcgtgg ggtcgattac
     4981 cattgctcgg ctgagccggt cttcgagatc cgcgatcgtc gcttcaattt gtccctgccg
     5041 ctccttcgcg gcatgatatt cggcgttctc gctgagatcg ccatgcgcgc gggcctcctc
     5101 gattgcctcg accactgcgg gacgctcttc gctgcgcagc cgtttgagct cgtcgctgag
     5161 cttgcggtgg ccctcagcca gcatcggcac cttttcggca gttgccattt atcaaaaacc
     5221 ctttttcaaa accctgcccc ggcggtgcct cgtggcccgc agtcgaaggc ggattgtctg
     5281 tgaaagctta gccttgggag gccgaataat aggattggag cgacgcgact tcaagcgcac
     5341 gaccgcggat ggcctcgatt gcacgcgcgg cagcaacgct tgcagcagcc gtagtgaagt
     5401 aaggcacctt cttgttgagt gccgtcgtcc ggatcgagtg gctgtccctt aacgactgcc
     5461 agccttcggt ggtattgaac acaatcgcga cgtctccgtc gagcaagcga tcgacgatat
     5521 gcggacgccc ttgcgcgacc ttgttcacga tttccaccgg cagcccctgt gccttcaaat
     5581 gggcggcggt tccacttgtc gcaatgattg aaaagccaag ctcgacaagc ttctcaacgg
     5641 cgggttcgat gtttttcttg tccgcgtcct tgaccgatac gaacgcagtt ccgccttgcg
     5701 gcaacgccat tccggcgcca agcaaagcct tggcgaaggc aatatcgaat tcacgtgcaa
     5761 ttcccatgac ttcgccggta ctcttcattt ccggtccaag aacaggatcc gttcctggga
     5821 agcgcgcaaa tgggaatacc gattccttga cggcaatata atcgagcgaa cgcccgatcg
     5881 cgccgaagga cgcaagcgac tcgccggcca tcactcgagc ggcgaccttc gcaaccggtc
     5941 ggccaatcga tttcgcgacg aatggcacgg tccggcttgc ccgtggattg acctcgatca
     6001 gatagacgtc gccatccttg acggcgaact gcacgttcat gagacccttg accttgagtg
     6061 cgagggcgag ttcccgtgtc tgtcgctcga tttcgcgcac gaccttggga gtgaggctat
     6121 aaggaggaat cgagcaggcg ctgtcgcccg aatggacccc agcttcctcg atatgctgga
     6181 gcacaccgca aaccgcgacg tcctttccgt cacagatcgc atcaacatcg acttcaattg
     6241 cgtcgcggag gtagcggtcg atcagcaccg ggctcttgcc cgacacctca actgctgtgg
     6301 cgatatagtg gtcaagttgc tgcgggcctt cgacaacttc cattccgcgc ccaccaagca
     6361 cgtacgaagg tcgcaggagt accgggtaac caatacgttc ggcgaccctg agcgcttcgt
     6421 cgcggcttct tgcaatgccg ttcgctggct gcttgagacc tagctgctgc acgagcgccg
     6481 caaagcgctc tcggtcttcg gcaagatcga tactatcagg cgacgtgccg aggatcggga
     6541 cacccgcctc ctgcagttcc tgggcgagct tcagcggtgt ctgtccgccg agttgcacga
     6601 tcactccaag caactctccg cgctcttgct cgcgccgaac gatctcgagc acgtcttctg
     6661 ccgtaagcgg ttcgaaataa agacgatcgg acgtatcggg atccgtcgag accgtctcgg
     6721 gattgcagtt gaccatgatg gtctcgaaac ctgcaccttc ctgcccttcg cgagtccggc
     6781 cgagagcgaa ggcagcgtgg caacaacaat aatcaaactc gatgccctgc ccgatacggt
     6841 tgggaccgcc gccgaggatc attaccttac gacgttcaga aacattcgcc tcgtcctcgg
     6901 cctcgccgaa caggggcgct tcgtaggtcg agtacaggta aggtgtcgtt gcatcgaact
     6961 cggcggcgca gctgtcgatt cgcttgaaca cgggcctcac gccaagcttc aggcggtgag
     7021 cgcgcacctc ctcttccgta ataccaccgg tcattgccgt catcgcggca tgaacaactc
     7081 ccgagcccgc agccgcaacg gcctcgctca ttgcgcgctc ggcgcgcgcc gagcggagcg
     7141 cgagctgtgc gaggcgagca tccgaaaagc ccattgcctt gaggcgccgc atcgaccggg
     7201 cgtccgtcgg caatccgtcg gcccggattt gctcttcggc ctcaacaact tcctgcaagc
     7261 ggttcaaaaa ccacggatcg aaccccgcaa tctcgttgat cctggcggct gtaaagccct
     7321 gcctcaatgc ttccgccgcg acgagcagac gatcaggcgt tgcccgtgcg agagcgcttt
     7381 cgagctcagc aggatcggca ttttcgaact ggcgcacgcg gtcgaggccg cagagaccga
     7441 tctcgagcgc gcgcaaggcc ttttgaaggc tctcggcaaa gctgcgccca atcgccatca
     7501 cctccccaac cgatttcatc gacgtcgaga gcaaagcttc ggacccacgg aatttctcaa
     7561 aggcaaaacg cgggatcttg gttacgacat agtcgatcgt cggttcgaag ctcgctggcg
     7621 tggcgccgcc ggtgatgtca tttgcaatct cgtcgagcgt gtaaccgacc gccaagcgag
     7681 cggcgacctt
//
LOCUS       DASRBJ010000364         3725 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_654288,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000364 DASRBJ010000000
VERSION     DASRBJ010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3725
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_654288"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..215)
                     /locus_tag="VE968_10015"
     CDS             complement(<1..215)
                     /locus_tag="VE968_10015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007677101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016846 - carbon-sulfur lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HZU52195.1"
                     /translation="MAEYEGGCACGSLRFRMADEPIFVNCCHCRECQKITGSAFAINA
                     VIEADRLELLSGSDTHAAGRQLRCDKCA"
     gene            complement(237..857)
                     /locus_tag="VE968_10020"
     CDS             complement(237..857)
                     /locus_tag="VE968_10020"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019053672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HZU52196.1"
                     /translation="MLKIIGTALLTAFVTSMFWIWYYNFLPAPQPTVARSGPVVTVKP
                     RNAAPVVVAEQVQVEPSGLAIPVVGVKPDQLTDTFDAARAQGRRHDAIDIMSPEGTPV
                     IAAADGTIEKLFNSVRGGMTIYERSPDQKWEYYYAHLSGYAPGLHEGQQVKRGEVIAR
                     VGHTGDANAAGPHLHFAINTMGPSDRWWNGTPINPYPLLAGKKAVG"
     gene            901..1653
                     /locus_tag="VE968_10025"
     CDS             901..1653
                     /locus_tag="VE968_10025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HZU52197.1"
                     /translation="MEQTTVSRRIRIGCSGWVYKHWRKIFYPEGLPEKRWFALYAEEF
                     DTVEINSSFYHLPKAQTFEKWRTQAPPGFCYSVKANRYLTQAKKLKDCEEPLERMLGA
                     VDHLGDRLGPMLYQLPPSMKINLERLESFLKILPPRQTNVFEFRNEDWYVSATYALLD
                     RYGASFCVHDMPGSKTERIAVGPIVYVRFHGGEGKYWGRYSDEGLLSWTDWLIEQSRN
                     GRQCWCYFNNDIHGHAIEDARTLKSMVGQLAR"
     gene            complement(1718..1987)
                     /locus_tag="VE968_10030"
     CDS             complement(1718..1987)
                     /locus_tag="VE968_10030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52198.1"
                     /translation="MADQKEPMQADGSGGVGTEIAEEKTPPSAGRPDMGENRGESGGG
                     AYPNPHEGKERRDFHGGQSEPGYFGEGQLGSKKVGETHNAVDRED"
     gene            complement(2040..2705)
                     /gene="thiE"
                     /locus_tag="VE968_10035"
     CDS             complement(2040..2705)
                     /gene="thiE"
                     /locus_tag="VE968_10035"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HZU52199.1"
                     /translation="MDPVTQEFAEDFAPRTEAECKLYLISPQEVGGDFPDRLNAALEP
                     GLAAAFQLRVKQVDEQELLRLAEPLQRICADKGVAFIVNDSIAVAKSLGADGVHLGQA
                     DGEVRDARRLLGPSAQIGKTCHDSRHLAMEAGEAGADYVAFGAFYPTTTKATQFHPDP
                     SLLTWWSTLFEIPCVAIGGINQANAKRLVEAGADFIAVCQAIWGNDDPQAAVRAFGGV
                     ISR"
     gene            complement(2708..3607)
                     /locus_tag="VE968_10040"
     CDS             complement(2708..3607)
                     /locus_tag="VE968_10040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007714814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose bisphosphate aldolase"
                     /protein_id="HZU52200.1"
                     /translation="MNQSEMASKIAQGNGFIAALDQSGGSTPKALKGYGIEEGAWSND
                     EEMFDLIHKMRERIITSPCFGSGKVIGAILFERTMDGQIAGKPAPQALIDQGVVPFIK
                     IDKGLEAEENGVQLMKPMPDLDSLLVRAKGLGVFGTKERSVINVANREGIAAIVRQQF
                     EVARHVLRHGLMPIIEPEVNIKSPSRDEADRILLDELLNHLDELAEGEQVMLKLSIPA
                     QAGLFQPLVDHPGVLRVVALSGGFSREEACRALARNPGMIASFSRALLSDLRHQQGEK
                     EFNQTLEDAINEIYEASVSEVPV"
BASE COUNT          721 a         1161 c         1059 g          784 t
ORIGIN      
        1 gcgcacttgt cgcatcttag ctgccggccc gcggcgtggg tgtcgctccc actcaacagc
       61 tcgagacgat cggcttcgat caccgcgttg atggcgaatg ccgagccggt gatcttctgg
      121 cactcccggc agtggcagca atttacgaag atcggctcgt cggccattcg aaagcgcagg
      181 gacccgcacg cgcagccgcc ttcatattca gccatgtcga tgctcctcga gcggcgctaa
      241 ccgactgcct tcttgccggc aagcagcgga taggggttta tcggtgtccc gttccaccag
      301 cggtcgctcg gccccatcgt gttgattgcg aagtgcagat gcggcccggc cgcgttcgca
      361 tcgccggtgt ggccgacgcg cgcgatcacc tcaccgcgct tgacctgctg cccctcatgg
      421 agacccgggg cgtagccgga gagatgagca taataatatt cccacttctg atcgggtgaa
      481 cgttcgtaaa tggtcattcc gccccggacg ctgttgaaca gcttttcgat tgttccatca
      541 gcggccgcga tcacgggagt gccctccggg gacatgatgt cgatcgcgtc gtgacgcctc
      601 ccctgcgccc gtgcggcatc gaacgtatcc gtcagctgat ccggcttgac cccgacgacc
      661 gggatcgcga gcccagaggg ctcaacctgc acctgctcgg caacgacaac gggcgctgcg
      721 ttcctcggct ttaccgttac gacaggacca gagcgtgcga ccgtcggctg aggagcgggc
      781 aagaaattat aataccaaat ccagaacatg ctcgtgacga aagccgtcag caatgctgtg
      841 ccgatgatct tgagcatggg ttcgcaactc tcaagcggtg aacgttgttc agctggaacg
      901 atggaacaaa caactgtttc ccgccgcatt cgcattggct gttcgggctg ggtgtacaag
      961 cattggcgga agatcttcta tcccgaaggg ctgccggaga agcgctggtt cgcgctttat
     1021 gccgaggaat tcgacacggt cgagatcaac agcagtttct accatcttcc caaagcgcaa
     1081 acgttcgaga aatggcggac ccaggcaccg cccggtttct gctattccgt gaaggcaaac
     1141 cgctatctca cccaggcgaa gaaactgaag gactgcgagg agccgctcga gcgcatgctc
     1201 ggcgccgtcg atcatctcgg ggaccggctt gggccgatgc tctaccagct accaccgagc
     1261 atgaagatca accttgagcg cctcgaatcc tttctcaaga tccttcctcc tcggcaaacc
     1321 aacgttttcg agttccgcaa cgaggattgg tatgtttcag cgacctatgc gctgttggat
     1381 cgctatggcg cgtccttttg cgttcacgac atgcccgggt ctaaaaccga acgaatagcg
     1441 gtgggaccaa tcgtttacgt gcggttccac ggcggcgagg gcaaatattg gggtcgctac
     1501 tcggacgagg ggctactgag ctggaccgac tggctcatcg aacagtcacg gaacggtcgc
     1561 caatgctggt gttatttcaa caatgacatc cacgggcacg cgatcgagga cgcaaggacg
     1621 ctaaagtcaa tggtcgggca gctggcgcgg taaagtggat cggcaggcgt cgggttcgct
     1681 ttgcacggcc catgcaccgc tgcgagcgcg ctcctcgtta atcctcccga tcgacggcgt
     1741 tgtgggtttc gccgaccttt ttggagccca gctgtccttc accgaaatag ccgggctcgc
     1801 tttgaccgcc atgaaagtcg cgtcgctcct tgccttcatg ggggttcgga taggctcccc
     1861 cgcccgactc accacgattt tcgcccatgt ccggccgccc ggcgctcggc ggggtcttct
     1921 cctcggcaat ctccgttccg acaccgccgc tgccgtcggc ttgcatcggc tctttctggt
     1981 cagccatcga ctgctccttt gcagggaatg aacccccttc aagctctcct cgttccgatt
     2041 cagcgtgaaa ttacgccgcc gaacgcgcgc acggcggctt gaggatcatc attcccccag
     2101 attgcctggc aaacggcgat aaagtccgcg cccgcctcga cgagacgctt ggcattggct
     2161 tgattgattc cgccgatcgc aacgcacggt atctcgaaca aggtggacca ccaggtgaga
     2221 aggctcgggt ccggatggaa ctgcgttgcc ttcgtcgtcg tcggatagaa ggcgccgaag
     2281 gcgacatagt ccgcacccgc ttcaccagct tccatcgcaa gatgtcggct atcgtgacag
     2341 gtcttgccga tctgcgcgct cggaccaagc aagcgacgcg cgtcgcggac ctcgccatcg
     2401 gcctggccga ggtgaacacc atccgcgccg aggctctttg cgacggcaat actgtcattg
     2461 acgatgaacg cgacaccctt atccgcgcag atacgctgca atggctcggc caatctcagc
     2521 agctcttgct cgtcgacctg cttgaccctc agctgaaagg cggccgcaag gccgggctca
     2581 agcgctgcgt tcagccggtc tggaaaatcg ccgccaactt cctgcggact aatgagatag
     2641 agcttgcact cggcttccgt tcgcggcgcg aagtcctcgg caaattcttg agtgaccggg
     2701 tccaaagtca gactggcacc tcacttacgg aggcttcgta gatttcgttg atcgcgtctt
     2761 cgagcgtctg attgaattcc ttttccccct gctggtgcct gaggtcagaa aggagcgcgc
     2821 ggctgaagct cgcaatcatc ccaggattgc gagcgagcgc acggcacgct tcctcgcggg
     2881 agaaaccgcc ggagagtgca acgactcgaa gaacgccggg gtggtcgacg agtggctgaa
     2941 acagacctgc ctgcgcgggg atcgaaagct tcagcatcac ttgctcgcct tcggcgagtt
     3001 catcgagatg gttgagcagc tcgtcgagca gtatccggtc ggcttcgtcc cttgatggac
     3061 ttttgatatt cacttccggc tcgatgatgg gcatcaaccc gtgacgcaga acgtgccgcg
     3121 cgacttcaaa ttgctgcctc acgattgcag caattccctc acggttcgcg acattgatga
     3181 cggagcgttc cttggtccca aagacaccca gtcccttcgc gcgaacgaga agcgagtcga
     3241 gatccggcat tggcttcata agctggacgc cgttttcctc ggcttcgagt cccttgtcga
     3301 tcttgatgaa tgggacgaca ccctggtcga taagcgcctg gggagctggc tttccggcaa
     3361 tctgtccatc catcgtccgc tcgaagagga tagcgccgat tacctttccg ctgccaaagc
     3421 acggcgacgt gatgatccgc tcgcgcatct tgtggatgag gtcgaacatc tcctcgtcat
     3481 tcgaccatgc gccttcctca attccatagc ccttcaacgc cttcggcgtg gagcctccgg
     3541 actggtcaag tgccgctata aagccattac cttgcgcgat cttcgacgcc atctcggact
     3601 gattcattcg ttacccctat tccaaagacc ccgtaagctt cgtgccgtcc acttctcgca
     3661 atcactgacg ctccaaggca gcgacaccgg ggagcgttcg accttccatc cattcaagga
     3721 aagcg
//
LOCUS       DASRBJ010000365         2570 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_150991,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000365 DASRBJ010000000
VERSION     DASRBJ010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150991"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(37..1032)
                     /locus_tag="VE968_10045"
     CDS             complement(37..1032)
                     /locus_tag="VE968_10045"
                     /inference="COORDINATES: protein motif:HMM:NF020650.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HZU52201.1"
                     /translation="MLKTVMTMAVAALTIASFGNSASAQDQVNVRFSWKLKGEYAPLY
                     LADEKGFFANKNVKVRLGEGAGAPAALGALLQGQEDVVILPGIFAISAIQKGMPVKLI
                     AVWHPRTPVTIISHPDKPVLKPKDMEGKSIAVSVGETGTTYLDTFCQINHVDCSKIKR
                     VQVDAASRVNYFLQGQVDMVSVYQTNDLPALEEKVGKAFPKLDMAANGLAVPGLSAVS
                     SDTDINKRADVLKRFLAAVDEGIAATRQDPKLAAEVLLKHWPAGPSLNVVEQQVRATV
                     DAIKPENGHPAGWIDPKLITSSLDLLKTESDIGKPRPVDVFYTNTLLPNAPVKTQ"
     gene            1221..1925
                     /locus_tag="VE968_10050"
     CDS             1221..1925
                     /locus_tag="VE968_10050"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HZU52202.1"
                     /translation="MNRARARRGQVQDAVLQKIRKGLMIGAFVPGQVMSLRKLASSLG
                     TSPMPVREALKQLIAANALEELPNHTVRVPRLSAERIAELFHVREVVEGMAAKVACAK
                     ATPALVEQLDSINRELIDAIERRDILACLAKNQSFHFTLYQAANSATLSPLIESLWLQ
                     CGPTMYFSLLSPAMPWDASAHAEMLDGLRAKRPAAVQRALARDLRTTAKNLLRSAPPH
                     MDGFSSAEFSKLDAAF"
     gene            1997..>2570
                     /locus_tag="VE968_10055"
     CDS             1997..>2570
                     /locus_tag="VE968_10055"
                     /inference="COORDINATES: protein motif:HMM:NF014542.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HZU52203.1"
                     /translation="MSISPIPVHVLTGFLGSGKTTLLRKLLADPALADTAVIINEFGE
                     VGLDHLLVRELSEDVVLLASGCVCCALKDDLTATLAELQHAAATGEIPHFDRVVLETT
                     GLADPLPIMRVLRLDARVTRHFALGQVATTVDAVHGLHTLESYGEAVQQIAASDCLIL
                     TKTDVAAERDVQRLSQRLASLNPTARRLTSG"
BASE COUNT          481 a          803 c          752 g          534 t
ORIGIN      
        1 ccgcttcttg ttcatgatct gcagaatccc ttgcgcttat tgggtcttca ccggggcgtt
       61 cggcagaaga gtgttcgtgt agaacacgtc caccggcctg ggcttgccga tatcggactc
      121 ggtcttgaga agatcaagcg atgacgtaat cagtttggga tcgatccagc ccgccggatg
      181 cccgttttcc ggcttgatag catcgacggt cgcccgcacc tgttgttcga cgacgttgag
      241 cgacggaccg gcgggccagt gcttcaacaa cacctctgcc gcgagcttgg gatcttgacg
      301 cgtcgccgcg attccctcgt cgactgcggc caaaaacctc ttcagtacat cggctcgttt
      361 gttgatgtcg gtgtcgctac tgaccgcaga tagccccggc accgccagcc cgtttgcagc
      421 catgtcgagc ttcggaaacg ctttgccgac cttttcttcc aacgccggca gatcgttggt
      481 ctgatagacg gagaccatat cgacctgacc ttgcagaaag taattgacgc gtgatgcagc
      541 atccacctgc acgcgtttga tcttgctgca atcgacgtga ttgatctggc agaatgtatc
      601 caggtaggtg gtgcccgttt cgcccaccga caccgcgatc gacttgcctt ccatgtcctt
      661 cggcttcagc accggcttgt cggggtggga aatgatcgtc actggcgtcc gcgggtgcca
      721 cactgcgatc agtttgacgg gcattccttt ttggatcgcc gaaatcgcaa atatgcccgg
      781 gagaatgacg acatcttcct ggccctgcag caacgccccg agcgcggcag gggcaccggc
      841 gccctcgccg agccgaactt ttacattctt gttggcgaag aagcctttct catcggccag
      901 ataaagcggt gcatattcgc ccttcagctt ccagctgaac cggacgttga cctgatcctg
      961 cgcgcttgcc gaattcccga agcttgcgat ggtgagcgca gcgacggcca ttgtcattac
     1021 ggtcttgagc atgaactcct cctcatcccg ttggcctcat cgcttggccg ttgacgcgaa
     1081 cagccgcaga agccagggtt gcgcagtccg tcttgatcac atagtgtgat cacagtcaaa
     1141 aaccctgtca agcaagttgc gactggatca cgtacgcgaa ccgcatgagg atctccgagc
     1201 ttcagcacgc atccggaagc atgaaccggg ccagagcacg acgcgggcag gttcaggatg
     1261 cagtcctgca gaaaattcga aagggcttga tgatcggtgc gttcgtgccc ggccaggtga
     1321 tgagcttgcg caagctcgcg tcgagtctcg gaaccagccc aatgccggtc cgcgaggcgc
     1381 tcaagcaact gatcgccgca aacgcgctcg aagagttgcc caatcacacg gtcagggtcc
     1441 cgcggctgtc ggccgagcgg attgccgaac tgttccatgt ccgagaggtc gtcgagggca
     1501 tggccgccaa ggtcgcatgc gccaaagcga cgccggctct cgttgagcaa ctcgattcga
     1561 tcaatcggga gttgatcgac gcaatcgaga ggcgagacat cctggcctgt ctcgccaaga
     1621 accagagctt tcacttcacc ctgtatcagg ccgcgaattc cgccacgctt tcccctttga
     1681 tcgagtcgct gtggctgcag tgcggaccga caatgtattt ctcccttctc tcgcccgcta
     1741 tgccatggga tgcgtccgcg catgccgaaa tgcttgacgg tctacgcgca aaaaggccgg
     1801 ccgccgtcca gcgagccctc gcacgcgatc tgcgcacgac cgccaaaaac ctgcttcgga
     1861 gcgcgcctcc gcatatggac gggttctcgt cagccgaatt ttcaaagctc gatgcggcat
     1921 tctagcgcag acgcgtcgag gcgcgcgcag ctgacatgag cggcgcgctt gttttcgcgc
     1981 gaggggccgg cgcgacatga gcatcagccc gatcccggtt cacgtgctca ccggattttt
     2041 gggtagcggc aagacgacgc tgctgcgcaa gctgctggcg gatcccgcct tggcggacac
     2101 ggcggtcatc atcaacgagt tcggcgaggt gggtctcgat catctgctcg tccgcgagct
     2161 gagcgaggac gtcgtcctgc tcgcgtcggg ttgcgtttgc tgcgcgctga aggacgatct
     2221 gaccgcaacg cttgcggagc tccagcacgc ggccgcgaca ggcgagattc cccattttga
     2281 ccgcgtcgtt ctcgaaacga cgggacttgc cgatcctctg ccgatcatgc gcgtcctgcg
     2341 ccttgacgcg cgcgtcacca ggcatttcgc gctcggccaa gtcgcgacca cggtcgatgc
     2401 cgtgcatggg ttacatacgt tggagagcta cggcgaagcc gttcagcaga ttgcggcctc
     2461 cgattgtctg atcctgacaa agaccgacgt cgcagccgag agggatgtcc agcgactctc
     2521 tcagcggctc gcgagcctca atcctaccgc ccgacgcctc acgtctggcc
//
LOCUS       DASRBJ010000366         2632 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_45299,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000366 DASRBJ010000000
VERSION     DASRBJ010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2632
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45299"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1872)
                     /gene="lptD"
                     /locus_tag="VE968_10060"
     CDS             complement(<1..1872)
                     /gene="lptD"
                     /locus_tag="VE968_10060"
                     /inference="COORDINATES: protein motif:HMM:NF016348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0010033 - response to organic substance
                     [Evidence IEA];
                     GO_process: GO:0061024 - membrane organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HZU52204.1"
                     /translation="MRAKLVWWSALPLLLTLPAAASAAQASASAPAPPGPVPPGPVPP
                     AAQEDQIVTFSADQVSYDNDTDIVTASGDVRMNREGNYLAADQVIWNRKTGRVHASGN
                     VVMVTPQGDKVVGDNVELTDTMRDGTVSNLLVVLESGGRIAAQRGSRVDNVNIFYNAI
                     YSPCPVTNDRGCPKRPSWSITAARVIDDPKSDRIRFEAGHFQLFGINIPLLPIFNVPR
                     TNEGTSGWLVPEFALSSRNGFQLADPYHWQIAKNRDLTITPHLYTKVLPAIALDYREL
                     NSLGAFQVGGFLTYGRIDNSSLVPNPDTSRSFRGYFDANGRWQLSPEWSITTSLRIAS
                     DKTVTRRYDITNDDRLRNVIEAERITPDSYISISGWAFQGLRAEDNQKQIPIALPVID
                     AHWRFDDIAGGKLEIQGNSLAITRIDGQDTQRAFASVRWDLRRLTPWGQEVTLTAYGR
                     GDLYHTDDAQDTAIDLYSGTNGWHTRAIGALAADVKWPFVGPLLGGLQTLVPRVQVVL
                     TPPTPNLDIPNEDARAIELEDSNLFALNRFPGYDRWEDASRITYGFDWSLERKNLSIE
                     SNIGQSFRFGRLPEIFPEGTGLTGQVSDIVGRTTIKYGRLIELTQRYRIDKSDFAIRR
                     "
     gene            2035..>2632
                     /locus_tag="VE968_10065"
     CDS             2035..>2632
                     /locus_tag="VE968_10065"
                     /inference="COORDINATES: protein motif:HMM:NF014808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M17 family peptidase N-terminal
                     domain-containing protein"
                     /protein_id="HZU52205.1"
                     /translation="MQIRFADRKPSGDYALVVPVAGKDRSALNSLAAAQQSVSAALDR
                     TRFDGEVGTSAEHFFDDQGTTRRLLIIGAGSKAAPAEAAEKIGGSVAAKLQTSGEKTA
                     VIDATALGYDSDSAARIALGAALRSWRYDRYRTKLKDNQKPSLQELVIVGAPPGAAQR
                     YEERWAPVAEGVSLTRELVTEPANIIYPESFVERVRQSV"
BASE COUNT          512 a          767 c          801 g          552 t
ORIGIN      
        1 gcgccgtatg gcaaaatcgc tcttgtcgat acgatagcgc tgggtgagtt cgataagacg
       61 gccatatttt atcgttgttc ttccaacgat atcggagacc tggccagtga gaccagttcc
      121 ctcgggaaag atttccggca gccgaccgaa acggaagctc tggcctatat tgctttcgat
      181 cgacaggttc ttgcgttcga gcgaccagtc aaagccatag gtgatccgcg aggcgtcttc
      241 ccagcgatca tagcccggga accgattgag agcgaacaga ttgctgtcct cgagctcgat
      301 tgcgcgcgca tcttcattgg gaatgtcgag attgggtgtc ggcggcgtga gaaccacttg
      361 cacgcgcgga acgagcgtct gaaggccgcc cagcaacggt ccgacgaaag gccatttgac
      421 gtcggcggca agagcaccaa tggcccgcgt gtgccacccg ttcgtaccgc tatagaggtc
      481 gatcgccgtg tcctgcgcgt cgtcggtatg gtatagatct cctcgaccgt aggccgtgag
      541 cgtaacttcc tgcccccacg gggtgagcct gcggagatcc catcgaacgc tggcaaatgc
      601 tcgctgcgtg tcctgaccat cgatccgagt gatcgcaagg ctgttgccct ggatttcgag
      661 cttgccaccc gcaatatcat caaagcgcca atgcgcgtcg atgacgggca aagcgatcgg
      721 aatttgtttc tggttatcct cggcgcgaag tccctggaat gcccagccgg aaatcgagat
      781 atagctgtca ggagtgatcc tttcagcttc gatgacattt cgcaggcgat catcgttggt
      841 gatgtcgtat cggcgcgtga cggtcttgtc gcttgcgatc ctgagcgagg tcgtgatgct
      901 ccactcgggg cttagctgcc agcgtccgtt cgcatcgaaa tagccgcgga agctgcgact
      961 ggtgtcaggg ttcggaacga ggctcgaatt atcgatcctg ccgtaagtca ggaacccgcc
     1021 aacctgaaat gcgccgaggc tgttaagctc gcgatagtcg agcgcgattg cgggcagaac
     1081 cttggtatag aggtgtggcg ttatcgtgag atcgcgattc ttggcgattt gccagtgata
     1141 gggatcggcc aactggaagc cattgcggct cgacaaggca aattcgggga ccagccagcc
     1201 gctcgttccc tcgttggtgc gcgggacatt gaaaatgggc aggagcggga tgttgatccc
     1261 gaagagctga aaatgcccag cttcaaagcg tattcgatcg cttttgggat cgtcgattac
     1321 tcgcgccgcg gtaattgacc agctcggccg cttggggcag ccgcggtcat tcgtcaccgg
     1381 gcatggcgag tagatcgcgt tgtagaagat atttacattg tcgacccggc tgccgcgctg
     1441 cgccgcgatg cgtccgccgc tttcgagaac gacgagcaga ttgctgaccg ttccgtcgcg
     1501 catggtgtcg gtaagctcga cattgtcacc aacgaccttg tcgccttgcg gggtcaccat
     1561 gacgacgttg ccgctcgcgt gaactcgacc ggtcttgcga ttccagatga cctggtcggc
     1621 ggcaagataa ttgccttcac ggttcatccg gacatcgccg cttgcagtta caatgtccgt
     1681 atcgttgtca taggaaacct ggtcggcact gaacgtgacg atctgatcct cctgtgccgc
     1741 aggcggcacc ggaccaggcg gcaccggacc gggcggcgca ggcgcactcg cgctcgcttg
     1801 cgcagcagaa gcggctgcgg ggagcgtcaa gagcagtggc agcgccgacc accagaccaa
     1861 tttcgcccgc aactctactc cgcccgccct cgagtgaccg tttgttgcgg gtgcctatcg
     1921 cacctcgagc gcgtgccgac aatcgcctgt caaaccttgc accgctcctt tgccaaggtt
     1981 tgacttgcac cctaaagggc gcggcgagca ttcgtctttt cgaggatatc ttagatgcaa
     2041 attcgtttcg ccgatcgaaa gcccagcggc gattacgcac tggtagttcc tgtcgctggg
     2101 aaggaccggt cggcgctcaa ctcgctcgcg gccgcccaac agagcgtgtc ggctgctctc
     2161 gatcgcacgc gtttcgacgg cgaagtcgga acctctgccg agcatttctt cgatgatcag
     2221 gggacgacga ggcgcctgtt gatcattggg gcaggatcga aggcggcacc cgctgaagct
     2281 gctgaaaaga tcggcggatc cgttgctgca aagttgcaga cttcgggcga gaagaccgcg
     2341 gtcatcgatg caaccgcgct tggttacgat tcggattcgg cagcgcgcat cgcccttgga
     2401 gccgcgcttc gctcctggcg ctatgatcgc taccggacca agctcaagga caaccagaaa
     2461 cctagcctcc aggagctggt cattgtcggc gctcctccag gtgccgctca gcgctacgag
     2521 gagcgctggg cgccagttgc cgaaggtgtg tccctgacgc gcgagctcgt caccgagccg
     2581 gcaaacatca tctaccccga aagcttcgtt gagcgcgtcc gccagtcagt ca
//
LOCUS       DASRBJ010000367         2639 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_301694,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000367 DASRBJ010000000
VERSION     DASRBJ010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301694"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1013)
                     /locus_tag="VE968_10070"
     CDS             complement(<1..1013)
                     /locus_tag="VE968_10070"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF013413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070573 - metallodipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane dipeptidase"
                     /protein_id="HZU52206.1"
                     /translation="MIIDRRNLLAGAAAAMASAPVVAQRSASQAGWYRNAIVVDGLGG
                     LSDPYAKHDELRLTDRAWAETRMTGITAVRDTLLPVGNHADGWEQFTRNLGLYHEKLA
                     ANSDRLKLVEQASDISKCKREGKLGVILGTQDTAMVGPALDRLSLMKKQGVRCIQLTY
                     NLANLSGDGSIEPRNSGLSSLGRDTIRRIEAEKLLLDLSHGGARTIEEAVAFAARPLT
                     ISHTGSRAITDHPRNVSDAVIRAVSSKGGVVGIYFMPYLAKDMHTSGTMLVNHIEHIA
                     NVAGEDHVSIGTDGGVLPVLIDAAAVEHAREDYQQRHAAGIAAPGEGPDVFPLVRDYN
                     SID"
     gene            1082..2125
                     /gene="ruvB"
                     /locus_tag="VE968_10075"
     CDS             1082..2125
                     /gene="ruvB"
                     /locus_tag="VE968_10075"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003039239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HZU52207.1"
                     /translation="MAADPARITTPERTSEDADAALRPKTLDEFIGQQSARENLRVFV
                     NAARSRGEALDHVLLHGPPGLGKTTLAGILAREMGVGFRATSGPVIAKSGDLAALLTS
                     LEDGDVLFIDEIHRLNPSVEEVLYPAMEDRALDLMIGEGPSARSVRIELPRFTLVGAT
                     TRQGLLTTPLRDRFGIPVRLNFYTVEELEQVVGRAARLLGADLSEDGGREIARRSRGT
                     PRIAGRLLRRVRDFAHASGSHVIDCSLADRALSRLEIDGLGLDAMDRRYLMMIADLYG
                     GGPVGVETLAAGLSEPRDTIEEVIEPYLIQLGLIARTARGRCLNGRGYVHLGLPVPDA
                     GQPGLFGQGAASK"
     gene            2125..>2639
                     /locus_tag="VE968_10080"
     CDS             2125..>2639
                     /locus_tag="VE968_10080"
                     /inference="COORDINATES: protein motif:HMM:NF022732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3089 domain-containing protein"
                     /protein_id="HZU52208.1"
                     /translation="MVRLIVAAFLSVAAGTALAADPDVPQAPAPDYSIESSWLCLPGR
                     ADVCSAPLPTTTLGPNGYGSKISGARSNDPPLDCFYVYPTVSRDPGLNSGLDVADAKG
                     VTAVQFARFSSVCRTFVPIYRQMTVSAVAAYSAGFDITPAAELAYRDVAAAWANYLSS
                     RNHGRPFILVG"
BASE COUNT          471 a          794 c          805 g          569 t
ORIGIN      
        1 ttatcgatcg agttgtagtc acgaacaagc ggaaaaacgt cgggtccctc gccaggtgcc
       61 gctatgccag ccgcgtggcg ctgctgataa tcctcgcgcg catgttcgac cgcggcggca
      121 tcgatgagga cgggcagcac acccccgtcg gtgccgatgg aaacgtgatc ttcgccagcg
      181 acattggcga tatgctcaat atggttgacg agcatcgttc ctgaggtgtg catgtccttt
      241 gcaagatagg gcatgaaata gatgccgacg acgccacctt tgctcgagac ggcgcggatg
      301 acagcgtccg aaacgttgcg cgggtgatcc gtgattgctc gagagccagt atggctgatc
      361 gtcagtggcc gcgcggcaaa agctaccgct tcctcgatcg ttcgcgctcc accgtgcgaa
      421 agatcaagca agagcttctc ggcttcgatt cgccgaatgg tgtcgcggcc aagagaagaa
      481 agacccgagt tccgcggttc tattgaaccg tcgccgctca aattggcgag attgtaggtg
      541 agctggatgc accgcacccc ctgcttcttc atcagcgaaa ggcgatccag cgccggcccg
      601 accatagcgg tgtcctgagt gccaaggatc actcccagtt tcccctcgcg tttgcacttg
      661 ctgatgtcgc tcgcttgttc gaccagcttc agccgatccg aattcgcggc gagtttctcg
      721 tggtagagtc cgaggttcct ggtgaactgc tcccatccgt cggcatggtt gccgacgggg
      781 agcagcgtat cgcgcactgc tgtaatgccg gtcattcgag tttcggccca cgctcggtcc
      841 gtcaggcgaa gttcgtcatg cttcgcgtaa ggatcgctga ggcccccgag cccgtccacg
      901 acaatggcat ttcgatacca gcccgcctgg cttgccgaac gttgggcgac aacgggcgcg
      961 gacgccatcg ccgcggcggc ccccgcgagc aaatttcgtc ggtcaatgat catacgcggt
     1021 ccttaatgcc tcaccgtcgc tccttgtcct aaggcgatcc atctgcgaat caacgccagc
     1081 aatggcagca gatcccgctc gtatcacgac tcccgaacgg acgtcggaag acgccgatgc
     1141 ggcgctccgt ccgaaaactc tcgacgagtt tattgggcaa cagtccgcac gggagaacct
     1201 tcgggtattc gtcaatgctg ccaggagtcg cggtgaggcg ctcgaccatg ttttgcttca
     1261 cggcccgccc gggcttggca aaacgactct cgccggcatc cttgcacgcg aaatgggcgt
     1321 cggctttcgt gcgacgtcgg ggccggtaat cgcgaagtct ggtgacttgg cggcattgct
     1381 gacgagcctt gaagatggtg acgtcctatt tatcgatgag atccatcgct tgaacccctc
     1441 ggtcgaggaa gtgctctatc cggcaatgga agatcgggcg ctcgatctca tgattggcga
     1501 agggccgtct gcgcgatcgg tgcgaatcga gctgccacgc ttcacgctcg ttggggcaac
     1561 aacgcgccag ggtctcctca cgactccgct gcgtgatcgt ttcggtattc cggtgcgcct
     1621 caacttctat acggtggaag agctcgaaca agtcgttggt cgtgccgctc gattgcttgg
     1681 ggccgacctt agcgaggatg gcggtcgcga gatcgcccgg cggtcacggg ggacaccgcg
     1741 catcgcgggg cgactgcttc ggcgagtccg cgacttcgcc catgcttctg gttcccatgt
     1801 gatcgattgc agtcttgcgg atcgggcact ttcaagactg gagatcgatg gccttggcct
     1861 cgatgccatg gaccggcgct acttgatgat gatcgcggac ctttacggcg gtgggccggt
     1921 gggcgttgag acactcgcag cgggcctttc cgagccgcgc gacacgatcg aggaagtgat
     1981 tgaaccctat cttattcagc tcgggctcat tgcgcgaacg gcaagaggtc gatgcctcaa
     2041 tggtcgaggc tacgtccatc tgggtcttcc agtgcccgat gcaggtcagc caggtctgtt
     2101 cggtcaagga gcagcttcga aataatggtc cgcttgatcg tcgctgcgtt cctcagcgtc
     2161 gcggctggaa ccgcgctggc ggctgatccg gacgtacctc aagcgccggc accagactat
     2221 tcgatcgagt cgagctggct ctgtctgccc ggccgcgcgg atgtctgctc ggcaccgttg
     2281 ccgacaacta cgctcggtcc gaacggctat gggtccaaga tctcgggtgc gcgctccaat
     2341 gacccgccgc tcgattgctt ttacgtctat ccgacggttt cgcgtgatcc gggacttaat
     2401 agcgggctcg atgttgcgga cgcaaaggga gtgaccgccg tccagtttgc ccgtttttca
     2461 agcgtttgcc gcaccttcgt gccgatttac cgtcagatga ccgtaagcgc agtcgctgct
     2521 tattcggctg ggttcgacat cactcctgcc gcggagctgg cttatcggga cgtcgccgcg
     2581 gcgtgggcaa attatctctc gagccgaaac cacggccgcc cattcattct tgtcggtca
//
LOCUS       DASRBJ010000368         3584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_302290,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000368 DASRBJ010000000
VERSION     DASRBJ010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 3584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3584
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302290"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(119..889)
                     /locus_tag="VE968_10085"
     CDS             complement(119..889)
                     /locus_tag="VE968_10085"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HZU52209.1"
                     /translation="MMTDSPLAGRHALITGGGTGIGAATAKLLAAAGAKLSLLGRRIE
                     PLRTIAATCGGIAVSCDVTDPDQVRAAFDQARTANGPIELMVANAGIAQSAPFHKMKR
                     ESWNDVIGTNLTAAFDCAREAIADLLASESGRLVFVASVASLRGVPYAAHYAASKHGL
                     LGLMRSLAAEYAKTRLTVNAVCPGYVDTPMTDLSVARVSQITGRSEADARSAITSINA
                     SGRLVDPQAIANVIAMLCLPLSRDINGAAITIDGGTSA"
     gene            948..1628
                     /locus_tag="VE968_10090"
     CDS             948..1628
                     /locus_tag="VE968_10090"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HZU52210.1"
                     /translation="MKIGILETGRPPKPLAVDYGDYADMFERMLGDGFDVERYEVEAG
                     ELPSCSSGRDAYLITGSPAGVYEELPWIDPLMEFIRSSGDKKLVGICFGHQVMAQALG
                     GRVEKSTKGWGAGLHRYRVLRGEPWIDDADEIAIPASHQDQVVIQPPNTDVVAASDFT
                     PFAALQWTDRPAISFQFHPEFSPAFAKALIDQRYDRIPDPGAAIASLDAPNDSERVAG
                     WIRRFLRA"
     gene            1659..2771
                     /locus_tag="VE968_10095"
     CDS             1659..2771
                     /locus_tag="VE968_10095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007612981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004024 - alcohol dehydrogenase activity,
                     zinc-dependent [Evidence IEA];
                     GO_function: GO:0051903 - S-(hydroxymethyl)glutathione
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006113 - fermentation [Evidence IEA];
                     GO_process: GO:0009404 - toxin metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-(hydroxymethyl)glutathione dehydrogenase/class
                     III alcohol dehydrogenase"
                     /protein_id="HZU52211.1"
                     /translation="MKTRAAVAFAPKQPLEIVEVDLDGPKQGEVLVEIMATGICHTDA
                     YTLDGFDSEGIFPSILGHEGAGVVREIGAGVTSVRPGDHVIPLYTPECRQCKSCLSGK
                     TNLCTAIRATQGKGLMPDGTSRFSYRGETIYHYMGCSTFSNFTVLPEIAVARIREDAP
                     FDTSCYIGCGVTTGVGAVVKTAKVEPGSNVVVFGLGGIGLNVIQGARLVGANKIVGVD
                     INPAREEWGRKFGMTDFLNTSGMARDEIVGKVIEITDGGADYTFDATGNTEVMRTALE
                     CCHRGWGTSIIIGVAEAGKEIATRPFQLVTGRNWRGTAFGGAKGRTDVPRIVDWYMDG
                     RIAIDPMITHRLQLDEINRGFDLMHAGESIRSVVIY"
     gene            2786..3157
                     /locus_tag="VE968_10100"
     CDS             2786..3157
                     /locus_tag="VE968_10100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HZU52212.1"
                     /translation="MFSHVMVGSNDIERSRQFYDRLFEEEARKDDKGRLIYRRKGAVF
                     MVSRPINGEPATSANGGTIGFNFENPQEVDAWHERGVKAGGSPIEEPPGYRENAFGKL
                     YLAYLRDPDGNKLCGLFRPPH"
     gene            3157..>3584
                     /locus_tag="VE968_10105"
     CDS             3157..>3584
                     /locus_tag="VE968_10105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HZU52213.1"
                     /translation="MLEIVSENKSWGGRQLVVRHQSTATSTEMTFSMFLPPHTEQARR
                     APVLWYLSGLTCTSANVTEKGEYRASCADLGLAFVAPDTSPRGDDVPDANGYDFGKGA
                     GFYVDATQEPWSRNFRMWSYVTEELPALVAREFPVDLERQG"
BASE COUNT          722 a         1023 c         1132 g          707 t
ORIGIN      
        1 tcatagctct ggaacgtcag cgggttcttg cgctcgggac gattgagggt aacggtggca
       61 acgcagtcac ggaactccca gatgaagtgt ttcggctgat acgctgccgg gtcccaggtc
      121 atgcgctcgt tcctccatca atcgtgattg cagcgccatt gatatctcgg ctgagcggaa
      181 ggcacagcat ggcaatcacg ttggcaattg cctgtgggtc aacgagcctg ccactcgcgt
      241 tgatgcttgt gatggcggac cgcgcgtcgg cttcgctccg gcccgtgatt tgcgaaacgc
      301 gcgcgaccga caggtccgtc attggcgtat cgacgtagcc cgggcagacg gcattcacgg
      361 taagtctcgt tttcgcatac tcggccgcga gactgcgcat caggcccaaa agcccgtgtt
      421 tggaagcggc atagtgggcc gcgtaaggga cgccgcgcaa cgatgcgacg gaggcgacga
      481 acacgaggcg gccgctttcg ctcgccaaga ggtctgcgat tgcctcccgc gcgcaatcga
      541 aagccgcggt aaggttcgtg ccgatgacat cattccaact ctcgcgcttc attttgtgga
      601 acggtgcgct ctgagctatt cccgcattgg cgaccatcaa ttcgatcggc ccattagcag
      661 tgcgagcttg atcgaatgcc gctcgaacct ggtcgggatc ggtgacatcg caggataccg
      721 caatcccccc acaagttgca gcaatcgtcc gcaagggttc gatcctccgc ccgaggaggg
      781 acagcttcgc gccggcggcc gcaagaagtt tcgcagttgc ggcgccgatg ccggttccgc
      841 cacccgttat cagcgcgtga cgtcccgcaa gcggcgagtc tgtcatcatt ccacacccct
      901 cgactcctgc ttggcggaag cgctcgtagg tggcaaggcg ccgaagcatg aagattggca
      961 tcctcgaaac cggccgcccg cctaagccac tcgcggtcga ctatggcgat tatgccgaca
     1021 tgttcgaacg gatgctgggc gacggcttcg acgttgaacg ctatgaggtg gaagcaggcg
     1081 aattgccgag ttgttcgagc ggccgcgatg catacctcat cacaggatca ccggcgggag
     1141 tgtacgagga gctgccatgg atcgatccgc tcatggagtt cattcgctcg agcggtgata
     1201 aaaagctcgt cgggatatgc tttggccacc aggtaatggc gcaagcgcta ggtggtcgcg
     1261 tcgagaagtc gaccaagggc tggggtgccg gcttgcaccg ctaccgcgtc ttgcgcggcg
     1321 agccatggat tgacgacgcg gatgaaatcg cgatccccgc gtcgcaccaa gaccaggtcg
     1381 tcatccagcc acccaatacg gacgtggtcg cagcttccga tttcacgcct tttgctgcgc
     1441 tgcagtggac ggatcgaccg gcgatttcgt ttcagtttca cccggaattc tcgccggctt
     1501 ttgcaaaagc gctgatcgat caacggtacg accggattcc cgatcccggc gcagcgattg
     1561 catcacttga cgcgcccaat gacagtgagc gtgttgccgg ttggatacga cgcttcctca
     1621 gggcataggc gaaccacact gaatcggaga gcaataaaat gaagactcgt gcggccgttg
     1681 cctttgcgcc caagcagccg cttgagatcg tcgaagtcga tctcgacgga ccgaagcaag
     1741 gcgaagtact cgtcgagatt atggcgacgg gcatctgcca taccgatgcc tataccctcg
     1801 acggcttcga cagcgagggg atcttcccct cgatccttgg gcacgaaggc gcaggtgtcg
     1861 tgcgagagat cggtgcgggg gtcaccagcg tccggccggg cgaccatgtc attccgctgt
     1921 acacgcccga atgccgccaa tgtaagtcat gcctcagcgg caagaccaac ctgtgcaccg
     1981 ccattcgtgc cacgcaagga aagggcctga tgccggacgg gacgagccgg tttagttacc
     2041 gcggcgagac aatctaccat tatatgggct gctcgacttt ctccaacttc acggttctcc
     2101 ctgaaatcgc cgtcgcaagg atccgcgaag acgccccgtt cgacacgagc tgctacattg
     2161 ggtgcggcgt gacgaccggc gtcggtgccg ttgtcaagac cgctaaggtc gagccgggca
     2221 gcaacgttgt tgtattcggc cttggcggca tcggtctcaa tgtcattcag ggcgcaaggc
     2281 tggtcggcgc gaacaagatc gttggtgtgg acatcaaccc tgcgcgcgag gaatggggtc
     2341 gcaaattcgg gatgacggac ttcctgaaca caagcggcat ggctcgtgac gagatcgtcg
     2401 gcaaggtgat cgagattacc gacgggggcg ccgattacac gttcgatgcg actggaaata
     2461 cggaggtgat gcggactgct cttgaatgtt gtcatcgtgg ctggggcacg agcatcatca
     2521 ttggcgttgc cgaggcgggc aaggagattg cgacgcggcc gttccagctg gtgactggcc
     2581 gcaactggcg cggcacagct ttcggtggtg cgaaggggcg cacggacgtg ccgaggatcg
     2641 tcgattggta tatggatggg agaattgcga ttgatccgat gatcacgcac cgtctgcagc
     2701 tcgacgagat caatcgaggg ttcgacctca tgcacgcggg tgaaagcatt cgctcggtcg
     2761 tcatttatta ggagcgagga ggcccatgtt cagtcatgtg atggtcggtt cgaatgacat
     2821 cgagcgttcg cggcagttct acgaccgatt attcgaggag gaggccagaa aggacgacaa
     2881 ggggcgcctc atctatcggc gcaagggcgc cgtcttcatg gtgtcgcggc cgatcaatgg
     2941 agaaccggct acgagcgcca atggtgggac aatcgggttc aacttcgaaa acccacaaga
     3001 ggtcgacgcg tggcatgaac gcggcgtgaa agccggcgga tcgccgatcg aagagccgcc
     3061 cgggtatcgc gagaatgcgt tcggcaagct ctatcttgcc tatcttcgcg atccggacgg
     3121 caacaagctt tgcggtctct ttcggccgcc gcactaatgt tggaaattgt ttcggagaac
     3181 aagagctggg gcggtcgaca attggttgtt cggcaccaat cgaccgcgac gtcgacagaa
     3241 atgaccttct cgatgttcct gccgccgcac acggagcaag cgcggcgagc acccgtctta
     3301 tggtatcttt caggcctgac ttgcacgtct gcgaacgtga ccgagaaggg ggaatatcgc
     3361 gcaagctgtg ccgatctcgg ccttgccttt gtcgcacccg atacgagccc gcgcggggac
     3421 gacgtgcccg atgctaatgg ctacgatttt gggaagggtg ccggcttcta cgtcgacgcg
     3481 acgcaagagc cctggtccag aaacttccgg atgtggagct acgtcacgga agagcttcca
     3541 gcgcttgtcg cccgagagtt cccggtggat ctcgaacgcc aggg
//
LOCUS       DASRBJ010000369         2428 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_303348,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000369 DASRBJ010000000
VERSION     DASRBJ010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 2428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2428
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303348"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(43..807)
                     /locus_tag="VE968_10110"
     CDS             complement(43..807)
                     /locus_tag="VE968_10110"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004208808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HZU52214.1"
                     /translation="MSQNWPKRLWLVRHGQSQGNVARDAADESGAHEIDIDMRDVDVP
                     LSILGIEQAQAAGRWFAALPRDERPEIILSSPYVRAKQTAEIICKEGALAGGPARTII
                     DERLREREFGIFDRLTTAGIRHRFPEEAAHRRRLGKFYHRPPGGESWADVILRLRSML
                     NTINLHYCDRRVLVVCHQVVVLCFRYILEELDEAQILDIDKQAEILNCGIAAYDFELE
                     SKGVCVPELALWNHGAPLDADGAPKTSAPDAMAGTR"
     gene            complement(866..>2428)
                     /locus_tag="VE968_10115"
     CDS             complement(866..>2428)
                     /locus_tag="VE968_10115"
                     /inference="COORDINATES: protein motif:HMM:NF016228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar nucleotide-binding protein"
                     /protein_id="HZU52215.1"
                     /translation="YQAEHENQRRWLSLDLLTGRVTPDHGFYKRLCDAGASREALDRL
                     AAGLGAPDLIGINHYLTSERFLDHRINRYPRIEPGTNGIDRYVDLEAVRMSHLRHEVG
                     PAKRLREAWDRYQLPMVVSEVHHGCTREEQVRWLLDVWNAVERERSQGVDIRAVTLWA
                     MFGAVDWRSLLTRGDGCYDVGAFDTRSEEPRATLVAKAARRLGRGERFDHPVLDLPGW
                     WRRPGRCHGRPSYDTLPARRGSARPILITGATGTLGQAFARICAHRGLAYVLTSRAEL
                     DITAEDSIASAIARHRPWAVINAAGFVRTWEADSKLDECFSINAIGPELLGRACKSAG
                     IPLVTFSSDLVFDGKLGRPYAEVDTPAPVSAYGRSKAEAESRLLAIDADALIIRTSAF
                     FGPWDRYNFVFDTIKRLKRGEEVVASDRTYVSPTYVPDLVHATLDLLVDGETGIWHLT
                     NQGAISWHQLAKEAALTARLDRKLVRLVRAADEEEAVDTSLTSSRGLLLRPLDEALND
                     FVQYNEALQLLQ"
BASE COUNT          480 a          748 c          737 g          463 t
ORIGIN      
        1 ggggatgctc cgagaggacg gcgcggctta attcgaccag attcaccgcg tccccgccat
       61 tgcatcggga gcggacgtct taggcgcacc gtcggcgtcg agcggcgcgc cgtgattcca
      121 cagcgcgagt tcggggacac agacgccctt gctctcaagt tcaaagtcgt aagcggcgat
      181 cccacagttc aggatttccg cctgcttgtc gatgtctagg atttgagctt cgtcgagttc
      241 ctccaatatg tacctgaagc aaagcacgac cacttgatga cacacgacga gaacacgccg
      301 atcgcaataa tgaaggttga tcgtgttgag catggagcgg agccgaagga tcacgtctgc
      361 ccagctctcg cctcccggcg gccgatggta gaatttgccg aggcgtcgcc gatgcgccgc
      421 ctcttcgggg aagcgatgcc gaattccggc cgtcgttaat cgatcgaaaa tgccgaactc
      481 gcgctcgcgc aagcgctcat cgatgattgt gcgcgccggc ccacccgcga gtgcgccttc
      541 cttacagatg atctcagcgg tttgcttcgc ccggacgtag ggcgatgaga ggatgatttc
      601 gggtcgctca tcgcgcggga gagccgcgaa ccaacggccg gctgcctgcg cctgctcgat
      661 accgaggatt gagagcggca cgtcaacatc gcgcatgtcg atatcgatct cgtgcgcacc
      721 ggattcatcc gcagcatccc gggcgacatt cccctggctt tggccgtggc ggaccagcca
      781 cagtcgcttt ggccaattct gactcatcag ccgtccctct cctggatagg ctcaaagcat
      841 cagcaggaag attgtgccaa gggtgctact gcagaagttg cagggcttcg ttgtactgca
      901 cgaaatcgtt caatgcttca tcgagagggc gaagcagcag gccgcgactg ctggttagac
      961 tcgtatcgac tgcctcctcc tcatccgcag cacgcacgag cctgacgagc tttcgatcaa
     1021 gccgtgccgt cagggccgct tccttcgcca gctgatgcca acttatcgcg ccttggttcg
     1081 taaggtgcca gatgcctgtt tcgccgtcga cgagcaggtc gagcgtcgca tgaacgaggt
     1141 ccggcacgta ggtgggcgac acataggtcc ggtcgctagc cactacctcc tcgccgcgct
     1201 ttagccgctt aatcgtatcg aacacgaagt tgtaacggtc ccaagggccg aagaacgcgc
     1261 tcgtgcggat gatcaatgcg tcagcgtcga tcgcgagaag ccgtgactcc gcttccgcct
     1321 tgctccgccc ataggcggac acgggcgcgg gcgtatcgac ctcagcatag ggtcgaccga
     1381 gctttccgtc gaagacgaga tcggacgaga aagtcaccaa cggaattccc gcggatttgc
     1441 aggcgcgacc gagcaactcg ggcccgatgg cgttgatcga gaagcactcg tccaatttcg
     1501 aatctgcctc ccacgttcgc acaaaccccg cggcattgat gacggcccaa ggccggtggc
     1561 gcgcgattgc tgacgcgatc gaatcttcgg cggtgatgtc gagttcggcg cgagaagtga
     1621 gaacgtaggc aagcccgcga tgtgcgcaaa tccgcgcgaa agcctggccg agagtacccg
     1681 ttgcacccgt gataagaatt ggtcgcgcgc tgccacgacg cgcaggaaga gtgtcgtaac
     1741 ttggtcgacc atgacagcgc ccgggacgac gccaccagcc cggaaggtcg agaacagggt
     1801 ggtcgaagcg ctctcctcga ccgagccgac gggcggcttt cgcaacgagc gtagcgcgcg
     1861 gctcctccga acgggtgtcg aatgcgccga catcgtaaca gccgtcgccg cgggtgagca
     1921 gtgacctcca gtcgacagcg ccgaacatag cccacagcgt cactgcgcga atatcaactc
     1981 cttgcgaacg ctcacgctca acggcgttcc agacgtcgag aagccaacga acctgctcct
     2041 cgcgcgtgca tccatgatgc acttcggaaa cgaccattgg gagctggtag cgatcccagg
     2101 cttcccgtag gcgcttcgcg ggtcctacct cgtgtctgag atgcgacatc cgaactgctt
     2161 caagatcgac atatcggtcg atgccgttcg tgccgggttc gatccgtggg taccggttga
     2221 ttcggtggtc aaggaatcgc tcgctcgtga gataatggtt gatgccgatc aggtccggag
     2281 cgccaagtcc tgccgcgagg cgatcaagcg cttccctgct cgcgccggcg tcgcataacc
     2341 gcttgtagaa gccgtggtca ggtgtcacgc gtccggtcaa taagtcgagg ctcagccaac
     2401 gtcgctggtt ctcatgctcg gcctggta
//
LOCUS       DASRBJ010000370        10125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_657182,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000370 DASRBJ010000000
VERSION     DASRBJ010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 10125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10125
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_657182"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..974
                     /locus_tag="VE968_10120"
     CDS             <1..974
                     /locus_tag="VE968_10120"
                     /inference="COORDINATES: protein motif:HMM:NF033523.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Atxe2 family lasso peptide isopeptidase"
                     /protein_id="HZU52216.1"
                     /translation="SLDPGTLIRLDPESGKSTTLFELNPEFRSLTLAQVERLHWRSAN
                     GVETVGDLVLPVGYRPGTRYPLIVVQYDTRGFLRGGTDDEYPIQAFANRGYAVLSFSA
                     PHFPAEKLGAKNYEEAGHLDLEKFAGRRNIQSALEAGIQLLVKRGIADPKRLGITGLS
                     DGSSTVEWELNHGSLFAAAAMSSCCWDPGFIARVGPGAAQHFLAEGYPGILERNDAFW
                     KDMALELNARQISTPILVNASEEEFLGALETYTALREAGVPIDMFVYPDELHGRWQPA
                     HRLATYRRSLDWFDYWLLGIRSSARDRQPELKEWDRLKREAGHAHPI"
     gene            complement(922..2415)
                     /locus_tag="VE968_10125"
     CDS             complement(922..2415)
                     /locus_tag="VE968_10125"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HZU52217.1"
                     /translation="MRDPSGTFPCYYGRVRDVALFASDAELLELTGVSVEIDPEEVGR
                     QLYRAFVPSSATALRGISELLAGSSVSISDDFAIGPQEPCWSPWDYVNEPNVEREETA
                     ERLARIVRHCVAAWAVGRGRLLLSVSGGLDSSIIAACLARSAADTVCLTMFSEDPAGD
                     ERPFARALCSHLGIRLIERPYRLEDVDIAQALAPHLPRPRDRTQANAYERVHVDVAKD
                     VGADTFVTGNGGDNVFGYSQSAAPIADRFLAHGIDRQLFSSLRDVCEQTGCSIVDALR
                     HALRLVRCSPAHQVRPNTLFLAPDFVARLGSAELRHAWLEAPADALPGKAAHIATILR
                     VQPNIEASRGYHLPVLSPLLSQPIVETCLRVPSWEWRAGGRDRSLARRAFEDDLPAAL
                     INRRVKGTPSRFAARLLDHVRRRIRERLLGGRLASAGIIDALAVEQVLVGDRPVGDLE
                     RVRILELVNAEAWLDHWAARRKPAEAVETHIKSDGHDRPRASGDPIP"
     gene            complement(2727..3392)
                     /locus_tag="VE968_10130"
     CDS             complement(2727..3392)
                     /locus_tag="VE968_10130"
                     /inference="COORDINATES: protein motif:HMM:NF033537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lasso peptide biosynthesis B2 protein"
                     /protein_id="HZU52218.1"
                     /translation="MPLRLRDNLCWCNCDGRIVFLDIALDRYFCLGEEANLAFLRFAS
                     GTMDTGDAAKLEPLVARGVLIDALGPRLPNPPLIDSPEKDYLPEPLRRARLRSVVRAL
                     ASELRSAFMLRTMAFQKVIDRARQRPPHVCADLTMSNECVHEIVAGARAASFILRSHD
                     RCLVRALAVHRVCKSNGIRAKLVLGVIAHPFTAHCWVQLGSAVLVGGYEQARLYTPIL
                     VVE"
     gene            complement(3448..3579)
                     /locus_tag="VE968_10135"
     CDS             complement(3448..3579)
                     /locus_tag="VE968_10135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52219.1"
                     /translation="MNKNKSHEDLVELGCVSTETKGASVGMDDHQSGLYPQTGLGDE"
     gene            complement(3813..3944)
                     /locus_tag="VE968_10140"
     CDS             complement(3813..3944)
                     /locus_tag="VE968_10140"
                     /inference="COORDINATES: protein motif:HMM:NF033522.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="benenodin family lasso peptide"
                     /protein_id="HZU52220.1"
                     /translation="MNRERENEDLIELGAVTVETKGPTVGRDDNQAGLIPFAGISEE"
     gene            4704..5243
                     /locus_tag="VE968_10145"
     CDS             4704..5243
                     /locus_tag="VE968_10145"
                     /inference="COORDINATES: protein motif:HMM:NF038126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxDxF family PEP-CTERM protein"
                     /protein_id="HZU52221.1"
                     /translation="MRKLVLAATAAMALVGAATAANASSTLQQPTPNALTPPDSAFFG
                     ADVDSGPTSFDDTYTFSIAGSAGVTDAQVSTLLLNKSQNINFTSVVLDGTYSFSKTST
                     DPAPETWALLSPVLLDVGTHSIEVVGNLIGPTGSYSGTINVQAPVPEAKTWMMMLLGF
                     GGMGFALRRRQRPVLAQIA"
     gene            5530..5799
                     /locus_tag="VE968_10150"
     CDS             5530..5799
                     /locus_tag="VE968_10150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52222.1"
                     /translation="MMRTVLTAFAVLAFATSATAATKSAPTKAAATKSVQCRDTKGKF
                     IKCPAPVAKSVAKSSVAVAEKTTNTTKRCRDAKGKFAKCGTPGAK"
     gene            5952..6869
                     /locus_tag="VE968_10155"
     CDS             5952..6869
                     /locus_tag="VE968_10155"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HZU52223.1"
                     /translation="MFFLSPVRVGAATGEVALTFDDLPALTILPDQPYVDYLNATILR
                     KLRRHHVPAIGFVNESKIDDLVKAHQIANLEAWVKDGMELGNHSFSHQSLNDVGAHAY
                     IADIAKGEPVTNAILERHGKHLGYFRAPYLETGSTAATKDEVENWLTTHGYRMAPVTI
                     DADDWEFAEPYDDAIARKDPAQQQHIRAEYLAYSATRVAWAQASARALFGRDIRHVML
                     LHCTRLNADTLDDLLKILKRAGLRPVSLETALEDPVYRLPDTYVGKDGIDWLQRWAQA
                     RNVVLPEAGSEDPPSDIQADYDRVDNDRQ"
     gene            complement(6906..7325)
                     /locus_tag="VE968_10160"
     CDS             complement(6906..7325)
                     /locus_tag="VE968_10160"
                     /inference="COORDINATES: protein motif:HMM:NF024822.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4112 domain-containing protein"
                     /protein_id="HZU52224.1"
                     /translation="MVARSIPTEGLFEFIKSTAPSSDAALQRLQTVANLLDSAFVIPG
                     TKQRVGIDALIGLIPGLGDIATTLLSSYIVWEARNLGVSKFALGRMLTNLAIHASVGS
                     IPLVGDIFDAFFRVNQRNMRILRNQLERKQRNSLAAA"
     gene            complement(7558..7791)
                     /locus_tag="VE968_10165"
     CDS             complement(7558..7791)
                     /locus_tag="VE968_10165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007688142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52225.1"
                     /translation="MDGKIHDEPSSVASDHGTVVVDGPDAVAVTLTPDAAEETGERLI
                     SSAIEAAAYRHRDEAATKRDASASDELSNEASK"
     gene            complement(7842..8546)
                     /locus_tag="VE968_10170"
     CDS             complement(7842..8546)
                     /locus_tag="VE968_10170"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HZU52226.1"
                     /translation="MVNTAAVARIGSLLGDPARANMMIALLDGHEWMASELAMVAGIS
                     AQTASTHLAKLTDANMITVEKRGRERYHRLSSSDVARLVEQMHVIGAAIPARSPNAGP
                     RDGALRELRSCYDHLAGRIAVDVSARLIEDASAETTRLKPEAFPLLERLGIEFDKLAQ
                     GRRVVCRTCLDWSEKKPHMAGALGAALLERFDALSWVKRQASTRALVLTATGERGLSD
                     VFGVSSVRTGARQRQH"
     gene            8888..>10125
                     /locus_tag="VE968_10175"
     CDS             8888..>10125
                     /locus_tag="VE968_10175"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HZU52227.1"
                     /translation="MNSVYRSQLSSLWLALPLCLCSCVVGPNFKPPAAPSVSSYTPEP
                     AATTVATAGVHGGEGQRFIRGADIPAEWWTLFRSQELDSLIKEALAHNADLKAAEAAL
                     LVAHENTLAQHGAYAPKVSAGLSVTREKDPSGTLAPVPSNNAFLYTLITPQLSVAYTP
                     DVFGLTKRTVESAAAQEQASRYQMIAVDITLSANVAAAVIQEASLNDQIATTNALIGI
                     DREMLSLLKYQQAKGYAAGPDVAAQEAQLEQLEASLPPLIKQREQQEHLIGVLTGRFP
                     SQVPQQTLTLASLTLPADLPLSLPSALVEQRPDVLQAEANMHSASAQIGVATANRLPN
                     ITLSANAGSNALAISQVFGPGTGFWNIGAALLAPIFDGGTLLHQQRGARAAYRQAAEQ
                     YRGTVLTAFQNVADTLSALE"
BASE COUNT         2149 a         3097 c         2921 g         1958 t
ORIGIN      
        1 catcgcttga tcccggcacg ctcatccgac ttgatcctga aagtggcaaa agcacgacct
       61 tgttcgagct aaaccccgag tttcggagcc ttaccctcgc acaggttgag cggctgcact
      121 ggcgaagcgc gaatggtgta gagaccgtcg gcgatctcgt cctgcccgtc ggctatagac
      181 cgggaacgag atacccgctg atcgtcgtcc aatatgatac gcgcggattt ctccgtggtg
      241 gcactgacga tgaataccca atccaggctt tcgctaatcg cggctatgcg gtgctaagct
      301 ttagcgcgcc gcactttccc gccgaaaagc ttggcgccaa gaattacgaa gaggctggcc
      361 acctcgatct tgagaagttc gcgggccgcc gcaacatcca gtctgcgctc gaagccggca
      421 ttcaactcct cgttaagcga gggattgccg atccaaagcg cctcggcatc acgggtctca
      481 gcgatgggtc gagtaccgtc gagtgggaac tcaatcacgg ctccctattc gcggcagccg
      541 caatgagcag ctgttgttgg gacccgggct ttatcgcgcg cgtcggacca ggcgctgcgc
      601 agcacttcct tgcggaaggc tacccgggaa tactcgagcg caatgacgcg ttctggaagg
      661 acatggcgct tgagctaaac gcccgccaaa tttcaacacc gatcctcgtc aatgcgtcgg
      721 aggaggaatt tctcggggcg ctcgagacct ataccgctct tcgcgaggcc ggcgtcccca
      781 tcgacatgtt cgtctatcca gacgaattgc atggacgatg gcaacccgcg catcggctgg
      841 ctacctaccg acgatccctt gactggttcg attattggct gcttggaatt cgctcgagcg
      901 cacgcgaccg gcaaccagaa ctcaaggaat gggatcgcct gaagcgcgag gccggtcatg
      961 cccatccgat ttgatgtgcg tttcaaccgc ttcggcaggc tttcggcgag cagcccagtg
     1021 atccaaccag gcttcggcgt tgaccaattc gagaatacga acgcgctcga gatctccgac
     1081 cggtcggtcg ccgacaagca cctgctcaac ggcgagcgca tcgatgatcc ccgccgaagc
     1141 cagtcgtccg ccaagcaacc gctcacggat gcgacgccga acgtgatcga gcaggcgcgc
     1201 cgcaaaccgg ctcggtgtcc ccttcacccg ccggttgatg agagccgcag gtagatcgtc
     1261 ttcaaaagcg cgccgagcca acgaacgatc gcgacctccg gcccgccatt cccagcttgg
     1321 aactcgaagg cacgtttcca cgataggctg cgacagcaat ggactgagaa caggcagatg
     1381 ataacctcgg ctcgcttcga tattcggctg tacccgaagt atcgttgcga tgtgcgccgc
     1441 tttcccgggg agcgcatcgg caggtgcctc gagccacgca tgtcggagct cggcgctgcc
     1501 aagtcgcgcg acaaagtcag gagcaagaaa aagagtgttg gggcggacct gatgcgctgg
     1561 tgagcagcgc accagacgca acgcgtggcg cagcgcgtcg actatgctgc aaccagtctg
     1621 ctcgcagacg tcgcgcaatg agctgaacag ttgccggtca attccgtgcg cgaggaaccg
     1681 gtcagcaatc ggcgcagcgg actgcgaata gccaaataca ttatcgccgc cattcccggt
     1741 cacgaacgtg tccgcaccga cgtccttcgc gacatccaca tggacgcgct cgtacgcgtt
     1801 cgcctgggtt cggtcccgag gccgcggcag atggggcgct aacgcttgcg cgatgtcgac
     1861 atcctcgagc cggtagggac gttcgatcaa tctgatacct agatgcgagc agagcgcgcg
     1921 agcaaaggga cgctcgtcac cagccggatc ctcggagaac atcgtgaggc aaaccgtgtc
     1981 cgccgcggat cttgcaagac atgcggcgat gattgacgaa tcgagtcctc cggaaacgct
     2041 gaggagcagc cgacctcgcc ccacggccca tgcagcaacg caatgccgga caattcgcgc
     2101 gaggcgctcg gcggtttcct cgcgctccac gttcggctcg ttgacgtagt cccagggcga
     2161 ccagcacggc tcctggggcc caatcgcgaa atcatccgaa atactgaccg aagaccccgc
     2221 cagcaattcg ctgatccccc ggagcgcggt tgctgacgac ggtacgaacg cgcgatagag
     2281 ctgacggcct acttcttcgg gatcaatctc gacggaaaca ccggtcagct cgagtagctc
     2341 tgcatcggac gcgaagagcg ccacatcacg gacacgcccg tagtagcacg ggaaggttcc
     2401 ggaggggtcg cgcatgactc tcgtcgaacg gccattcgta gctatcgcga tatatccgcc
     2461 ccaaaaccgc tccagatatc gatcattcga ggtcaggtcg gagacttcgg agacactcag
     2521 cgcgtcaaca ggccttgaag gtccgtgtcg gtgaaagacg gtgccaagga tgcagccggt
     2581 ctcaccgact gacatgcacc ggagccgagt gcccagcacg aggactcgat cactcgagaa
     2641 aagcatgtcc aagccgaaac tagaaagttg cgccagcaca tccaagcttc gcgggcgatc
     2701 ggcaatcgca agaagataac gctggctcat tcgacgacga gtatgggtgt atagagccgc
     2761 gcctgctcat aaccgccgac cagaacggcg cttccgagtt gcacccaaca atgcgcggtg
     2821 aacggatgcg caatcacgcc aaggacaagt ttcgctctga tgccgttgct tttgcagacg
     2881 cggtggacag caagagcgcg gacaaggcac cggtcatggc tccgcaggat gaacgaggcc
     2941 gctcgagcgc ccgcgacgat ttcgtgaacg cattcgttgc tcattgtcag atctgcacac
     3001 acgtgcggcg gacgctggcg agcacggtcg atgacctttt gaaaggccat ggtgcgaagc
     3061 atgaaggccg aacggagttc agaagccagc gctcgcacaa ccgagcgcaa ccgtgctcgg
     3121 cgaagtggct cgggcaggta atccttctcc ggagaatcga ttaatggcgg gttgggcaaa
     3181 cgcggaccga gcgcgtcgat aagcacgcca cgtgcgacca gcggctcgag cttcgcggcg
     3241 tcgccagtgt ccattgttcc agaagcgaac cgcaggaacg caagattagc ttcttcaccg
     3301 aggcagaaat agcgatcgag ggcgatgtcg agaaagacga tgcgcccgtc gcaattgcac
     3361 cagcaaagat tgtcgcgaag ccgaagaggc atgactgggt cgctggacaa gcgtgcgccc
     3421 gattggagcg ggcgcacgcg tctaacgtca ctcgtcgccg agaccggtct gcgggtagag
     3481 gccggactga tgatcgtcca tgccgaccga agcacccttg gtctccgtgc tcacgcaacc
     3541 gagctccaca aggtcttcat gtgacttatt cttgttcatc gctgcttctc ctttgccacg
     3601 catgttgccg tggtcgcaga agagtgcggc gacgagcgca ctataagaaa cttataagct
     3661 ttccgtagtg cgaatgttcg atcggggtcc tgcaagaagc gccctctttg gatgctctcg
     3721 cggcgggacg cgcgcaaagc tcggaagcca aaaattgtct ttggtgctga agcgtgcgcc
     3781 cgcgatgaag acgggcgcac gcgttcttca tgttactctt cgctgattcc tgcaaaaggg
     3841 atgagcccgg cctggttgtc gtctcgtccg acggtcggcc ccttcgtctc gacagtgacg
     3901 gcgccgagtt caatcaggtc ttcattctca cgttcacggt tcatgacttt ctccttcttt
     3961 ttacgtcacg gccatgacgg aggagaagta cgagttcttc gatcacatcc aaaatctatt
     4021 cggacggagt aacttgaatg tacgattgcg aagcccgctc ggggatcaga gagtgatcgc
     4081 tgcgcgagcg agaaatgcgc gcgtgtccag tgcttttacc gggtgcgtac caacgcggga
     4141 caggcagcac ctagcctctg gacgtgagcg cgaaatccgc ctttcgcctc gcgtcgctcg
     4201 tgggggagcg tttttgcaaa ctcacaggga atccgccgtg actcgttgta actcagactc
     4261 ttgcgagcgt tccgcgcaag cgcaaaaggc gctcgcctat cttgagcgcg cactcgaaat
     4321 catcgactcc ttgaattctg cttcggtgac tggagcaagg attcagcacg caatcgacac
     4381 actgaaggac gaattctaag ctcattttct aattgagcag cgaaatagtc accgacctct
     4441 gcgtgctgct ctggcgaatg cgtacgcgct tcacgggcac accgaagcgt cgctttacac
     4501 gggttcgacg tgctttgccg accgcgcaag tttgctgtcg tgagtcatcc ctttcaggtc
     4561 ggtgaccagc tcgtttcgtc aatgcgcccc aagcacctct aaaaggtctg ttccgttgcg
     4621 gcacacctcg ggtccggcgc ctttcgatgc aagaaggagc tccctaacgt tcgatcactg
     4681 tcgaaagtta agaggaggta agcatgcgta aactggtact cgcagccact gctgcaatgg
     4741 cgcttgtagg tgcagcgacc gctgcgaatg cgagcagcac gcttcagcag ccgacgccca
     4801 acgctctcac gccgcccgac tccgcattct ttggagcgga cgtcgactcg ggtccaacct
     4861 ccttcgacga tacatacacg ttcagcattg ccggcagcgc tggcgtgacg gatgcgcagg
     4921 tcagcacctt attgttgaac aagtcgcaga acatcaattt caccagcgtc gtcctcgatg
     4981 gtacttactc attttcgaag acctcgaccg atccagctcc cgaaacatgg gcgcttctaa
     5041 gtccagtcct gctcgacgtc ggaacgcact cgatcgaggt tgtcggcaac cttatcggcc
     5101 cgacgggctc atattccggc acgatcaacg tccaggcgcc cgttcccgaa gcgaaaacct
     5161 ggatgatgat gcttctcggg ttcggcggca tgggctttgc tctgcgtcgc cgccagagac
     5221 cagttctcgc ccagatcgcc taaaagcccc cccgacctcc tgagaccggc ccctgacctg
     5281 ttcaggggcc ggatttttca tgccgcaagc ggaaggcgat tgatggcaac gctgcggctg
     5341 aatgcactcg tcctggccgg tgcgcaccgg acgatccttt gccaggcaat cgcgagtggg
     5401 taagaagcgt cggcggatgc agctgaacaa taagtagcgt tgcgatgaat agctcgtgag
     5461 caacgcaact gttgttggag atgtgccgtt cagacagtgc ccgaagaggc atcaacagga
     5521 gaggaagaca tgatgcggac agttctaact gccttcgccg ttctcgcgtt tgcaacgagc
     5581 gcgacggcgg cgacgaaatc ggctccaacg aaagctgccg cgacgaagtc ggttcaatgc
     5641 cgggatacca aaggcaagtt catcaagtgc cctgcgccgg ttgcgaagtc cgtcgcgaaa
     5701 tcctccgtgg ccgttgctga gaaaacgacg aacacaacga agcgctgccg tgacgccaag
     5761 ggcaagtttg ccaagtgcgg aacaccgggg gcgaagtaag acctcagcta ctggagcgcg
     5821 gcgcgtgccg gtttgccgcc cgcgctccaa tctcgaagca accgcgacgc accgactgtg
     5881 ttacttgatg gacgatggtc agcgtatatc aaagcctcgg cgggaggctc ctttgttgct
     5941 tcttcctact aatgttcttt ctgagccccg tccgggtggg cgctgccacc ggcgaggtcg
     6001 cccttacctt tgacgaccta ccggcactga cgatccttcc tgaccaaccg tacgtcgatt
     6061 atttgaatgc tacgatcctg cgcaagcttc ggcgccatca cgtgcccgcg attgggttcg
     6121 tcaacgaaag caagatcgat gacctcgtga aagcgcatca gattgccaac ctagaggcgt
     6181 gggtgaagga cggcatggag cttggcaacc acagcttttc gcaccaatcg ctcaatgatg
     6241 ttggggcgca cgcctatatt gccgacatcg ccaagggcga accggtcacc aatgccattc
     6301 tcgaaaggca tggcaaacac ctcggctact ttcgtgctcc ctatcttgaa acgggaagta
     6361 ctgccgcaac gaaggacgaa gtcgaaaact ggcttacaac gcacgggtac cggatggcac
     6421 cagttacgat cgatgccgac gattgggagt ttgccgaacc ctatgatgat gccattgctc
     6481 gaaaggatcc ggctcagcag cagcacatca gggcagaata tctcgcctac tcggcaacgc
     6541 gcgtcgcctg ggcccaggcg agcgctcgcg ctctgttcgg gcgcgacatc cggcatgtga
     6601 tgctgcttca ctgcacacgc ctcaatgccg acacgctcga cgacctgttg aagattctca
     6661 agagagcggg gctgaggccg gtcagcctcg agaccgctct cgaagatccc gtctatcgct
     6721 tgcccgatac ctacgtcgga aaggacggca tcgactggct tcagcgctgg gcacaagcga
     6781 ggaatgtcgt cctgccggaa gctggcagtg aagacccgcc ttcagatatc caggcggact
     6841 acgatcgcgt cgacaatgac cggcaataag atcgaacgag caaagatcgc gtcgagctat
     6901 cctgatcaag ccgcggcgag actattcctc tgctttcgct cgagctgatt gcgaaggatc
     6961 cgcatgttgc gttggttcac gcggaagaac gcatcaaaga tatctccaac cagcgggatc
     7021 gagccgaccg atgcatgtat tgcgaggttc gttagcattc gcccaagcgc gaacttcgag
     7081 acgccgagat tgcgcgcctc ccacacgata tagctcgaca gaagggtcgt cgcgatgtcg
     7141 ccaagaccgg ggatgagccc gatcagcgca tcgatgccga cgcgctgctt cgtaccggga
     7201 atgacaaagg cggaatcgag gagatttgcc accgtctgga gccgctgaag tgcagcgtcg
     7261 gacgagggtg ccgttgactt gatgaactcg aacagaccct cggttggaat agagcgcgcg
     7321 accacaacaa ctctcctcag aatctcaata acttaggtta gatggagagt gatgcgcgtc
     7381 attcaagtcc cgtactagaa tgaactagtg ctacgcgttc gcgaacgaat ttggacatcc
     7441 gaacggttac cctgtgtgaa ccaagctcgc gcgcgtccgc gctgcgcacc atccttatga
     7501 caaccgaaaa gacgctcgaa ccaacgcgtc ggaacgacga acgagtgaac cgacctgcta
     7561 tttcgaagcc tcgtttgaaa gctcgtccga ggccgacgca tcgcgcttgg tcgccgcctc
     7621 gtcacggtgc ctgtaagcag ccgcctcaat cgcgctgctg atcaggcgct cgcctgtttc
     7681 ttcggcagca tcgggcgtta gagttaccgc aacagcatcg gggccatcga ctacgaccgt
     7741 cccatggtcc gacgcgaccg agcttggctc gtcatgaatt ttgccatcca tgcgccgcga
     7801 aacgatcgaa cttgagtgcc gttgcgttct ttttgcatag gtcagtgttg gcgctgcctt
     7861 gctcccgttc gaaccgatga aacaccgaag acgtcagaaa ggccacgttc tcccgtcgcg
     7921 gtaagcacta gcgctctggt cgacgcttgt cgcttcaccc aggaaagtgc atcgaacctc
     7981 tcgaggagcg ctgctccgag tgcgccggcc atgtgcggct tcttctcgct ccagtcgaga
     8041 caggttcggc aaacaactcg ccgaccttga gcgagcttgt cgaactcaat cccgagcctc
     8101 tccaaaagcg gaaacgcctc gggcttcagc cgggtcgtct cggctgatgc gtcttcgatc
     8161 aagcgtgcgc tcacatcgac ggcgatccgc ccggcaagat gatcatagca ggagcgaagt
     8221 tcgcgcaagg cgccgtcccg cggccctgcg ttcggtgagc gagctgggat ggcagcgccg
     8281 atgacgtgca tctgctcgac gagtcgtgca acgtcgctcg aactcaggcg atgatagcgt
     8341 tcgcgcccgc gcttctcgac ggtaatcatg ttcgcgtcgg taagctttgc aaggtgcgtg
     8401 ctcgcggttt gcgcactaat tccggccacc atggcgagct cacttgccat ccattcgtgg
     8461 ccgtcgagca gtgcgatcat catgtttgcg cgcgccggat caccaagcag cgatccaatg
     8521 cgcgcaacag cggctgtgtt gaccattttc caaactccct cggattttac tgaaacacga
     8581 tcacgctcgc cgatgcttcg atcagcgtcg aagcaatgtg cgcttcagca aggtcaacct
     8641 cctagcattg cgtcttttgc accgccgcga ccacttacct aactttcgtc aatcgcgcgt
     8701 tcagcactac cctgctccag taaccgcgcc ccggagacca cgaggtaact tatcattaat
     8761 tcgatgtaat ttgcctcgag gaacttttcc ttggaagccg cgcccggtta ggtcagtaat
     8821 gtgatattgt ctctcttttc atcgaacggc ctgcggaacc gtcgcggcgg cagctcgcgc
     8881 acggagcgtg aatagcgtgt atcgatccca gctttcgtcg ctgtggcttg cgctgcccct
     8941 gtgcctttgt agctgcgttg tcggtccaaa cttcaagccg ccagcggcgc cttcggtttc
     9001 gagctatacg ccggagccag cggcaaccac agtcgcaacg gccggcgtgc acggcggcga
     9061 agggcaacgc ttcattcgtg gtgccgacat tccagccgag tggtggacgc tctttcgctc
     9121 ccaggaactg gattcgctca tcaaagaagc gcttgcgcac aacgctgact tgaaggctgc
     9181 cgaagcggca ttgctcgttg cgcacgagaa tacgctcgca cagcatggcg cttatgcgcc
     9241 caaggtcagc gccgggctga gtgtcacacg tgagaaggac ccgtccggaa ctcttgcgcc
     9301 ggtcccgagc aacaacgcat tcctctatac cctgatcact ccccagctca gcgttgccta
     9361 tacgccggac gtgttcggat tgacaaagcg aactgttgaa tcggccgctg cccaggaaca
     9421 ggcgagccgc taccagatga tcgcggtcga catcacgctc agcgcgaacg tcgcggccgc
     9481 cgtcatccag gaagcatcgc tcaatgatca gatcgcgacc accaatgccc taatcgggat
     9541 cgatcgcgag atgctgagcc tcctcaaata tcaacaagca aagggctatg cggcgggtcc
     9601 tgacgttgca gcgcaggaag cacagctcga gcaactcgag gcaagtctgc ctcccctcat
     9661 caagcagcgc gagcagcagg agcatctgat cggcgtcttg actggccgtt tcccttcgca
     9721 ggtgccgcag cagacattga cgctcgcgag cctgacgctt cctgccgatc tcccactgag
     9781 cctgccatcg gcgctcgtcg agcagcgacc cgatgttctc caggcggagg cgaacatgca
     9841 ctcggcaagc gcgcaaatcg gcgttgccac ggccaaccgc ctccccaata taaccctgag
     9901 cgcgaacgcc gggagcaacg cgctcgcgat cagccaggtg tttgggccgg gcaccggctt
     9961 ttggaacatc ggcgccgcac tcctcgcccc cattttcgat ggaggaacgc tccttcacca
    10021 gcagcgtggc gcacgcgccg cctaccggca ggcagccgag caatataggg gaacggtcct
    10081 cacggcattt cagaatgtcg ccgacacgct ttctgcgctc gagca
//
LOCUS       DASRBJ010000371        14199 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_303564,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000371 DASRBJ010000000
VERSION     DASRBJ010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 14199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14199
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303564"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1109)
                     /locus_tag="VE968_10180"
     CDS             complement(<1..1109)
                     /locus_tag="VE968_10180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HZU52228.1"
                     /translation="MRLWSSAFLAIMVAGVAAAAPVLAPPPAQLGADVATYVHIPAGE
                     IAITHLRIIDGTGAAPLENATLLIDQARIGAVLPAGAEVPSGYRIIDGTGETALPGIV
                     GMHDHMFYIARPNLDASGHAEDPLDVPQMTFSAPRLYLASGVTTMRTTGSVEPYTDLN
                     VKAAIDSGKLIGPHMDVTGPYLEGEGSPFIQMHPLRDADDARRTVAFWAEQGATSFKA
                     YMNITRAELKAAIDEAHRHGLKITGHLCSVTYPEAASLGIDDLEHGFFVNTELDPGKQ
                     PDVCPPTVGTPTLVAMKPGSPQANALIGLLVRRHVAVTSTLPVFEQSLALHAPLQPRA
                     MAVLTPQAREDYLYLRNLAATRGSSPRGQAFAEAY"
     gene            complement(1181..1921)
                     /locus_tag="VE968_10185"
     CDS             complement(1181..1921)
                     /locus_tag="VE968_10185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52229.1"
                     /translation="MASKAEPAKVPVRGRGFMADQAFFARYSIFIATFIIASFAQFSL
                     RGLVDIRAVPPIVHAHAAIMVSWLALFVIQNQLVHRGELAIHRKLGWLSAAVVAAVAV
                     LGCAVGYEALRQHMVPPFFTSSYFLALTAIEASVFAFVVGWAVALRRRTEWHRRMMFA
                     ATFLLLEPALGRLLPMPLLGGYGEWVALVVQLGFVARLAMHDRKVLGSMHPATFCAAA
                     ILVAVHCAVSLVATLPPVISIASAIAGA"
     gene            complement(2320..2484)
                     /locus_tag="VE968_10190"
     CDS             complement(2320..2484)
                     /locus_tag="VE968_10190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52230.1"
                     /translation="MKIATSEFIHGTPETTATTIMPLDMSIEGIIARRTEAPPSVRPG
                     MVTMPRRKIA"
     gene            3094..4176
                     /locus_tag="VE968_10195"
     CDS             3094..4176
                     /locus_tag="VE968_10195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HZU52231.1"
                     /translation="MASLELRGVRKAYGATPVLDNVSLTLEQREFIAFLGPSGSGKST
                     LLRIIAGLESADAGEIWLEGKRIDNLPPGERSIAMVFQHYALYPHMSVRQNMAFGLKN
                     ARVPRDEIDRRIADAAAVLEITPLLDRKPAQMSGGQRQRVAIGRALVKEPKLFLLDEP
                     LSNLDAALRLRTRVELAQLKQKVDAAVIMVTHDQAEAMTLADRIIVMNDRRIQQVGPP
                     MEIYSQPANIFVAQFVGSPAMSLLPATIDGGDYARLKLGDGSTVETRVPATSLPNGEL
                     RVGVRPEAVTVVDGPGTTKGKVDLVERLGERTLVYAKLADGQPITAEDDAFSRVKIGD
                     EVSLKIEGNAAHVFGPDGTGYHGAAA"
     gene            4173..5051
                     /locus_tag="VE968_10200"
     CDS             4173..5051
                     /locus_tag="VE968_10200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HZU52232.1"
                     /translation="MTVERDWRGILFVAPFVLLYSLILIFPLLRGLWLSLNQVDLFGA
                     GHFVGFGNYDALFHDPIFGASLVNTFEVTLMIVPALTVIALLLALSLNSAGKGAALLR
                     GIFFASAVLSVTIVTLVWRFMLAPDAGLLGAIWKAFGWEPVPFLSDVHLVLPALAITT
                     IWWSVGFPMLLFLAGLQQIPEDMYEAAALDNASRWTTFWKITLPSLRRTTILVVMLQT
                     AAQLQLFGQSQLLTAGGPSGASRTAVLFLFESAFGRWELGYASAAAELLFVIILAVTL
                     TQYWATGRASDASHGE"
     gene            5041..5877
                     /locus_tag="VE968_10205"
     CDS             5041..5877
                     /locus_tag="VE968_10205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HZU52233.1"
                     /translation="MASRVERGRLTPLGWGALLLGALVMIVPLAWTLLLSLKHNAELV
                     GHSEAALHPPYTLENYGAIFGNSMTLRWLLNSAIVAFGQTAGVLILSSLAGYAFARLD
                     FPLKRTLFVIVLLGLAVPSQAVILPQHELFAWLHLHNSYPGLILPGLVAPFGVFFMTT
                     YMRGIPKELDEAALLDGASRWTIFSKIIVPLTLPAQSTLAVFTFLGAWNDYWWPLISA
                     TRSDMYTLTVGLAAAQMNYAQTSGLGYLMAQAVFASIPIFIVYIVFQKQIVRAMAGAA
                     VR"
     gene            5874..7184
                     /locus_tag="VE968_10210"
     CDS             5874..7184
                     /locus_tag="VE968_10210"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HZU52234.1"
                     /translation="MRRAAQALLLAILLLGSCARPDHRTHLYLQRFFGECGAEYGGST
                     DIAKAEGECGIITTMIDRFNAENPDIHIDVNVVAWPGYPQLTAQVAARDPPDLVTMHE
                     GVISDYALKGLVEPVDDYLQKAGIKPTDFTDAARAGVTINGHEYALPWDTHGGLFHVN
                     TALFAKAGLMRDGKPILPNSPQELIAEARQFEQRTGKPYLIQSNVGDPAGAARNLYTY
                     MMAQGAVLFPDAHHIRLDTPVGIEVASFFKFINTQRLGTLNMDTPAAIAAFVNGEGGI
                     YPTGTWMIGSFQQEATTPGRPLYKSYAVYPYPHLWGQWVEYVSGHTWVVPTRKRSPEQ
                     REAIARFFRFMAAHNYDWARTGHIPAFKAVLDDPRFKSLPHRADIAPLAKIGRPLPSY
                     VQRQNAIEGLVGEEAAAAFTGQKTIQAALASAQRRVNDMLAQVE"
     gene            7306..10299
                     /locus_tag="VE968_10215"
     CDS             7306..10299
                     /locus_tag="VE968_10215"
                     /inference="COORDINATES: protein motif:HMM:TIGR01782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HZU52235.1"
                     /translation="MRHASTLFVSTSVLVAISLASPALAQNAPPPPPPDQTSGGTEPT
                     VSNQTNASTDTAAADQTIVVTGLRRSLQSSRNIRRNSEQIVDSVVAEDIGKLPDLNTA
                     ETAGRIPGVQIFRQGGEAQNVLVRGLPNFTTTYNGREIFTAETRVVALQDFPSSNIAA
                     LEVYKTSTADLVEPGLAGLINVRSRQPFDFDGTTVAGSVWGLYTRQGRSLTPNFNVLG
                     TTRWMTGAGEMGLLINAAYEKMRYLDRESSNTDYVNTFGIGPNGALTGTDPATAPPGG
                     QIIRMPDIQRLYYRSGSRERPSANVAFQWRPDPGVLVYAEGLYQGFRNQIDDHFLEVP
                     LYGGSSYTNLTFRNGNLVNSGTIVGMPGGVWGWQGATYNRTNTFQGAVGTKIDKGPIK
                     FNFDLARTWSTFLGSTESVDRRWEGTPTINFNTSEPGFTISGINLDDPTQQTFQGLFE
                     ENQRSAGRDWQARADFEYDFNSPFFKNVQAGFRYDQHNAVRNYANRYSYLLNLGIPAS
                     ALPVDNEVFHGLDVGNGSTYNWVAPTYISVRQGVVQFRDFIAAQCPRILPTDPGNGCT
                     SYVATNGGPIPAALLWTGHEHSIAGYAQLHVGNDNIDGSVGGRWLHVNTHVAGPVPTG
                     IPQLDEPSKHSVFLPDANVRARLNEAVQLRASVSKTETLPDFSQLVPSIVFASPPSGG
                     IGTPSSPWGASGGNPFLKPFTSWNFDAAVEYYFSRAGFVSLTGFHHKVNGFIQTNTFE
                     FTDATHGVVEVTAPENTGKGHISGLELQGQTFFDFGFLPDWVRGFGVQANATYITDKV
                     QQPNGTSTNGIPNLSYYPITDPYNGVSRWNYNLVLMYEHYGLSGRLSYNYRSRYDVER
                     QFRGNDVFSEYAKPGGWLDLSLNYNINDHWVLFGDWTNILRNKFRQYEQSARSVAGVT
                     PPQATFINLLRYNESTMSLGVRFNFSGRKAALPAPVAAPPPPPPPPPPPPATQTCADG
                     SVIPAGSTCPAPPPPPPPPPAPERG"
     gene            complement(10353..11390)
                     /locus_tag="VE968_10220"
     CDS             complement(10353..11390)
                     /locus_tag="VE968_10220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HZU52236.1"
                     /translation="MRFFHALVWVALAIAPSTTSAAEPSFEPVFRENFPDAFVLPYGS
                     QFIAYSTNAGPNVPMASSRDLVHWSFVIDPATGQKRDALPQLGPWAKPGFTWAPEVIA
                     AGGHWLLYYTASDRKHNAQCIGVAIARDPEGPFRDTATAPLICQTKLGGTIDASPFRD
                     ADGNLYLYFKNDGNRVHEATALWGQRLTEDGLSTVGDPVPLIGDRERWKDGVIEAPTM
                     VRSPTGYALFYSGGFFGWNVEEGGLSPYSMGYARCSGPLGPCRDSPDNPILHSFHDKQ
                     AGCLSGPGHQSVFSVGTRMFISFHAWEASRYCRKEGDERQLYIAPLYWKDGKPVIGPS
                     LREDSARTERG"
     gene            11474..12532
                     /locus_tag="VE968_10225"
     CDS             11474..12532
                     /locus_tag="VE968_10225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HZU52237.1"
                     /translation="MTWKALACATAILFACGMAHGAHKPLARETYINPVINADFPDPD
                     VLIAPDGTYYAYATQTMKAHQWINLQVARSRDLVHWHFLGDALPVKPAWAAKTQDFWA
                     PDVVREGDRYIMYYSAKPDVALTDTKQGMCLGVATASVPAGPFIDIGHPLQCGEGFVN
                     IDPTEFDDPTTGKHLLYWGSGFEPIKVRELGSDLVSFAPQSEQLDLVAPNPVKGAFPV
                     LVEGNWVLRHEGWYYLFYSGDNCCGPKAHYAVMVARSRNATGPFETLEQAMGRQHSII
                     LKKNRRWIAPGHNSTITDRSGHDWIVYHAVDVHRPREKPTDEVNTRRVMLIDRIRWHN
                     GWPVIAGPSATPRQKPVP"
     gene            12582..13367
                     /locus_tag="VE968_10230"
     CDS             12582..13367
                     /locus_tag="VE968_10230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007684435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HZU52238.1"
                     /translation="MDNVHTLERKPALIKPPPAAEAFYSEVLRLMAKSEIPFLVSGTY
                     ALASYTGIDRPTKDVDVFAKAGDALKMLHYFKEHGFDVEIVDERWLARITRGEMFVDV
                     IYNMPTVTTHITDEWFINAPEAKLFGAKVQLVPPTQFIWSKIFVQDHHRYDMADVAHM
                     ILKCHEAIDWKQLLSHMELYWEVLLVALLNFRFVYPSERHIIPRWLMDELLERLGDQY
                     DVKGPGKKVCRGRIFSPRDYAIDVEQWGFSDAVGNLEEQYASE"
     gene            13375..14082
                     /locus_tag="VE968_10235"
     CDS             13375..14082
                     /locus_tag="VE968_10235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013053645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HZU52239.1"
                     /translation="MRVAAIGDLHVQEDSVAPYREMFTEISSKADVLVLCGDLTNFGK
                     TKEAEILADDIKSCSIPVLGVLGNHDYECGQPDKVCEILTAAGMKVLNEQALEIDGVG
                     FAGVKGFLGGFGRGELAPFGEPIVKAFVDEVMNEARKLENQLRTLRTSRSVAVLHYSP
                     IEQTIEGEPPSIYQYLGSQRLCEPIDRFDHVKAIVHGHAHHGTYEGRTPLGKPVYNVA
                     QFVLRPKFGKPYVVLEV"
BASE COUNT         2808 a         4437 c         4133 g         2821 t
ORIGIN      
        1 ttgtacgcct cggcgaacgc ctggccacgt ggactgctcc cgcgcgtcgc ggcgaggttt
       61 cgaaggtaaa gatagtcctc ccgtgcctgc ggcgtcagca ccgccatcgc ccgcggctgt
      121 agcggcgcgt gcaacgcaag gctctgctcg aagaccggca aggtcgacgt gaccgcgaca
      181 tgacgacgaa caagaagccc aatgagcgcg tttgcctgcg ggcttcccgg tttcattgca
      241 acgagtgtcg gcgtgcccac cgttggcgga caaacatcag gctgcttacc cggatcaagc
      301 tcagtgttca caaaaaaccc atgctcgaga tcgtcgatcc cgagcgatgc cgcttcggga
      361 taagtgaccg agcataggtg gccggtgatc ttgagaccgt gacgatgcgc ctcgtcgatc
      421 gcagccttaa gctccgcgcg cgtgatgttc atgtacgcct tgaatgaggt cgcgccctgc
      481 tcggcccaga atgcaaccgt gcgccgcgcg tcatcagcgt cgcgcagcgg gtgcatctgg
      541 atgaaaggac ttccctctcc ttcgaggtac ggtcccgtga catccatgtg ggggccaatg
      601 agcttgccac tgtcgatcgc cgccttgacg ttgagatcgg tatagggctc gacacttcca
      661 gtggtgcgca tcgtcgtgac gccgcttgca aggtagagac gcggagcact gaacgtcatc
      721 tgggggacgt cgagcggatc ctcggcatgc ccgctcgcgt caaggtttgg ccgcgcgata
      781 tagaacatgt gatcgtgcat tccgacgata ccgggaagag cggtctcgcc tgtaccgtcg
      841 atgatgcgat agccgctcgg gacttcagca ccagcgggca gcacggcacc aatccttgcc
      901 tggtcgatga gcaaggtcgc gttttcgagc ggtgcggctc ctgtgccgtc aatgatccgt
      961 aaatgcgtga tcgcgatctc gcccgcggga atgtggacat aagtcgcgac atcggctccg
     1021 agctgtgccg gtggaggcgc aagtaccggt gctgcggcag ccacgccggc gaccattatc
     1081 gcgagaaacg cagacgacca gagcctcatc actccccctc actcaaaaac gccagcgcgg
     1141 tcattacagc ccggctgccg cctttgtgca atgactaagc tcaagctccg gcaattgcgc
     1201 tcgcaattga aatcacgggc ggcagtgtgg cgacgagcga tactgcgcaa tgcacggcaa
     1261 caaggatcgc agcggcacag aaggtcgctg ggtgcatcga tccaagcact tttcggtcat
     1321 gcattgcgag cctcgcgacg aagccgagct gcacgaccag tgcaacccac tctccataac
     1381 cgcccaacag aggcatcggc agcagccttc cgagcgccgg ttcaaggagg aggaaggttg
     1441 cggcgaacat catgcggcgg tgccattcgg tccgccgtct aagcgcgact gcccagccca
     1501 cgacgaatgc aaagaccgat gcctcgatcg cggtaagtgc caggaaatag ctcgaggtga
     1561 agaagggcgg taccatgtgc tggcgaagcg cctcataccc gacggcgcat ccaagaacgg
     1621 caacggcagc aacaaccgct gccgacagcc agccgagctt tcgatggatt gcgagctcac
     1681 cacgatgaac aagctggttc tggatgacga ataaagcgag ccagctcacc atgatcgcgg
     1741 cgtgggcgtg cacgatcggt ggcacggcac gtatgtcgac caacccgcgt agcgagaact
     1801 gagcgaagct cgcgatgatg aacgtcgcga tgaaaatcga ataacgcgcg aaaaacgcct
     1861 ggtccgccat gaacccacga ccgcgcaccg gcacctttgc cggctcagct ttgctggcca
     1921 tcgatgaaaa accccctgtt tttttgcgcg cacttcgctt gcgccgcgaa aaatggcgca
     1981 aagcccgccg gcgcacttca gcgaccgcgc gtcacttagc ttaagcgcgc accaaagagc
     2041 attcggcagt tgcggccgat ctctgccgaa atccgtaatg ttcggcctag cgactcatcc
     2101 gaagaaaagg agcgtccgct caggcctcat ggtggtggcg acgccctgaa tgcgagcttc
     2161 cgccagcttt cgtcttatcg gtcgagtggt gatttgaatg gtgcttgtgc cgcaccgcac
     2221 tgctctcttt tgtcgcgccg ttgtccgatc gatggctgcg gcgagcctcg ccgcgatgct
     2281 tcttgaagtc atgggtcgag tgatggtcgt gtcgaacgtt cacgcgattt ttcttcgagg
     2341 catggtgacc attcctggcc tcacggaagg tggcgcctcg gtcctccgag cgatgatgcc
     2401 ctcgatgctc atgtcgagcg gcattatcgt ggtggcggtg gtctctggcg tgccgtggat
     2461 gaattcgctc gtggcgattt tcatcgcggt ttcgaagctc ctccctcgca ctcgcgcact
     2521 cgctatgccg gagcatttga cggtggctca gctttcggca ccttcgcatc attgccttcg
     2581 ttgcccgcgt tggagccggg tgatggacga ccgcgcgatg gcgccgcgtg acgccatggc
     2641 gattcgctcg cgctcttggc gtgccgacgt ctacccagcg atggctcggc gcccttcttg
     2701 gcattggcgg aaatggtggc gggctctccg gctccgactg cgtcagtggc ggcggagcgg
     2761 gctcgctttg cgtcgaggtc tgcggcgccg ttcctttttc ctcggtagga ggcgccggct
     2821 gatccggaac ggtctgctgg gccatggctt gcgaagcgat cagaatcgcg cccaagagtg
     2881 cccatccatg cgacgcaagg cgcattcatg attccttctg gcaagtggtc ttttcaaaac
     2941 gcatagcgca gccgcatcac ccgatcacgg gtttggaagc aagttcaacc gaaccgatgc
     3001 acgacccgtc ggtgcttcga cgtcggcgca attgccgcca atgcttgctc cacctttgcc
     3061 aatttgtaga actagtcggc ggaggagagt tgattggcga gtctggaact aaggggcgtt
     3121 cggaaggcgt atggtgcaac gccggttctc gataacgtca gcctgacgct tgaacagcgc
     3181 gagttcattg ccttccttgg gccttccggc tcagggaaat cgaccctgct acggatcatt
     3241 gcgggccttg aaagtgccga cgccggtgaa atctggctag aaggcaagcg catcgacaat
     3301 ctgccgccag gcgagcgctc gatcgcgatg gtattccagc attatgcgct ttacccgcac
     3361 atgagcgttc ggcagaacat ggccttcggt ctcaagaacg cgagggtacc acgcgacgag
     3421 atcgaccggc gaattgccga tgctgcggcc gtcctcgaga ttaccccctt gctcgaccga
     3481 aagcccgcgc aaatgtcggg aggacagagg cagcgcgtcg cgatcggccg ggcgctcgtc
     3541 aaggaaccaa agctattcct gcttgatgaa ccgctttcaa acctcgatgc cgccttgcgc
     3601 ctgcggacac gcgtcgaact tgcccagctg aagcagaagg tcgacgccgc cgtgatcatg
     3661 gtcacccacg accaggccga ggcaatgacg ctcgccgacc gcatcatcgt aatgaacgat
     3721 cgccggatcc agcaggtcgg cccgccaatg gagatctata gccagcccgc gaacatcttc
     3781 gtcgcccaat tcgtcggctc gcccgcaatg agcttgctcc cggcgaccat cgacggtggg
     3841 gattacgcgc ggctcaagct tggcgatggt tcgaccgtcg agacacgcgt tcctgcgacc
     3901 agtctcccga acggcgaact gcgcgtcggc gtgcggccgg aggccgtaac cgtcgtcgac
     3961 ggtcccggga cgacaaaggg caaggttgac cttgtcgaac gcctcggcga gcgaacgctc
     4021 gtctacgcga agcttgccga tggacagccg atcactgcgg aagacgatgc cttcagccga
     4081 gtgaagatcg gcgacgaggt ctcgctcaag attgagggta atgcggcgca cgtcttcggc
     4141 ccggacggaa ccggctatca cggcgccgcg gcatgacggt ggaacgcgac tggcgcggaa
     4201 tcctctttgt cgcgccattc gtgctcctct attcgctcat tctcattttt ccgctgctcc
     4261 ggggcctgtg gctgagcctc aaccaggtcg acctgttcgg tgccggccat ttcgtcggct
     4321 ttggcaatta tgacgcgctt tttcacgatc caatctttgg agcctcgctg gtcaacacgt
     4381 tcgaggtgac cttgatgatc gtcccggcac tgacggtcat cgcgcttctc cttgccctct
     4441 cgctcaacag tgcgggaaaa ggtgctgcac tcctgcgcgg catcttcttc gcgtcggctg
     4501 ttctttccgt gaccatcgtg acgctcgtct ggcgcttcat gcttgctccc gacgcaggcc
     4561 tacttggtgc aatttggaag gcatttggat gggagccggt acccttcttg tccgatgtcc
     4621 acctcgtcct tccggcactc gcgatcacga caatatggtg gtcggttgga tttccaatgc
     4681 tgttgttcct cgccgggctg cagcaaatcc ctgaggacat gtacgaggct gcagcgctcg
     4741 acaatgccag ccggtggacg accttctgga agatcacgct tccctcgcta aggcgcacga
     4801 ccattcttgt cgtaatgctc cagacggccg cgcaattgca gcttttcggg caatcccagc
     4861 tgctgaccgc gggtgggccg agtggtgcgt cgcgaacggc ggtcctgttc ctgtttgaaa
     4921 gtgcctttgg gcgttgggag cttggttatg cgagtgccgc cgccgaactc ctgtttgtca
     4981 tcatccttgc cgtgacactc acccaatatt gggcgaccgg ccgcgcttcg gacgcgtctc
     5041 atggcgagta gggtggaacg aggccggctg acgccgcttg ggtggggcgc actgctgctt
     5101 ggcgcgctcg tcatgatcgt gccacttgct tggaccctgc tgctgtcgct caagcacaat
     5161 gccgagctcg ttggtcacag cgaggctgcg cttcatccac cttatacgct cgagaattat
     5221 ggcgcgatct tcggcaacag catgacgctt cgctggctgc tcaacagcgc gatcgttgca
     5281 tttgggcaaa ccgccggtgt cctcattctc tcgagcctcg cgggctacgc gttcgcgcgt
     5341 ctcgactttc cgctgaagcg aacattgttc gtgatcgtgc tccttggcct cgccgttccg
     5401 agccaggccg tcattctccc gcagcatgag ctgttcgcgt ggctccacct tcacaacagc
     5461 tatccgggat tgatccttcc cggcctcgta gcgccgttcg gcgtgttctt catgacgacc
     5521 tacatgcgcg gcattccgaa ggaacttgac gaagccgcgc ttctcgacgg tgcgtcgcgc
     5581 tggacaatct tttcgaagat catcgtgccg ctcaccttgc ccgcgcaatc gacacttgcc
     5641 gtgttcacct tcctcggcgc ctggaacgat tattggtggc cgctcatcag cgcaacgcga
     5701 agcgacatgt atacgctcac cgtcggcctt gctgctgcgc agatgaacta cgcacagacg
     5761 agtggtcttg gatacctgat ggcgcaggcg gtgttcgcct ctatcccgat tttcatcgtc
     5821 tatatcgtct tccagaagca gatcgtgcgc gcgatggcgg gcgccgccgt acgatgaggc
     5881 gggccgccca agctcttctg ttggcaatcc tgctgcttgg gagctgcgcc aggccggacc
     5941 atcgcacgca cctctatctc cagcgatttt tcggcgaatg cggcgccgaa tatggcggca
     6001 gtacggatat tgcgaaggct gaaggggaat gcgggatcat cacgacgatg atcgatcgct
     6061 tcaatgccga aaatcccgac atccacatcg acgtcaacgt ggttgcgtgg ccgggctacc
     6121 cgcaattgac cgcgcaggtt gccgcgcgag acccgcctga cctggttacg atgcacgaag
     6181 gcgtcatcag cgattatgcg ctgaagggcc tcgtcgaacc ggtcgacgat tatcttcaaa
     6241 aggcaggcat caagccgacc gacttcactg acgcggcgcg cgcgggcgtt accatcaacg
     6301 ggcacgaata tgcgcttccc tgggataccc atggaggcct gttccatgtc aacactgcgc
     6361 tattcgccaa ggcaggattg atgcgtgacg gaaagcccat cctgcccaac tcgccgcagg
     6421 aactcatcgc cgaggcacgg cagttcgagc agcggaccgg aaagccctat ctcatccaga
     6481 gcaacgtcgg cgatcctgcc ggcgctgcgc gcaacctcta tacctacatg atggctcagg
     6541 gcgcggtcct ctttcccgac gcgcaccaca tcaggcttga tacccccgtt ggaattgaag
     6601 tcgcgagctt cttcaagttc atcaacacgc aacgacttgg aacgttgaac atggatacgc
     6661 cagcggcaat cgctgccttc gtcaacggcg aaggtggaat ttacccgacc ggcacatgga
     6721 tgatcggatc gttccagcag gaagcgacaa cgcccggaag gccgctctac aaaagctatg
     6781 cagtctaccc ctacccgcat ctttggggcc agtgggtcga atatgtgagt ggacacacct
     6841 gggttgtacc gacgcgaaag cgcagccctg agcaacgcga ggcgattgcc cgtttcttcc
     6901 ggttcatggc agcgcacaac tacgactggg cgcggaccgg ccatattcca gcgttcaagg
     6961 cggtcctcga cgatccgcgc ttcaagtcac tgcctcaccg agccgatatt gctccacttg
     7021 ccaagatcgg gcggccactg ccgagttacg tgcaacggca gaacgcgatc gaggggctcg
     7081 tcggcgagga agccgcggct gctttcacgg gacagaagac catccaggcg gcgctcgcct
     7141 cggcgcagcg gcgggtcaat gacatgcttg cgcaggtcga atagccgtta ttaacttcgc
     7201 tcagtgttgc atgaatgccg cttgaatgtc ctagaagtca cgtcgtagat attgcgcata
     7261 ctgtaaccgt ttacagctgt ttcttgtcac gtggagaggg gcaatatgcg gcacgcatct
     7321 accttgttcg tttcgacttc ggtcctcgtc gccattagct tggcatcgcc ggcgcttgcg
     7381 cagaatgcgc ctcccccgcc cccgccggac caaaccagcg gcgggacgga acccaccgtc
     7441 tcaaaccaga cgaatgcatc gacggacacc gcggccgcgg accagacgat cgttgtcacc
     7501 ggtcttcgcc gctcgttgca gtcatcgcgc aatattcgcc gcaattccga gcagatcgtc
     7561 gattcggtcg ttgccgagga cattggcaag ttgccggacc tcaacacggc cgagacggcg
     7621 gggcgcattc cgggcgtcca gatcttccgg caaggcggcg aagcgcagaa cgtcctggtc
     7681 cgcgggcttc caaacttcac gacgacctac aacggacgcg agatattcac ggcagaaacc
     7741 cgcgtcgtcg cgctccagga ttttccttcg tcaaacatcg cggctctcga agtttacaag
     7801 acatccaccg ctgacctggt cgagcctggc cttgccggct tgatcaacgt gcggtcgcgc
     7861 cagccgttcg acttcgacgg aacgaccgtc gctgggtcgg tatggggcct ttacacgcgc
     7921 cagggtcgct cgctcacccc caatttcaac gtgcttggaa ccacgcgctg gatgacgggc
     7981 gctggcgaaa tgggactcct catcaacgcc gcgtacgaga agatgcgcta tctcgaccgg
     8041 gaatcgtcga acaccgatta tgtcaacacg ttcggcattg gtccaaatgg tgcgctaacc
     8101 ggcaccgacc cggcgacggc gcccccggga ggccagatca tccgcatgcc ggacatccag
     8161 cggctctact atcgctccgg ctcgcgtgaa cggccgtcgg caaatgtcgc cttccagtgg
     8221 cgtcccgatc ccggcgttct cgtctacgcc gaaggtcttt accagggttt ccgtaaccag
     8281 atcgacgacc acttcctcga agtgccgctt tatggtggct cgagctatac gaacctcacg
     8341 ttccgcaacg gcaatctcgt gaacagcggc acgatcgttg gaatgccggg aggcgtctgg
     8401 ggctggcaag gtgcgacgta caaccgcacg aataccttcc agggcgccgt cggaacgaaa
     8461 atcgacaagg ggccgatcaa gttcaacttc gacctagcgc gaacttggtc gaccttcttg
     8521 ggttcgaccg aatcggtcga ccgccgttgg gagggcaccc cgaccatcaa cttcaacacg
     8581 agcgagcctg gttttacgat ttcgggaatc aatctcgacg atccgaccca gcagacgttc
     8641 cagggcctgt tcgaagaaaa ccagcgctca gccggacgcg actggcaggc gcgcgccgac
     8701 ttcgaatatg acttcaacag tccgttcttc aaaaacgtgc aggctggatt ccgctacgac
     8761 cagcataacg ccgttcgtaa ctacgcgaac cgttactcct acctgctcaa cctcggaatc
     8821 ccggcaagtg cgttgcccgt cgacaatgaa gtgttccacg ggctcgatgt gggcaatgga
     8881 agcacctaca actgggtcgc cccaacctat atcagcgttc ggcagggcgt cgttcagttc
     8941 cgcgacttca tcgcggcgca atgcccacgc attcttccga cggatcccgg caatggctgc
     9001 acgtcctacg tcgcgacgaa tggcggccca attccggcgg cattgttgtg gacgggccat
     9061 gagcattcga ttgccggcta tgcacagctg cacgtcggca acgacaatat cgacgggtcg
     9121 gtcggcggtc gctggctcca cgtcaatacc catgtcgccg gacccgttcc gaccggcatt
     9181 ccgcagctcg atgagccgag caagcactcg gtgttcctgc cagacgccaa cgtacgcgcg
     9241 cggctgaacg aagccgtcca gcttcgagca tcggtgtcga aaacggagac actccccgat
     9301 ttcagccagc tcgttccctc gatcgtcttc gcatcgccgc caagcggcgg catcggcacg
     9361 ccgagttcgc cctggggtgc gagcggcgga aatcctttcc tgaagccgtt cacgtcatgg
     9421 aactttgacg ctgcggtgga atattatttc agccgggcag gcttcgtctc gctgacgggc
     9481 ttccaccaca aggtgaatgg cttcattcag acgaacacgt tcgagtttac cgacgcgacg
     9541 catggcgtcg tggaggtgac tgcaccggaa aacaccggca agggccatat ctcgggtctg
     9601 gaactacagg gccagacctt cttcgacttc ggtttccttc ccgactgggt gcgtggcttc
     9661 ggtgtccagg ccaacgcgac ctatatcacc gacaaagtgc agcagccgaa cggaacgtcg
     9721 accaacggca ttccgaactt gagctactat ccgatcacgg atccttacaa cggcgtctcg
     9781 cgatggaact acaacctcgt tctgatgtac gagcattacg gcctgtccgg tcgactctcc
     9841 tacaattacc ggtcgcgcta tgacgtcgag cggcagttcc gcggcaacga cgtcttcagt
     9901 gaatatgcaa agccgggcgg atggctcgac ctttcgctca actacaatat caacgatcac
     9961 tgggtgctgt tcggcgactg gaccaacatc ctcaggaaca agttccgcca gtatgagcag
    10021 tcggcgcgat cggtcgccgg tgtgacgccg ccacaggcaa cgttcatcaa cctcctgcgc
    10081 tacaacgaaa gcacgatgtc gctcggcgtc cggttcaact tctcgggccg aaaggcagcc
    10141 ttgccggccc cagttgccgc tccgccgccg ccgccgccgc caccaccacc gccgccagca
    10201 acccagacct gcgcggacgg ctcggtgatc ccggcaggtt caacgtgccc ggcgccaccg
    10261 ccgccaccgc cgccgccacc cgcgccggaa cgcggatgag gctacgacca agactgcaat
    10321 aatcgaaggg cggcttttca gccgcccttc ttctatcccc tttcggttct tgccgaatct
    10381 tcgcgcaggc ttggcccaat cactggcttg ccatccttcc agtacaaggg cgcaatgtag
    10441 agctgacgct catcaccctc tttgcggcaa tagcgggagg cttcccacgc atgaaagctg
    10501 atgaacatgc gtgtcccgac actaaagaca ctctggtgac ccggaccact gaggcatcct
    10561 gcctgcttgt cgtggaagct gtggaggatg ggattgtccg gcgagtcccg acaggggcca
    10621 agcgggccgg aacatcgcgc atagcccatc gaataaggcg acaatccccc ttcctcgacg
    10681 ttccagccga aaaagccgcc tgagtagaag agtgcgtagc ccgtcggaga acggaccatc
    10741 gtcggcgcct cgatcacgcc gtccttccag cgttcgcgat ccccgatcag cggaacggga
    10801 tcgccgaccg tcgacaggcc gtcttcggtc agccgctgtc cccagagcgc ggttgcttcg
    10861 tggacgcgat tcccgtcgtt cttgaagtaa agatagagat tgccgtccgc atcgcgaaac
    10921 gggctcgcgt cgatcgtgcc accgagcttc gtttggcaaa ttagcggcgc cgttgccgta
    10981 tcgcggaacg gaccttcggg gtcccttgca atggcaacac caatgcactg cgcgttgtgc
    11041 ttgcgatcgc tcgccgtgta gtaaaggagc cagtgaccgc cagccgcgat cacttccggt
    11101 gcccaggtga aaccaggctt cgcccatggg ccaagctgcg gcagcgcgtc gcgcttctgg
    11161 cccgtcgccg ggtcaatcac gaagctccag tgaacgagat ccctcgagct agccatcggc
    11221 acgttcggcc ccgcgttggt cgaataggca atgaactgag agccataagg aagcacgaaa
    11281 gcgtcgggga aattctcccg aaagactggt tcgaacgagg gctcagcggc gctcgtggtc
    11341 gacggcgcaa tcgccaatgc aacccaaacc agcgcatgaa aaaatcgcat caacgtcctg
    11401 gtcctacccg ctgcagctcg gaaacatgat cgaagcccct tgccgctgac tgtctgaaac
    11461 ctaaggtgaa tggatgacct ggaaagcgct cgcttgcgcc actgccattc tattcgcctg
    11521 cggcatggct catggcgcgc acaagcctct cgcgcgagaa acatacatca atccagtcat
    11581 caacgccgac tttcccgacc ccgacgtgct catcgctccc gacggcactt actacgccta
    11641 tgcgacgcaa accatgaagg ctcaccagtg gatcaacctc caggtcgccc ggtcgcgcga
    11701 cctcgtgcac tggcatttcc tgggcgatgc attgcccgtc aaacccgctt gggccgccaa
    11761 gacacaggac ttctgggctc cggacgtcgt tcgtgaaggc gatcggtaca tcatgtacta
    11821 ttcagcaaag ccggacgtgg cgctcaccga cacgaaacag ggaatgtgcc ttggtgttgc
    11881 gacggcaagc gtgccggccg gaccattcat cgacattggg catccgctcc aatgcggcga
    11941 gggtttcgtg aacatcgatc caaccgagtt tgacgatccc actaccggca agcatttgct
    12001 ctactggggt tcgggcttcg agccgatcaa ggtccgcgag cttggttctg atcttgtctc
    12061 gtttgcgcca caaagcgagc aactcgatct cgttgctcct aaccccgtca agggcgcctt
    12121 ccccgtcctt gtcgaaggca attgggtcct tcgccacgag gggtggtatt atctcttcta
    12181 ttcgggcgac aattgctgtg gtcccaaggc ccattacgcg gtcatggttg ctcgctcgag
    12241 aaatgcgacc ggcccattcg aaacgctcga gcaggcaatg ggcaggcaac acagcatcat
    12301 tctcaagaag aaccggcgct ggatcgctcc tggtcataac agcacgatca ccgatcgctc
    12361 cggccatgac tggatcgtct atcacgccgt cgacgtgcac cgaccgcgcg aaaagccgac
    12421 ggatgaagtg aacacgcgcc gagtgatgct gatcgaccgc attcggtggc acaatggatg
    12481 gccagtaatt gccgggccat ccgcaacgcc gaggcaaaag ccagttccct gagcaagtgc
    12541 caccattgga acttgcgctt gccgcctccc gtttcagcga cgtggacaat gtgcatacgc
    12601 ttgaacgcaa gcccgcgctg atcaagccgc cgcccgcggc tgaggccttc tattcggaag
    12661 tgcttcgcct catggcgaag tccgagatcc cgttcctcgt ttcgggcacc tatgcgctcg
    12721 cgagctacac gggcatcgat cgaccgacga aggacgtaga tgtcttcgcg aaggccggcg
    12781 atgccctgaa gatgcttcac tacttcaagg agcatggatt cgacgttgag attgtcgacg
    12841 agcggtggct ggcgcgaatc acccgcggcg agatgttcgt cgacgtgatt tacaacatgc
    12901 cgaccgtcac gacgcacatt accgacgagt ggttcatcaa tgcgcccgaa gccaagctgt
    12961 tcggcgccaa ggttcagctg gtaccaccca cccagttcat ctggtcaaag atcttcgtcc
    13021 aggaccacca tcgctatgac atggcggacg tcgcgcacat gatccttaaa tgtcacgaag
    13081 cgatcgactg gaagcagctc ctctcgcaca tggaactcta ttgggaagtg ctcctggtcg
    13141 cgcttctcaa ttttcgcttc gtctatccaa gcgagcgcca catcattccg cgctggctca
    13201 tggacgagct gctcgagcgt cttggcgacc aatatgacgt gaaaggaccc ggcaagaagg
    13261 tttgccgcgg ccgcattttc tcgcctcgcg attacgcgat cgacgtcgaa caatggggct
    13321 tttcggacgc ggtaggtaat ctcgaagaac aatatgccag cgagtgatcg aaagatgcgc
    13381 gtggccgcga ttggcgacct tcacgtgcaa gaggacagcg tcgcgcccta tcgcgagatg
    13441 ttcaccgaaa tatcgagcaa ggcggacgtc ctcgtcctgt gcggcgacct caccaatttc
    13501 ggaaaaacga aggaggccga gatccttgcc gacgacatca agtcctgctc gatcccggtt
    13561 ctcggcgttc ttggtaatca cgattacgaa tgcggtcagc cggacaaggt ctgcgagata
    13621 ctgactgccg ccgggatgaa ggtgcttaat gagcaggcgc tcgaaatcga cggggtcggg
    13681 ttcgccggcg tgaagggctt tctcgggggt tttggccgag gcgagcttgc tccatttggc
    13741 gagccgatcg tcaaggcatt cgtcgacgaa gtgatgaacg aggctcgcaa gcttgaaaac
    13801 cagcttcgaa cgttgcgcac cagccggagc gtcgccgttc tccattattc gccaatcgag
    13861 caaacaatcg aaggcgaacc gccgtcgatc taccagtatc tcggctccca gcgcctgtgc
    13921 gagcccatag accgcttcga tcatgtgaag gccatcgtgc acgggcacgc ccatcatggc
    13981 acttacgaag ggcgcacgcc gcttggaaaa ccggtctata atgtcgcgca attcgttctg
    14041 cggccgaaat tcggcaagcc ctacgtcgtc ctcgaggtct gattacccct tgtcagcacc
    14101 ggggattggc gtcggcgtct caagcgcttc gatgacgtac agccgcttta cgagaacgta
    14161 ggcaaccact gcgagcggtg ccgcgagaag gattccaat
//
LOCUS       DASRBJ010000372         7739 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomicrobium sp. isolate SMAG_U9924 k141_47272,
            whole genome shotgun sequence.
ACCESSION   DASRBJ010000372 DASRBJ010000000
VERSION     DASRBJ010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963453
            Sequence Read Archive: SRR5579884
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomicrobium sp. (soil metagenome)
  ORGANISM  Sphingomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomicrobiaceae; Sphingomicrobium.
REFERENCE   1  (bases 1 to 7739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 18:48:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,055
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 23
            tRNAs                             :: 20
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 6 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7739
                     /organism="Sphingomicrobium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47272"
                     /isolate="SMAG_U9924"
                     /isolation_source="soil"
                     /db_xref="taxon:1940456"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.7999 N 76.3402 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(337..498)
                     /locus_tag="VE968_10240"
     CDS             complement(337..498)
                     /locus_tag="VE968_10240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HZU52240.1"
                     /translation="MMKVLKLIKNEKGATAIEYGLIAALIAVAAIGAMQGIGNKLNTT
                     FNNVSNNLG"
     gene            complement(662..1456)
                     /locus_tag="VE968_10245"
     CDS             complement(662..1456)
                     /locus_tag="VE968_10245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52241.1"
                     /translation="MATIFDRPLTAPTGNERFFLGAAIAMTLVIVLGFVNQLAMGRST
                     FYSPPLVHAHAIMFMGWVTIYLLQNIFAATGRMELHRRLGWVAAGWIIPMIILGFGVT
                     LAVVRRGQVPFFFRPLQFLIFDPASLLTFAGLTASAIILRSRTEWHRRLHLCGMSMLM
                     APGFGRLLPLPLLEPFAWEASFAAGLVFPVAGIVADLKRTGNVHPAWRYGLVTMIGAF
                     VAIEAITYSGVGKLAYRGATWDSPGAKVAPLEFGAPPPGGLVTGRS"
     gene            1759..1965
                     /locus_tag="VE968_10250"
     CDS             1759..1965
                     /locus_tag="VE968_10250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52242.1"
                     /translation="MPDTSVLFQLPDTRTTNQQALSWSSIAAAFRHHARSLPHEEARE
                     LLDFAELMESFEELEQRAKKAIGD"
     gene            2187..4961
                     /locus_tag="VE968_10255"
     CDS             2187..4961
                     /locus_tag="VE968_10255"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HZU52243.1"
                     /translation="MLLVGSVAVPAVASETPRYEATPSWVLPAPPIKSSTGPAPLIAI
                     IDQQTRIVDGTVWTYRELGSRAVSADALAKLGTVTLNWQPFHGDLIIHRVDIIRDGQH
                     IDVLKSGEKFNVIRREQGLEKLEMNGILTATLQVEGLRVGDILDVAYSVSAKDPTLKG
                     AVQTSSLAVTQPFKVDFARVRILWPKGFPIRWKAYPVGLKPTERDNADSHELDFALPA
                     PKQPDMPADAPKRFKPIDAIELSSFADWPAVSSIFAPLYRTTGLIAPGTPLAQEVAQI
                     RARETDPKRRAAAALALVQDRIRYFAEGMNGGNYIPQSPARTWAAGYGDCKAKTLLLL
                     AMLHELGIEAEPVLANIGAGDLVRIRLPAPAAFNHIFVHAKIAGEDLWLDGTGRGTRL
                     EDLGDVPPFETVLPVRDSGANLLQLPAKAPARPIRTVNLDIDQSAAIGTAAPFTATVQ
                     IRGGAADAMRGIVAQLDNEKLLLLALLSLGGAAGSDAIPVTQKFDFDNAHGTATITLS
                     GIARLGWERQNHAYRFRPASAISGLSLSSDRSHPAWKDIPIATGEPGNSLVTTRIHLP
                     DGGRGIVLEGDPSLDLLVAGRHYVRKGALTNGVLTIDEQTTSTGAELLPAELPAARAR
                     LASAQERVLRLATSTSYPAPFEQVEMARQTHKLDKLAALYTAFIAEKPDDASRYLRRA
                     AFYEGTFQRNLALADLDKAVSLDGNAATLLRRALLLEAMGQKDKAAADYRSALEVDPS
                     SKAALARLGLLEIDAGRKDAALAPIDEHLANADEDKPDWLMIKADLLARAADSEGALA
                     AINSAITLKSTNPALLNERCWIKGTLAVQLDSAIEDCTRAVELTENNVAELDSRAMVY
                     FRLNRLNDALADLNAALDRNPGAAGSLYLRAVVERRLGKTHEADVDAANARRLLPTID
                     EDYARWKIKA"
     gene            complement(5065..5232)
                     /locus_tag="VE968_10260"
     CDS             complement(5065..5232)
                     /locus_tag="VE968_10260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52244.1"
                     /translation="MTNEAYVIAREAIKRTAEFEGKLYPKEQESHYFALAALAALEQS
                     GYVIAKQPASE"
     gene            complement(5364..5516)
                     /locus_tag="VE968_10265"
     CDS             complement(5364..5516)
                     /locus_tag="VE968_10265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52245.1"
                     /translation="MKPYILGAICVWFISGVAGAVMLGQQRLDVPTIIGGPMTFWNGL
                     NNPVDR"
     gene            5903..7201
                     /locus_tag="VE968_10270"
     CDS             5903..7201
                     /locus_tag="VE968_10270"
                     /inference="COORDINATES: protein motif:HMM:NF012861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HZU52246.1"
                     /translation="MVRRSFVTSRHFYLHSARTRRQLVFLLGGIVVGGAAVALALLAD
                     EAQAVFRSLLVRSRYASLIVTPFGFAVVAYLTRRVFPNSQGSGIPQAIAARHLTDQNA
                     RGTLVSIRIAVGKLFLTLFGLLCGASIGREGPTVQVGASIMFAVGRLSPRRQPGLILA
                     GASAGVAAAFNTPLAGIVFGIEEMSRAFEERTSALLIVAIVAAGLTSLALLGDYTYFG
                     TTSAKLGAVGWLAVPVCGIVGGLLGGTFSRILIEFGRGLPGATGKAIKSHPIVFATLC
                     GLGVALCGLASHDTIYGTGYAQVRPLLNRGVALPQSFGLLKLTATALASISGIPGGIF
                     SPSLAVGAGIGFNLSTLFPSTPVAALVLLGMVSYFAGVVQAPITSFVIVTEMTNDHSM
                     VVPLMAAAFIGRAASRLICREGIYHALSKNFIAAAEKKST"
     gene            complement(7554..>7739)
                     /locus_tag="VE968_10275"
     CDS             complement(7554..>7739)
                     /locus_tag="VE968_10275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZU52247.1"
                     /translation="FFICRGITEQWKPARAEDALPGALIKRLMVIPGPNHAKIDKEAR
                     KRYFAEHPDQRPECYPE"
BASE COUNT         1570 a         2344 c         2266 g         1559 t
ORIGIN      
        1 atccagcgcc taacgaatgg ccgaaagtcg gaatcgccga agcaccagga ccaacgcggg
       61 tcaccgagat gttgatgatg ccaattcaga tttcgcgggc aatttctgcc tcacaagaac
      121 caaagtcgag gtccaatgcc gccgatcggt gcctttcggt cgggcgccta tggatgcgac
      181 gggctatcgg gatggacggg cgagcaaaat agccgcgctc gaagctggtc tgactggaga
      241 cgaccgaatc gcgcttccca ctcggtgtaa ctacaacaaa caggaaaaga gcggcagcgc
      301 gagggcgctg ccgctcttta gttcggccag gtaggattag ccgaggttgt tcgaaacgtt
      361 gttgaacgtc gtgttgagct tgtttccgat gccctgcatc gcgccaatcg cggcgacggc
      421 aatcagagct gcgatcagac catattcaat ggcagtcgca cccttttcat tcttgatcag
      481 cttcaaaacc ttcatgatcc actctccggc atcgcagcca gcgcaatgct gggtcctgcg
      541 gcgacgttct gtacttatcg aaagttaggg caaggtaaga cagcatggtt aacgaattct
      601 tcgattggga agtagccccg gcgctggcac ccgccgatgg atacggcggg atttattgag
      661 atcagctgcg gccggtcacc agtcctcccg gcggcggcgc accgaactcg agcggcgcga
      721 ccttcgctcc gggcgaatcc caggtggcgc cgcgataagc caatttgccc actccactat
      781 aagtgatcgc ttcgattgca acgaacgccc caatcatcgt tacaagtcca taacgccagg
      841 ctggatggac attcccggtt cgcttcaggt cagcaacaat cccagcgacc gggaacacga
      901 gaccggccgc aaagcttgct tcccatgcga agggttcaag caagggcagc ggcaggagcc
      961 ggccgaaacc tggcgccatc agcatcgaca tgccgcaaag gtgcaggcgc ctgtgccact
     1021 cagtccggga gcgcaggatg attgccgatg cagtgaggcc ggcgaaggtc agaagcgaag
     1081 ctgggtcgaa gatgaggaat tgcagcggac gaaagaagaa cgggacctgt cctcggcgga
     1141 cgactgcaag agtgactcca aagccgagga tgatcattgg aatgatccag ccggcagcaa
     1201 cccagccgag acgccggtga agctccattc gacccgtcgc tgcgaagatg ttctggagca
     1261 agtagatcgt gacccaaccc atgaacatga tcgcgtgggc atggacgagc ggcggagaat
     1321 agaaggtcga gcggcccatc gccaattggt tcacgaagcc caacacgatg accaaagtca
     1381 tagcgattgc agctccgagg aaaaaacgct cgtttccggt cggcgccgtg agcggcctat
     1441 caaagatcgt agccatgctg tcccccgaat ggctaatgca ccaacataac ccaagcatgc
     1501 cgtcgatcaa agcggcgacg cgcattccgg cgcgcttttc tttcgccgat gccatagcgc
     1561 cgctgtcgct cgactctggc ctggtgaacg ggcgaaccaa tggcgattgc gttcgaggga
     1621 tcatcttctc gatacgcctc aagagcttgc cgaatccttc gcgtaaccct atccaaagtt
     1681 agtacgctag tcgtaagccg ccgccggttc gtcgaaagag gggcggcagc gtcgaagtct
     1741 catgaaacgg gcgcctccgt gcccgacacc tccgttcttt ttcagcttcc cgacactcga
     1801 accaccaacc aacaagcgct ctcgtggagc agcatcgccg cagcattccg ccatcacgcg
     1861 cgcagcttgc cgcacgagga agcaagggag ttgcttgact tcgctgagct catggaaagt
     1921 ttcgaggagc tggagcagcg cgcgaagaag gctatcggcg attaatgctc ggcgctaacg
     1981 ggggcttcgc ttggcgctcc gtcagcggca gcgcaatgaa ccgctccggt ttcccggcaa
     2041 cgaaaactcg ggccgcggca gggcgatcgg cagcaaacag ctttttattc ccgacggttg
     2101 caaaccaccc gctgctttgc gaacatcgcc ggtcagccaa atccgcgcgt tcatagggga
     2161 gaccggcttt gcgttttgct ctcggtatgc tgttggtcgg atctgtcgcg gtgcccgccg
     2221 ttgcgtcgga aacgccacgc tacgaggcca ctccatcctg ggtgctcccg gcgccgccaa
     2281 taaagagctc tacaggccct gcgccactca tcgctattat cgatcaacag acgcggatcg
     2341 ttgacgggac ggtctggacc taccgcgagc ttggttcacg tgctgtttca gccgatgcct
     2401 tggccaagct cggcacggtt acactgaatt ggcagccgtt ccacggcgac ctcattatcc
     2461 atcgcgtcga catcatccgt gatgggcaac acattgacgt cctgaagtcc ggcgagaagt
     2521 tcaacgtgat ccgcagggag cagggtctcg agaagctcga gatgaacggg atcctcaccg
     2581 cgacactgca ggtcgagggc ctccgcgtcg gtgacattct cgatgtcgct tattccgttt
     2641 cggccaagga cccgacgctc aagggcgcgg tgcagaccag ttcacttgcc gtaacgcaac
     2701 cgttcaaggt tgactttgcg cgggtgcgga tcttgtggcc caagggtttc cccatccgct
     2761 ggaaagccta tccggtcggc ctcaaaccaa ccgagcgcga caacgcggac tcgcatgaac
     2821 tcgattttgc gctcccggca ccaaagcagc ctgacatgcc cgccgatgcg cccaagcgct
     2881 tcaagccgat tgacgcgatc gaactcagca gtttcgccga ctggccggcc gtgtcgtcga
     2941 tctttgcgcc actctatcga acgactggtc tcatcgcacc aggtacgccg ctagcccagg
     3001 aagtagccca gattcgcgcg cgcgagacag accccaagcg ccgcgcagcg gcggctctgg
     3061 cgttggtgca ggaccggatc cgctatttcg ccgaaggaat gaacggcgga aactacatcc
     3121 cgcaatcgcc ggcgaggacc tgggccgcag gctacggtga ctgcaaggcg aagaccctcc
     3181 tcttacttgc catgcttcac gagcttggaa ttgaagccga gccggtcctc gcaaacattg
     3241 gcgcgggcga ccttgtcagg atccgcctgc cagcgccggc agcgttcaac cacatcttcg
     3301 tgcacgccaa aatcgcgggc gaggacctct ggctcgatgg tacgggccgg ggcacacgac
     3361 tggaggacct cggcgatgtt ccgccgtttg agactgtcct tccggtgcgc gacagcggcg
     3421 cgaacttgct ccagttgccc gcgaaggcgc cagcccggcc cattcgcacc gtcaacctcg
     3481 atattgatca aagcgctgca atcggaaccg ccgctccgtt taccgccacc gtccagatcc
     3541 gcgggggcgc cgccgacgcg atgcgcggta tcgtcgccca gctcgacaac gagaagctgt
     3601 tgctcctggc tcttctcagc cttggcggtg ccgcgggatc ggacgccatt cccgtcactc
     3661 agaaattcga ctttgacaat gcgcacggca cggcaacgat cacccttagc gggattgcaa
     3721 ggctcgggtg ggagcgccaa aatcatgcct accgcttccg accggcaagc gcgatttctg
     3781 gactttcgct gagcagcgat cgctcgcatc cagcgtggaa agacattcca atagcgacgg
     3841 gtgagccggg caatagcctt gtcacgacgc gcatccatct gccggatggc ggacgaggaa
     3901 ttgttctgga aggcgatcca tcactcgatt tattggtcgc cggccgccac tatgttcgaa
     3961 aaggtgcgct caccaacggc gtgctcacga ttgacgagca gacgaccagc actggcgcgg
     4021 aactgctccc ggccgagctc ccggcagcgc gagcaagact tgcgagcgcg caggagcgcg
     4081 ttcttcgtct cgcgacttcg acgagctatc cggcaccgtt cgagcaagtg gagatggcgc
     4141 ggcagaccca caagctcgac aaactggctg ctctctatac tgcattcatt gccgagaagc
     4201 cggacgatgc ctctcgttac ctgcgccggg ctgcctttta cgagggcact ttccagagga
     4261 accttgcgct tgccgatctt gacaaggcgg tatcgctgga cggcaacgcc gcgacgctcc
     4321 tgcgccgtgc tcttctcctt gaagccatgg gacagaagga caaagcggct gccgactatc
     4381 gatccgcgct tgaagtcgac ccctcgtcga aggcggcgct tgcaagactg ggcctccttg
     4441 aaatcgatgc tggacgaaag gatgcagcgc tcgcgcccat cgatgaacac cttgcaaatg
     4501 ccgacgaaga caagccggac tggctcatga tcaaggccga cctcctcgca agagcggccg
     4561 acagtgaggg tgcccttgcc gcgatcaatt ccgcgatcac cctcaagtca accaatcccg
     4621 cacttctgaa cgagcgctgc tggatcaagg ggacactcgc cgtgcaactc gacagcgcga
     4681 ttgaggattg cactcgagcc gtcgaactca ccgaaaacaa cgtggctgaa ctcgatagcc
     4741 gcgccatggt ctattttcgg ctgaaccggt tgaacgatgc ccttgccgac ttgaacgccg
     4801 ctcttgaccg gaaccccggt gcagcgggct ccttgtatct gcgagccgtg gtcgagcggc
     4861 ggcttggcaa gacccacgag gcggacgtcg acgccgcgaa tgctcgtcga ctgttaccca
     4921 cgatcgacga ggactatgcg cggtggaaga tcaaggcgta atcgatcgtc ttagaacgga
     4981 cgcccatttt gccgctgcca gcttctaatt tcgagcgcgc gactgggctg aaggcacgct
     5041 actgctgccg cgatgattgc tcgcctactc ggaagcaggc tgcttcgcga tgacatatcc
     5101 ggactgctcg agcgcggcga gcgcagcgag agcaaagtag tggctttcct gttccttcgg
     5161 gtagagtttg ccttcgaact cagcagtcct cttaatcgct tcacgagcga tgacatatgc
     5221 ttcgttggtc aagcgaagtc tccgttgaag tacagggggg ctgatagcat tcctggcggc
     5281 tatcggagaa gacgccacga actcacgcat aagcccagta ggtgcatctc agcgtcgcgt
     5341 gagacgatgc gcttgaattg ctgctaacgg tcgaccgggt tattcaaccc gttccagaag
     5401 gtcatcgggc cgccgatgat cgttggcacg tcgagccgct gctggccaag catgacggca
     5461 ccagcgaccc ccgaaatgaa ccaaacgcat atcgcgccaa ggatataggg tttcataacc
     5521 tgctcttcgg ctctcggtgg gccatgaggt taagggcaga agtgtttaca agtggtgtct
     5581 tgcgtccgtt ctcttgctta agctgttgaa atgcgctgct gttactcgcc aggaacgcac
     5641 gtcccgcatc tctccaaaaa tgagtgcgaa gctgtcagcg gtcgaacgat ccgcgatcat
     5701 gcaggagcaa ttcaacgaga tttttggcca ctggatgacc attgcggact gatcaacgcc
     5761 atggatcaag gaaattccga cgcgcaagca tttgcgagtg gccgagcatg cgggtacgaa
     5821 acagacttca gacaggcggc gtggtaatcg cttacgaatg caacggcctt agctgagcgc
     5881 ttgccaattt tttgggtttt tcatggttcg tcggtctttt gttacctcca ggcatttcta
     5941 tctgcattcc gcccggacga ggcggcagct cgtctttctt ctcggcggca ttgtcgttgg
     6001 cggagcggcc gtagcgctgg cgctgcttgc cgacgaagct caagcggttt tcaggagcct
     6061 tcttgtccgt tcgcgctatg cgtcgctgat cgtcacacct ttcggctttg cggtggtcgc
     6121 ctatctaacc cgacgggtgt ttcccaactc tcaaggaagc ggcattccgc aagcgattgc
     6181 tgctcggcac ctcacggatc aaaatgctcg tgggactctc gtctcgatcc ggatcgccgt
     6241 cggtaaattg tttctgactt tgttcggact gctttgcggt gcctcaatcg gccgcgaggg
     6301 cccgaccgtc caggtcggcg cttcgatcat gttcgcggtc gggcgtctct cgccgcgccg
     6361 gcagcccggg ctcattctcg ctggtgcgtc ggctggagtg gccgccgcat tcaacacgcc
     6421 acttgccggt atcgtgttcg gcatcgagga aatgagccgc gcattcgagg aacgaacgag
     6481 cgcgcttctg atcgttgcca tcgtcgcggc cgggctgacc tcgctggcgc tgcttggcga
     6541 ctacacctat tttggcacga catcagcaaa gcttggtgcg gttggatggc ttgccgttcc
     6601 ggtttgcgga attgtcggcg gccttcttgg cggcactttt agccgcatct tgatcgagtt
     6661 cggccgcgga cttccaggcg cgacgggcaa agcaatcaag agccacccga tcgtcttcgc
     6721 aacactttgt ggccttggcg ttgcgctgtg cggtctcgca tcgcacgata ccatctatgg
     6781 gactggttac gcccaggtcc gaccccttct taaccgcggc gttgctcttc cacagtcgtt
     6841 tgggctcctg aagctcaccg ctacggcact tgcttcgatc agcggaattc cgggcggaat
     6901 attttcgcct tcgctcgccg tgggcgcggg gatcggcttt aacctttcga cgctctttcc
     6961 ctcaacgccg gtcgccgcgc tggtactcct tggaatggtg tcatacttcg ccggcgtcgt
     7021 tcaagcgccg attacatcct tcgtcattgt caccgaaatg acgaacgacc actcaatggt
     7081 cgttccgctc atggcagcgg cgttcattgg tcgcgcggcg tctcgcctga tttgccgaga
     7141 aggcatttat catgcgctct caaagaattt cattgctgcg gctgaaaaga aatcgacgtg
     7201 agggtgaatc tattctcgag ccagagcttc cttcaccgcg cagtcgcacg gatatcctcg
     7261 gctaagtcgt tgaccaggac taaggaagaa ggatgagcag gggaccagcg gtggaacggg
     7321 cttacgagct agcgaggtcc gaaatgtcgc agtgtcttgg aaattatccg acatctgccc
     7381 ccggccgacc gggaacaggt tgaagcgcac ctcgccaagc cgggcgctcg acgcgatctc
     7441 atcctcgttt gcagtgaagc ctggctcgca actcaatagc aacggggtct tacggacgag
     7501 gcgcaatccg aaggcacggc ggagtgcggc tccacgtcat taaccgcaac gacctattca
     7561 gggtagcact cgggacgctg gtccggatgt tccgcgaaat atcgcttgcg cgcttcctta
     7621 tcgatcttcg catgatttgg accgggtatc accatcaggc gcttgatgag cgctcccggc
     7681 agggcatctt ccgcgcgcgc gggcttccac tgttcagtga tgccacggca aatgaaaaa
//
